@jbrowse/plugin-gtf 2.5.0 → 2.6.1
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/dist/GtfAdapter/configSchema.js +1 -0
- package/dist/GtfAdapter/configSchema.js.map +1 -1
- package/dist/util.js +1 -1
- package/dist/util.js.map +1 -1
- package/esm/GtfAdapter/configSchema.js +1 -0
- package/esm/GtfAdapter/configSchema.js.map +1 -1
- package/esm/util.js +1 -1
- package/esm/util.js.map +1 -1
- package/package.json +3 -3
- package/src/GtfAdapter/configSchema.ts +1 -0
- package/src/util.ts +1 -1
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@@ -3,6 +3,7 @@ Object.defineProperty(exports, "__esModule", { value: true });
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const configuration_1 = require("@jbrowse/core/configuration");
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/**
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* #config GtfAdapter
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* #category adapter
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*/
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function x() { } // eslint-disable-line @typescript-eslint/no-unused-vars
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const GtfAdapter = (0, configuration_1.ConfigurationSchema)('GtfAdapter', {
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@@ -1 +1 @@
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1
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-
{"version":3,"file":"configSchema.js","sourceRoot":"","sources":["../../src/GtfAdapter/configSchema.ts"],"names":[],"mappings":";;AAAA,+DAAiE;AAEjE
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1
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{"version":3,"file":"configSchema.js","sourceRoot":"","sources":["../../src/GtfAdapter/configSchema.ts"],"names":[],"mappings":";;AAAA,+DAAiE;AAEjE;;;GAGG;AACH,SAAS,CAAC,KAAI,CAAC,CAAC,wDAAwD;AAExE,MAAM,UAAU,GAAG,IAAA,mCAAmB,EACpC,YAAY,EACZ;IACE;;OAEG;IACH,WAAW,EAAE;QACX,IAAI,EAAE,cAAc;QACpB,YAAY,EAAE,EAAE,GAAG,EAAE,iBAAiB,EAAE,YAAY,EAAE,aAAa,EAAE;KACtE;CACF,EACD,EAAE,eAAe,EAAE,IAAI,EAAE,CAC1B,CAAA;AAED,kBAAe,UAAU,CAAA"}
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package/dist/util.js
CHANGED
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@@ -35,7 +35,7 @@ function featureData(data) {
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if (Array.isArray(attr) && attr.length === 1) {
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// gtf uses double quotes for text values in the attributes column,
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// remove them
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-
attr = `${attr[0]}`.
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attr = `${attr[0]}`.replaceAll(/^"|"$/g, '');
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}
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f[b] = attr;
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}
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package/dist/util.js.map
CHANGED
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@@ -1 +1 @@
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1
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-
{"version":3,"file":"util.js","sourceRoot":"","sources":["../src/util.ts"],"names":[],"mappings":";;;AAaA,SAAgB,WAAW,CAAC,IAAgB;IAC1C,MAAM,CAAC,GAA4B,EAAE,GAAG,IAAI,EAAE,CAC7C;IAAC,CAAC,CAAC,KAAgB,IAAI,CAAC,CAAA,CAAC,uBAAuB;IACjD,CAAC,CAAC,MAAM,GAAG,EAAE,GAAG,EAAE,CAAC,EAAE,GAAG,EAAE,CAAC,CAAC,EAAE,GAAG,EAAE,CAAC,EAAE,GAAG,EAAE,SAAS,EAAE,CAAC,IAAI,CAAC,MAAM,CAAC,CAAA,CAAC,iBAAiB;IACrF,CAAC,CAAC,KAAK,GAAG,MAAM,CAAC,IAAI,CAAC,KAAK,CAAC,CAAA;IAC5B,CAAC,CAAC,OAAO,GAAG,IAAI,CAAC,QAAQ,CAAA;IACzB,IAAI,IAAI,CAAC,KAAK,KAAK,IAAI,EAAE;QACvB,OAAO,CAAC,CAAC,KAAK,CAAA;KACf;IACD,IAAI,IAAI,CAAC,KAAK,KAAK,IAAI,EAAE;QACvB,OAAO,CAAC,CAAC,KAAK,CAAA;KACf;IACD,MAAM,aAAa,GAAG,IAAI,GAAG,CAAC;QAC5B,OAAO;QACP,KAAK;QACL,UAAU;QACV,OAAO;QACP,aAAa;QACb,QAAQ;QACR,OAAO;QACP,QAAQ;KACT,CAAC,CAAA;IACF,KAAK,MAAM,CAAC,IAAI,MAAM,CAAC,IAAI,CAAC,IAAI,CAAC,UAAU,CAAC,EAAE;QAC5C,IAAI,CAAC,GAAG,CAAC,CAAC,WAAW,EAAE,CAAA;QACvB,IAAI,aAAa,CAAC,GAAG,CAAC,CAAC,CAAC,EAAE;YACxB,gDAAgD;YAChD,gCAAgC;YAChC,CAAC,IAAI,GAAG,CAAA;SACT;QACD,IAAI,IAAI,CAAC,UAAU,CAAC,CAAC,CAAC,KAAK,IAAI,EAAE;YAC/B,IAAI,IAAI,GAAG,IAAI,CAAC,UAAU,CAAC,CAAC,CAAsB,CAAA;YAClD,IAAI,KAAK,CAAC,OAAO,CAAC,IAAI,CAAC,IAAI,IAAI,CAAC,MAAM,KAAK,CAAC,EAAE;gBAC5C,mEAAmE;gBACnE,cAAc;gBACd,IAAI,GAAG,GAAG,IAAI,CAAC,CAAC,CAAC,EAAE,CAAC,
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{"version":3,"file":"util.js","sourceRoot":"","sources":["../src/util.ts"],"names":[],"mappings":";;;AAaA,SAAgB,WAAW,CAAC,IAAgB;IAC1C,MAAM,CAAC,GAA4B,EAAE,GAAG,IAAI,EAAE,CAC7C;IAAC,CAAC,CAAC,KAAgB,IAAI,CAAC,CAAA,CAAC,uBAAuB;IACjD,CAAC,CAAC,MAAM,GAAG,EAAE,GAAG,EAAE,CAAC,EAAE,GAAG,EAAE,CAAC,CAAC,EAAE,GAAG,EAAE,CAAC,EAAE,GAAG,EAAE,SAAS,EAAE,CAAC,IAAI,CAAC,MAAM,CAAC,CAAA,CAAC,iBAAiB;IACrF,CAAC,CAAC,KAAK,GAAG,MAAM,CAAC,IAAI,CAAC,KAAK,CAAC,CAAA;IAC5B,CAAC,CAAC,OAAO,GAAG,IAAI,CAAC,QAAQ,CAAA;IACzB,IAAI,IAAI,CAAC,KAAK,KAAK,IAAI,EAAE;QACvB,OAAO,CAAC,CAAC,KAAK,CAAA;KACf;IACD,IAAI,IAAI,CAAC,KAAK,KAAK,IAAI,EAAE;QACvB,OAAO,CAAC,CAAC,KAAK,CAAA;KACf;IACD,MAAM,aAAa,GAAG,IAAI,GAAG,CAAC;QAC5B,OAAO;QACP,KAAK;QACL,UAAU;QACV,OAAO;QACP,aAAa;QACb,QAAQ;QACR,OAAO;QACP,QAAQ;KACT,CAAC,CAAA;IACF,KAAK,MAAM,CAAC,IAAI,MAAM,CAAC,IAAI,CAAC,IAAI,CAAC,UAAU,CAAC,EAAE;QAC5C,IAAI,CAAC,GAAG,CAAC,CAAC,WAAW,EAAE,CAAA;QACvB,IAAI,aAAa,CAAC,GAAG,CAAC,CAAC,CAAC,EAAE;YACxB,gDAAgD;YAChD,gCAAgC;YAChC,CAAC,IAAI,GAAG,CAAA;SACT;QACD,IAAI,IAAI,CAAC,UAAU,CAAC,CAAC,CAAC,KAAK,IAAI,EAAE;YAC/B,IAAI,IAAI,GAAG,IAAI,CAAC,UAAU,CAAC,CAAC,CAAsB,CAAA;YAClD,IAAI,KAAK,CAAC,OAAO,CAAC,IAAI,CAAC,IAAI,IAAI,CAAC,MAAM,KAAK,CAAC,EAAE;gBAC5C,mEAAmE;gBACnE,cAAc;gBACd,IAAI,GAAG,GAAG,IAAI,CAAC,CAAC,CAAC,EAAE,CAAC,UAAU,CAAC,QAAQ,EAAE,EAAE,CAAC,CAAA;aAC7C;YACD,CAAC,CAAC,CAAC,CAAC,GAAG,IAAI,CAAA;SACZ;KACF;IACD,CAAC,CAAC,OAAO,GAAG,CAAC,CAAC,QAAQ,CAAA;IACtB,CAAC,CAAC,IAAI,GAAG,CAAC,CAAC,WAAW,CAAA;IAEtB,gFAAgF;IAChF,IAAI,IAAI,CAAC,cAAc,IAAI,IAAI,CAAC,cAAc,CAAC,MAAM,GAAG,CAAC,EAAE;QACzD,CAAC,CAAC,WAAW,GAAG,IAAI,CAAC,cAAc,CAAC,OAAO,CAAC,SAAS,CAAC,EAAE,CACtD,SAAS,CAAC,GAAG,CAAC,QAAQ,CAAC,EAAE,CAAC,WAAW,CAAC,QAAQ,CAAC,CAAC,CACjD,CAAA;KACF;IAED,OAAO,CAAC,CAAC,cAAc,CAAA;IACvB,OAAO,CAAC,CAAC,IAAI,CAAA;IACb,OAAO,CAAC,CAAC,gBAAgB,CAAA;IACzB,gDAAgD;IAChD,OAAO,CAAC,CAAC,SAAS,CAAA;IAClB,OAAO,CAAC,CAAC,UAAU,CAAA;IACnB,OAAO,CAAC,CAAC,QAAQ,CAAA;IACjB,OAAO,CAAC,CAAC,WAAW,CAAA;IACpB,OAAO,CAAC,CAAC,KAAK,CAAA;IAEd,IAAI,CAAC,CAAC,aAAa,EAAE;QACnB,CAAC,CAAC,IAAI,GAAG,CAAC,CAAC,aAAa,CAAA;KACzB;IACD,OAAO,CAAC,CAAA;AACV,CAAC;AA/DD,kCA+DC"}
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@@ -1 +1 @@
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{"version":3,"file":"configSchema.js","sourceRoot":"","sources":["../../src/GtfAdapter/configSchema.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,mBAAmB,EAAE,MAAM,6BAA6B,CAAA;AAEjE
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{"version":3,"file":"configSchema.js","sourceRoot":"","sources":["../../src/GtfAdapter/configSchema.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,mBAAmB,EAAE,MAAM,6BAA6B,CAAA;AAEjE;;;GAGG;AACH,SAAS,CAAC,KAAI,CAAC,CAAC,wDAAwD;AAExE,MAAM,UAAU,GAAG,mBAAmB,CACpC,YAAY,EACZ;IACE;;OAEG;IACH,WAAW,EAAE;QACX,IAAI,EAAE,cAAc;QACpB,YAAY,EAAE,EAAE,GAAG,EAAE,iBAAiB,EAAE,YAAY,EAAE,aAAa,EAAE;KACtE;CACF,EACD,EAAE,eAAe,EAAE,IAAI,EAAE,CAC1B,CAAA;AAED,eAAe,UAAU,CAAA"}
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package/esm/util.js
CHANGED
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@@ -32,7 +32,7 @@ export function featureData(data) {
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// gtf uses double quotes for text values in the attributes column,
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// remove them
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attr = `${attr[0]}`.
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attr = `${attr[0]}`.replaceAll(/^"|"$/g, '');
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}
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f[b] = attr;
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}
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package/esm/util.js.map
CHANGED
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{"version":3,"file":"util.js","sourceRoot":"","sources":["../src/util.ts"],"names":[],"mappings":"AAaA,MAAM,UAAU,WAAW,CAAC,IAAgB;IAC1C,MAAM,CAAC,GAA4B,EAAE,GAAG,IAAI,EAAE,CAC7C;IAAC,CAAC,CAAC,KAAgB,IAAI,CAAC,CAAA,CAAC,uBAAuB;IACjD,CAAC,CAAC,MAAM,GAAG,EAAE,GAAG,EAAE,CAAC,EAAE,GAAG,EAAE,CAAC,CAAC,EAAE,GAAG,EAAE,CAAC,EAAE,GAAG,EAAE,SAAS,EAAE,CAAC,IAAI,CAAC,MAAM,CAAC,CAAA,CAAC,iBAAiB;IACrF,CAAC,CAAC,KAAK,GAAG,MAAM,CAAC,IAAI,CAAC,KAAK,CAAC,CAAA;IAC5B,CAAC,CAAC,OAAO,GAAG,IAAI,CAAC,QAAQ,CAAA;IACzB,IAAI,IAAI,CAAC,KAAK,KAAK,IAAI,EAAE;QACvB,OAAO,CAAC,CAAC,KAAK,CAAA;KACf;IACD,IAAI,IAAI,CAAC,KAAK,KAAK,IAAI,EAAE;QACvB,OAAO,CAAC,CAAC,KAAK,CAAA;KACf;IACD,MAAM,aAAa,GAAG,IAAI,GAAG,CAAC;QAC5B,OAAO;QACP,KAAK;QACL,UAAU;QACV,OAAO;QACP,aAAa;QACb,QAAQ;QACR,OAAO;QACP,QAAQ;KACT,CAAC,CAAA;IACF,KAAK,MAAM,CAAC,IAAI,MAAM,CAAC,IAAI,CAAC,IAAI,CAAC,UAAU,CAAC,EAAE;QAC5C,IAAI,CAAC,GAAG,CAAC,CAAC,WAAW,EAAE,CAAA;QACvB,IAAI,aAAa,CAAC,GAAG,CAAC,CAAC,CAAC,EAAE;YACxB,gDAAgD;YAChD,gCAAgC;YAChC,CAAC,IAAI,GAAG,CAAA;SACT;QACD,IAAI,IAAI,CAAC,UAAU,CAAC,CAAC,CAAC,KAAK,IAAI,EAAE;YAC/B,IAAI,IAAI,GAAG,IAAI,CAAC,UAAU,CAAC,CAAC,CAAsB,CAAA;YAClD,IAAI,KAAK,CAAC,OAAO,CAAC,IAAI,CAAC,IAAI,IAAI,CAAC,MAAM,KAAK,CAAC,EAAE;gBAC5C,mEAAmE;gBACnE,cAAc;gBACd,IAAI,GAAG,GAAG,IAAI,CAAC,CAAC,CAAC,EAAE,CAAC,
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{"version":3,"file":"util.js","sourceRoot":"","sources":["../src/util.ts"],"names":[],"mappings":"AAaA,MAAM,UAAU,WAAW,CAAC,IAAgB;IAC1C,MAAM,CAAC,GAA4B,EAAE,GAAG,IAAI,EAAE,CAC7C;IAAC,CAAC,CAAC,KAAgB,IAAI,CAAC,CAAA,CAAC,uBAAuB;IACjD,CAAC,CAAC,MAAM,GAAG,EAAE,GAAG,EAAE,CAAC,EAAE,GAAG,EAAE,CAAC,CAAC,EAAE,GAAG,EAAE,CAAC,EAAE,GAAG,EAAE,SAAS,EAAE,CAAC,IAAI,CAAC,MAAM,CAAC,CAAA,CAAC,iBAAiB;IACrF,CAAC,CAAC,KAAK,GAAG,MAAM,CAAC,IAAI,CAAC,KAAK,CAAC,CAAA;IAC5B,CAAC,CAAC,OAAO,GAAG,IAAI,CAAC,QAAQ,CAAA;IACzB,IAAI,IAAI,CAAC,KAAK,KAAK,IAAI,EAAE;QACvB,OAAO,CAAC,CAAC,KAAK,CAAA;KACf;IACD,IAAI,IAAI,CAAC,KAAK,KAAK,IAAI,EAAE;QACvB,OAAO,CAAC,CAAC,KAAK,CAAA;KACf;IACD,MAAM,aAAa,GAAG,IAAI,GAAG,CAAC;QAC5B,OAAO;QACP,KAAK;QACL,UAAU;QACV,OAAO;QACP,aAAa;QACb,QAAQ;QACR,OAAO;QACP,QAAQ;KACT,CAAC,CAAA;IACF,KAAK,MAAM,CAAC,IAAI,MAAM,CAAC,IAAI,CAAC,IAAI,CAAC,UAAU,CAAC,EAAE;QAC5C,IAAI,CAAC,GAAG,CAAC,CAAC,WAAW,EAAE,CAAA;QACvB,IAAI,aAAa,CAAC,GAAG,CAAC,CAAC,CAAC,EAAE;YACxB,gDAAgD;YAChD,gCAAgC;YAChC,CAAC,IAAI,GAAG,CAAA;SACT;QACD,IAAI,IAAI,CAAC,UAAU,CAAC,CAAC,CAAC,KAAK,IAAI,EAAE;YAC/B,IAAI,IAAI,GAAG,IAAI,CAAC,UAAU,CAAC,CAAC,CAAsB,CAAA;YAClD,IAAI,KAAK,CAAC,OAAO,CAAC,IAAI,CAAC,IAAI,IAAI,CAAC,MAAM,KAAK,CAAC,EAAE;gBAC5C,mEAAmE;gBACnE,cAAc;gBACd,IAAI,GAAG,GAAG,IAAI,CAAC,CAAC,CAAC,EAAE,CAAC,UAAU,CAAC,QAAQ,EAAE,EAAE,CAAC,CAAA;aAC7C;YACD,CAAC,CAAC,CAAC,CAAC,GAAG,IAAI,CAAA;SACZ;KACF;IACD,CAAC,CAAC,OAAO,GAAG,CAAC,CAAC,QAAQ,CAAA;IACtB,CAAC,CAAC,IAAI,GAAG,CAAC,CAAC,WAAW,CAAA;IAEtB,gFAAgF;IAChF,IAAI,IAAI,CAAC,cAAc,IAAI,IAAI,CAAC,cAAc,CAAC,MAAM,GAAG,CAAC,EAAE;QACzD,CAAC,CAAC,WAAW,GAAG,IAAI,CAAC,cAAc,CAAC,OAAO,CAAC,SAAS,CAAC,EAAE,CACtD,SAAS,CAAC,GAAG,CAAC,QAAQ,CAAC,EAAE,CAAC,WAAW,CAAC,QAAQ,CAAC,CAAC,CACjD,CAAA;KACF;IAED,OAAO,CAAC,CAAC,cAAc,CAAA;IACvB,OAAO,CAAC,CAAC,IAAI,CAAA;IACb,OAAO,CAAC,CAAC,gBAAgB,CAAA;IACzB,gDAAgD;IAChD,OAAO,CAAC,CAAC,SAAS,CAAA;IAClB,OAAO,CAAC,CAAC,UAAU,CAAA;IACnB,OAAO,CAAC,CAAC,QAAQ,CAAA;IACjB,OAAO,CAAC,CAAC,WAAW,CAAA;IACpB,OAAO,CAAC,CAAC,KAAK,CAAA;IAEd,IAAI,CAAC,CAAC,aAAa,EAAE;QACnB,CAAC,CAAC,IAAI,GAAG,CAAC,CAAC,aAAa,CAAA;KACzB;IACD,OAAO,CAAC,CAAA;AACV,CAAC"}
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package/package.json
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{
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"name": "@jbrowse/plugin-gtf",
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"version": "2.
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"version": "2.6.1",
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"description": "JBrowse 2 gtf feature adapter",
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"keywords": [
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"dependencies": {
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"@flatten-js/interval-tree": "^1.0.15",
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"@gmod/bgzf-filehandle": "^1.4.3",
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"@gmod/gtf": "^0.0.
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"@gmod/gtf": "^0.0.8"
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},
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"peerDependencies": {
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"@jbrowse/core": "^2.0.0",
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"distModule": "esm/index.js",
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"srcModule": "src/index.ts",
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"module": "esm/index.js",
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"gitHead": "
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"gitHead": "1cbe7ba097fb2d2763c776e5e429e4670cdd583c"
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}
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package/src/util.ts
CHANGED
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if (Array.isArray(attr) && attr.length === 1) {
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// gtf uses double quotes for text values in the attributes column,
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// remove them
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attr = `${attr[0]}`.
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attr = `${attr[0]}`.replaceAll(/^"|"$/g, '')
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