@jbrowse/plugin-gtf 2.6.2 → 2.7.0

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Files changed (7) hide show
  1. package/dist/GtfAdapter/GtfAdapter.d.ts +2 -6
  2. package/dist/GtfAdapter/GtfAdapter.js +3 -5
  3. package/dist/util.d.ts +1 -3
  4. package/esm/GtfAdapter/GtfAdapter.d.ts +2 -6
  5. package/esm/GtfAdapter/GtfAdapter.js +3 -5
  6. package/esm/util.d.ts +1 -3
  7. package/package.json +3 -3
package/dist/GtfAdapter/GtfAdapter.d.ts CHANGED
@@ -4,13 +4,9 @@ import IntervalTree from '@flatten-js/interval-tree';
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  import { Feature } from '@jbrowse/core/util';
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  export default class extends BaseFeatureDataAdapter {
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  protected gtfFeatures?: Promise<{
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- feats: {
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- [key: string]: string[];
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- };
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+ feats: Record<string, string[]>;
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  }>;
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- protected intervalTrees: {
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- [key: string]: Promise<IntervalTree | undefined> | undefined;
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- };
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+ protected intervalTrees: Record<string, Promise<IntervalTree | undefined> | undefined>;
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  private loadDataP;
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  private loadData;
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  getRefNames(opts?: BaseOptions): Promise<string[]>;
package/dist/GtfAdapter/GtfAdapter.js CHANGED
@@ -33,8 +33,7 @@ class default_1 extends BaseAdapter_1.BaseFeatureDataAdapter {
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  .split(/\n|\r\n|\r/)
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  .filter(f => !!f && !f.startsWith('#'));
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  const feats = {};
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- for (let i = 0; i < lines.length; i++) {
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- const line = lines[i];
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+ for (const line of lines) {
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  if (line.startsWith('#')) {
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  continue;
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  }
@@ -43,7 +42,7 @@ class default_1 extends BaseAdapter_1.BaseFeatureDataAdapter {
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  if (!feats[refName]) {
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  feats[refName] = [];
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  }
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- feats[refName].push(lines[i]);
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+ feats[refName].push(line);
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  }
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  return { feats };
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  }
@@ -77,8 +76,7 @@ class default_1 extends BaseAdapter_1.BaseFeatureDataAdapter {
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  data: (0, util_2.featureData)(f),
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  id: `${this.id}-${refName}-${i}`,
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  }));
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- for (let i = 0; i < ret.length; i++) {
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- const obj = ret[i];
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+ for (const obj of ret) {
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  intervalTree.insert([obj.get('start'), obj.get('end')], obj);
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  }
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  return intervalTree;
package/dist/util.d.ts CHANGED
@@ -8,8 +8,6 @@ export interface FeatureLoc {
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  child_features: FeatureLoc[][];
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  data: unknown;
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  derived_features: unknown;
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- attributes: {
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- [key: string]: unknown[];
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- };
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+ attributes: Record<string, unknown[]>;
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  }
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  export declare function featureData(data: FeatureLoc): Record<string, unknown>;
package/esm/GtfAdapter/GtfAdapter.d.ts CHANGED
@@ -4,13 +4,9 @@ import IntervalTree from '@flatten-js/interval-tree';
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  import { Feature } from '@jbrowse/core/util';
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  export default class extends BaseFeatureDataAdapter {
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  protected gtfFeatures?: Promise<{
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- feats: {
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- [key: string]: string[];
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- };
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+ feats: Record<string, string[]>;
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  }>;
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- protected intervalTrees: {
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- [key: string]: Promise<IntervalTree | undefined> | undefined;
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- };
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+ protected intervalTrees: Record<string, Promise<IntervalTree | undefined> | undefined>;
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  private loadDataP;
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  private loadData;
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  getRefNames(opts?: BaseOptions): Promise<string[]>;
package/esm/GtfAdapter/GtfAdapter.js CHANGED
@@ -28,8 +28,7 @@ export default class extends BaseFeatureDataAdapter {
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  .split(/\n|\r\n|\r/)
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  .filter(f => !!f && !f.startsWith('#'));
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  const feats = {};
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- for (let i = 0; i < lines.length; i++) {
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- const line = lines[i];
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+ for (const line of lines) {
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  if (line.startsWith('#')) {
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  continue;
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  }
@@ -38,7 +37,7 @@ export default class extends BaseFeatureDataAdapter {
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  if (!feats[refName]) {
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  feats[refName] = [];
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  }
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- feats[refName].push(lines[i]);
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+ feats[refName].push(line);
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  }
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  return { feats };
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  }
@@ -72,8 +71,7 @@ export default class extends BaseFeatureDataAdapter {
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  data: featureData(f),
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  id: `${this.id}-${refName}-${i}`,
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  }));
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- for (let i = 0; i < ret.length; i++) {
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- const obj = ret[i];
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+ for (const obj of ret) {
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  intervalTree.insert([obj.get('start'), obj.get('end')], obj);
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  }
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  return intervalTree;
package/esm/util.d.ts CHANGED
@@ -8,8 +8,6 @@ export interface FeatureLoc {
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  child_features: FeatureLoc[][];
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  data: unknown;
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  derived_features: unknown;
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- attributes: {
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- [key: string]: unknown[];
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- };
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+ attributes: Record<string, unknown[]>;
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  }
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  export declare function featureData(data: FeatureLoc): Record<string, unknown>;
package/package.json CHANGED
@@ -1,6 +1,6 @@
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  {
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  "name": "@jbrowse/plugin-gtf",
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- "version": "2.6.2",
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+ "version": "2.7.0",
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  "description": "JBrowse 2 gtf feature adapter",
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  "keywords": [
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  "jbrowse",
@@ -45,7 +45,7 @@
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  "@jbrowse/plugin-linear-genome-view": "^2.0.0",
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  "@mui/material": "^5.0.0",
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  "mobx": "^6.0.0",
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- "mobx-react": "^7.0.0",
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+ "mobx-react": "^9.0.0",
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  "mobx-state-tree": "^5.0.0",
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  "react": ">=16.8.0",
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  "rxjs": "^7.0.0"
@@ -56,5 +56,5 @@
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  "distModule": "esm/index.js",
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  "srcModule": "src/index.ts",
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  "module": "esm/index.js",
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- "gitHead": "bbea587a402d9974acdd804a33f4b77f31a2fd5f"
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+ "gitHead": "dbe7fb1af01fc89f833d2744635eb44a17365b41"
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  }