@jbrowse/plugin-legacy-jbrowse 1.7.10 → 2.0.1

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (91) hide show
  1. package/dist/JBrowse1Connection/configSchema.js +18 -28
  2. package/dist/JBrowse1Connection/configSchema.js.map +1 -0
  3. package/dist/JBrowse1Connection/index.js +10 -22
  4. package/dist/JBrowse1Connection/index.js.map +1 -0
  5. package/dist/JBrowse1Connection/jb1ConfigLoad.js +387 -501
  6. package/dist/JBrowse1Connection/jb1ConfigLoad.js.map +1 -0
  7. package/dist/JBrowse1Connection/jb1ConfigParse.js +414 -435
  8. package/dist/JBrowse1Connection/jb1ConfigParse.js.map +1 -0
  9. package/dist/JBrowse1Connection/jb1ToJb2.js +405 -546
  10. package/dist/JBrowse1Connection/jb1ToJb2.js.map +1 -0
  11. package/dist/JBrowse1Connection/model.js +49 -57
  12. package/dist/JBrowse1Connection/model.js.map +1 -0
  13. package/dist/JBrowse1Connection/types.js +2 -4
  14. package/dist/JBrowse1Connection/types.js.map +1 -0
  15. package/dist/JBrowse1Connection/util.js +123 -130
  16. package/dist/JBrowse1Connection/util.js.map +1 -0
  17. package/dist/JBrowse1TextSeachAdapter/HttpMap.js +181 -326
  18. package/dist/JBrowse1TextSeachAdapter/HttpMap.js.map +1 -0
  19. package/dist/JBrowse1TextSeachAdapter/JBrowse1TextSearchAdapter.js +164 -185
  20. package/dist/JBrowse1TextSeachAdapter/JBrowse1TextSearchAdapter.js.map +1 -0
  21. package/dist/JBrowse1TextSeachAdapter/configSchema.js +20 -33
  22. package/dist/JBrowse1TextSeachAdapter/configSchema.js.map +1 -0
  23. package/dist/JBrowse1TextSeachAdapter/index.js +10 -22
  24. package/dist/JBrowse1TextSeachAdapter/index.js.map +1 -0
  25. package/dist/NCListAdapter/NCListAdapter.js +164 -224
  26. package/dist/NCListAdapter/NCListAdapter.js.map +1 -0
  27. package/dist/NCListAdapter/NCListFeature.js +68 -125
  28. package/dist/NCListAdapter/NCListFeature.js.map +1 -0
  29. package/dist/NCListAdapter/configSchema.js +17 -26
  30. package/dist/NCListAdapter/configSchema.js.map +1 -0
  31. package/dist/NCListAdapter/index.js +8 -14
  32. package/dist/NCListAdapter/index.js.map +1 -0
  33. package/dist/index.js +97 -116
  34. package/dist/index.js.map +1 -0
  35. package/esm/JBrowse1Connection/configSchema.d.ts +2 -0
  36. package/esm/JBrowse1Connection/configSchema.js +18 -0
  37. package/esm/JBrowse1Connection/configSchema.js.map +1 -0
  38. package/esm/JBrowse1Connection/index.d.ts +2 -0
  39. package/esm/JBrowse1Connection/index.js +3 -0
  40. package/esm/JBrowse1Connection/index.js.map +1 -0
  41. package/esm/JBrowse1Connection/jb1ConfigLoad.d.ts +36 -0
  42. package/esm/JBrowse1Connection/jb1ConfigLoad.js +281 -0
  43. package/esm/JBrowse1Connection/jb1ConfigLoad.js.map +1 -0
  44. package/esm/JBrowse1Connection/jb1ConfigParse.d.ts +11 -0
  45. package/esm/JBrowse1Connection/jb1ConfigParse.js +377 -0
  46. package/esm/JBrowse1Connection/jb1ConfigParse.js.map +1 -0
  47. package/esm/JBrowse1Connection/jb1ToJb2.d.ts +49 -0
  48. package/esm/JBrowse1Connection/jb1ToJb2.js +424 -0
  49. package/esm/JBrowse1Connection/jb1ToJb2.js.map +1 -0
  50. package/esm/JBrowse1Connection/model.d.ts +15 -0
  51. package/esm/JBrowse1Connection/model.js +44 -0
  52. package/esm/JBrowse1Connection/model.js.map +1 -0
  53. package/esm/JBrowse1Connection/types.d.ts +91 -0
  54. package/esm/JBrowse1Connection/types.js +2 -0
  55. package/esm/JBrowse1Connection/types.js.map +1 -0
  56. package/esm/JBrowse1Connection/util.d.ts +26 -0
  57. package/esm/JBrowse1Connection/util.js +136 -0
  58. package/esm/JBrowse1Connection/util.js.map +1 -0
  59. package/esm/JBrowse1TextSeachAdapter/HttpMap.d.ts +39 -0
  60. package/esm/JBrowse1TextSeachAdapter/HttpMap.js +89 -0
  61. package/esm/JBrowse1TextSeachAdapter/HttpMap.js.map +1 -0
  62. package/esm/JBrowse1TextSeachAdapter/JBrowse1TextSearchAdapter.d.ts +33 -0
  63. package/esm/JBrowse1TextSeachAdapter/JBrowse1TextSearchAdapter.js +67 -0
  64. package/esm/JBrowse1TextSeachAdapter/JBrowse1TextSearchAdapter.js.map +1 -0
  65. package/esm/JBrowse1TextSeachAdapter/configSchema.d.ts +2 -0
  66. package/esm/JBrowse1TextSeachAdapter/configSchema.js +20 -0
  67. package/esm/JBrowse1TextSeachAdapter/configSchema.js.map +1 -0
  68. package/esm/JBrowse1TextSeachAdapter/index.d.ts +2 -0
  69. package/esm/JBrowse1TextSeachAdapter/index.js +3 -0
  70. package/esm/JBrowse1TextSeachAdapter/index.js.map +1 -0
  71. package/esm/NCListAdapter/NCListAdapter.d.ts +31 -0
  72. package/esm/NCListAdapter/NCListAdapter.js +62 -0
  73. package/esm/NCListAdapter/NCListAdapter.js.map +1 -0
  74. package/esm/NCListAdapter/NCListFeature.d.ts +31 -0
  75. package/esm/NCListAdapter/NCListFeature.js +78 -0
  76. package/esm/NCListAdapter/NCListFeature.js.map +1 -0
  77. package/esm/NCListAdapter/configSchema.d.ts +2 -0
  78. package/esm/NCListAdapter/configSchema.js +16 -0
  79. package/esm/NCListAdapter/configSchema.js.map +1 -0
  80. package/esm/NCListAdapter/index.d.ts +1 -0
  81. package/esm/NCListAdapter/index.js +2 -0
  82. package/esm/NCListAdapter/index.js.map +1 -0
  83. package/esm/index.d.ts +6 -0
  84. package/esm/index.js +50 -0
  85. package/esm/index.js.map +1 -0
  86. package/package.json +16 -7
  87. package/dist/JBrowse1TextSeachAdapter/HttpMap.test.js +0 -118
  88. package/dist/JBrowse1TextSeachAdapter/JBrowse1TextSearchAdapter.test.js +0 -98
  89. package/dist/NCListAdapter/NCListAdapter.test.js +0 -108
  90. package/dist/declare.d.js +0 -1
  91. package/dist/index.test.js +0 -44
@@ -1,30 +1,20 @@
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  "use strict";
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-
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- Object.defineProperty(exports, "__esModule", {
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- value: true
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- });
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- exports.default = void 0;
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-
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- var _models = require("@jbrowse/core/pluggableElementTypes/models");
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-
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- var _configuration = require("@jbrowse/core/configuration");
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-
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- var _default = (0, _configuration.ConfigurationSchema)('JBrowse1Connection', {
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- dataDirLocation: {
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- type: 'fileLocation',
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- defaultValue: {
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- uri: 'http://mysite.com/jbrowse/data/',
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- locationType: 'UriLocation'
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+ Object.defineProperty(exports, "__esModule", { value: true });
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+ var models_1 = require("@jbrowse/core/pluggableElementTypes/models");
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+ var configuration_1 = require("@jbrowse/core/configuration");
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+ exports.default = (0, configuration_1.ConfigurationSchema)('JBrowse1Connection', {
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+ dataDirLocation: {
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+ type: 'fileLocation',
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+ defaultValue: {
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+ uri: 'http://mysite.com/jbrowse/data/',
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+ locationType: 'UriLocation',
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+ },
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+ description: 'the location of the JBrowse 1 data directory, often something like http://mysite.com/jbrowse/data/',
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  },
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- description: 'the location of the JBrowse 1 data directory, often something like http://mysite.com/jbrowse/data/'
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- },
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- assemblyNames: {
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- description: 'name of the assembly the connection belongs to, should be a single entry',
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- type: 'stringArray',
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- defaultValue: []
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- }
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- }, {
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- baseConfiguration: _models.baseConnectionConfig
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- });
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-
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- exports.default = _default;
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+ assemblyNames: {
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+ description: 'name of the assembly the connection belongs to, should be a single entry',
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+ type: 'stringArray',
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+ defaultValue: [],
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+ },
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+ }, { baseConfiguration: models_1.baseConnectionConfig });
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+ //# sourceMappingURL=configSchema.js.map
@@ -0,0 +1 @@
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+ {"version":3,"file":"configSchema.js","sourceRoot":"","sources":["../../src/JBrowse1Connection/configSchema.ts"],"names":[],"mappings":";;AAAA,qEAAiF;AACjF,6DAAiE;AAEjE,kBAAe,IAAA,mCAAmB,EAChC,oBAAoB,EACpB;IACE,eAAe,EAAE;QACf,IAAI,EAAE,cAAc;QACpB,YAAY,EAAE;YACZ,GAAG,EAAE,iCAAiC;YACtC,YAAY,EAAE,aAAa;SAC5B;QACD,WAAW,EACT,oGAAoG;KACvG;IACD,aAAa,EAAE;QACb,WAAW,EACT,0EAA0E;QAC5E,IAAI,EAAE,aAAa;QACnB,YAAY,EAAE,EAAE;KACjB;CACF,EACD,EAAE,iBAAiB,EAAE,6BAAoB,EAAE,CAC5C,CAAA"}
@@ -1,23 +1,11 @@
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  "use strict";
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-
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- var _interopRequireDefault = require("@babel/runtime/helpers/interopRequireDefault");
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-
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- Object.defineProperty(exports, "__esModule", {
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- value: true
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- });
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- Object.defineProperty(exports, "configSchema", {
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- enumerable: true,
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- get: function get() {
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- return _configSchema.default;
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- }
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- });
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- Object.defineProperty(exports, "modelFactory", {
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- enumerable: true,
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- get: function get() {
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- return _model.default;
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- }
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- });
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-
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- var _model = _interopRequireDefault(require("./model"));
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-
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- var _configSchema = _interopRequireDefault(require("./configSchema"));
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+ var __importDefault = (this && this.__importDefault) || function (mod) {
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+ return (mod && mod.__esModule) ? mod : { "default": mod };
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+ };
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+ Object.defineProperty(exports, "__esModule", { value: true });
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+ exports.configSchema = exports.modelFactory = void 0;
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+ var model_1 = require("./model");
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+ Object.defineProperty(exports, "modelFactory", { enumerable: true, get: function () { return __importDefault(model_1).default; } });
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+ var configSchema_1 = require("./configSchema");
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+ Object.defineProperty(exports, "configSchema", { enumerable: true, get: function () { return __importDefault(configSchema_1).default; } });
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+ //# sourceMappingURL=index.js.map
@@ -0,0 +1 @@
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+ {"version":3,"file":"index.js","sourceRoot":"","sources":["../../src/JBrowse1Connection/index.ts"],"names":[],"mappings":";;;;;;AAAA,iCAAiD;AAAxC,sHAAA,OAAO,OAAgB;AAChC,+CAAwD;AAA/C,6HAAA,OAAO,OAAgB"}