@jbrowse/plugin-hic 3.6.5 → 4.0.0

package/esm/LinearHicDisplay/renderSvg.js

@@ -0,0 +1,32 @@
+import { jsx as _jsx, Fragment as _Fragment, jsxs as _jsxs } from "react/jsx-runtime";
+import { getContainingView, getRpcSessionId, getSession, } from '@jbrowse/core/util';
+import { ReactRendering, renderingToSvg, } from '@jbrowse/core/util/offscreenCanvasUtils';
+import HicSVGColorLegend from "./components/HicSVGColorLegend.js";
+export async function renderSvg(self, opts) {
+    const view = getContainingView(self);
+    const session = getSession(self);
+    const { rpcManager } = session;
+    const height = opts.overrideHeight ?? self.height;
+    const { useLogScale, colorScheme, showLegend, adapterConfig } = self;
+    const { bpPerPx, dynamicBlocks } = view;
+    const regions = dynamicBlocks.contentBlocks;
+    if (!regions.length) {
+        return null;
+    }
+    const renderProps = self.renderProps();
+    const rpcSessionId = getRpcSessionId(self);
+    const rendering = (await rpcManager.call(rpcSessionId, 'CoreRender', {
+        sessionId: rpcSessionId,
+        rendererType: 'HicRenderer',
+        regions: [...regions],
+        adapterConfig,
+        bpPerPx,
+        ...renderProps,
+        exportSVG: opts,
+    }));
+    const finalRendering = await renderingToSvg(rendering, view.staticBlocks.totalWidthPx, height);
+    const visibleWidth = view.width;
+    const clipId = `clip-${self.id}-svg`;
+    const maxScore = rendering.maxScore ?? self.maxScore;
+    return (_jsxs(_Fragment, { children: [_jsx("defs", { children: _jsx("clipPath", { id: clipId, children: _jsx("rect", { x: 0, y: 0, width: visibleWidth, height: height }) }) }), _jsx("g", { clipPath: `url(#${clipId})`, children: _jsx("g", { transform: `translate(${Math.max(0, -view.offsetPx)} 0)`, children: _jsx(ReactRendering, { rendering: finalRendering }) }) }), showLegend && maxScore > 0 ? (_jsx(HicSVGColorLegend, { maxScore: maxScore, colorScheme: colorScheme, useLogScale: useLogScale, width: visibleWidth, legendAreaWidth: opts.legendWidth })) : null] }));
+}

package/esm/index.js

@@ -1,15 +1,12 @@
 import Plugin from '@jbrowse/core/Plugin';
 import { colord } from '@jbrowse/core/util/colord';
-import GuessAdapterF from './GuessAdapter';
-import HicAdapterF from './HicAdapter';
-import HicRendererF from './HicRenderer';
-import HicTrackF from './HicTrack';
-import LinearHicDisplayF from './LinearHicDisplay';
+import GuessAdapterF from "./GuessAdapter/index.js";
+import HicAdapterF from "./HicAdapter/index.js";
+import HicRendererF from "./HicRenderer/index.js";
+import HicTrackF from "./HicTrack/index.js";
+import LinearHicDisplayF from "./LinearHicDisplay/index.js";
 export default class HicPlugin extends Plugin {
-    constructor() {
-        super(...arguments);
-        this.name = 'HicPlugin';
-    }
+    name = 'HicPlugin';
     install(pluginManager) {
         HicAdapterF(pluginManager);
         HicRendererF(pluginManager);

package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@jbrowse/plugin-hic",
-  "version": "3.6.5",
+  "version": "4.0.0",
   "description": "JBrowse 2 hic adapters, tracks, etc.",
   "keywords": [
     "jbrowse",
@@ -15,45 +15,40 @@
     "directory": "plugins/hic"
   },
   "author": "JBrowse Team",
-  "distMain": "dist/index.js",
-  "srcMain": "src/index.ts",
-  "main": "dist/index.js",
+  "main": "esm/index.js",
   "files": [
-    "dist",
     "esm"
   ],
-  "scripts": {
-    "build": "npm-run-all build:*",
-    "test": "cd ../..; jest --passWithNoTests plugins/hic",
-    "prepublishOnly": "yarn test",
-    "prepack": "yarn build && yarn useDist",
-    "postpack": "yarn useSrc",
-    "useDist": "node ../../scripts/useDist.js",
-    "useSrc": "node ../../scripts/useSrc.js",
-    "prebuild": "npm run clean",
-    "build:esm": "tsc --build tsconfig.build.esm.json",
-    "build:commonjs": "tsc --build tsconfig.build.commonjs.json",
-    "clean": "rimraf dist esm *.tsbuildinfo"
-  },
   "dependencies": {
-    "@jbrowse/core": "^3.6.5",
-    "@jbrowse/plugin-linear-genome-view": "^3.6.5",
-    "@mui/material": "^7.0.0",
-    "@mui/x-charts-vendor": "^8.0.0",
-    "hic-straw": "^2.0.3",
-    "mobx": "^6.0.0",
-    "mobx-react": "^9.0.0",
-    "mobx-state-tree": "^5.0.0",
-    "rxjs": "^7.0.0"
+    "@jbrowse/mobx-state-tree": "^5.5.0",
+    "generic-filehandle2": "^2.0.18",
+    "@mui/x-charts-vendor": "^8.23.0",
+    "hic-straw": "^2.1.4",
+    "mobx": "^6.15.0",
+    "mobx-react": "^9.2.1",
+    "rxjs": "^7.8.2",
+    "@jbrowse/core": "^4.0.0",
+    "@jbrowse/plugin-linear-genome-view": "^4.0.0"
   },
   "peerDependencies": {
     "react": ">=18.0.0"
   },
-  "distModule": "esm/index.js",
-  "srcModule": "src/index.ts",
-  "module": "esm/index.js",
   "publishConfig": {
     "access": "public"
   },
-  "gitHead": "354d0a87b757b4d84f824b47507662f6f3a1693f"
-}
+  "sideEffects": false,
+  "scripts": {
+    "build": "pnpm run /^build:/",
+    "test": "cd ../..; jest --passWithNoTests plugins/hic",
+    "prebuild": "pnpm clean",
+    "build:esm": "tsc -p tsconfig.build.esm.json",
+    "clean": "rimraf esm *.tsbuildinfo"
+  },
+  "types": "esm/index.d.ts",
+  "exports": {
+    ".": {
+      "types": "./esm/index.d.ts",
+      "import": "./esm/index.js"
+    }
+  }
+}

package/dist/GuessAdapter/index.d.ts

@@ -1,2 +0,0 @@
-import type PluginManager from '@jbrowse/core/PluginManager';
-export default function GuessAdapterF(pluginManager: PluginManager): void;

package/dist/GuessAdapter/index.js

@@ -1,23 +0,0 @@
-"use strict";
-Object.defineProperty(exports, "__esModule", { value: true });
-exports.default = GuessAdapterF;
-const tracks_1 = require("@jbrowse/core/util/tracks");
-function GuessAdapterF(pluginManager) {
-    pluginManager.addToExtensionPoint('Core-guessAdapterForLocation', (adapterGuesser) => {
-        return (file, index, adapterHint) => {
-            const fileName = (0, tracks_1.getFileName)(file);
-            return (/\.hic$/i.test(fileName) && !adapterHint) ||
-                adapterHint === 'HicAdapter'
-                ? {
-                    type: 'HicAdapter',
-                    hicLocation: file,
-                }
-                : adapterGuesser(file, index, adapterHint);
-        };
-    });
-    pluginManager.addToExtensionPoint('Core-guessTrackTypeForLocation', (trackTypeGuesser) => {
-        return (adapterName) => adapterName === 'HicAdapter'
-            ? 'HicTrack'
-            : trackTypeGuesser(adapterName);
-    });
-}

package/dist/HicAdapter/HicAdapter.d.ts

@@ -1,27 +0,0 @@
-import { BaseFeatureDataAdapter } from '@jbrowse/core/data_adapters/BaseAdapter';
-import type PluginManager from '@jbrowse/core/PluginManager';
-import type { AnyConfigurationModel } from '@jbrowse/core/configuration';
-import type { BaseOptions } from '@jbrowse/core/data_adapters/BaseAdapter';
-import type { getSubAdapterType } from '@jbrowse/core/data_adapters/dataAdapterCache';
-import type { Region } from '@jbrowse/core/util/types';
-interface HicOptions extends BaseOptions {
-    resolution?: number;
-    bpPerPx?: number;
-    normalization?: string;
-}
-export default class HicAdapter extends BaseFeatureDataAdapter {
-    private hic;
-    constructor(config: AnyConfigurationModel, getSubAdapter?: getSubAdapterType, pluginManager?: PluginManager);
-    private setup;
-    getHeader(opts?: BaseOptions): Promise<{
-        norms: any;
-        resolutions: number[];
-    }>;
-    getRefNames(opts?: BaseOptions): Promise<string[]>;
-    getResolution(res: number, opts?: BaseOptions): Promise<number>;
-    getFeatures(region: Region, opts?: HicOptions): any;
-    getMultiRegionFeatureDensityStats(_regions: Region[]): Promise<{
-        featureDensity: number;
-    }>;
-}
-export {};

package/dist/HicAdapter/HicAdapter.js

@@ -1,63 +0,0 @@
-"use strict";
-var __importDefault = (this && this.__importDefault) || function (mod) {
-    return (mod && mod.__esModule) ? mod : { "default": mod };
-};
-Object.defineProperty(exports, "__esModule", { value: true });
-const BaseAdapter_1 = require("@jbrowse/core/data_adapters/BaseAdapter");
-const util_1 = require("@jbrowse/core/util");
-const rxjs_1 = require("@jbrowse/core/util/rxjs");
-const hic_straw_1 = __importDefault(require("hic-straw"));
-const HicFilehandle_1 = require("./HicFilehandle");
-class HicAdapter extends BaseAdapter_1.BaseFeatureDataAdapter {
-    constructor(config, getSubAdapter, pluginManager) {
-        super(config, getSubAdapter, pluginManager);
-        this.hic = new hic_straw_1.default({
-            file: (0, HicFilehandle_1.openHicFilehandle)(this.getConf('hicLocation'), this.pluginManager),
-        });
-    }
-    async setup(opts) {
-        const { statusCallback = () => { } } = opts || {};
-        return (0, util_1.updateStatus)('Downloading .hic header', statusCallback, () => this.hic.getMetaData());
-    }
-    async getHeader(opts) {
-        const { chromosomes, ...rest } = await this.setup(opts);
-        const norms = await this.hic.getNormalizationOptions();
-        return { ...rest, norms };
-    }
-    async getRefNames(opts) {
-        const metadata = await this.setup(opts);
-        return metadata.chromosomes.map(chr => chr.name);
-    }
-    async getResolution(res, opts) {
-        const { resolutions } = await this.setup(opts);
-        const resolutionMultiplier = this.getConf('resolutionMultiplier');
-        let chosenResolution = resolutions.at(-1);
-        for (let i = resolutions.length - 1; i >= 0; i -= 1) {
-            const r = resolutions[i];
-            if (r <= 2 * res * resolutionMultiplier) {
-                chosenResolution = r;
-            }
-        }
-        return chosenResolution;
-    }
-    getFeatures(region, opts = {}) {
-        return (0, rxjs_1.ObservableCreate)(async (observer) => {
-            const { refName: chr, start, end } = region;
-            const { resolution, normalization = 'KR', bpPerPx = 1, statusCallback = () => { }, } = opts;
-            const res = await this.getResolution(bpPerPx / (resolution || 1000), opts);
-            await (0, util_1.updateStatus)('Downloading .hic data', statusCallback, async () => {
-                const records = await this.hic.getContactRecords(normalization, { start, chr, end }, { start, chr, end }, 'BP', res);
-                for (const record of records) {
-                    observer.next(record);
-                }
-            });
-            observer.complete();
-        }, opts.stopToken);
-    }
-    async getMultiRegionFeatureDensityStats(_regions) {
-        return {
-            featureDensity: 0,
-        };
-    }
-}
-exports.default = HicAdapter;

package/dist/HicAdapter/HicFilehandle.d.ts

@@ -1,10 +0,0 @@
-import type PluginManager from '@jbrowse/core/PluginManager';
-import type { FileLocation } from '@jbrowse/core/util';
-import type { GenericFilehandle } from 'generic-filehandle2';
-declare class HicFilehandle {
-    private filehandle;
-    constructor(filehandle: GenericFilehandle);
-    read(position: number, length: number): Promise<ArrayBuffer>;
-}
-export declare function openHicFilehandle(location: FileLocation, pluginManager?: PluginManager): HicFilehandle;
-export {};

package/dist/HicAdapter/HicFilehandle.js

@@ -1,16 +0,0 @@
-"use strict";
-Object.defineProperty(exports, "__esModule", { value: true });
-exports.openHicFilehandle = openHicFilehandle;
-const io_1 = require("@jbrowse/core/util/io");
-class HicFilehandle {
-    constructor(filehandle) {
-        this.filehandle = filehandle;
-    }
-    async read(position, length) {
-        const buffer = await this.filehandle.read(length, position);
-        return buffer.buffer.slice(buffer.byteOffset, buffer.byteOffset + buffer.byteLength);
-    }
-}
-function openHicFilehandle(location, pluginManager) {
-    return new HicFilehandle((0, io_1.openLocation)(location, pluginManager));
-}

package/dist/HicAdapter/configSchema.d.ts

@@ -1,15 +0,0 @@
-declare const HicAdapter: import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
-    hicLocation: {
-        type: string;
-        defaultValue: {
-            uri: string;
-            locationType: string;
-        };
-    };
-    resolutionMultiplier: {
-        type: string;
-        defaultValue: number;
-        description: string;
-    };
-}, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, undefined>>;
-export default HicAdapter;

package/dist/HicAdapter/configSchema.js

@@ -1,32 +0,0 @@
-"use strict";
-Object.defineProperty(exports, "__esModule", { value: true });
-const configuration_1 = require("@jbrowse/core/configuration");
-function x() { }
-const HicAdapter = (0, configuration_1.ConfigurationSchema)('HicAdapter', {
-    hicLocation: {
-        type: 'fileLocation',
-        defaultValue: {
-            uri: '/path/to/my.hic',
-            locationType: 'UriLocation',
-        },
-    },
-    resolutionMultiplier: {
-        type: 'number',
-        defaultValue: 1,
-        description: 'Initial resolution multiplier',
-    },
-}, {
-    explicitlyTyped: true,
-    preProcessSnapshot: snap => {
-        return snap.uri
-            ? {
-                ...snap,
-                hicLocation: {
-                    uri: snap.uri,
-                    baseUri: snap.baseUri,
-                },
-            }
-            : snap;
-    },
-});
-exports.default = HicAdapter;

package/dist/HicAdapter/index.d.ts

@@ -1,2 +0,0 @@
-import type PluginManager from '@jbrowse/core/PluginManager';
-export default function HicAdapterF(pluginManager: PluginManager): void;

package/dist/HicAdapter/index.js

@@ -1,49 +0,0 @@
-"use strict";
-var __createBinding = (this && this.__createBinding) || (Object.create ? (function(o, m, k, k2) {
-    if (k2 === undefined) k2 = k;
-    var desc = Object.getOwnPropertyDescriptor(m, k);
-    if (!desc || ("get" in desc ? !m.__esModule : desc.writable || desc.configurable)) {
-      desc = { enumerable: true, get: function() { return m[k]; } };
-    }
-    Object.defineProperty(o, k2, desc);
-}) : (function(o, m, k, k2) {
-    if (k2 === undefined) k2 = k;
-    o[k2] = m[k];
-}));
-var __setModuleDefault = (this && this.__setModuleDefault) || (Object.create ? (function(o, v) {
-    Object.defineProperty(o, "default", { enumerable: true, value: v });
-}) : function(o, v) {
-    o["default"] = v;
-});
-var __importStar = (this && this.__importStar) || (function () {
-    var ownKeys = function(o) {
-        ownKeys = Object.getOwnPropertyNames || function (o) {
-            var ar = [];
-            for (var k in o) if (Object.prototype.hasOwnProperty.call(o, k)) ar[ar.length] = k;
-            return ar;
-        };
-        return ownKeys(o);
-    };
-    return function (mod) {
-        if (mod && mod.__esModule) return mod;
-        var result = {};
-        if (mod != null) for (var k = ownKeys(mod), i = 0; i < k.length; i++) if (k[i] !== "default") __createBinding(result, mod, k[i]);
-        __setModuleDefault(result, mod);
-        return result;
-    };
-})();
-var __importDefault = (this && this.__importDefault) || function (mod) {
-    return (mod && mod.__esModule) ? mod : { "default": mod };
-};
-Object.defineProperty(exports, "__esModule", { value: true });
-exports.default = HicAdapterF;
-const pluggableElementTypes_1 = require("@jbrowse/core/pluggableElementTypes");
-const configSchema_1 = __importDefault(require("./configSchema"));
-function HicAdapterF(pluginManager) {
-    pluginManager.addAdapterType(() => new pluggableElementTypes_1.AdapterType({
-        name: 'HicAdapter',
-        displayName: 'Hi-C adapter',
-        configSchema: configSchema_1.default,
-        getAdapterClass: () => Promise.resolve().then(() => __importStar(require('./HicAdapter'))).then(r => r.default),
-    }));
-}

package/dist/HicRenderer/HicRenderer.d.ts

@@ -1,54 +0,0 @@
-import ServerSideRendererType from '@jbrowse/core/pluggableElementTypes/renderers/ServerSideRendererType';
-import type { AnyConfigurationModel } from '@jbrowse/core/configuration';
-import type { BaseFeatureDataAdapter } from '@jbrowse/core/data_adapters/BaseAdapter';
-import type { RenderArgs as ServerSideRenderArgs, RenderArgsDeserialized as ServerSideRenderArgsDeserialized, ResultsDeserialized as ServerSideResultsDeserialized, ResultsSerialized as ServerSideResultsSerialized } from '@jbrowse/core/pluggableElementTypes/renderers/ServerSideRendererType';
-import type { Region } from '@jbrowse/core/util/types';
-interface HicFeature {
-    bin1: number;
-    bin2: number;
-    counts: number;
-}
-interface HicDataAdapter extends BaseFeatureDataAdapter {
-    getResolution: (bp: number) => Promise<number>;
-}
-export interface RenderArgs extends ServerSideRenderArgs {
-    regions: Region[];
-}
-export interface RenderArgsDeserialized extends ServerSideRenderArgsDeserialized {
-    regions: Region[];
-    dataAdapter: HicDataAdapter;
-    bpPerPx: number;
-    highResolutionScaling: number;
-    resolution: number;
-    adapterConfig: AnyConfigurationModel;
-    displayHeight?: number;
-}
-export interface RenderArgsDeserializedWithFeatures extends RenderArgsDeserialized {
-    features: HicFeature[];
-    statusCallback?: (arg: string) => void;
-}
-export type ResultsSerialized = ServerSideResultsSerialized;
-export type ResultsDeserialized = ServerSideResultsDeserialized;
-export default class HicRenderer extends ServerSideRendererType {
-    supportsSVG: boolean;
-    render(renderProps: RenderArgsDeserialized): Promise<{
-        height: number;
-        width: number;
-        canvasRecordedData: Record<string, unknown>;
-        reactElement?: React.ReactElement;
-        html?: string;
-    } | {
-        height: number;
-        width: number;
-        imageData: any;
-        reactElement?: React.ReactElement;
-        html?: string;
-    } | {
-        height: number;
-        width: number;
-        reactElement: React.ReactElement;
-        html?: string;
-    }>;
-    getFeatures(args: RenderArgsDeserialized): Promise<any>;
-}
-export type { RenderArgsSerialized, RenderResults, } from '@jbrowse/core/pluggableElementTypes/renderers/ServerSideRendererType';

package/dist/HicRenderer/HicRenderer.js

@@ -1,87 +0,0 @@
-"use strict";
-var __createBinding = (this && this.__createBinding) || (Object.create ? (function(o, m, k, k2) {
-    if (k2 === undefined) k2 = k;
-    var desc = Object.getOwnPropertyDescriptor(m, k);
-    if (!desc || ("get" in desc ? !m.__esModule : desc.writable || desc.configurable)) {
-      desc = { enumerable: true, get: function() { return m[k]; } };
-    }
-    Object.defineProperty(o, k2, desc);
-}) : (function(o, m, k, k2) {
-    if (k2 === undefined) k2 = k;
-    o[k2] = m[k];
-}));
-var __setModuleDefault = (this && this.__setModuleDefault) || (Object.create ? (function(o, v) {
-    Object.defineProperty(o, "default", { enumerable: true, value: v });
-}) : function(o, v) {
-    o["default"] = v;
-});
-var __importStar = (this && this.__importStar) || (function () {
-    var ownKeys = function(o) {
-        ownKeys = Object.getOwnPropertyNames || function (o) {
-            var ar = [];
-            for (var k in o) if (Object.prototype.hasOwnProperty.call(o, k)) ar[ar.length] = k;
-            return ar;
-        };
-        return ownKeys(o);
-    };
-    return function (mod) {
-        if (mod && mod.__esModule) return mod;
-        var result = {};
-        if (mod != null) for (var k = ownKeys(mod), i = 0; i < k.length; i++) if (k[i] !== "default") __createBinding(result, mod, k[i]);
-        __setModuleDefault(result, mod);
-        return result;
-    };
-})();
-var __importDefault = (this && this.__importDefault) || function (mod) {
-    return (mod && mod.__esModule) ? mod : { "default": mod };
-};
-Object.defineProperty(exports, "__esModule", { value: true });
-const dataAdapterCache_1 = require("@jbrowse/core/data_adapters/dataAdapterCache");
-const ServerSideRendererType_1 = __importDefault(require("@jbrowse/core/pluggableElementTypes/renderers/ServerSideRendererType"));
-const offscreenCanvasUtils_1 = require("@jbrowse/core/util/offscreenCanvasUtils");
-const rxjs_1 = require("rxjs");
-const operators_1 = require("rxjs/operators");
-class HicRenderer extends ServerSideRendererType_1.default {
-    constructor() {
-        super(...arguments);
-        this.supportsSVG = true;
-    }
-    async render(renderProps) {
-        const { displayHeight, regions, bpPerPx } = renderProps;
-        const region = regions[0];
-        const width = (region.end - region.start) / bpPerPx;
-        const hyp = width / 2;
-        const height = displayHeight !== null && displayHeight !== void 0 ? displayHeight : hyp;
-        const features = await this.getFeatures(renderProps);
-        const { makeImageData } = await Promise.resolve().then(() => __importStar(require('./makeImageData')));
-        const res = await (0, offscreenCanvasUtils_1.renderToAbstractCanvas)(width, height, renderProps, ctx => makeImageData(ctx, {
-            ...renderProps,
-            yScalar: height / Math.max(height, hyp),
-            features,
-            pluginManager: this.pluginManager,
-        }));
-        const results = await super.render({
-            ...renderProps,
-            ...res,
-            features,
-            region: renderProps.regions[0],
-            height,
-            width,
-        });
-        return {
-            ...results,
-            ...res,
-            height,
-            width,
-        };
-    }
-    async getFeatures(args) {
-        const { regions, sessionId, adapterConfig } = args;
-        const { dataAdapter } = await (0, dataAdapterCache_1.getAdapter)(this.pluginManager, sessionId, adapterConfig);
-        const features = await (0, rxjs_1.firstValueFrom)(dataAdapter
-            .getFeatures(regions[0], args)
-            .pipe((0, operators_1.toArray)()));
-        return features;
-    }
-}
-exports.default = HicRenderer;

package/dist/HicRenderer/components/HicRendering.d.ts

@@ -1,9 +0,0 @@
-import type { Region } from '@jbrowse/core/util/types';
-declare const HicRendering: (props: {
-    blockKey: string;
-    width: number;
-    height: number;
-    regions: Region[];
-    bpPerPx: number;
-}) => import("react/jsx-runtime").JSX.Element;
-export default HicRendering;

package/dist/HicRenderer/components/HicRendering.js

@@ -1,11 +0,0 @@
-"use strict";
-Object.defineProperty(exports, "__esModule", { value: true });
-const jsx_runtime_1 = require("react/jsx-runtime");
-const ui_1 = require("@jbrowse/core/ui");
-const mobx_react_1 = require("mobx-react");
-const HicRendering = (0, mobx_react_1.observer)(function HicRendering(props) {
-    const { width, height } = props;
-    const canvasWidth = Math.ceil(width);
-    return ((0, jsx_runtime_1.jsx)("div", { style: { position: 'relative', width: canvasWidth, height }, children: (0, jsx_runtime_1.jsx)(ui_1.PrerenderedCanvas, { ...props, style: { position: 'absolute', left: 0, top: 0 } }) }));
-});
-exports.default = HicRendering;

package/dist/HicRenderer/configSchema.d.ts

@@ -1,19 +0,0 @@
-declare const HicRenderer: import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
-    baseColor: {
-        type: string;
-        description: string;
-        defaultValue: string;
-    };
-    color: {
-        type: string;
-        description: string;
-        defaultValue: string;
-        contextVariable: string[];
-    };
-    maxHeight: {
-        type: string;
-        description: string;
-        defaultValue: number;
-    };
-}, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, undefined>>;
-export default HicRenderer;

package/dist/HicRenderer/configSchema.js

@@ -1,23 +0,0 @@
-"use strict";
-Object.defineProperty(exports, "__esModule", { value: true });
-const configuration_1 = require("@jbrowse/core/configuration");
-function x() { }
-const HicRenderer = (0, configuration_1.ConfigurationSchema)('HicRenderer', {
-    baseColor: {
-        type: 'color',
-        description: 'base color to be used in the hic alignment',
-        defaultValue: '#f00',
-    },
-    color: {
-        type: 'color',
-        description: 'the color of each feature in a hic alignment',
-        defaultValue: 'jexl:interpolate(count,scale)',
-        contextVariable: ['count', 'maxScore', 'baseColor', 'scale'],
-    },
-    maxHeight: {
-        type: 'integer',
-        description: 'the maximum height to be used in a hic rendering',
-        defaultValue: 600,
-    },
-}, { explicitlyTyped: true });
-exports.default = HicRenderer;

package/dist/HicRenderer/index.d.ts

@@ -1,2 +0,0 @@
-import type PluginManager from '@jbrowse/core/PluginManager';
-export default function HicRendererF(pluginManager: PluginManager): void;

package/dist/HicRenderer/index.js

@@ -1,17 +0,0 @@
-"use strict";
-var __importDefault = (this && this.__importDefault) || function (mod) {
-    return (mod && mod.__esModule) ? mod : { "default": mod };
-};
-Object.defineProperty(exports, "__esModule", { value: true });
-exports.default = HicRendererF;
-const HicRenderer_1 = __importDefault(require("./HicRenderer"));
-const HicRendering_1 = __importDefault(require("./components/HicRendering"));
-const configSchema_1 = __importDefault(require("./configSchema"));
-function HicRendererF(pluginManager) {
-    pluginManager.addRendererType(() => new HicRenderer_1.default({
-        name: 'HicRenderer',
-        ReactComponent: HicRendering_1.default,
-        configSchema: configSchema_1.default,
-        pluginManager,
-    }));
-}

package/dist/HicRenderer/makeImageData.d.ts

@@ -1,11 +0,0 @@
-import type { RenderArgsDeserializedWithFeatures } from './HicRenderer';
-import type PluginManager from '@jbrowse/core/PluginManager';
-import type { RenderArgs as ServerSideRenderArgs } from '@jbrowse/core/pluggableElementTypes/renderers/ServerSideRendererType';
-import type { Region } from '@jbrowse/core/util/types';
-export interface RenderArgs extends ServerSideRenderArgs {
-    regions: Region[];
-}
-export declare function makeImageData(ctx: CanvasRenderingContext2D, props: RenderArgsDeserializedWithFeatures & {
-    yScalar: number;
-    pluginManager: PluginManager;
-}): Promise<undefined>;