@jbrowse/plugin-legacy-jbrowse 2.2.1 → 2.2.2
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/dist/JBrowse1Connection/jb1ToJb2.js +1 -1
- package/dist/JBrowse1Connection/jb1ToJb2.js.map +1 -1
- package/dist/{JBrowse1TextSeachAdapter → JBrowse1TextSearchAdapter}/HttpMap.d.ts +0 -0
- package/dist/{JBrowse1TextSeachAdapter → JBrowse1TextSearchAdapter}/HttpMap.js +0 -0
- package/dist/JBrowse1TextSearchAdapter/HttpMap.js.map +1 -0
- package/dist/{JBrowse1TextSeachAdapter → JBrowse1TextSearchAdapter}/JBrowse1TextSearchAdapter.d.ts +0 -0
- package/dist/{JBrowse1TextSeachAdapter → JBrowse1TextSearchAdapter}/JBrowse1TextSearchAdapter.js +0 -0
- package/dist/JBrowse1TextSearchAdapter/JBrowse1TextSearchAdapter.js.map +1 -0
- package/dist/{JBrowse1TextSeachAdapter → JBrowse1TextSearchAdapter}/configSchema.d.ts +0 -0
- package/dist/{JBrowse1TextSeachAdapter → JBrowse1TextSearchAdapter}/configSchema.js +0 -0
- package/dist/JBrowse1TextSearchAdapter/configSchema.js.map +1 -0
- package/dist/{JBrowse1TextSeachAdapter → JBrowse1TextSearchAdapter}/index.d.ts +0 -0
- package/dist/{JBrowse1TextSeachAdapter → JBrowse1TextSearchAdapter}/index.js +0 -0
- package/dist/JBrowse1TextSearchAdapter/index.js.map +1 -0
- package/dist/NCListAdapter/NCListAdapter.d.ts +1 -1
- package/dist/NCListAdapter/NCListAdapter.js +1 -1
- package/dist/index.js +3 -3
- package/dist/index.js.map +1 -1
- package/esm/JBrowse1Connection/jb1ToJb2.js +1 -1
- package/esm/JBrowse1Connection/jb1ToJb2.js.map +1 -1
- package/esm/{JBrowse1TextSeachAdapter → JBrowse1TextSearchAdapter}/HttpMap.d.ts +0 -0
- package/esm/{JBrowse1TextSeachAdapter → JBrowse1TextSearchAdapter}/HttpMap.js +0 -0
- package/esm/JBrowse1TextSearchAdapter/HttpMap.js.map +1 -0
- package/esm/{JBrowse1TextSeachAdapter → JBrowse1TextSearchAdapter}/JBrowse1TextSearchAdapter.d.ts +0 -0
- package/esm/{JBrowse1TextSeachAdapter → JBrowse1TextSearchAdapter}/JBrowse1TextSearchAdapter.js +0 -0
- package/esm/JBrowse1TextSearchAdapter/JBrowse1TextSearchAdapter.js.map +1 -0
- package/esm/{JBrowse1TextSeachAdapter → JBrowse1TextSearchAdapter}/configSchema.d.ts +0 -0
- package/esm/{JBrowse1TextSeachAdapter → JBrowse1TextSearchAdapter}/configSchema.js +0 -0
- package/esm/JBrowse1TextSearchAdapter/configSchema.js.map +1 -0
- package/esm/{JBrowse1TextSeachAdapter → JBrowse1TextSearchAdapter}/index.d.ts +0 -0
- package/esm/{JBrowse1TextSeachAdapter → JBrowse1TextSearchAdapter}/index.js +0 -0
- package/esm/JBrowse1TextSearchAdapter/index.js.map +1 -0
- package/esm/NCListAdapter/NCListAdapter.d.ts +1 -1
- package/esm/NCListAdapter/NCListAdapter.js +1 -1
- package/esm/index.js +1 -1
- package/esm/index.js.map +1 -1
- package/package.json +3 -3
- package/src/JBrowse1Connection/jb1ToJb2.ts +1 -1
- package/src/{JBrowse1TextSeachAdapter → JBrowse1TextSearchAdapter}/HttpMap.test.ts +0 -0
- package/src/{JBrowse1TextSeachAdapter → JBrowse1TextSearchAdapter}/HttpMap.ts +0 -0
- package/src/{JBrowse1TextSeachAdapter → JBrowse1TextSearchAdapter}/JBrowse1TextSearchAdapter.test.ts +0 -0
- package/src/{JBrowse1TextSeachAdapter → JBrowse1TextSearchAdapter}/JBrowse1TextSearchAdapter.ts +0 -0
- package/src/{JBrowse1TextSeachAdapter → JBrowse1TextSearchAdapter}/configSchema.ts +0 -0
- package/src/{JBrowse1TextSeachAdapter → JBrowse1TextSearchAdapter}/index.ts +0 -0
- package/src/NCListAdapter/NCListAdapter.ts +1 -1
- package/src/index.ts +1 -1
- package/dist/JBrowse1TextSeachAdapter/HttpMap.js.map +0 -1
- package/dist/JBrowse1TextSeachAdapter/JBrowse1TextSearchAdapter.js.map +0 -1
- package/dist/JBrowse1TextSeachAdapter/configSchema.js.map +0 -1
- package/dist/JBrowse1TextSeachAdapter/index.js.map +0 -1
- package/esm/JBrowse1TextSeachAdapter/HttpMap.js.map +0 -1
- package/esm/JBrowse1TextSeachAdapter/JBrowse1TextSearchAdapter.js.map +0 -1
- package/esm/JBrowse1TextSeachAdapter/configSchema.js.map +0 -1
- package/esm/JBrowse1TextSeachAdapter/index.js.map +0 -1
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@@ -329,7 +329,7 @@ function convertTrackConfig(jb1TrackConfig, dataRoot, sequenceAdapter) {
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};
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}
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}
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-
// If we don't
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+
// If we don't recognize the store class, make a best effort to guess by file type
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jb2TrackConfig.adapter = (0, tracks_1.guessAdapter)({ uri: urlTemplate, locationType: 'UriLocation' }, undefined, urlTemplate);
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if (!jb2TrackConfig.adapter) {
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throw new Error('Could not determine adapter');
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@@ -1 +1 @@
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1
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-
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1
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+
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+
{"version":3,"file":"configSchema.js","sourceRoot":"","sources":["../../src/JBrowse1TextSearchAdapter/configSchema.ts"],"names":[],"mappings":";;AAAA,+DAAiE;AAEjE;;;GAGG;AACH,SAAS,CAAC,KAAI,CAAC,CAAC,wDAAwD;AAExE,kBAAe,IAAA,mCAAmB,EAChC,2BAA2B,EAC3B;IACE;;OAEG;IACH,kBAAkB,EAAE;QAClB,IAAI,EAAE,cAAc;QACpB,YAAY,EAAE,EAAE,GAAG,EAAE,eAAe,EAAE,YAAY,EAAE,aAAa,EAAE;QACnE,WAAW,EAAE,yDAAyD;KACvE;IACD;;OAEG;IACH,MAAM,EAAE;QACN,IAAI,EAAE,aAAa;QACnB,YAAY,EAAE,EAAE;QAChB,WAAW,EAAE,+CAA+C;KAC7D;IACD;;OAEG;IACH,aAAa,EAAE;QACb,IAAI,EAAE,aAAa;QACnB,YAAY,EAAE,EAAE;QAChB,WAAW,EAAE,mDAAmD;KACjE;CACF,EACD;IACE,eAAe,EAAE,IAAI;IACrB;;OAEG;IACH,kBAAkB,EAAE,qBAAqB;CAC1C,CACF,CAAA"}
|
|
File without changes
|
|
File without changes
|
|
@@ -0,0 +1 @@
|
|
|
1
|
+
{"version":3,"file":"index.js","sourceRoot":"","sources":["../../src/JBrowse1TextSearchAdapter/index.ts"],"names":[],"mappings":";;;;;;AAAA,yEAAqE;AAA5D,0IAAA,OAAO,OAAgB;AAChC,+CAAwD;AAA/C,6HAAA,OAAO,OAAgB"}
|
|
@@ -26,7 +26,7 @@ export default class NCListAdapter extends BaseFeatureDataAdapter {
|
|
|
26
26
|
getRefNames(): Promise<string[]>;
|
|
27
27
|
/**
|
|
28
28
|
* called to provide a hint that data tied to a certain region
|
|
29
|
-
* will not be needed for the
|
|
29
|
+
* will not be needed for the foreseeable future and can be purged
|
|
30
30
|
* from caches, etc
|
|
31
31
|
*/
|
|
32
32
|
freeResources(): void;
|
|
@@ -57,7 +57,7 @@ class NCListAdapter extends BaseAdapter_1.BaseFeatureDataAdapter {
|
|
|
57
57
|
}
|
|
58
58
|
/**
|
|
59
59
|
* called to provide a hint that data tied to a certain region
|
|
60
|
-
* will not be needed for the
|
|
60
|
+
* will not be needed for the foreseeable future and can be purged
|
|
61
61
|
* from caches, etc
|
|
62
62
|
*/
|
|
63
63
|
freeResources() { }
|
package/dist/index.js
CHANGED
|
@@ -31,7 +31,7 @@ const TextSearchAdapterType_1 = __importDefault(require("@jbrowse/core/pluggable
|
|
|
31
31
|
const ConnectionType_1 = __importDefault(require("@jbrowse/core/pluggableElementTypes/ConnectionType"));
|
|
32
32
|
const Plugin_1 = __importDefault(require("@jbrowse/core/Plugin"));
|
|
33
33
|
const NCListAdapter_1 = require("./NCListAdapter");
|
|
34
|
-
const
|
|
34
|
+
const JBrowse1TextSearchAdapter_1 = require("./JBrowse1TextSearchAdapter");
|
|
35
35
|
const tracks_1 = require("@jbrowse/core/util/tracks");
|
|
36
36
|
const JBrowse1Connection_1 = require("./JBrowse1Connection");
|
|
37
37
|
class LegacyJBrowsePlugin extends Plugin_1.default {
|
|
@@ -61,8 +61,8 @@ class LegacyJBrowsePlugin extends Plugin_1.default {
|
|
|
61
61
|
});
|
|
62
62
|
pluginManager.addTextSearchAdapterType(() => new TextSearchAdapterType_1.default({
|
|
63
63
|
name: 'JBrowse1TextSearchAdapter',
|
|
64
|
-
configSchema:
|
|
65
|
-
AdapterClass:
|
|
64
|
+
configSchema: JBrowse1TextSearchAdapter_1.configSchema,
|
|
65
|
+
AdapterClass: JBrowse1TextSearchAdapter_1.AdapterClass,
|
|
66
66
|
description: 'A JBrowse 1 text search adapter',
|
|
67
67
|
}));
|
|
68
68
|
pluginManager.addConnectionType(() => new ConnectionType_1.default({
|
package/dist/index.js.map
CHANGED
|
@@ -1 +1 @@
|
|
|
1
|
-
{"version":3,"file":"index.js","sourceRoot":"","sources":["../src/index.ts"],"names":[],"mappings":";;;;;;;;;;;;;;;;;;;;;;;;;;;;AAAA,kGAAyE;AACzE,sHAA6F;AAC7F,wGAA+E;AAC/E,kEAAyC;AAGzC,mDAA2E;AAC3E,
|
|
1
|
+
{"version":3,"file":"index.js","sourceRoot":"","sources":["../src/index.ts"],"names":[],"mappings":";;;;;;;;;;;;;;;;;;;;;;;;;;;;AAAA,kGAAyE;AACzE,sHAA6F;AAC7F,wGAA+E;AAC/E,kEAAyC;AAGzC,mDAA2E;AAC3E,2EAGoC;AACpC,sDAAuE;AAEvE,6DAG6B;AAE7B,MAAqB,mBAAoB,SAAQ,gBAAM;IAAvD;;QACE,SAAI,GAAG,qBAAqB,CAAA;IAwD9B,CAAC;IAtDC,OAAO,CAAC,aAA4B;QAClC,aAAa,CAAC,cAAc,CAC1B,GAAG,EAAE,CACH,IAAI,qBAAW,CAAC;YACd,IAAI,EAAE,eAAe;YACrB,YAAY,EAAE,4BAAyB;YACvC,eAAe,EAAE,GAAG,EAAE,CACpB,kDAAO,+BAA+B,IAAE,IAAI,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,OAAO,CAAC;SAC/D,CAAC,CACL,CAAA;QACD,aAAa,CAAC,mBAAmB,CAC/B,8BAA8B,EAC9B,CAAC,cAA8B,EAAE,EAAE;YACjC,OAAO,CACL,IAAkB,EAClB,KAAoB,EACpB,WAAoB,EACpB,EAAE;gBACF,MAAM,UAAU,GAAG,oBAAoB,CAAA;gBACvC,MAAM,WAAW,GAAG,eAAe,CAAA;gBACnC,MAAM,QAAQ,GAAG,IAAA,oBAAW,EAAC,IAAI,CAAC,CAAA;gBAClC,IAAI,UAAU,CAAC,IAAI,CAAC,QAAQ,CAAC,IAAI,WAAW,KAAK,WAAW,EAAE;oBAC5D,OAAO;wBACL,IAAI,EAAE,WAAW;wBACjB,eAAe,EAAE,IAAI;qBACtB,CAAA;iBACF;gBACD,OAAO,cAAc,CAAC,IAAI,EAAE,KAAK,EAAE,WAAW,CAAC,CAAA;YACjD,CAAC,CAAA;QACH,CAAC,CACF,CAAA;QAED,aAAa,CAAC,wBAAwB,CACpC,GAAG,EAAE,CACH,IAAI,+BAAqB,CAAC;YACxB,IAAI,EAAE,2BAA2B;YACjC,YAAY,EAAE,wCAA2B;YACzC,YAAY,EAAE,wCAA8B;YAC5C,WAAW,EAAE,iCAAiC;SAC/C,CAAC,CACL,CAAA;QAED,aAAa,CAAC,iBAAiB,CAC7B,GAAG,EAAE,CACH,IAAI,wBAAc,CAAC;YACjB,IAAI,EAAE,oBAAoB;YAC1B,YAAY,EAAE,iCAAoB;YAClC,UAAU,EAAE,IAAA,iCAAoB,EAAC,aAAa,CAAC;YAC/C,WAAW,EAAE,gBAAgB;YAC7B,WAAW,EAAE,4BAA4B;YACzC,GAAG,EAAE,gBAAgB;SACtB,CAAC,CACL,CAAA;IACH,CAAC;CACF;AAzDD,sCAyDC"}
|
|
@@ -326,7 +326,7 @@ export function convertTrackConfig(jb1TrackConfig, dataRoot, sequenceAdapter) {
|
|
|
326
326
|
};
|
|
327
327
|
}
|
|
328
328
|
}
|
|
329
|
-
// If we don't
|
|
329
|
+
// If we don't recognize the store class, make a best effort to guess by file type
|
|
330
330
|
jb2TrackConfig.adapter = guessAdapter({ uri: urlTemplate, locationType: 'UriLocation' }, undefined, urlTemplate);
|
|
331
331
|
if (!jb2TrackConfig.adapter) {
|
|
332
332
|
throw new Error('Could not determine adapter');
|
|
@@ -1 +1 @@
|
|
|
1
|
-
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1
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+
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+
{"version":3,"file":"configSchema.js","sourceRoot":"","sources":["../../src/JBrowse1TextSearchAdapter/configSchema.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,mBAAmB,EAAE,MAAM,6BAA6B,CAAA;AAEjE;;;GAGG;AACH,SAAS,CAAC,KAAI,CAAC,CAAC,wDAAwD;AAExE,eAAe,mBAAmB,CAChC,2BAA2B,EAC3B;IACE;;OAEG;IACH,kBAAkB,EAAE;QAClB,IAAI,EAAE,cAAc;QACpB,YAAY,EAAE,EAAE,GAAG,EAAE,eAAe,EAAE,YAAY,EAAE,aAAa,EAAE;QACnE,WAAW,EAAE,yDAAyD;KACvE;IACD;;OAEG;IACH,MAAM,EAAE;QACN,IAAI,EAAE,aAAa;QACnB,YAAY,EAAE,EAAE;QAChB,WAAW,EAAE,+CAA+C;KAC7D;IACD;;OAEG;IACH,aAAa,EAAE;QACb,IAAI,EAAE,aAAa;QACnB,YAAY,EAAE,EAAE;QAChB,WAAW,EAAE,mDAAmD;KACjE;CACF,EACD;IACE,eAAe,EAAE,IAAI;IACrB;;OAEG;IACH,kBAAkB,EAAE,qBAAqB;CAC1C,CACF,CAAA"}
|
|
File without changes
|
|
File without changes
|
|
@@ -0,0 +1 @@
|
|
|
1
|
+
{"version":3,"file":"index.js","sourceRoot":"","sources":["../../src/JBrowse1TextSearchAdapter/index.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,OAAO,IAAI,YAAY,EAAE,MAAM,6BAA6B,CAAA;AACrE,OAAO,EAAE,OAAO,IAAI,YAAY,EAAE,MAAM,gBAAgB,CAAA"}
|
|
@@ -26,7 +26,7 @@ export default class NCListAdapter extends BaseFeatureDataAdapter {
|
|
|
26
26
|
getRefNames(): Promise<string[]>;
|
|
27
27
|
/**
|
|
28
28
|
* called to provide a hint that data tied to a certain region
|
|
29
|
-
* will not be needed for the
|
|
29
|
+
* will not be needed for the foreseeable future and can be purged
|
|
30
30
|
* from caches, etc
|
|
31
31
|
*/
|
|
32
32
|
freeResources(): void;
|
|
@@ -52,7 +52,7 @@ export default class NCListAdapter extends BaseFeatureDataAdapter {
|
|
|
52
52
|
}
|
|
53
53
|
/**
|
|
54
54
|
* called to provide a hint that data tied to a certain region
|
|
55
|
-
* will not be needed for the
|
|
55
|
+
* will not be needed for the foreseeable future and can be purged
|
|
56
56
|
* from caches, etc
|
|
57
57
|
*/
|
|
58
58
|
freeResources() { }
|
package/esm/index.js
CHANGED
|
@@ -3,7 +3,7 @@ import TextSearchAdapterType from '@jbrowse/core/pluggableElementTypes/TextSearc
|
|
|
3
3
|
import ConnectionType from '@jbrowse/core/pluggableElementTypes/ConnectionType';
|
|
4
4
|
import Plugin from '@jbrowse/core/Plugin';
|
|
5
5
|
import { configSchema as ncListAdapterConfigSchema } from './NCListAdapter';
|
|
6
|
-
import { AdapterClass as JBrowse1TextSearchAdapterClass, configSchema as jbrowse1AdapterConfigSchema, } from './
|
|
6
|
+
import { AdapterClass as JBrowse1TextSearchAdapterClass, configSchema as jbrowse1AdapterConfigSchema, } from './JBrowse1TextSearchAdapter';
|
|
7
7
|
import { getFileName } from '@jbrowse/core/util/tracks';
|
|
8
8
|
import { configSchema as jbrowse1ConfigSchema, modelFactory as jbrowse1ModelFactory, } from './JBrowse1Connection';
|
|
9
9
|
export default class LegacyJBrowsePlugin extends Plugin {
|
package/esm/index.js.map
CHANGED
|
@@ -1 +1 @@
|
|
|
1
|
-
{"version":3,"file":"index.js","sourceRoot":"","sources":["../src/index.ts"],"names":[],"mappings":"AAAA,OAAO,WAAW,MAAM,iDAAiD,CAAA;AACzE,OAAO,qBAAqB,MAAM,2DAA2D,CAAA;AAC7F,OAAO,cAAc,MAAM,oDAAoD,CAAA;AAC/E,OAAO,MAAM,MAAM,sBAAsB,CAAA;AAGzC,OAAO,EAAE,YAAY,IAAI,yBAAyB,EAAE,MAAM,iBAAiB,CAAA;AAC3E,OAAO,EACL,YAAY,IAAI,8BAA8B,EAC9C,YAAY,IAAI,2BAA2B,GAC5C,MAAM,
|
|
1
|
+
{"version":3,"file":"index.js","sourceRoot":"","sources":["../src/index.ts"],"names":[],"mappings":"AAAA,OAAO,WAAW,MAAM,iDAAiD,CAAA;AACzE,OAAO,qBAAqB,MAAM,2DAA2D,CAAA;AAC7F,OAAO,cAAc,MAAM,oDAAoD,CAAA;AAC/E,OAAO,MAAM,MAAM,sBAAsB,CAAA;AAGzC,OAAO,EAAE,YAAY,IAAI,yBAAyB,EAAE,MAAM,iBAAiB,CAAA;AAC3E,OAAO,EACL,YAAY,IAAI,8BAA8B,EAC9C,YAAY,IAAI,2BAA2B,GAC5C,MAAM,6BAA6B,CAAA;AACpC,OAAO,EAAkB,WAAW,EAAE,MAAM,2BAA2B,CAAA;AAEvE,OAAO,EACL,YAAY,IAAI,oBAAoB,EACpC,YAAY,IAAI,oBAAoB,GACrC,MAAM,sBAAsB,CAAA;AAE7B,MAAM,CAAC,OAAO,OAAO,mBAAoB,SAAQ,MAAM;IAAvD;;QACE,SAAI,GAAG,qBAAqB,CAAA;IAwD9B,CAAC;IAtDC,OAAO,CAAC,aAA4B;QAClC,aAAa,CAAC,cAAc,CAC1B,GAAG,EAAE,CACH,IAAI,WAAW,CAAC;YACd,IAAI,EAAE,eAAe;YACrB,YAAY,EAAE,yBAAyB;YACvC,eAAe,EAAE,GAAG,EAAE,CACpB,MAAM,CAAC,+BAA+B,CAAC,CAAC,IAAI,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,OAAO,CAAC;SAC/D,CAAC,CACL,CAAA;QACD,aAAa,CAAC,mBAAmB,CAC/B,8BAA8B,EAC9B,CAAC,cAA8B,EAAE,EAAE;YACjC,OAAO,CACL,IAAkB,EAClB,KAAoB,EACpB,WAAoB,EACpB,EAAE;gBACF,MAAM,UAAU,GAAG,oBAAoB,CAAA;gBACvC,MAAM,WAAW,GAAG,eAAe,CAAA;gBACnC,MAAM,QAAQ,GAAG,WAAW,CAAC,IAAI,CAAC,CAAA;gBAClC,IAAI,UAAU,CAAC,IAAI,CAAC,QAAQ,CAAC,IAAI,WAAW,KAAK,WAAW,EAAE;oBAC5D,OAAO;wBACL,IAAI,EAAE,WAAW;wBACjB,eAAe,EAAE,IAAI;qBACtB,CAAA;iBACF;gBACD,OAAO,cAAc,CAAC,IAAI,EAAE,KAAK,EAAE,WAAW,CAAC,CAAA;YACjD,CAAC,CAAA;QACH,CAAC,CACF,CAAA;QAED,aAAa,CAAC,wBAAwB,CACpC,GAAG,EAAE,CACH,IAAI,qBAAqB,CAAC;YACxB,IAAI,EAAE,2BAA2B;YACjC,YAAY,EAAE,2BAA2B;YACzC,YAAY,EAAE,8BAA8B;YAC5C,WAAW,EAAE,iCAAiC;SAC/C,CAAC,CACL,CAAA;QAED,aAAa,CAAC,iBAAiB,CAC7B,GAAG,EAAE,CACH,IAAI,cAAc,CAAC;YACjB,IAAI,EAAE,oBAAoB;YAC1B,YAAY,EAAE,oBAAoB;YAClC,UAAU,EAAE,oBAAoB,CAAC,aAAa,CAAC;YAC/C,WAAW,EAAE,gBAAgB;YAC7B,WAAW,EAAE,4BAA4B;YACzC,GAAG,EAAE,gBAAgB;SACtB,CAAC,CACL,CAAA;IACH,CAAC;CACF"}
|
package/package.json
CHANGED
|
@@ -1,6 +1,6 @@
|
|
|
1
1
|
{
|
|
2
2
|
"name": "@jbrowse/plugin-legacy-jbrowse",
|
|
3
|
-
"version": "2.2.
|
|
3
|
+
"version": "2.2.2",
|
|
4
4
|
"description": "JBrowse 2 plugin for connecting to and reading JBrowse 1 data",
|
|
5
5
|
"keywords": [
|
|
6
6
|
"jbrowse",
|
|
@@ -27,7 +27,7 @@
|
|
|
27
27
|
"build": "npm-run-all build:*",
|
|
28
28
|
"test": "cd ../..; jest plugins/legacy-jbrowse",
|
|
29
29
|
"prepublishOnly": "yarn test",
|
|
30
|
-
"prepack": "yarn build
|
|
30
|
+
"prepack": "yarn build && yarn useDist",
|
|
31
31
|
"postpack": "yarn useSrc",
|
|
32
32
|
"useDist": "node ../../scripts/useDist.js",
|
|
33
33
|
"useSrc": "node ../../scripts/useSrc.js",
|
|
@@ -56,5 +56,5 @@
|
|
|
56
56
|
"distModule": "esm/index.js",
|
|
57
57
|
"srcModule": "src/index.ts",
|
|
58
58
|
"module": "esm/index.js",
|
|
59
|
-
"gitHead": "
|
|
59
|
+
"gitHead": "abbc00e8feedbc58de84a7a3e735ec0224909b29"
|
|
60
60
|
}
|
|
@@ -408,7 +408,7 @@ export function convertTrackConfig(
|
|
|
408
408
|
}
|
|
409
409
|
}
|
|
410
410
|
|
|
411
|
-
// If we don't
|
|
411
|
+
// If we don't recognize the store class, make a best effort to guess by file type
|
|
412
412
|
jb2TrackConfig.adapter = guessAdapter(
|
|
413
413
|
{ uri: urlTemplate, locationType: 'UriLocation' },
|
|
414
414
|
undefined,
|
|
File without changes
|
|
File without changes
|
package/src/{JBrowse1TextSeachAdapter → JBrowse1TextSearchAdapter}/JBrowse1TextSearchAdapter.test.ts
RENAMED
|
File without changes
|
package/src/{JBrowse1TextSeachAdapter → JBrowse1TextSearchAdapter}/JBrowse1TextSearchAdapter.ts
RENAMED
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
@@ -85,7 +85,7 @@ export default class NCListAdapter extends BaseFeatureDataAdapter {
|
|
|
85
85
|
|
|
86
86
|
/**
|
|
87
87
|
* called to provide a hint that data tied to a certain region
|
|
88
|
-
* will not be needed for the
|
|
88
|
+
* will not be needed for the foreseeable future and can be purged
|
|
89
89
|
* from caches, etc
|
|
90
90
|
*/
|
|
91
91
|
freeResources() {}
|
package/src/index.ts
CHANGED
|
@@ -8,7 +8,7 @@ import { configSchema as ncListAdapterConfigSchema } from './NCListAdapter'
|
|
|
8
8
|
import {
|
|
9
9
|
AdapterClass as JBrowse1TextSearchAdapterClass,
|
|
10
10
|
configSchema as jbrowse1AdapterConfigSchema,
|
|
11
|
-
} from './
|
|
11
|
+
} from './JBrowse1TextSearchAdapter'
|
|
12
12
|
import { AdapterGuesser, getFileName } from '@jbrowse/core/util/tracks'
|
|
13
13
|
|
|
14
14
|
import {
|
|
@@ -1 +0,0 @@
|
|
|
1
|
-
{"version":3,"file":"HttpMap.js","sourceRoot":"","sources":["../../src/JBrowse1TextSeachAdapter/HttpMap.ts"],"names":[],"mappings":";;;;;AAAA;;;GAGG;AACH,gEAAgC;AAEhC,MAAqB,OAAO;IAG1B,YAAY,IAAqB;QAC/B,qCAAqC;QACrC,IAAI,CAAC,GAAG,GAAG,KAAK,CAAC,IAAI,CAAC,IAAI,CAAC,GAAG,CAAC,CAAC,CAAC,CAAC,IAAI,CAAC,GAAG,CAAC,CAAC,CAAC,GAAG,IAAI,CAAC,GAAG,GAAG,CAAA;IAC7D,CAAC;IAED;;OAEG;IACH,KAAK,CAAC,QAAQ;QACZ,MAAM,IAAI,GAAG,MAAM,IAAI,CAAC,QAAQ,CAAC,WAAW,CAAC,CAAA;QAC7C,MAAM,EAAE,QAAQ,EAAE,WAAW,EAAE,MAAM,EAAE,GAAG,IAAI,CAAA;QAC9C,MAAM,iBAAiB,GAAG,IAAI,CAAC,IAAI,CAAC,IAAI,CAAC,SAAS,GAAG,CAAC,CAAC,CAAA;QACvD,OAAO,EAAE,iBAAiB,EAAE,QAAQ,EAAE,MAAM,EAAE,CAAA;IAChD,CAAC;IAED,KAAK,CAAC,oBAAoB;QACxB,MAAM,IAAI,GAAG,MAAM,IAAI,CAAC,QAAQ,EAAE,CAAA;QAClC,OAAO,IAAI,CAAC,iBAAiB,CAAA;IAC/B,CAAC;IAED,KAAK,CAAC,WAAW;QACf,MAAM,IAAI,GAAG,MAAM,IAAI,CAAC,QAAQ,EAAE,CAAA;QAClC,OAAO,IAAI,CAAC,QAAQ,CAAA;IACtB,CAAC;IAED,KAAK,CAAC,aAAa;QACjB,MAAM,IAAI,GAAG,MAAM,IAAI,CAAC,QAAQ,EAAE,CAAA;QAClC,OAAO,IAAI,CAAC,MAAM,CAAA;IACpB,CAAC;IAED;;;OAGG;IACH,KAAK,CAAC,GAAG,CAAC,GAAW;QACnB,MAAM,MAAM,GAAG,MAAM,IAAI,CAAC,SAAS,CAAC,GAAG,CAAC,CAAA;QACxC,OAAO,MAAM,CAAC,GAAG,CAAC,CAAA;IACpB,CAAC;IAED;;;OAGG;IACH,KAAK,CAAC,SAAS,CAAC,GAAW;QACzB,MAAM,WAAW,GAAG,IAAI,CAAC,IAAI,CAAC,GAAG,CAAC,CAAA;QAClC,MAAM,YAAY,GAAG,MAAM,IAAI,CAAC,YAAY,CAAC,WAAW,CAAC,CAAA;QACzD,OAAO,IAAI,CAAC,QAAQ,CAAC,YAAY,CAAC,CAAA;IACpC,CAAC;IAED;;;;OAIG;IACH,KAAK,CAAC,QAAQ,CAAC,EAAU;QACvB,MAAM,QAAQ,GAAG,MAAM,KAAK,CAAC,GAAG,IAAI,CAAC,GAAG,GAAG,EAAE,EAAE,CAAC,CAAA;QAChD,IAAI,CAAC,QAAQ,CAAC,EAAE,EAAE;YAChB,MAAM,IAAI,KAAK,CAAC,QAAQ,QAAQ,CAAC,MAAM,IAAI,QAAQ,CAAC,UAAU,EAAE,CAAC,CAAA;SAClE;QACD,OAAO,QAAQ,CAAC,IAAI,EAAE,CAAA;IACxB,CAAC;IAED;;;OAGG;IACH,KAAK,CAAC,YAAY,CAAC,GAAW;QAC5B,qDAAqD;QACrD,MAAM,iBAAiB,GAAG,MAAM,IAAI,CAAC,oBAAoB,EAAE,CAAA;QAC3D,IAAI,iBAAiB,EAAE;YACrB,MAAM,QAAQ,GAAG,MAAM,IAAI,CAAC,WAAW,EAAE,CAAA;YACzC,OAAO,GAAG,CAAC,MAAM,GAAG,CAAC,EAAE;gBACrB,GAAG,GAAG,IAAI,GAAG,EAAE,CAAA;aAChB;YACD,GAAG,GAAG,GAAG,CAAC,MAAM,CAAC,CAAC,GAAG,iBAAiB,CAAC,CAAA;YACvC,MAAM,OAAO,GAAG,EAAE,CAAA;YAClB,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,GAAG,CAAC,MAAM,EAAE,CAAC,IAAI,CAAC,EAAE;gBACtC,OAAO,CAAC,IAAI,CAAC,GAAG,CAAC,SAAS,CAAC,CAAC,EAAE,CAAC,GAAG,CAAC,CAAC,CAAC,CAAA;aACtC;YACD,OAAO,GAAG,OAAO,CAAC,IAAI,CAAC,GAAG,CAAC,QAAQ,QAAQ,CAAC,CAAC,CAAC,GAAG,CAAC,CAAC,CAAC,EAAE,EAAE,CAAA;SACzD;QACD,OAAO,EAAE,CAAA;IACX,CAAC;IAED,IAAI,CAAC,IAAY;QACf,OAAO,IAAA,sBAAK,EAAC,MAAM,CAAC,IAAI,CAAC,IAAI,CAAC,CAAC;aAC5B,QAAQ,CAAC,KAAK,CAAC;aACf,WAAW,EAAE;aACb,OAAO,CAAC,GAAG,EAAE,GAAG,CAAC,CAAA;IACtB,CAAC;CACF;AA7FD,0BA6FC"}
|
|
@@ -1 +0,0 @@
|
|
|
1
|
-
{"version":3,"file":"JBrowse1TextSearchAdapter.js","sourceRoot":"","sources":["../../src/JBrowse1TextSeachAdapter/JBrowse1TextSearchAdapter.ts"],"names":[],"mappings":";;;;;AAAA,yEAIgD;AAChD,uFAA6D;AAE7D,+DAA4D;AAE5D,wDAA+B;AAgB/B,gCAAgC;AAChC,wCAAwC;AACxC,MAAqB,yBACnB,SAAQ,yBAAW;IAOnB,YACE,MAAuC,EACvC,aAAiC,EACjC,aAA6B;QAE7B,KAAK,CAAC,MAAM,EAAE,aAAa,EAAE,aAAa,CAAC,CAAA;QAC3C,MAAM,kBAAkB,GAAG,IAAA,8BAAc,EAAC,MAAM,EAAE,oBAAoB,CAAC,CAAA;QACvE,IAAI,CAAC,kBAAkB,EAAE;YACvB,MAAM,IAAI,KAAK,CAAC,iCAAiC,CAAC,CAAA;SACnD;QACD,IAAI,CAAC,OAAO,GAAG,IAAI,iBAAO,CAAC;YACzB,GAAG,EAAE,kBAAkB,CAAC,OAAO;gBAC7B,CAAC,CAAC,IAAI,GAAG,CAAC,kBAAkB,CAAC,GAAG,EAAE,kBAAkB,CAAC,OAAO,CAAC,CAAC,IAAI;gBAClE,CAAC,CAAC,kBAAkB,CAAC,GAAG;SAC3B,CAAC,CAAA;IACJ,CAAC;IAED;;;;OAIG;IACH,KAAK,CAAC,aAAa,CAAC,KAAa;QAC/B,OAAO,IAAI,CAAC,OAAO,CAAC,SAAS,CAAC,KAAK,CAAC,CAAA;IACtC,CAAC;IAED,KAAK,CAAC,WAAW,CAAC,IAAc;QAC9B,MAAM,EAAE,UAAU,EAAE,WAAW,EAAE,GAAG,IAAI,CAAA;QACxC,MAAM,MAAM,GAAG,IAAI,CAAC,WAAW,IAAI,CAAC,MAAM,IAAI,CAAC,OAAO,CAAC,aAAa,EAAE,CAAC,CAAA;QACvE,MAAM,OAAO,GAAG,MAAM,IAAI,CAAC,aAAa,CAAC,WAAW,CAAC,WAAW,EAAE,CAAC,CAAA;QACnE,IAAI,OAAO,CAAC,WAAW,CAAC,EAAE;YACxB,OAAO,IAAI,CAAC,aAAa,CAAC,OAAO,CAAC,WAAW,CAAC,EAAE,MAAM,EAAE,UAAU,CAAC,CAAA;SACpE;QACD,OAAO,EAAE,CAAA;IACX,CAAC;IACD,aAAa,CAAC,OAAsB,EAAE,MAAgB,EAAE,UAAmB;QACzE,OAAO;YACL,GAAG,CAAC,UAAU,KAAK,OAAO;gBACxB,CAAC,CAAC,EAAE;gBACJ,CAAC,CAAC,OAAO,CAAC,MAAM,CAAC,GAAG,CAAC,MAAM,CAAC,EAAE;oBAC1B,OAAO,IAAI,qBAAU,CAAC;wBACpB,KAAK,EAAE,OAAO,MAAM,KAAK,QAAQ,CAAC,CAAC,CAAC,MAAM,CAAC,IAAI,CAAC,CAAC,CAAC,MAAM;wBACxD,gBAAgB,EAAE,MAAM;wBACxB,aAAa,EAAE,EAAE,MAAM,EAAE,MAAM,EAAE;qBAClC,CAAC,CAAA;gBACJ,CAAC,CAAC,CAAC;YACP,GAAG,OAAO,CAAC,KAAK,CAAC,GAAG,CAAC,MAAM,CAAC,EAAE;gBAC5B,MAAM,IAAI,GAAG,MAAM,CAAC,CAAC,CAAW,CAAA;gBAChC,MAAM,UAAU,GAAG,MAAM,CAAC,CAAC,CAAW,CAAA;gBACtC,MAAM,OAAO,GAAG,MAAM,CAAC,CAAC,CAAW,CAAA;gBACnC,MAAM,KAAK,GAAG,MAAM,CAAC,CAAC,CAAW,CAAA;gBACjC,MAAM,GAAG,GAAG,MAAM,CAAC,CAAC,CAAW,CAAA;gBAC/B,MAAM,SAAS,GAAG,GAAG,OAAO,IAAI,IAAI,IAAI,KAAK,IAAI,GAAG,EAAE,CAAA;gBACtD,OAAO,IAAI,qBAAU,CAAC;oBACpB,SAAS,EAAE,SAAS;oBACpB,KAAK,EAAE,IAAI;oBACX,gBAAgB,EAAE,MAAM;oBACxB,aAAa,EAAE,MAAM;oBACrB,OAAO,EAAE,MAAM,CAAC,UAAU,CAAC;iBAC5B,CAAC,CAAA;YACJ,CAAC,CAAC;SACH,CAAC,MAAM,CAAC,MAAM,CAAC,EAAE,CAAC,MAAM,CAAC,QAAQ,EAAE,KAAK,kBAAkB,CAAC,CAAA;IAC9D,CAAC;IAED,aAAa,KAAI,CAAC;CACnB;AAzED,4CAyEC"}
|
|
@@ -1 +0,0 @@
|
|
|
1
|
-
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