@jbrowse/plugin-hic 2.16.1 → 2.18.0

package/dist/LinearHicDisplay/model.d.ts

@@ -1,4 +1,4 @@
-import { AnyConfigurationSchemaType } from '@jbrowse/core/configuration';
+import type { AnyConfigurationSchemaType } from '@jbrowse/core/configuration';
 export default function stateModelFactory(configSchema: AnyConfigurationSchemaType): import("mobx-state-tree").IModelType<{
     id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
     type: import("mobx-state-tree").ISimpleType<string>;
@@ -11,25 +11,12 @@ export default function stateModelFactory(configSchema: AnyConfigurationSchemaTy
 } & {
     blockState: import("mobx-state-tree").IMapType<import("mobx-state-tree").IModelType<{
         key: import("mobx-state-tree").ISimpleType<string>;
-        region: import("mobx-state-tree").IModelType<{
-            refName: import("mobx-state-tree" /**
-             * #property
-             */).ISimpleType<string>;
-            start: import("mobx-state-tree").ISimpleType<number>;
-            end: import("mobx-state-tree").ISimpleType<number>;
-            reversed: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<boolean>, [undefined]>;
-        } & {
-            assemblyName: import("mobx-state-tree" /**
-             * #property
-             */).ISimpleType<string>;
-        }, {
-            setRefName(newRefName: string): void;
-        }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>;
+        region: import("mobx-state-tree").IType<import("@jbrowse/core/util").Region, import("@jbrowse/core/util").Region, import("@jbrowse/core/util").Region>;
         reloadFlag: import("mobx-state-tree").IType<number | undefined, number, number>;
         isLeftEndOfDisplayedRegion: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
         isRightEndOfDisplayedRegion: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
     }, {
-        renderInProgress: AbortController | undefined;
+        stopToken: string | undefined;
         filled: boolean;
         reactElement: React.ReactElement | undefined;
         features: Map<string, import("@jbrowse/core/util").Feature> | undefined;
@@ -44,13 +31,7 @@ export default function stateModelFactory(configSchema: AnyConfigurationSchemaTy
                 reload: () => void;
                 message: React.ReactNode;
                 filled?: boolean;
-                status
-                /**
-                 * #getter
-                 */
-                ? /**
-                 * #getter
-                 */: string;
+                status?: string;
                 reactElement?: React.ReactElement;
             };
         }) => import("react").JSX.Element | undefined;
@@ -59,15 +40,9 @@ export default function stateModelFactory(configSchema: AnyConfigurationSchemaTy
         doReload(): void;
         afterAttach(): void;
         setStatus(message: string): void;
-        setLoading(abortController: AbortController): void;
+        setLoading(newStopToken: string): void;
         setMessage(messageText: string): void;
-        setRendered(props: {
-            reactElement: React.ReactElement;
-            features: Map<string, import("@jbrowse/core/util").Feature>;
-            layout: any;
-            maxHeightReached: boolean;
-            renderProps: any;
-        } | undefined): void;
+        setRendered(props: import("@jbrowse/plugin-linear-genome-view/src/BaseLinearDisplay/models/serverSideRenderedBlock").RenderedProps | undefined): void;
         setError(error: unknown): void;
         reload(): void;
         beforeDestroy(): void;
@@ -121,9 +96,7 @@ export default function stateModelFactory(configSchema: AnyConfigurationSchemaTy
             rendererTypeName: string;
             error: unknown;
             message: string | undefined;
-        } & import("mobx-state-tree" /**
-         * #property
-         */).IStateTreeNode<import("mobx-state-tree").IModelType<{
+        } & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
             id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
             type: import("mobx-state-tree").ISimpleType<string>;
             rpcDriverName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
@@ -131,9 +104,7 @@ export default function stateModelFactory(configSchema: AnyConfigurationSchemaTy
             rendererTypeName: string;
             error: unknown;
             message: string | undefined;
-        }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree" /**
-         * #method
-         */)._NotCustomized>>;
+        }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
         onHorizontalScroll?: () => void;
         blockState?: Record<string, any>;
     }>;
@@ -200,6 +171,7 @@ export default function stateModelFactory(configSchema: AnyConfigurationSchemaTy
     readonly regionTooLarge: boolean;
     readonly regionTooLargeReason: string;
 } & {
+    readonly statsReadyAndRegionNotTooLarge: boolean;
     regionCannotBeRenderedText(_region: import("@jbrowse/core/util").Region): "" | "Force load to see features";
     regionCannotBeRendered(_region: import("@jbrowse/core/util").Region): import("react").JSX.Element | null;
 } & {
@@ -237,48 +209,18 @@ export default function stateModelFactory(configSchema: AnyConfigurationSchemaTy
     renderSvg(opts: import("@jbrowse/plugin-linear-genome-view").ExportSvgDisplayOptions): Promise<import("react").JSX.Element>;
     afterAttach(): void;
 } & {
-    /**
-     * #volatile
-     */
     availableNormalizations: string[] | undefined;
 } & {
-    /**
-     * #getter
-     */
     readonly blockType: string;
-    /**
-     * #getter
-     */
     readonly rendererTypeName: string;
-    /**
-     * #method
-     */
     renderProps(): any;
 } & {
-    /**
-     * #action
-     */
     setResolution(n: number): void;
-    /**
-     * #action
-     */
     setUseLogScale(f: boolean): void;
-    /**
-     * #action
-     */
     setColorScheme(f?: string): void;
-    /**
-     * #action
-     */
     setActiveNormalization(f: string): void;
-    /**
-     * #action
-     */
     setAvailableNormalizations(f: string[]): void;
 } & {
-    /**
-     * #getter
-     */
     trackMenuItems(): (import("@jbrowse/core/ui").MenuDivider | import("@jbrowse/core/ui").MenuSubHeader | import("@jbrowse/core/ui").NormalMenuItem | import("@jbrowse/core/ui").CheckboxMenuItem | import("@jbrowse/core/ui").RadioMenuItem | import("@jbrowse/core/ui").SubMenuItem | {
         label: string;
         type: string;
@@ -322,21 +264,12 @@ export default function stateModelFactory(configSchema: AnyConfigurationSchemaTy
 } & {
     blockState: import("mobx-state-tree").IMapType<import("mobx-state-tree").IModelType<{
         key: import("mobx-state-tree").ISimpleType<string>;
-        region: import("mobx-state-tree").IModelType<{
-            refName: import("mobx-state-tree").ISimpleType<string>;
-            start: import("mobx-state-tree").ISimpleType<number>;
-            end: import("mobx-state-tree").ISimpleType<number>;
-            reversed: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<boolean>, [undefined]>;
-        } & {
-            assemblyName: import("mobx-state-tree").ISimpleType<string>;
-        }, {
-            setRefName(newRefName: string): void;
-        }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>;
+        region: import("mobx-state-tree").IType<import("@jbrowse/core/util").Region, import("@jbrowse/core/util").Region, import("@jbrowse/core/util").Region>;
         reloadFlag: import("mobx-state-tree").IType<number | undefined, number, number>;
         isLeftEndOfDisplayedRegion: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
         isRightEndOfDisplayedRegion: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
     }, {
-        renderInProgress: AbortController | undefined;
+        stopToken: string | undefined;
         filled: boolean;
         reactElement: React.ReactElement | undefined;
         features: Map<string, import("@jbrowse/core/util").Feature> | undefined;
@@ -351,13 +284,7 @@ export default function stateModelFactory(configSchema: AnyConfigurationSchemaTy
                 reload: () => void;
                 message: React.ReactNode;
                 filled?: boolean;
-                status
-                /**
-                 * #getter
-                 */
-                ? /**
-                 * #getter
-                 */: string;
+                status?: string;
                 reactElement?: React.ReactElement;
             };
         }) => import("react").JSX.Element | undefined;
@@ -366,15 +293,9 @@ export default function stateModelFactory(configSchema: AnyConfigurationSchemaTy
         doReload(): void;
         afterAttach(): void;
         setStatus(message: string): void;
-        setLoading(abortController: AbortController): void;
+        setLoading(newStopToken: string): void;
         setMessage(messageText: string): void;
-        setRendered(props: {
-            reactElement: React.ReactElement;
-            features: Map<string, import("@jbrowse/core/util").Feature>;
-            layout: any;
-            maxHeightReached: boolean;
-            renderProps: any;
-        } | undefined): void;
+        setRendered(props: import("@jbrowse/plugin-linear-genome-view/src/BaseLinearDisplay/models/serverSideRenderedBlock").RenderedProps | undefined): void;
         setError(error: unknown): void;
         reload(): void;
         beforeDestroy(): void;
@@ -411,8 +332,8 @@ export default function stateModelFactory(configSchema: AnyConfigurationSchemaTy
     type: string;
     id: string;
     configuration: import("mobx-state-tree").ModelSnapshotType<Record<string, any>>;
-    heightPreConfig: number | undefined;
     rpcDriverName: string | undefined;
+    heightPreConfig: number | undefined;
     userBpPerPxLimit: number | undefined;
     userByteSizeLimit: number | undefined;
 } & import("mobx-state-tree")._NotCustomized>;

package/dist/LinearHicDisplay/model.js

@@ -2,72 +2,36 @@
 Object.defineProperty(exports, "__esModule", { value: true });
 exports.default = stateModelFactory;
 const configuration_1 = require("@jbrowse/core/configuration");
+const util_1 = require("@jbrowse/core/util");
 const plugin_linear_genome_view_1 = require("@jbrowse/plugin-linear-genome-view");
-const mobx_state_tree_1 = require("mobx-state-tree");
 const mobx_1 = require("mobx");
-const util_1 = require("@jbrowse/core/util");
-/**
- * #stateModel LinearHicDisplay
- * #category display
- * extends `BaseLinearDisplay`
- */
-function x() { } // eslint-disable-line @typescript-eslint/no-unused-vars
+const mobx_state_tree_1 = require("mobx-state-tree");
+function x() { }
 function stateModelFactory(configSchema) {
     return mobx_state_tree_1.types
         .compose('LinearHicDisplay', plugin_linear_genome_view_1.BaseLinearDisplay, mobx_state_tree_1.types.model({
-        /**
-         * #property
-         */
         type: mobx_state_tree_1.types.literal('LinearHicDisplay'),
-        /**
-         * #property
-         */
         configuration: (0, configuration_1.ConfigurationReference)(configSchema),
-        /**
-         * #property
-         */
         resolution: mobx_state_tree_1.types.optional(mobx_state_tree_1.types.number, 1),
-        /**
-         * #property
-         */
         useLogScale: false,
-        /**
-         * #property
-         */
         colorScheme: mobx_state_tree_1.types.maybe(mobx_state_tree_1.types.string),
-        /**
-         * #property
-         */
         activeNormalization: 'KR',
     }))
         .volatile(() => ({
-        /**
-         * #volatile
-         */
         availableNormalizations: undefined,
     }))
         .views(self => {
         const { renderProps: superRenderProps } = self;
         return {
-            /**
-             * #getter
-             */
             get blockType() {
                 return 'dynamicBlocks';
             },
-            /**
-             * #getter
-             */
             get rendererTypeName() {
                 return 'HicRenderer';
             },
-            /**
-             * #method
-             */
             renderProps() {
                 const config = self.rendererType.configSchema.create({
                     ...(0, configuration_1.getConf)(self, 'renderer'),
-                    // add specific jexl color callback when using pre-defined color schemes
                     ...(self.colorScheme
                         ? { color: 'jexl:interpolate(count,scale)' }
                         : {}),
@@ -86,33 +50,18 @@ function stateModelFactory(configSchema) {
         };
     })
         .actions(self => ({
-        /**
-         * #action
-         */
         setResolution(n) {
             self.resolution = n;
         },
-        /**
-         * #action
-         */
         setUseLogScale(f) {
             self.useLogScale = f;
         },
-        /**
-         * #action
-         */
         setColorScheme(f) {
             self.colorScheme = f;
         },
-        /**
-         * #action
-         */
         setActiveNormalization(f) {
             self.activeNormalization = f;
         },
-        /**
-         * #action
-         */
         setAvailableNormalizations(f) {
             self.availableNormalizations = f;
         },
@@ -120,9 +69,6 @@ function stateModelFactory(configSchema) {
         .views(self => {
         const { trackMenuItems: superTrackMenuItems } = self;
         return {
-            /**
-             * #getter
-             */
             trackMenuItems() {
                 return [
                     ...superTrackMenuItems(),

package/dist/index.d.ts

@@ -1,5 +1,5 @@
 import Plugin from '@jbrowse/core/Plugin';
-import PluginManager from '@jbrowse/core/PluginManager';
+import type PluginManager from '@jbrowse/core/PluginManager';
 export default class HicPlugin extends Plugin {
     name: string;
     install(pluginManager: PluginManager): void;

package/dist/index.js

@@ -6,11 +6,10 @@ Object.defineProperty(exports, "__esModule", { value: true });
 const Plugin_1 = __importDefault(require("@jbrowse/core/Plugin"));
 const colord_1 = require("@jbrowse/core/util/colord");
 const tracks_1 = require("@jbrowse/core/util/tracks");
-// locals
+const HicAdapter_1 = __importDefault(require("./HicAdapter"));
 const HicRenderer_1 = __importDefault(require("./HicRenderer"));
 const HicTrack_1 = __importDefault(require("./HicTrack"));
 const LinearHicDisplay_1 = __importDefault(require("./LinearHicDisplay"));
-const HicAdapter_1 = __importDefault(require("./HicAdapter"));
 class HicPlugin extends Plugin_1.default {
     constructor() {
         super(...arguments);

package/esm/HicAdapter/HicAdapter.d.ts

@@ -1,8 +1,9 @@
-import { BaseFeatureDataAdapter, BaseOptions } from '@jbrowse/core/data_adapters/BaseAdapter';
-import { Region } from '@jbrowse/core/util/types';
-import PluginManager from '@jbrowse/core/PluginManager';
-import { getSubAdapterType } from '@jbrowse/core/data_adapters/dataAdapterCache';
-import { AnyConfigurationModel } from '@jbrowse/core/configuration';
+import { BaseFeatureDataAdapter } from '@jbrowse/core/data_adapters/BaseAdapter';
+import type PluginManager from '@jbrowse/core/PluginManager';
+import type { AnyConfigurationModel } from '@jbrowse/core/configuration';
+import type { BaseOptions } from '@jbrowse/core/data_adapters/BaseAdapter';
+import type { getSubAdapterType } from '@jbrowse/core/data_adapters/dataAdapterCache';
+import type { Region } from '@jbrowse/core/util/types';
 interface HicOptions extends BaseOptions {
     resolution?: number;
     bpPerPx?: number;

package/esm/HicAdapter/HicAdapter.js

@@ -1,8 +1,7 @@
-import { BaseFeatureDataAdapter, } from '@jbrowse/core/data_adapters/BaseAdapter';
+import { BaseFeatureDataAdapter } from '@jbrowse/core/data_adapters/BaseAdapter';
+import { updateStatus } from '@jbrowse/core/util';
 import { ObservableCreate } from '@jbrowse/core/util/rxjs';
 import HicStraw from 'hic-straw';
-import { updateStatus } from '@jbrowse/core/util';
-// locals
 import { openHicFilehandle } from './HicFilehandle';
 export default class HicAdapter extends BaseFeatureDataAdapter {
     constructor(config, getSubAdapter, pluginManager) {
@@ -17,7 +16,6 @@ export default class HicAdapter extends BaseFeatureDataAdapter {
     }
     async getHeader(opts) {
         const { chromosomes, ...rest } = await this.setup(opts);
-        // @ts-expect-error
         const norms = await this.hic.getNormalizationOptions();
         return { ...rest, norms };
     }
@@ -49,13 +47,12 @@ export default class HicAdapter extends BaseFeatureDataAdapter {
                 }
             });
             observer.complete();
-        }, opts.signal);
+        }, opts.stopToken);
     }
-    // don't do feature stats estimation, similar to bigwigadapter
     async getMultiRegionFeatureDensityStats(_regions) {
         return {
             featureDensity: 0,
         };
     }
-    freeResources( /* { region } */) { }
+    freeResources() { }
 }

package/esm/HicAdapter/HicFilehandle.d.ts

@@ -1,6 +1,6 @@
-import { FileLocation } from '@jbrowse/core/util';
+import type PluginManager from '@jbrowse/core/PluginManager';
+import type { FileLocation } from '@jbrowse/core/util';
 import type { GenericFilehandle } from 'generic-filehandle';
-import PluginManager from '@jbrowse/core/PluginManager';
 declare class HicFilehandle {
     private filehandle;
     constructor(filehandle: GenericFilehandle);

package/esm/HicAdapter/HicFilehandle.js

@@ -1,10 +1,5 @@
-import { openLocation } from '@jbrowse/core/util/io';
 import { Buffer } from 'buffer';
-// wraps generic-filehandle so the read function only takes a position and
-// length
-//
-// in some ways, generic-filehandle wishes it was just this but it has
-// to adapt to the node.js fs promises API
+import { openLocation } from '@jbrowse/core/util/io';
 class HicFilehandle {
     constructor(filehandle) {
         this.filehandle = filehandle;

package/esm/HicAdapter/configSchema.d.ts

@@ -1,7 +1,4 @@
 declare const HicAdapter: import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
-    /**
-     * #slot
-     */
     hicLocation: {
         type: string;
         defaultValue: {
@@ -9,9 +6,6 @@ declare const HicAdapter: import("@jbrowse/core/configuration/configurationSchem
             locationType: string;
         };
     };
-    /**
-     * #slot
-     */
     resolutionMultiplier: {
         type: string;
         defaultValue: number;

package/esm/HicAdapter/configSchema.js

@@ -1,13 +1,6 @@
 import { ConfigurationSchema } from '@jbrowse/core/configuration';
-/**
- * #config HicAdapter
- * #category adapter
- */
-function x() { } // eslint-disable-line @typescript-eslint/no-unused-vars
+function x() { }
 const HicAdapter = ConfigurationSchema('HicAdapter', {
-    /**
-     * #slot
-     */
     hicLocation: {
         type: 'fileLocation',
         defaultValue: {
@@ -15,9 +8,6 @@ const HicAdapter = ConfigurationSchema('HicAdapter', {
             locationType: 'UriLocation',
         },
     },
-    /**
-     * #slot
-     */
     resolutionMultiplier: {
         type: 'number',
         defaultValue: 1,

package/esm/HicAdapter/index.d.ts

@@ -1,2 +1,2 @@
-import PluginManager from '@jbrowse/core/PluginManager';
+import type PluginManager from '@jbrowse/core/PluginManager';
 export default function HicAdapterF(pluginManager: PluginManager): void;

package/esm/HicRenderer/HicRenderer.d.ts

@@ -1,7 +1,8 @@
-import ServerSideRendererType, { RenderArgs as ServerSideRenderArgs, RenderArgsDeserialized as ServerSideRenderArgsDeserialized, ResultsSerialized as ServerSideResultsSerialized, ResultsDeserialized as ServerSideResultsDeserialized } from '@jbrowse/core/pluggableElementTypes/renderers/ServerSideRendererType';
-import { Region } from '@jbrowse/core/util/types';
-import { BaseFeatureDataAdapter } from '@jbrowse/core/data_adapters/BaseAdapter';
-import { AnyConfigurationModel } from '@jbrowse/core/configuration';
+import ServerSideRendererType from '@jbrowse/core/pluggableElementTypes/renderers/ServerSideRendererType';
+import type { AnyConfigurationModel } from '@jbrowse/core/configuration';
+import type { BaseFeatureDataAdapter } from '@jbrowse/core/data_adapters/BaseAdapter';
+import type { RenderArgs as ServerSideRenderArgs, RenderArgsDeserialized as ServerSideRenderArgsDeserialized, ResultsDeserialized as ServerSideResultsDeserialized, ResultsSerialized as ServerSideResultsSerialized } from '@jbrowse/core/pluggableElementTypes/renderers/ServerSideRendererType';
+import type { Region } from '@jbrowse/core/util/types';
 interface HicFeature {
     bin1: number;
     bin2: number;

package/esm/HicRenderer/HicRenderer.js

@@ -1,9 +1,9 @@
-import ServerSideRendererType from '@jbrowse/core/pluggableElementTypes/renderers/ServerSideRendererType';
-import { renderToAbstractCanvas } from '@jbrowse/core/util/offscreenCanvasUtils';
-import { toArray } from 'rxjs/operators';
 import { readConfObject } from '@jbrowse/core/configuration';
 import { getAdapter } from '@jbrowse/core/data_adapters/dataAdapterCache';
+import ServerSideRendererType from '@jbrowse/core/pluggableElementTypes/renderers/ServerSideRendererType';
+import { renderToAbstractCanvas } from '@jbrowse/core/util/offscreenCanvasUtils';
 import { firstValueFrom } from 'rxjs';
+import { toArray } from 'rxjs/operators';
 export default class HicRenderer extends ServerSideRendererType {
     constructor() {
         super(...arguments);
@@ -42,9 +42,6 @@ export default class HicRenderer extends ServerSideRendererType {
         const features = await firstValueFrom(dataAdapter
             .getFeatures(regions[0], args)
             .pipe(toArray()));
-        // cast to any to avoid return-type conflict, because the
-        // types of features returned by our getFeatures are quite
-        // different from the base interface
         return features;
     }
 }

package/esm/HicRenderer/components/HicRendering.d.ts

@@ -1,5 +1,5 @@
 import React from 'react';
-import { Region } from '@jbrowse/core/util/types';
+import type { Region } from '@jbrowse/core/util/types';
 declare const HicRendering: (props: {
     blockKey: string;
     width: number;

package/esm/HicRenderer/components/HicRendering.js

@@ -4,7 +4,6 @@ import { observer } from 'mobx-react';
 const HicRendering = observer(function HicRendering(props) {
     const { width, height } = props;
     const canvasWidth = Math.ceil(width);
-    // need to call this in render so we get the right observer behavior
     return (React.createElement("div", { style: { position: 'relative', width: canvasWidth, height } },
         React.createElement(PrerenderedCanvas, { ...props, style: { position: 'absolute', left: 0, top: 0 } })));
 });

package/esm/HicRenderer/configSchema.d.ts

@@ -1,24 +1,15 @@
 declare const HicRenderer: import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
-    /**
-     * #slot
-     */
     baseColor: {
         type: string;
         description: string;
         defaultValue: string;
     };
-    /**
-     * #slot
-     */
     color: {
         type: string;
         description: string;
         defaultValue: string;
         contextVariable: string[];
     };
-    /**
-     * #slot
-     */
     maxHeight: {
         type: string;
         description: string;

package/esm/HicRenderer/configSchema.js

@@ -1,30 +1,17 @@
 import { ConfigurationSchema } from '@jbrowse/core/configuration';
-/**
- * #config HicRenderer
- * #category renderer
- */
-function x() { } // eslint-disable-line @typescript-eslint/no-unused-vars
+function x() { }
 const HicRenderer = ConfigurationSchema('HicRenderer', {
-    /**
-     * #slot
-     */
     baseColor: {
         type: 'color',
         description: 'base color to be used in the hic alignment',
         defaultValue: '#f00',
     },
-    /**
-     * #slot
-     */
     color: {
         type: 'color',
         description: 'the color of each feature in a hic alignment',
         defaultValue: 'jexl:interpolate(count,scale)',
         contextVariable: ['count', 'maxScore', 'baseColor', 'scale'],
     },
-    /**
-     * #slot
-     */
     maxHeight: {
         type: 'integer',
         description: 'the maximum height to be used in a hic rendering',

package/esm/HicRenderer/index.d.ts

@@ -1,2 +1,2 @@
-import PluginManager from '@jbrowse/core/PluginManager';
+import type PluginManager from '@jbrowse/core/PluginManager';
 export default function HicRendererF(pluginManager: PluginManager): void;

package/esm/HicRenderer/index.js

@@ -1,6 +1,6 @@
+import HicRenderer from './HicRenderer';
 import ReactComponent from './components/HicRendering';
 import configSchema from './configSchema';
-import HicRenderer from './HicRenderer';
 export default function HicRendererF(pluginManager) {
     pluginManager.addRendererType(() => new HicRenderer({
         name: 'HicRenderer',

package/esm/HicRenderer/makeImageData.d.ts

@@ -1,7 +1,7 @@
-import { RenderArgs as ServerSideRenderArgs } from '@jbrowse/core/pluggableElementTypes/renderers/ServerSideRendererType';
-import { Region } from '@jbrowse/core/util/types';
-import PluginManager from '@jbrowse/core/PluginManager';
-import { RenderArgsDeserializedWithFeatures } from './HicRenderer';
+import type { RenderArgsDeserializedWithFeatures } from './HicRenderer';
+import type PluginManager from '@jbrowse/core/PluginManager';
+import type { RenderArgs as ServerSideRenderArgs } from '@jbrowse/core/pluggableElementTypes/renderers/ServerSideRendererType';
+import type { Region } from '@jbrowse/core/util/types';
 export interface RenderArgs extends ServerSideRenderArgs {
     regions: Region[];
 }