@jbrowse/plugin-legacy-jbrowse 2.3.3 → 2.4.0
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
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@@ -1 +1 @@
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1
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-
{"version":3,"file":"JBrowse1TextSearchAdapter.js","sourceRoot":"","sources":["../../src/JBrowse1TextSearchAdapter/JBrowse1TextSearchAdapter.ts"],"names":[],"mappings":";;;;;AAAA,yEAIgD;AAChD,uFAA6D;AAE7D,+DAA4D;AAE5D,wDAA+B;AAgB/B,gCAAgC;AAChC,wCAAwC;AACxC,MAAqB,yBACnB,SAAQ,yBAAW;IAOnB,YACE,MAAuC,EACvC,aAAiC,EACjC,aAA6B;QAE7B,KAAK,CAAC,MAAM,EAAE,aAAa,EAAE,aAAa,CAAC,CAAA;QAC3C,MAAM,kBAAkB,GAAG,IAAA,8BAAc,EAAC,MAAM,EAAE,oBAAoB,CAAC,CAAA;QACvE,IAAI,CAAC,kBAAkB,EAAE;YACvB,MAAM,IAAI,KAAK,CAAC,iCAAiC,CAAC,CAAA;SACnD;QACD,IAAI,CAAC,OAAO,GAAG,IAAI,iBAAO,CAAC;YACzB,GAAG,EAAE,kBAAkB,CAAC,OAAO;gBAC7B,CAAC,CAAC,IAAI,GAAG,CAAC,kBAAkB,CAAC,GAAG,EAAE,kBAAkB,CAAC,OAAO,CAAC,CAAC,IAAI;gBAClE,CAAC,CAAC,kBAAkB,CAAC,GAAG;SAC3B,CAAC,CAAA;IACJ,CAAC;IAED;;;;OAIG;IACH,KAAK,CAAC,aAAa,CAAC,KAAa;QAC/B,OAAO,IAAI,CAAC,OAAO,CAAC,SAAS,CAAC,KAAK,CAAC,CAAA;IACtC,CAAC;IAED,KAAK,CAAC,WAAW,CAAC,IAAc;QAC9B,MAAM,EAAE,UAAU,EAAE,WAAW,EAAE,GAAG,IAAI,CAAA;QACxC,MAAM,MAAM,GAAG,IAAI,CAAC,WAAW,IAAI,CAAC,MAAM,IAAI,CAAC,OAAO,CAAC,aAAa,EAAE,CAAC,CAAA;QACvE,MAAM,OAAO,GAAG,MAAM,IAAI,CAAC,aAAa,CAAC,WAAW,CAAC,WAAW,EAAE,CAAC,CAAA;QACnE,IAAI,OAAO,CAAC,WAAW,CAAC,EAAE;YACxB,OAAO,IAAI,CAAC,aAAa,CAAC,OAAO,CAAC,WAAW,CAAC,EAAE,MAAM,EAAE,UAAU,CAAC,CAAA;SACpE;QACD,OAAO,EAAE,CAAA;IACX,CAAC;IACD,aAAa,CAAC,OAAsB,EAAE,MAAgB,EAAE,UAAmB;QACzE,OAAO;YACL,GAAG,CAAC,UAAU,KAAK,OAAO;gBACxB,CAAC,CAAC,EAAE;gBACJ,CAAC,CAAC,OAAO,CAAC,MAAM,CAAC,GAAG,CAAC,MAAM,CAAC,EAAE;oBAC1B,OAAO,IAAI,qBAAU,CAAC;wBACpB,KAAK,EAAE,OAAO,MAAM,KAAK,QAAQ,CAAC,CAAC,CAAC,MAAM,CAAC,IAAI,CAAC,CAAC,CAAC,MAAM;wBACxD,gBAAgB,EAAE,MAAM;wBACxB,aAAa,EAAE,EAAE,MAAM,EAAE,MAAM,EAAE;qBAClC,CAAC,CAAA;gBACJ,CAAC,CAAC,CAAC;YACP,GAAG,OAAO,CAAC,KAAK,CAAC,GAAG,CAAC,MAAM,CAAC,EAAE;gBAC5B,MAAM,IAAI,GAAG,MAAM,CAAC,CAAC,
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1
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{"version":3,"file":"JBrowse1TextSearchAdapter.js","sourceRoot":"","sources":["../../src/JBrowse1TextSearchAdapter/JBrowse1TextSearchAdapter.ts"],"names":[],"mappings":";;;;;AAAA,yEAIgD;AAChD,uFAA6D;AAE7D,+DAA4D;AAE5D,wDAA+B;AAgB/B,gCAAgC;AAChC,wCAAwC;AACxC,MAAqB,yBACnB,SAAQ,yBAAW;IAOnB,YACE,MAAuC,EACvC,aAAiC,EACjC,aAA6B;QAE7B,KAAK,CAAC,MAAM,EAAE,aAAa,EAAE,aAAa,CAAC,CAAA;QAC3C,MAAM,kBAAkB,GAAG,IAAA,8BAAc,EAAC,MAAM,EAAE,oBAAoB,CAAC,CAAA;QACvE,IAAI,CAAC,kBAAkB,EAAE;YACvB,MAAM,IAAI,KAAK,CAAC,iCAAiC,CAAC,CAAA;SACnD;QACD,IAAI,CAAC,OAAO,GAAG,IAAI,iBAAO,CAAC;YACzB,GAAG,EAAE,kBAAkB,CAAC,OAAO;gBAC7B,CAAC,CAAC,IAAI,GAAG,CAAC,kBAAkB,CAAC,GAAG,EAAE,kBAAkB,CAAC,OAAO,CAAC,CAAC,IAAI;gBAClE,CAAC,CAAC,kBAAkB,CAAC,GAAG;SAC3B,CAAC,CAAA;IACJ,CAAC;IAED;;;;OAIG;IACH,KAAK,CAAC,aAAa,CAAC,KAAa;QAC/B,OAAO,IAAI,CAAC,OAAO,CAAC,SAAS,CAAC,KAAK,CAAC,CAAA;IACtC,CAAC;IAED,KAAK,CAAC,WAAW,CAAC,IAAc;QAC9B,MAAM,EAAE,UAAU,EAAE,WAAW,EAAE,GAAG,IAAI,CAAA;QACxC,MAAM,MAAM,GAAG,IAAI,CAAC,WAAW,IAAI,CAAC,MAAM,IAAI,CAAC,OAAO,CAAC,aAAa,EAAE,CAAC,CAAA;QACvE,MAAM,OAAO,GAAG,MAAM,IAAI,CAAC,aAAa,CAAC,WAAW,CAAC,WAAW,EAAE,CAAC,CAAA;QACnE,IAAI,OAAO,CAAC,WAAW,CAAC,EAAE;YACxB,OAAO,IAAI,CAAC,aAAa,CAAC,OAAO,CAAC,WAAW,CAAC,EAAE,MAAM,EAAE,UAAU,CAAC,CAAA;SACpE;QACD,OAAO,EAAE,CAAA;IACX,CAAC;IACD,aAAa,CAAC,OAAsB,EAAE,MAAgB,EAAE,UAAmB;QACzE,OAAO;YACL,GAAG,CAAC,UAAU,KAAK,OAAO;gBACxB,CAAC,CAAC,EAAE;gBACJ,CAAC,CAAC,OAAO,CAAC,MAAM,CAAC,GAAG,CAAC,MAAM,CAAC,EAAE;oBAC1B,OAAO,IAAI,qBAAU,CAAC;wBACpB,KAAK,EAAE,OAAO,MAAM,KAAK,QAAQ,CAAC,CAAC,CAAC,MAAM,CAAC,IAAI,CAAC,CAAC,CAAC,MAAM;wBACxD,gBAAgB,EAAE,MAAM;wBACxB,aAAa,EAAE,EAAE,MAAM,EAAE,MAAM,EAAE;qBAClC,CAAC,CAAA;gBACJ,CAAC,CAAC,CAAC;YACP,GAAG,OAAO,CAAC,KAAK,CAAC,GAAG,CAAC,MAAM,CAAC,EAAE;gBAC5B,MAAM,IAAI,GAAG,MAAM,CAAC,CAAC,CAAC,CAAA;gBACtB,MAAM,UAAU,GAAG,MAAM,CAAC,CAAC,CAAC,CAAA;gBAC5B,MAAM,OAAO,GAAG,MAAM,CAAC,CAAC,CAAC,CAAA;gBACzB,MAAM,KAAK,GAAG,MAAM,CAAC,CAAC,CAAC,CAAA;gBACvB,MAAM,GAAG,GAAG,MAAM,CAAC,CAAC,CAAC,CAAA;gBACrB,MAAM,SAAS,GAAG,GAAG,OAAO,IAAI,IAAI,IAAI,KAAK,IAAI,GAAG,EAAE,CAAA;gBACtD,OAAO,IAAI,qBAAU,CAAC;oBACpB,SAAS,EAAE,SAAS;oBACpB,KAAK,EAAE,IAAI;oBACX,gBAAgB,EAAE,MAAM;oBACxB,aAAa,EAAE,MAAM;oBACrB,OAAO,EAAE,MAAM,CAAC,UAAU,CAAC;iBAC5B,CAAC,CAAA;YACJ,CAAC,CAAC;SACH,CAAC,MAAM,CAAC,MAAM,CAAC,EAAE,CAAC,MAAM,CAAC,QAAQ,EAAE,KAAK,kBAAkB,CAAC,CAAA;IAC9D,CAAC;IAED,aAAa,KAAI,CAAC;CACnB;AAzED,4CAyEC"}
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1
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{"version":3,"file":"JBrowse1TextSearchAdapter.js","sourceRoot":"","sources":["../../src/JBrowse1TextSearchAdapter/JBrowse1TextSearchAdapter.ts"],"names":[],"mappings":"AAAA,OAAO,EAGL,WAAW,GACZ,MAAM,yCAAyC,CAAA;AAChD,OAAO,UAAU,MAAM,sCAAsC,CAAA;AAE7D,OAAO,EAAE,cAAc,EAAE,MAAM,6BAA6B,CAAA;AAE5D,OAAO,OAAO,MAAM,WAAW,CAAA;AAgB/B,gCAAgC;AAChC,wCAAwC;AACxC,MAAM,CAAC,OAAO,OAAO,yBACnB,SAAQ,WAAW;IAOnB,YACE,MAAuC,EACvC,aAAiC,EACjC,aAA6B;QAE7B,KAAK,CAAC,MAAM,EAAE,aAAa,EAAE,aAAa,CAAC,CAAA;QAC3C,MAAM,kBAAkB,GAAG,cAAc,CAAC,MAAM,EAAE,oBAAoB,CAAC,CAAA;QACvE,IAAI,CAAC,kBAAkB,EAAE;YACvB,MAAM,IAAI,KAAK,CAAC,iCAAiC,CAAC,CAAA;SACnD;QACD,IAAI,CAAC,OAAO,GAAG,IAAI,OAAO,CAAC;YACzB,GAAG,EAAE,kBAAkB,CAAC,OAAO;gBAC7B,CAAC,CAAC,IAAI,GAAG,CAAC,kBAAkB,CAAC,GAAG,EAAE,kBAAkB,CAAC,OAAO,CAAC,CAAC,IAAI;gBAClE,CAAC,CAAC,kBAAkB,CAAC,GAAG;SAC3B,CAAC,CAAA;IACJ,CAAC;IAED;;;;OAIG;IACH,KAAK,CAAC,aAAa,CAAC,KAAa;QAC/B,OAAO,IAAI,CAAC,OAAO,CAAC,SAAS,CAAC,KAAK,CAAC,CAAA;IACtC,CAAC;IAED,KAAK,CAAC,WAAW,CAAC,IAAc;QAC9B,MAAM,EAAE,UAAU,EAAE,WAAW,EAAE,GAAG,IAAI,CAAA;QACxC,MAAM,MAAM,GAAG,IAAI,CAAC,WAAW,IAAI,CAAC,MAAM,IAAI,CAAC,OAAO,CAAC,aAAa,EAAE,CAAC,CAAA;QACvE,MAAM,OAAO,GAAG,MAAM,IAAI,CAAC,aAAa,CAAC,WAAW,CAAC,WAAW,EAAE,CAAC,CAAA;QACnE,IAAI,OAAO,CAAC,WAAW,CAAC,EAAE;YACxB,OAAO,IAAI,CAAC,aAAa,CAAC,OAAO,CAAC,WAAW,CAAC,EAAE,MAAM,EAAE,UAAU,CAAC,CAAA;SACpE;QACD,OAAO,EAAE,CAAA;IACX,CAAC;IACD,aAAa,CAAC,OAAsB,EAAE,MAAgB,EAAE,UAAmB;QACzE,OAAO;YACL,GAAG,CAAC,UAAU,KAAK,OAAO;gBACxB,CAAC,CAAC,EAAE;gBACJ,CAAC,CAAC,OAAO,CAAC,MAAM,CAAC,GAAG,CAAC,MAAM,CAAC,EAAE;oBAC1B,OAAO,IAAI,UAAU,CAAC;wBACpB,KAAK,EAAE,OAAO,MAAM,KAAK,QAAQ,CAAC,CAAC,CAAC,MAAM,CAAC,IAAI,CAAC,CAAC,CAAC,MAAM;wBACxD,gBAAgB,EAAE,MAAM;wBACxB,aAAa,EAAE,EAAE,MAAM,EAAE,MAAM,EAAE;qBAClC,CAAC,CAAA;gBACJ,CAAC,CAAC,CAAC;YACP,GAAG,OAAO,CAAC,KAAK,CAAC,GAAG,CAAC,MAAM,CAAC,EAAE;gBAC5B,MAAM,IAAI,GAAG,MAAM,CAAC,CAAC,
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{"version":3,"file":"JBrowse1TextSearchAdapter.js","sourceRoot":"","sources":["../../src/JBrowse1TextSearchAdapter/JBrowse1TextSearchAdapter.ts"],"names":[],"mappings":"AAAA,OAAO,EAGL,WAAW,GACZ,MAAM,yCAAyC,CAAA;AAChD,OAAO,UAAU,MAAM,sCAAsC,CAAA;AAE7D,OAAO,EAAE,cAAc,EAAE,MAAM,6BAA6B,CAAA;AAE5D,OAAO,OAAO,MAAM,WAAW,CAAA;AAgB/B,gCAAgC;AAChC,wCAAwC;AACxC,MAAM,CAAC,OAAO,OAAO,yBACnB,SAAQ,WAAW;IAOnB,YACE,MAAuC,EACvC,aAAiC,EACjC,aAA6B;QAE7B,KAAK,CAAC,MAAM,EAAE,aAAa,EAAE,aAAa,CAAC,CAAA;QAC3C,MAAM,kBAAkB,GAAG,cAAc,CAAC,MAAM,EAAE,oBAAoB,CAAC,CAAA;QACvE,IAAI,CAAC,kBAAkB,EAAE;YACvB,MAAM,IAAI,KAAK,CAAC,iCAAiC,CAAC,CAAA;SACnD;QACD,IAAI,CAAC,OAAO,GAAG,IAAI,OAAO,CAAC;YACzB,GAAG,EAAE,kBAAkB,CAAC,OAAO;gBAC7B,CAAC,CAAC,IAAI,GAAG,CAAC,kBAAkB,CAAC,GAAG,EAAE,kBAAkB,CAAC,OAAO,CAAC,CAAC,IAAI;gBAClE,CAAC,CAAC,kBAAkB,CAAC,GAAG;SAC3B,CAAC,CAAA;IACJ,CAAC;IAED;;;;OAIG;IACH,KAAK,CAAC,aAAa,CAAC,KAAa;QAC/B,OAAO,IAAI,CAAC,OAAO,CAAC,SAAS,CAAC,KAAK,CAAC,CAAA;IACtC,CAAC;IAED,KAAK,CAAC,WAAW,CAAC,IAAc;QAC9B,MAAM,EAAE,UAAU,EAAE,WAAW,EAAE,GAAG,IAAI,CAAA;QACxC,MAAM,MAAM,GAAG,IAAI,CAAC,WAAW,IAAI,CAAC,MAAM,IAAI,CAAC,OAAO,CAAC,aAAa,EAAE,CAAC,CAAA;QACvE,MAAM,OAAO,GAAG,MAAM,IAAI,CAAC,aAAa,CAAC,WAAW,CAAC,WAAW,EAAE,CAAC,CAAA;QACnE,IAAI,OAAO,CAAC,WAAW,CAAC,EAAE;YACxB,OAAO,IAAI,CAAC,aAAa,CAAC,OAAO,CAAC,WAAW,CAAC,EAAE,MAAM,EAAE,UAAU,CAAC,CAAA;SACpE;QACD,OAAO,EAAE,CAAA;IACX,CAAC;IACD,aAAa,CAAC,OAAsB,EAAE,MAAgB,EAAE,UAAmB;QACzE,OAAO;YACL,GAAG,CAAC,UAAU,KAAK,OAAO;gBACxB,CAAC,CAAC,EAAE;gBACJ,CAAC,CAAC,OAAO,CAAC,MAAM,CAAC,GAAG,CAAC,MAAM,CAAC,EAAE;oBAC1B,OAAO,IAAI,UAAU,CAAC;wBACpB,KAAK,EAAE,OAAO,MAAM,KAAK,QAAQ,CAAC,CAAC,CAAC,MAAM,CAAC,IAAI,CAAC,CAAC,CAAC,MAAM;wBACxD,gBAAgB,EAAE,MAAM;wBACxB,aAAa,EAAE,EAAE,MAAM,EAAE,MAAM,EAAE;qBAClC,CAAC,CAAA;gBACJ,CAAC,CAAC,CAAC;YACP,GAAG,OAAO,CAAC,KAAK,CAAC,GAAG,CAAC,MAAM,CAAC,EAAE;gBAC5B,MAAM,IAAI,GAAG,MAAM,CAAC,CAAC,CAAC,CAAA;gBACtB,MAAM,UAAU,GAAG,MAAM,CAAC,CAAC,CAAC,CAAA;gBAC5B,MAAM,OAAO,GAAG,MAAM,CAAC,CAAC,CAAC,CAAA;gBACzB,MAAM,KAAK,GAAG,MAAM,CAAC,CAAC,CAAC,CAAA;gBACvB,MAAM,GAAG,GAAG,MAAM,CAAC,CAAC,CAAC,CAAA;gBACrB,MAAM,SAAS,GAAG,GAAG,OAAO,IAAI,IAAI,IAAI,KAAK,IAAI,GAAG,EAAE,CAAA;gBACtD,OAAO,IAAI,UAAU,CAAC;oBACpB,SAAS,EAAE,SAAS;oBACpB,KAAK,EAAE,IAAI;oBACX,gBAAgB,EAAE,MAAM;oBACxB,aAAa,EAAE,MAAM;oBACrB,OAAO,EAAE,MAAM,CAAC,UAAU,CAAC;iBAC5B,CAAC,CAAA;YACJ,CAAC,CAAC;SACH,CAAC,MAAM,CAAC,MAAM,CAAC,EAAE,CAAC,MAAM,CAAC,QAAQ,EAAE,KAAK,kBAAkB,CAAC,CAAA;IAC9D,CAAC;IAED,aAAa,KAAI,CAAC;CACnB"}
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package/package.json
CHANGED
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@@ -1,6 +1,6 @@
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{
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"name": "@jbrowse/plugin-legacy-jbrowse",
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"version": "2.
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"version": "2.4.0",
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"description": "JBrowse 2 plugin for connecting to and reading JBrowse 1 data",
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"keywords": [
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"jbrowse",
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"distModule": "esm/index.js",
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"srcModule": "src/index.ts",
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"module": "esm/index.js",
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"gitHead": "
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"gitHead": "78707a2bc3ba8489f26a590ef83f62ede945d048"
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}
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})
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})),
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...results.exact.map(result => {
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const name = result[0]
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const trackIndex = result[1]
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const refName = result[3]
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const start = result[4]
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const end = result[5]
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const name = result[0]
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const trackIndex = result[1]
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const refName = result[3]
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const start = result[4]
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const end = result[5]
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const locstring = `${refName || name}:${start}-${end}`
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return new BaseResult({
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locString: locstring,
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