@jbrowse/plugin-legacy-jbrowse 1.5.3 → 1.5.7

package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@jbrowse/plugin-legacy-jbrowse",
-  "version": "1.5.3",
+  "version": "1.5.7",
   "description": "JBrowse 2 plugin for connecting to and reading JBrowse 1 data",
   "keywords": [
     "jbrowse",
@@ -49,5 +49,5 @@
   "publishConfig": {
     "access": "public"
   },
-  "gitHead": "cea9023ebce8bbe5c08ae9e00c4e74fe3f02a7f1"
+  "gitHead": "b9b69276a6760ca01c7c7d905e2172b4adf9df8d"
 }

package/src/JBrowse1Connection/jb1ConfigLoad.ts

@@ -101,9 +101,6 @@ export async function createFinalConfig(
 
 export async function fetchConfigFile(location: JBLocation): Promise<Config> {
   const result = await openLocation(location).readFile('utf8')
-  if (typeof result !== 'string') {
-    throw new Error(`Error opening location: ${location}`)
-  }
   if (isUriLocation(location)) {
     return parseJb1(result, location.uri)
   }

package/src/JBrowse1Connection/jb1ToJb2.ts

@@ -500,7 +500,7 @@ export async function createRefSeqsAdapter(
       uri: refSeqs.url,
       locationType: 'UriLocation',
     }).readFile('utf8')
-    const refSeqsData: RefSeq[] = JSON.parse(refSeqsJson as string)
+    const refSeqsData: RefSeq[] = JSON.parse(refSeqsJson)
     return refSeqAdapterFromConfig(refSeqsData)
   }
   if ('data' in refSeqs) {

package/src/NCListAdapter/NCListFeature.ts

@@ -11,16 +11,12 @@ const jb1ToJb2 = { seq_id: 'refName' }
  * wrapper to adapt nclist features to act like jbrowse 2 features
  */
 export default class NCListFeature implements Feature {
-  // eslint-disable-next-line @typescript-eslint/no-explicit-any
-  private ncFeature: any
-
   private parentHandle?: Feature
 
   private uniqueId: string
 
   // eslint-disable-next-line @typescript-eslint/no-explicit-any
-  constructor(ncFeature: any, parent?: Feature, id?: string) {
-    this.ncFeature = ncFeature
+  constructor(private ncFeature: any, parent?: Feature, id?: string) {
     this.uniqueId = id || ncFeature.id()
     this.parentHandle = parent
   }