@jbrowse/plugin-gtf 3.2.0 → 3.4.0

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Files changed (9) hide show
  1. package/dist/GtfAdapter/GtfAdapter.d.ts +0 -1
  2. package/dist/GtfAdapter/GtfAdapter.js +0 -1
  3. package/dist/GtfAdapter/configSchema.d.ts +2 -0
  4. package/dist/GtfAdapter/configSchema.js +2 -0
  5. package/esm/GtfAdapter/GtfAdapter.d.ts +0 -1
  6. package/esm/GtfAdapter/GtfAdapter.js +0 -1
  7. package/esm/GtfAdapter/configSchema.d.ts +2 -0
  8. package/esm/GtfAdapter/configSchema.js +2 -0
  9. package/package.json +6 -6
package/dist/GtfAdapter/GtfAdapter.d.ts CHANGED
@@ -23,6 +23,5 @@ export default class GtfAdapter extends BaseFeatureDataAdapter {
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  allowRedispatch: boolean;
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  originalQuery?: Region;
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  }): Promise<void>;
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- freeResources(): void;
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  }
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  export {};
package/dist/GtfAdapter/GtfAdapter.js CHANGED
@@ -184,6 +184,5 @@ class GtfAdapter extends BaseAdapter_1.BaseFeatureDataAdapter {
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  }
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  observer.complete();
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  }
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- freeResources() { }
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  }
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  exports.default = GtfAdapter;
package/dist/GtfAdapter/configSchema.d.ts CHANGED
@@ -1,6 +1,7 @@
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  declare const GtfAdapter: import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
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  gtfLocation: {
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  type: string;
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+ description: string;
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  defaultValue: {
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  uri: string;
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  locationType: string;
@@ -8,6 +9,7 @@ declare const GtfAdapter: import("@jbrowse/core/configuration/configurationSchem
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  };
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  aggregateField: {
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  type: string;
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+ description: string;
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  defaultValue: string;
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  };
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  }, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, undefined>>;
package/dist/GtfAdapter/configSchema.js CHANGED
@@ -5,6 +5,7 @@ function x() { }
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  const GtfAdapter = (0, configuration_1.ConfigurationSchema)('GtfAdapter', {
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  gtfLocation: {
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  type: 'fileLocation',
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+ description: 'path to gtf file, also allows for gzipped gtf',
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  defaultValue: {
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  uri: '/path/to/my.gtf',
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  locationType: 'UriLocation',
@@ -12,6 +13,7 @@ const GtfAdapter = (0, configuration_1.ConfigurationSchema)('GtfAdapter', {
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  },
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  aggregateField: {
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  type: 'string',
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+ description: 'field used to aggregate multiple transcripts into a single parent gene feature',
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  defaultValue: 'gene_name',
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  },
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  }, {
package/esm/GtfAdapter/GtfAdapter.d.ts CHANGED
@@ -23,6 +23,5 @@ export default class GtfAdapter extends BaseFeatureDataAdapter {
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  allowRedispatch: boolean;
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  originalQuery?: Region;
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  }): Promise<void>;
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- freeResources(): void;
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  }
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  export {};
package/esm/GtfAdapter/GtfAdapter.js CHANGED
@@ -179,5 +179,4 @@ export default class GtfAdapter extends BaseFeatureDataAdapter {
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  }
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  observer.complete();
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  }
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- freeResources() { }
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  }
package/esm/GtfAdapter/configSchema.d.ts CHANGED
@@ -1,6 +1,7 @@
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  declare const GtfAdapter: import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
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  gtfLocation: {
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  type: string;
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+ description: string;
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  defaultValue: {
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  uri: string;
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  locationType: string;
@@ -8,6 +9,7 @@ declare const GtfAdapter: import("@jbrowse/core/configuration/configurationSchem
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  };
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  aggregateField: {
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  type: string;
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+ description: string;
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  defaultValue: string;
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  };
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  }, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, undefined>>;
package/esm/GtfAdapter/configSchema.js CHANGED
@@ -3,6 +3,7 @@ function x() { }
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  const GtfAdapter = ConfigurationSchema('GtfAdapter', {
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  gtfLocation: {
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  type: 'fileLocation',
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+ description: 'path to gtf file, also allows for gzipped gtf',
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  defaultValue: {
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  uri: '/path/to/my.gtf',
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  locationType: 'UriLocation',
@@ -10,6 +11,7 @@ const GtfAdapter = ConfigurationSchema('GtfAdapter', {
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  },
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  aggregateField: {
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  type: 'string',
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+ description: 'field used to aggregate multiple transcripts into a single parent gene feature',
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  defaultValue: 'gene_name',
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  },
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  }, {
package/package.json CHANGED
@@ -1,6 +1,6 @@
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  {
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  "name": "@jbrowse/plugin-gtf",
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- "version": "3.2.0",
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+ "version": "3.4.0",
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  "description": "JBrowse 2 gtf feature adapter",
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  "keywords": [
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  "jbrowse",
@@ -37,10 +37,10 @@
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  },
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  "dependencies": {
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  "@flatten-js/interval-tree": "^1.0.15",
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- "@gmod/bgzf-filehandle": "^2.0.1",
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- "@jbrowse/core": "^3.2.0",
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- "@jbrowse/plugin-linear-genome-view": "^3.2.0",
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- "@mui/material": "^6.0.0",
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+ "@gmod/bgzf-filehandle": "^3.0.2",
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+ "@jbrowse/core": "^3.4.0",
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+ "@jbrowse/plugin-linear-genome-view": "^3.4.0",
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+ "@mui/material": "^7.0.0",
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  "gtf-nostream": "^1.0.0",
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  "mobx": "^6.0.0",
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  "mobx-react": "^9.0.0",
@@ -56,5 +56,5 @@
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  "distModule": "esm/index.js",
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  "srcModule": "src/index.ts",
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  "module": "esm/index.js",
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- "gitHead": "c750e3f56706a490c19ba75abd807fec5e38aebf"
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+ "gitHead": "a9f1ac35fc2dd810bae92cdaf1fc19995bee4413"
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  }