@jbrowse/plugin-hic 2.12.0 → 2.12.2

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Files changed (11) hide show
  1. package/dist/HicAdapter/HicAdapter.js +1 -2
  2. package/dist/HicAdapter/index.js +1 -1
  3. package/dist/HicRenderer/HicRenderer.d.ts +5 -6
  4. package/dist/HicRenderer/index.js +1 -1
  5. package/dist/HicTrack/index.js +1 -1
  6. package/dist/LinearHicDisplay/index.js +1 -1
  7. package/dist/LinearHicDisplay/model.d.ts +50 -61
  8. package/dist/LinearHicDisplay/model.js +1 -1
  9. package/esm/HicRenderer/HicRenderer.d.ts +5 -6
  10. package/esm/LinearHicDisplay/model.d.ts +50 -61
  11. package/package.json +2 -2
package/dist/HicAdapter/HicAdapter.js CHANGED
@@ -3,7 +3,7 @@ var __importDefault = (this && this.__importDefault) || function (mod) {
3
3
  return (mod && mod.__esModule) ? mod : { "default": mod };
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  };
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  Object.defineProperty(exports, "__esModule", { value: true });
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- exports.openFilehandleWrapper = void 0;
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+ exports.openFilehandleWrapper = openFilehandleWrapper;
7
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  const BaseAdapter_1 = require("@jbrowse/core/data_adapters/BaseAdapter");
8
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  const rxjs_1 = require("@jbrowse/core/util/rxjs");
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  const io_1 = require("@jbrowse/core/util/io");
@@ -23,7 +23,6 @@ class GenericFilehandleWrapper {
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  function openFilehandleWrapper(location, pluginManager) {
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  return new GenericFilehandleWrapper((0, io_1.openLocation)(location, pluginManager));
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  }
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- exports.openFilehandleWrapper = openFilehandleWrapper;
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  class HicAdapter extends BaseAdapter_1.BaseFeatureDataAdapter {
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  constructor(config, getSubAdapter, pluginManager) {
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  super(config, getSubAdapter, pluginManager);
package/dist/HicAdapter/index.js CHANGED
@@ -26,6 +26,7 @@ var __importDefault = (this && this.__importDefault) || function (mod) {
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  return (mod && mod.__esModule) ? mod : { "default": mod };
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  };
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  Object.defineProperty(exports, "__esModule", { value: true });
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+ exports.default = HicAdapterF;
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  const pluggableElementTypes_1 = require("@jbrowse/core/pluggableElementTypes");
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  const configSchema_1 = __importDefault(require("./configSchema"));
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  function HicAdapterF(pluginManager) {
@@ -36,4 +37,3 @@ function HicAdapterF(pluginManager) {
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  getAdapterClass: () => Promise.resolve().then(() => __importStar(require('./HicAdapter'))).then(r => r.default),
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  }));
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  }
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- exports.default = HicAdapterF;
package/dist/HicRenderer/HicRenderer.d.ts CHANGED
@@ -1,4 +1,3 @@
1
- /// <reference types="react" />
2
1
  import ServerSideRendererType, { RenderArgs as ServerSideRenderArgs, RenderArgsDeserialized as ServerSideRenderArgsDeserialized, ResultsSerialized as ServerSideResultsSerialized, ResultsDeserialized as ServerSideResultsDeserialized } from '@jbrowse/core/pluggableElementTypes/renderers/ServerSideRendererType';
3
2
  import { Region } from '@jbrowse/core/util/types';
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  import { BaseFeatureDataAdapter } from '@jbrowse/core/data_adapters/BaseAdapter';
@@ -34,19 +33,19 @@ export default class HicRenderer extends ServerSideRendererType {
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  height: any;
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  width: number;
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  canvasRecordedData: any;
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- reactElement?: import("react").ReactElement<any, string | import("react").JSXElementConstructor<any>> | undefined;
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- html?: string | undefined;
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+ reactElement?: import("react").ReactElement;
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+ html?: string;
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  } | {
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  height: any;
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  width: number;
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  reactElement: import("react").JSX.Element;
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- html?: string | undefined;
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+ html?: string;
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  } | {
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  height: any;
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  width: number;
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  imageData: any;
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- reactElement?: import("react").ReactElement<any, string | import("react").JSXElementConstructor<any>> | undefined;
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- html?: string | undefined;
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+ reactElement?: import("react").ReactElement;
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+ html?: string;
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  }>;
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  getFeatures(args: RenderArgsDeserialized): Promise<any>;
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  }
package/dist/HicRenderer/index.js CHANGED
@@ -3,6 +3,7 @@ var __importDefault = (this && this.__importDefault) || function (mod) {
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  return (mod && mod.__esModule) ? mod : { "default": mod };
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  };
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  Object.defineProperty(exports, "__esModule", { value: true });
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+ exports.default = HicRendererF;
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  const HicRendering_1 = __importDefault(require("./components/HicRendering"));
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  const configSchema_1 = __importDefault(require("./configSchema"));
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  const HicRenderer_1 = __importDefault(require("./HicRenderer"));
@@ -14,4 +15,3 @@ function HicRendererF(pluginManager) {
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  pluginManager,
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  }));
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  }
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- exports.default = HicRendererF;
package/dist/HicTrack/index.js CHANGED
@@ -3,6 +3,7 @@ var __importDefault = (this && this.__importDefault) || function (mod) {
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  return (mod && mod.__esModule) ? mod : { "default": mod };
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  };
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  Object.defineProperty(exports, "__esModule", { value: true });
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+ exports.default = HicTrackF;
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  const TrackType_1 = __importDefault(require("@jbrowse/core/pluggableElementTypes/TrackType"));
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  const models_1 = require("@jbrowse/core/pluggableElementTypes/models");
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  const configSchema_1 = __importDefault(require("./configSchema"));
@@ -17,4 +18,3 @@ function HicTrackF(pluginManager) {
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  });
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  });
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  }
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- exports.default = HicTrackF;
package/dist/LinearHicDisplay/index.js CHANGED
@@ -3,6 +3,7 @@ var __importDefault = (this && this.__importDefault) || function (mod) {
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  return (mod && mod.__esModule) ? mod : { "default": mod };
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  };
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  Object.defineProperty(exports, "__esModule", { value: true });
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+ exports.default = LinearHicDisplayF;
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  const pluggableElementTypes_1 = require("@jbrowse/core/pluggableElementTypes");
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  const plugin_linear_genome_view_1 = require("@jbrowse/plugin-linear-genome-view");
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  const configSchema_1 = __importDefault(require("./configSchema"));
@@ -21,4 +22,3 @@ function LinearHicDisplayF(pluginManager) {
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  });
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  });
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  }
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- exports.default = LinearHicDisplayF;
package/dist/LinearHicDisplay/model.d.ts CHANGED
@@ -1,7 +1,12 @@
1
- /// <reference types="react" />
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  import { AnyConfigurationSchemaType } from '@jbrowse/core/configuration';
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  export default function stateModelFactory(configSchema: AnyConfigurationSchemaType): import("mobx-state-tree").IModelType<{
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- id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
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+ id: import("mobx-state-tree").IOptionalIType<import(
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+ /**
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+ * #stateModel LinearHicDisplay
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+ * #category display
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+ * extends `BaseLinearDisplay`
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+ */
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+ "mobx-state-tree").ISimpleType<string>, [undefined]>;
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  type: import("mobx-state-tree").ISimpleType<string>;
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  rpcDriverName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
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  } & {
@@ -28,7 +33,7 @@ export default function stateModelFactory(configSchema: AnyConfigurationSchemaTy
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  }, {
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  renderInProgress: AbortController | undefined;
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  filled: boolean;
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- reactElement: import("react").ReactElement<any, string | import("react").JSXElementConstructor<any>> | undefined;
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+ reactElement: import("react").ReactElement | undefined;
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  features: Map<string, import("@jbrowse/core/util").Feature> | undefined;
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  layout: any;
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  status: string;
@@ -37,12 +42,14 @@ export default function stateModelFactory(configSchema: AnyConfigurationSchemaTy
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  maxHeightReached: boolean;
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  ReactComponent: ({ model, }: {
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  model: {
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- error?: unknown;
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+ error? /**
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+ * #method
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+ */: unknown;
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  reload: () => void;
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  message: import("react").ReactNode;
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- filled?: boolean | undefined;
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- status?: string | undefined;
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- reactElement?: import("react").ReactElement<any, string | import("react").JSXElementConstructor<any>> | undefined;
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+ filled?: boolean;
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+ status?: string;
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+ reactElement?: import("react").ReactElement;
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  };
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  }) => import("react").JSX.Element | undefined;
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  renderProps: any;
@@ -53,7 +60,7 @@ export default function stateModelFactory(configSchema: AnyConfigurationSchemaTy
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  setLoading(abortController: AbortController): void;
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  setMessage(messageText: string): void;
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  setRendered(props: {
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- reactElement: import("react").ReactElement<any, string | import("react").JSXElementConstructor<any>>;
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+ reactElement: import("react").ReactElement;
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  features: Map<string, import("@jbrowse/core/util").Feature>;
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  layout: any;
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  maxHeightReached: boolean;
@@ -62,9 +69,7 @@ export default function stateModelFactory(configSchema: AnyConfigurationSchemaTy
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  setError(error: unknown): void;
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  reload(): void;
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  beforeDestroy(): void;
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- }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>; /**
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- * #action
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- */
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+ }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
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  configuration: import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
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  maxFeatureScreenDensity: {
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  type: string;
@@ -75,9 +80,7 @@ export default function stateModelFactory(configSchema: AnyConfigurationSchemaTy
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  type: string;
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  defaultValue: number;
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  description: string;
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- }; /**
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- * #property
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- */
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+ };
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  height: {
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  type: string;
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  defaultValue: number;
@@ -94,9 +97,7 @@ export default function stateModelFactory(configSchema: AnyConfigurationSchemaTy
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  description: string;
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  defaultValue: never[];
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  };
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- }, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, "displayId">>; /**
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- * #action
99
- */
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+ }, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, "displayId">>;
100
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  } & {
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  type: import("mobx-state-tree").ISimpleType<"LinearHicDisplay">;
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  configuration: AnyConfigurationSchemaType;
@@ -106,25 +107,21 @@ export default function stateModelFactory(configSchema: AnyConfigurationSchemaTy
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  }, {
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  rendererTypeName: string;
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  error: unknown;
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- message: string | undefined; /**
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- * #property
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- */
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+ message: string | undefined;
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  } & {
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  readonly RenderingComponent: import("react").FC<{
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  model: {
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  id: string;
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  type: string;
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- rpcDriverName: string | undefined; /**
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- * #property
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- */
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+ rpcDriverName: string | undefined;
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  } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
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  rendererTypeName: string;
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  error: unknown;
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- message: string | undefined; /**
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- * #property
125
- */
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+ message: string | undefined;
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  } & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
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- id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
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+ id: import("mobx-state-tree" /**
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+ * #getter
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+ */).IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
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  type: import("mobx-state-tree").ISimpleType<string>;
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  rpcDriverName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
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  }, {
@@ -132,8 +129,8 @@ export default function stateModelFactory(configSchema: AnyConfigurationSchemaTy
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  error: unknown;
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  message: string | undefined;
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  }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
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- onHorizontalScroll?: Function | undefined;
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- blockState?: Record<string, any> | undefined;
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+ onHorizontalScroll?: Function;
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+ blockState?: Record<string, any>;
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  }>;
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  readonly DisplayBlurb: import("react").FC<{
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  model: {
@@ -158,12 +155,12 @@ export default function stateModelFactory(configSchema: AnyConfigurationSchemaTy
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  readonly parentTrack: any;
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  renderProps(): any;
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  readonly rendererType: import("@jbrowse/core/pluggableElementTypes").RendererType;
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- readonly DisplayMessageComponent: import("react").FC<any> | undefined;
158
+ readonly DisplayMessageComponent: undefined | import("react").FC<any>;
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  trackMenuItems(): import("@jbrowse/core/ui").MenuItem[];
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  readonly viewMenuActions: import("@jbrowse/core/ui").MenuItem[];
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  regionCannotBeRendered(): null;
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  } & {
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- setMessage(arg?: string | undefined): void;
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+ setMessage(arg?: string): void;
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  setError(error?: unknown): void;
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  setRpcDriverName(rpcDriverName: string): void;
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  reload(): void;
@@ -176,13 +173,11 @@ export default function stateModelFactory(configSchema: AnyConfigurationSchemaTy
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  setHeight(displayHeight: number): number;
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  resizeHeight(distance: number): number;
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  } & {
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- featureDensityStatsP: Promise<import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats> | undefined;
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- featureDensityStats: import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats | undefined;
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+ featureDensityStatsP: undefined | Promise<import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats>;
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+ featureDensityStats: undefined | import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats;
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  currStatsBpPerPx: number;
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  } & {
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- readonly currentBytesRequested: number; /**
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- * #method
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- */
180
+ readonly currentBytesRequested: number;
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  readonly currentFeatureScreenDensity: number;
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  readonly maxFeatureScreenDensity: any;
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  readonly featureDensityStatsReady: boolean;
@@ -191,10 +186,10 @@ export default function stateModelFactory(configSchema: AnyConfigurationSchemaTy
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  afterAttach(): void;
192
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  } & {
193
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  setCurrStatsBpPerPx(n: number): void;
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- setFeatureDensityStatsLimit(stats?: import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats | undefined): void;
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+ setFeatureDensityStatsLimit(stats?: import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats): void;
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  getFeatureDensityStats(): Promise<import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats>;
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  setFeatureDensityStatsP(arg: any): void;
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- setFeatureDensityStats(featureDensityStats?: import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats | undefined): void;
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+ setFeatureDensityStats(featureDensityStats?: import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats): void;
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  clearFeatureDensityStats(): void;
199
194
  } & {
200
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  readonly regionTooLarge: boolean;
@@ -203,18 +198,16 @@ export default function stateModelFactory(configSchema: AnyConfigurationSchemaTy
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  regionCannotBeRenderedText(_region: import("@jbrowse/core/util").Region): "" | "Force load to see features";
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  regionCannotBeRendered(_region: import("@jbrowse/core/util").Region): import("react").JSX.Element | null;
205
200
  } & {
206
- featureIdUnderMouse: string | undefined;
207
- contextMenuFeature: import("@jbrowse/core/util").Feature | undefined;
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+ featureIdUnderMouse: undefined | string;
202
+ contextMenuFeature: undefined | import("@jbrowse/core/util").Feature;
208
203
  } & {
209
- readonly blockType: "dynamicBlocks" | "staticBlocks"; /**
210
- * #getter
211
- */
204
+ readonly blockType: "dynamicBlocks" | "staticBlocks";
212
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  readonly blockDefinitions: import("@jbrowse/core/util/blockTypes").BlockSet;
213
206
  } & {
214
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  readonly renderDelay: number;
215
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  readonly TooltipComponent: import("react").FC<any>;
216
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  readonly selectedFeatureId: string | undefined;
217
- readonly DisplayMessageComponent: import("react").FC<any> | undefined;
210
+ readonly DisplayMessageComponent: undefined | import("react").FC<any>;
218
211
  } & {
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  readonly features: import("@jbrowse/core/util/compositeMap").default<string, import("@jbrowse/core/util").Feature>;
220
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  readonly featureUnderMouse: import("@jbrowse/core/util").Feature | undefined;
@@ -227,8 +220,8 @@ export default function stateModelFactory(configSchema: AnyConfigurationSchemaTy
227
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  selectFeature(feature: import("@jbrowse/core/util").Feature): void;
228
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  navToFeature(feature: import("@jbrowse/core/util").Feature): void;
229
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  clearFeatureSelection(): void;
230
- setFeatureIdUnderMouse(feature?: string | undefined): void;
231
- setContextMenuFeature(feature?: import("@jbrowse/core/util").Feature | undefined): void;
223
+ setFeatureIdUnderMouse(feature?: string): void;
224
+ setContextMenuFeature(feature?: import("@jbrowse/core/util").Feature): void;
232
225
  } & {
233
226
  reload(): Promise<void>;
234
227
  } & {
@@ -314,7 +307,7 @@ export default function stateModelFactory(configSchema: AnyConfigurationSchemaTy
314
307
  }, {
315
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  renderInProgress: AbortController | undefined;
316
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  filled: boolean;
317
- reactElement: import("react").ReactElement<any, string | import("react").JSXElementConstructor<any>> | undefined;
310
+ reactElement: import("react").ReactElement | undefined;
318
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  features: Map<string, import("@jbrowse/core/util").Feature> | undefined;
319
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  layout: any;
320
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  status: string;
@@ -323,12 +316,14 @@ export default function stateModelFactory(configSchema: AnyConfigurationSchemaTy
323
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  maxHeightReached: boolean;
324
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  ReactComponent: ({ model, }: {
325
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  model: {
326
- error?: unknown;
319
+ error? /**
320
+ * #method
321
+ */: unknown;
327
322
  reload: () => void;
328
323
  message: import("react").ReactNode;
329
- filled?: boolean | undefined;
330
- status?: string | undefined;
331
- reactElement?: import("react").ReactElement<any, string | import("react").JSXElementConstructor<any>> | undefined;
324
+ filled?: boolean;
325
+ status?: string;
326
+ reactElement?: import("react").ReactElement;
332
327
  };
333
328
  }) => import("react").JSX.Element | undefined;
334
329
  renderProps: any;
@@ -339,7 +334,7 @@ export default function stateModelFactory(configSchema: AnyConfigurationSchemaTy
339
334
  setLoading(abortController: AbortController): void;
340
335
  setMessage(messageText: string): void;
341
336
  setRendered(props: {
342
- reactElement: import("react").ReactElement<any, string | import("react").JSXElementConstructor<any>>;
337
+ reactElement: import("react").ReactElement;
343
338
  features: Map<string, import("@jbrowse/core/util").Feature>;
344
339
  layout: any;
345
340
  maxHeightReached: boolean;
@@ -348,9 +343,7 @@ export default function stateModelFactory(configSchema: AnyConfigurationSchemaTy
348
343
  setError(error: unknown): void;
349
344
  reload(): void;
350
345
  beforeDestroy(): void;
351
- }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>; /**
352
- * #action
353
- */
346
+ }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
354
347
  configuration: import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
355
348
  maxFeatureScreenDensity: {
356
349
  type: string;
@@ -361,9 +354,7 @@ export default function stateModelFactory(configSchema: AnyConfigurationSchemaTy
361
354
  type: string;
362
355
  defaultValue: number;
363
356
  description: string;
364
- }; /**
365
- * #property
366
- */
357
+ };
367
358
  height: {
368
359
  type: string;
369
360
  defaultValue: number;
@@ -380,9 +371,7 @@ export default function stateModelFactory(configSchema: AnyConfigurationSchemaTy
380
371
  description: string;
381
372
  defaultValue: never[];
382
373
  };
383
- }, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, "displayId">>; /**
384
- * #action
385
- */
374
+ }, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, "displayId">>;
386
375
  }>> & import("mobx-state-tree/dist/internal").NonEmptyObject & import("mobx-state-tree")._NotCustomized, {
387
376
  type: string;
388
377
  id: string;
package/dist/LinearHicDisplay/model.js CHANGED
@@ -1,5 +1,6 @@
1
1
  "use strict";
2
2
  Object.defineProperty(exports, "__esModule", { value: true });
3
+ exports.default = stateModelFactory;
3
4
  const configuration_1 = require("@jbrowse/core/configuration");
4
5
  const plugin_linear_genome_view_1 = require("@jbrowse/plugin-linear-genome-view");
5
6
  const mobx_state_tree_1 = require("mobx-state-tree");
@@ -146,4 +147,3 @@ function stateModelFactory(configSchema) {
146
147
  };
147
148
  });
148
149
  }
149
- exports.default = stateModelFactory;
package/esm/HicRenderer/HicRenderer.d.ts CHANGED
@@ -1,4 +1,3 @@
1
- /// <reference types="react" />
2
1
  import ServerSideRendererType, { RenderArgs as ServerSideRenderArgs, RenderArgsDeserialized as ServerSideRenderArgsDeserialized, ResultsSerialized as ServerSideResultsSerialized, ResultsDeserialized as ServerSideResultsDeserialized } from '@jbrowse/core/pluggableElementTypes/renderers/ServerSideRendererType';
3
2
  import { Region } from '@jbrowse/core/util/types';
4
3
  import { BaseFeatureDataAdapter } from '@jbrowse/core/data_adapters/BaseAdapter';
@@ -34,19 +33,19 @@ export default class HicRenderer extends ServerSideRendererType {
34
33
  height: any;
35
34
  width: number;
36
35
  canvasRecordedData: any;
37
- reactElement?: import("react").ReactElement<any, string | import("react").JSXElementConstructor<any>> | undefined;
38
- html?: string | undefined;
36
+ reactElement?: import("react").ReactElement;
37
+ html?: string;
39
38
  } | {
40
39
  height: any;
41
40
  width: number;
42
41
  reactElement: import("react").JSX.Element;
43
- html?: string | undefined;
42
+ html?: string;
44
43
  } | {
45
44
  height: any;
46
45
  width: number;
47
46
  imageData: any;
48
- reactElement?: import("react").ReactElement<any, string | import("react").JSXElementConstructor<any>> | undefined;
49
- html?: string | undefined;
47
+ reactElement?: import("react").ReactElement;
48
+ html?: string;
50
49
  }>;
51
50
  getFeatures(args: RenderArgsDeserialized): Promise<any>;
52
51
  }
package/esm/LinearHicDisplay/model.d.ts CHANGED
@@ -1,7 +1,12 @@
1
- /// <reference types="react" />
2
1
  import { AnyConfigurationSchemaType } from '@jbrowse/core/configuration';
3
2
  export default function stateModelFactory(configSchema: AnyConfigurationSchemaType): import("mobx-state-tree").IModelType<{
4
- id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
3
+ id: import("mobx-state-tree").IOptionalIType<import(
4
+ /**
5
+ * #stateModel LinearHicDisplay
6
+ * #category display
7
+ * extends `BaseLinearDisplay`
8
+ */
9
+ "mobx-state-tree").ISimpleType<string>, [undefined]>;
5
10
  type: import("mobx-state-tree").ISimpleType<string>;
6
11
  rpcDriverName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
7
12
  } & {
@@ -28,7 +33,7 @@ export default function stateModelFactory(configSchema: AnyConfigurationSchemaTy
28
33
  }, {
29
34
  renderInProgress: AbortController | undefined;
30
35
  filled: boolean;
31
- reactElement: import("react").ReactElement<any, string | import("react").JSXElementConstructor<any>> | undefined;
36
+ reactElement: import("react").ReactElement | undefined;
32
37
  features: Map<string, import("@jbrowse/core/util").Feature> | undefined;
33
38
  layout: any;
34
39
  status: string;
@@ -37,12 +42,14 @@ export default function stateModelFactory(configSchema: AnyConfigurationSchemaTy
37
42
  maxHeightReached: boolean;
38
43
  ReactComponent: ({ model, }: {
39
44
  model: {
40
- error?: unknown;
45
+ error? /**
46
+ * #method
47
+ */: unknown;
41
48
  reload: () => void;
42
49
  message: import("react").ReactNode;
43
- filled?: boolean | undefined;
44
- status?: string | undefined;
45
- reactElement?: import("react").ReactElement<any, string | import("react").JSXElementConstructor<any>> | undefined;
50
+ filled?: boolean;
51
+ status?: string;
52
+ reactElement?: import("react").ReactElement;
46
53
  };
47
54
  }) => import("react").JSX.Element | undefined;
48
55
  renderProps: any;
@@ -53,7 +60,7 @@ export default function stateModelFactory(configSchema: AnyConfigurationSchemaTy
53
60
  setLoading(abortController: AbortController): void;
54
61
  setMessage(messageText: string): void;
55
62
  setRendered(props: {
56
- reactElement: import("react").ReactElement<any, string | import("react").JSXElementConstructor<any>>;
63
+ reactElement: import("react").ReactElement;
57
64
  features: Map<string, import("@jbrowse/core/util").Feature>;
58
65
  layout: any;
59
66
  maxHeightReached: boolean;
@@ -62,9 +69,7 @@ export default function stateModelFactory(configSchema: AnyConfigurationSchemaTy
62
69
  setError(error: unknown): void;
63
70
  reload(): void;
64
71
  beforeDestroy(): void;
65
- }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>; /**
66
- * #action
67
- */
72
+ }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
68
73
  configuration: import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
69
74
  maxFeatureScreenDensity: {
70
75
  type: string;
@@ -75,9 +80,7 @@ export default function stateModelFactory(configSchema: AnyConfigurationSchemaTy
75
80
  type: string;
76
81
  defaultValue: number;
77
82
  description: string;
78
- }; /**
79
- * #property
80
- */
83
+ };
81
84
  height: {
82
85
  type: string;
83
86
  defaultValue: number;
@@ -94,9 +97,7 @@ export default function stateModelFactory(configSchema: AnyConfigurationSchemaTy
94
97
  description: string;
95
98
  defaultValue: never[];
96
99
  };
97
- }, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, "displayId">>; /**
98
- * #action
99
- */
100
+ }, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, "displayId">>;
100
101
  } & {
101
102
  type: import("mobx-state-tree").ISimpleType<"LinearHicDisplay">;
102
103
  configuration: AnyConfigurationSchemaType;
@@ -106,25 +107,21 @@ export default function stateModelFactory(configSchema: AnyConfigurationSchemaTy
106
107
  }, {
107
108
  rendererTypeName: string;
108
109
  error: unknown;
109
- message: string | undefined; /**
110
- * #property
111
- */
110
+ message: string | undefined;
112
111
  } & {
113
112
  readonly RenderingComponent: import("react").FC<{
114
113
  model: {
115
114
  id: string;
116
115
  type: string;
117
- rpcDriverName: string | undefined; /**
118
- * #property
119
- */
116
+ rpcDriverName: string | undefined;
120
117
  } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
121
118
  rendererTypeName: string;
122
119
  error: unknown;
123
- message: string | undefined; /**
124
- * #property
125
- */
120
+ message: string | undefined;
126
121
  } & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
127
- id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
122
+ id: import("mobx-state-tree" /**
123
+ * #getter
124
+ */).IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
128
125
  type: import("mobx-state-tree").ISimpleType<string>;
129
126
  rpcDriverName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
130
127
  }, {
@@ -132,8 +129,8 @@ export default function stateModelFactory(configSchema: AnyConfigurationSchemaTy
132
129
  error: unknown;
133
130
  message: string | undefined;
134
131
  }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
135
- onHorizontalScroll?: Function | undefined;
136
- blockState?: Record<string, any> | undefined;
132
+ onHorizontalScroll?: Function;
133
+ blockState?: Record<string, any>;
137
134
  }>;
138
135
  readonly DisplayBlurb: import("react").FC<{
139
136
  model: {
@@ -158,12 +155,12 @@ export default function stateModelFactory(configSchema: AnyConfigurationSchemaTy
158
155
  readonly parentTrack: any;
159
156
  renderProps(): any;
160
157
  readonly rendererType: import("@jbrowse/core/pluggableElementTypes").RendererType;
161
- readonly DisplayMessageComponent: import("react").FC<any> | undefined;
158
+ readonly DisplayMessageComponent: undefined | import("react").FC<any>;
162
159
  trackMenuItems(): import("@jbrowse/core/ui").MenuItem[];
163
160
  readonly viewMenuActions: import("@jbrowse/core/ui").MenuItem[];
164
161
  regionCannotBeRendered(): null;
165
162
  } & {
166
- setMessage(arg?: string | undefined): void;
163
+ setMessage(arg?: string): void;
167
164
  setError(error?: unknown): void;
168
165
  setRpcDriverName(rpcDriverName: string): void;
169
166
  reload(): void;
@@ -176,13 +173,11 @@ export default function stateModelFactory(configSchema: AnyConfigurationSchemaTy
176
173
  setHeight(displayHeight: number): number;
177
174
  resizeHeight(distance: number): number;
178
175
  } & {
179
- featureDensityStatsP: Promise<import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats> | undefined;
180
- featureDensityStats: import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats | undefined;
176
+ featureDensityStatsP: undefined | Promise<import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats>;
177
+ featureDensityStats: undefined | import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats;
181
178
  currStatsBpPerPx: number;
182
179
  } & {
183
- readonly currentBytesRequested: number; /**
184
- * #method
185
- */
180
+ readonly currentBytesRequested: number;
186
181
  readonly currentFeatureScreenDensity: number;
187
182
  readonly maxFeatureScreenDensity: any;
188
183
  readonly featureDensityStatsReady: boolean;
@@ -191,10 +186,10 @@ export default function stateModelFactory(configSchema: AnyConfigurationSchemaTy
191
186
  afterAttach(): void;
192
187
  } & {
193
188
  setCurrStatsBpPerPx(n: number): void;
194
- setFeatureDensityStatsLimit(stats?: import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats | undefined): void;
189
+ setFeatureDensityStatsLimit(stats?: import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats): void;
195
190
  getFeatureDensityStats(): Promise<import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats>;
196
191
  setFeatureDensityStatsP(arg: any): void;
197
- setFeatureDensityStats(featureDensityStats?: import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats | undefined): void;
192
+ setFeatureDensityStats(featureDensityStats?: import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats): void;
198
193
  clearFeatureDensityStats(): void;
199
194
  } & {
200
195
  readonly regionTooLarge: boolean;
@@ -203,18 +198,16 @@ export default function stateModelFactory(configSchema: AnyConfigurationSchemaTy
203
198
  regionCannotBeRenderedText(_region: import("@jbrowse/core/util").Region): "" | "Force load to see features";
204
199
  regionCannotBeRendered(_region: import("@jbrowse/core/util").Region): import("react").JSX.Element | null;
205
200
  } & {
206
- featureIdUnderMouse: string | undefined;
207
- contextMenuFeature: import("@jbrowse/core/util").Feature | undefined;
201
+ featureIdUnderMouse: undefined | string;
202
+ contextMenuFeature: undefined | import("@jbrowse/core/util").Feature;
208
203
  } & {
209
- readonly blockType: "dynamicBlocks" | "staticBlocks"; /**
210
- * #getter
211
- */
204
+ readonly blockType: "dynamicBlocks" | "staticBlocks";
212
205
  readonly blockDefinitions: import("@jbrowse/core/util/blockTypes").BlockSet;
213
206
  } & {
214
207
  readonly renderDelay: number;
215
208
  readonly TooltipComponent: import("react").FC<any>;
216
209
  readonly selectedFeatureId: string | undefined;
217
- readonly DisplayMessageComponent: import("react").FC<any> | undefined;
210
+ readonly DisplayMessageComponent: undefined | import("react").FC<any>;
218
211
  } & {
219
212
  readonly features: import("@jbrowse/core/util/compositeMap").default<string, import("@jbrowse/core/util").Feature>;
220
213
  readonly featureUnderMouse: import("@jbrowse/core/util").Feature | undefined;
@@ -227,8 +220,8 @@ export default function stateModelFactory(configSchema: AnyConfigurationSchemaTy
227
220
  selectFeature(feature: import("@jbrowse/core/util").Feature): void;
228
221
  navToFeature(feature: import("@jbrowse/core/util").Feature): void;
229
222
  clearFeatureSelection(): void;
230
- setFeatureIdUnderMouse(feature?: string | undefined): void;
231
- setContextMenuFeature(feature?: import("@jbrowse/core/util").Feature | undefined): void;
223
+ setFeatureIdUnderMouse(feature?: string): void;
224
+ setContextMenuFeature(feature?: import("@jbrowse/core/util").Feature): void;
232
225
  } & {
233
226
  reload(): Promise<void>;
234
227
  } & {
@@ -314,7 +307,7 @@ export default function stateModelFactory(configSchema: AnyConfigurationSchemaTy
314
307
  }, {
315
308
  renderInProgress: AbortController | undefined;
316
309
  filled: boolean;
317
- reactElement: import("react").ReactElement<any, string | import("react").JSXElementConstructor<any>> | undefined;
310
+ reactElement: import("react").ReactElement | undefined;
318
311
  features: Map<string, import("@jbrowse/core/util").Feature> | undefined;
319
312
  layout: any;
320
313
  status: string;
@@ -323,12 +316,14 @@ export default function stateModelFactory(configSchema: AnyConfigurationSchemaTy
323
316
  maxHeightReached: boolean;
324
317
  ReactComponent: ({ model, }: {
325
318
  model: {
326
- error?: unknown;
319
+ error? /**
320
+ * #method
321
+ */: unknown;
327
322
  reload: () => void;
328
323
  message: import("react").ReactNode;
329
- filled?: boolean | undefined;
330
- status?: string | undefined;
331
- reactElement?: import("react").ReactElement<any, string | import("react").JSXElementConstructor<any>> | undefined;
324
+ filled?: boolean;
325
+ status?: string;
326
+ reactElement?: import("react").ReactElement;
332
327
  };
333
328
  }) => import("react").JSX.Element | undefined;
334
329
  renderProps: any;
@@ -339,7 +334,7 @@ export default function stateModelFactory(configSchema: AnyConfigurationSchemaTy
339
334
  setLoading(abortController: AbortController): void;
340
335
  setMessage(messageText: string): void;
341
336
  setRendered(props: {
342
- reactElement: import("react").ReactElement<any, string | import("react").JSXElementConstructor<any>>;
337
+ reactElement: import("react").ReactElement;
343
338
  features: Map<string, import("@jbrowse/core/util").Feature>;
344
339
  layout: any;
345
340
  maxHeightReached: boolean;
@@ -348,9 +343,7 @@ export default function stateModelFactory(configSchema: AnyConfigurationSchemaTy
348
343
  setError(error: unknown): void;
349
344
  reload(): void;
350
345
  beforeDestroy(): void;
351
- }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>; /**
352
- * #action
353
- */
346
+ }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
354
347
  configuration: import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
355
348
  maxFeatureScreenDensity: {
356
349
  type: string;
@@ -361,9 +354,7 @@ export default function stateModelFactory(configSchema: AnyConfigurationSchemaTy
361
354
  type: string;
362
355
  defaultValue: number;
363
356
  description: string;
364
- }; /**
365
- * #property
366
- */
357
+ };
367
358
  height: {
368
359
  type: string;
369
360
  defaultValue: number;
@@ -380,9 +371,7 @@ export default function stateModelFactory(configSchema: AnyConfigurationSchemaTy
380
371
  description: string;
381
372
  defaultValue: never[];
382
373
  };
383
- }, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, "displayId">>; /**
384
- * #action
385
- */
374
+ }, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, "displayId">>;
386
375
  }>> & import("mobx-state-tree/dist/internal").NonEmptyObject & import("mobx-state-tree")._NotCustomized, {
387
376
  type: string;
388
377
  id: string;
package/package.json CHANGED
@@ -1,6 +1,6 @@
1
1
  {
2
2
  "name": "@jbrowse/plugin-hic",
3
- "version": "2.12.0",
3
+ "version": "2.12.2",
4
4
  "description": "JBrowse 2 hic adapters, tracks, etc.",
5
5
  "keywords": [
6
6
  "jbrowse",
@@ -56,5 +56,5 @@
56
56
  "publishConfig": {
57
57
  "access": "public"
58
58
  },
59
- "gitHead": "935f2602d29abc737bb1f493a922b6218d023ae2"
59
+ "gitHead": "1ec66736ce048a1637f52b7a7ef2eb02d956b771"
60
60
  }