@jbrowse/plugin-gtf 2.3.3 → 2.4.0
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/dist/GtfAdapter/GtfAdapter.d.ts +1 -1
- package/dist/GtfAdapter/GtfAdapter.js +5 -4
- package/dist/GtfAdapter/GtfAdapter.js.map +1 -1
- package/esm/GtfAdapter/GtfAdapter.d.ts +1 -1
- package/esm/GtfAdapter/GtfAdapter.js +2 -1
- package/esm/GtfAdapter/GtfAdapter.js.map +1 -1
- package/package.json +2 -2
- package/src/GtfAdapter/GtfAdapter.ts +4 -1
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@@ -1,7 +1,7 @@
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1
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import { BaseFeatureDataAdapter, BaseOptions } from '@jbrowse/core/data_adapters/BaseAdapter';
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import { NoAssemblyRegion } from '@jbrowse/core/util/types';
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import IntervalTree from '@flatten-js/interval-tree';
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-
import { Feature } from '@jbrowse/core/util
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4
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+
import { Feature } from '@jbrowse/core/util';
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export default class extends BaseFeatureDataAdapter {
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protected gtfFeatures?: Promise<{
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feats: {
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@@ -7,10 +7,11 @@ const BaseAdapter_1 = require("@jbrowse/core/data_adapters/BaseAdapter");
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const io_1 = require("@jbrowse/core/util/io");
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const rxjs_1 = require("@jbrowse/core/util/rxjs");
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const interval_tree_1 = __importDefault(require("@flatten-js/interval-tree"));
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-
const
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const util_1 = require("@jbrowse/core/util");
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const bgzf_filehandle_1 = require("@gmod/bgzf-filehandle");
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const gtf_1 = __importDefault(require("@gmod/gtf"));
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-
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+
// locals
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const util_2 = require("../util");
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function isGzip(buf) {
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return buf[0] === 31 && buf[1] === 139 && buf[2] === 8;
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}
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@@ -72,8 +73,8 @@ class default_1 extends BaseAdapter_1.BaseFeatureDataAdapter {
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parseSequences: false,
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});
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const intervalTree = new interval_tree_1.default();
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75
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-
const ret = data.flat().map((f, i) => new
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data: (0,
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const ret = data.flat().map((f, i) => new util_1.SimpleFeature({
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data: (0, util_2.featureData)(f),
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id: `${this.id}-${refName}-${i}`,
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}));
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for (let i = 0; i < ret.length; i++) {
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@@ -1 +1 @@
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1
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-
{"version":3,"file":"GtfAdapter.js","sourceRoot":"","sources":["../../src/GtfAdapter/GtfAdapter.ts"],"names":[],"mappings":";;;;;AAAA,yEAGgD;AAEhD,8CAAoD;AACpD,kDAA0D;AAC1D,8EAAoD;AACpD,
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1
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+
{"version":3,"file":"GtfAdapter.js","sourceRoot":"","sources":["../../src/GtfAdapter/GtfAdapter.ts"],"names":[],"mappings":";;;;;AAAA,yEAGgD;AAEhD,8CAAoD;AACpD,kDAA0D;AAC1D,8EAAoD;AACpD,6CAA2D;AAC3D,2DAA6C;AAC7C,oDAA2B;AAE3B,SAAS;AACT,kCAAiD;AAEjD,SAAS,MAAM,CAAC,GAAW;IACzB,OAAO,GAAG,CAAC,CAAC,CAAC,KAAK,EAAE,IAAI,GAAG,CAAC,CAAC,CAAC,KAAK,GAAG,IAAI,GAAG,CAAC,CAAC,CAAC,KAAK,CAAC,CAAA;AACxD,CAAC;AAED,eAAqB,SAAQ,oCAAsB;IAAnD;;QAKY,kBAAa,GAEnB,EAAE,CAAA;IAuGR,CAAC;IArGS,KAAK,CAAC,SAAS,CAAC,OAAoB,EAAE;QAC5C,MAAM,MAAM,GAAG,IAAI,CAAC,OAAO,CAAC,aAAa,CAAC,CAAA;QAC1C,MAAM,MAAM,GAAG,MAAM,IAAA,iBAAY,EAAC,MAAM,EAAE,IAAI,CAAC,aAAa,CAAC,CAAC,QAAQ,CAAC,IAAI,CAAC,CAAA;QAE5E,MAAM,GAAG,GAAG,MAAM,CAAC,MAAM,CAAC,CAAC,CAAC,CAAC,MAAM,IAAA,uBAAK,EAAC,MAAM,CAAC,CAAC,CAAC,CAAC,MAAM,CAAA;QACzD,2CAA2C;QAC3C,IAAI,GAAG,CAAC,MAAM,GAAG,SAAW,EAAE;YAC5B,MAAM,IAAI,KAAK,CAAC,4CAA4C,CAAC,CAAA;SAC9D;QACD,MAAM,IAAI,GAAG,IAAI,WAAW,CAAC,MAAM,EAAE,EAAE,KAAK,EAAE,IAAI,EAAE,CAAC,CAAC,MAAM,CAAC,GAAG,CAAC,CAAA;QAEjE,MAAM,KAAK,GAAG,IAAI;aACf,KAAK,CAAC,YAAY,CAAC;aACnB,MAAM,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,CAAC,IAAI,CAAC,CAAC,CAAC,UAAU,CAAC,GAAG,CAAC,CAAC,CAAA;QACzC,MAAM,KAAK,GAAG,EAAiC,CAAA;QAC/C,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,KAAK,CAAC,MAAM,EAAE,CAAC,EAAE,EAAE;YACrC,MAAM,IAAI,GAAG,KAAK,CAAC,CAAC,CAAC,CAAA;YACrB,IAAI,IAAI,CAAC,UAAU,CAAC,GAAG,CAAC,EAAE;gBACxB,SAAQ;aACT;YACD,MAAM,GAAG,GAAG,IAAI,CAAC,OAAO,CAAC,IAAI,CAAC,CAAA;YAC9B,MAAM,OAAO,GAAG,IAAI,CAAC,KAAK,CAAC,CAAC,EAAE,GAAG,CAAC,CAAA;YAClC,IAAI,CAAC,KAAK,CAAC,OAAO,CAAC,EAAE;gBACnB,KAAK,CAAC,OAAO,CAAC,GAAG,EAAE,CAAA;aACpB;YACD,KAAK,CAAC,OAAO,CAAC,CAAC,IAAI,CAAC,KAAK,CAAC,CAAC,CAAC,CAAC,CAAA;SAC9B;QAED,OAAO,EAAE,KAAK,EAAE,CAAA;IAClB,CAAC;IAEO,KAAK,CAAC,QAAQ,CAAC,OAAoB,EAAE;QAC3C,IAAI,CAAC,IAAI,CAAC,WAAW,EAAE;YACrB,IAAI,CAAC,WAAW,GAAG,IAAI,CAAC,SAAS,CAAC,IAAI,CAAC,CAAC,KAAK,CAAC,CAAC,CAAC,EAAE;gBAChD,IAAI,CAAC,WAAW,GAAG,SAAS,CAAA;gBAC5B,MAAM,CAAC,CAAA;YACT,CAAC,CAAC,CAAA;SACH;QAED,OAAO,IAAI,CAAC,WAAW,CAAA;IACzB,CAAC;IAEM,KAAK,CAAC,WAAW,CAAC,OAAoB,EAAE;QAC7C,MAAM,EAAE,KAAK,EAAE,GAAG,MAAM,IAAI,CAAC,QAAQ,CAAC,IAAI,CAAC,CAAA;QAC3C,OAAO,MAAM,CAAC,IAAI,CAAC,KAAK,CAAC,CAAA;IAC3B,CAAC;IAEO,KAAK,CAAC,6BAA6B,CAAC,OAAe;QACzD,MAAM,EAAE,KAAK,EAAE,GAAG,MAAM,IAAI,CAAC,QAAQ,EAAE,CAAA;QACvC,MAAM,KAAK,GAAG,KAAK,CAAC,OAAO,CAAC,CAAA;QAC5B,IAAI,CAAC,KAAK,EAAE;YACV,OAAO,SAAS,CAAA;SACjB;QACD,MAAM,IAAI,GAAG,aAAG,CAAC,eAAe,CAAC,KAAK,CAAC,IAAI,CAAC,IAAI,CAAC,EAAE;YACjD,aAAa,EAAE,IAAI;YACnB,aAAa,EAAE,KAAK;YACpB,eAAe,EAAE,KAAK;YACtB,cAAc,EAAE,KAAK;SACtB,CAAmB,CAAA;QAEpB,MAAM,YAAY,GAAG,IAAI,uBAAY,EAAE,CAAA;QACvC,MAAM,GAAG,GAAG,IAAI,CAAC,IAAI,EAAE,CAAC,GAAG,CACzB,CAAC,CAAC,EAAE,CAAC,EAAE,EAAE,CACP,IAAI,oBAAa,CAAC;YAChB,IAAI,EAAE,IAAA,kBAAW,EAAC,CAAC,CAAC;YACpB,EAAE,EAAE,GAAG,IAAI,CAAC,EAAE,IAAI,OAAO,IAAI,CAAC,EAAE;SACjC,CAAC,CACL,CAAA;QAED,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,GAAG,CAAC,MAAM,EAAE,CAAC,EAAE,EAAE;YACnC,MAAM,GAAG,GAAG,GAAG,CAAC,CAAC,CAAC,CAAA;YAClB,YAAY,CAAC,MAAM,CAAC,CAAC,GAAG,CAAC,GAAG,CAAC,OAAO,CAAC,EAAE,GAAG,CAAC,GAAG,CAAC,KAAK,CAAC,CAAC,EAAE,GAAG,CAAC,CAAA;SAC7D;QACD,OAAO,YAAY,CAAA;IACrB,CAAC;IAEO,KAAK,CAAC,uBAAuB,CAAC,OAAe;QACnD,IAAI,CAAC,IAAI,CAAC,aAAa,CAAC,OAAO,CAAC,EAAE;YAChC,IAAI,CAAC,aAAa,CAAC,OAAO,CAAC,GAAG,IAAI,CAAC,6BAA6B,CAC9D,OAAO,CACR,CAAC,KAAK,CAAC,CAAC,CAAC,EAAE;gBACV,IAAI,CAAC,aAAa,CAAC,OAAO,CAAC,GAAG,SAAS,CAAA;gBACvC,MAAM,CAAC,CAAA;YACT,CAAC,CAAC,CAAA;SACH;QACD,OAAO,IAAI,CAAC,aAAa,CAAC,OAAO,CAAC,CAAA;IACpC,CAAC;IAEM,WAAW,CAAC,KAAuB,EAAE,OAAoB,EAAE;QAChE,OAAO,IAAA,uBAAgB,EAAU,KAAK,EAAC,QAAQ,EAAC,EAAE;YAChD,IAAI;gBACF,MAAM,EAAE,KAAK,EAAE,GAAG,EAAE,OAAO,EAAE,GAAG,KAAK,CAAA;gBACrC,MAAM,YAAY,GAAG,MAAM,IAAI,CAAC,uBAAuB,CAAC,OAAO,CAAC,CAAA;gBAChE,YAAY,aAAZ,YAAY,uBAAZ,YAAY,CAAE,MAAM,CAAC,CAAC,KAAK,EAAE,GAAG,CAAC,EAAE,OAAO,CAAC,CAAC,CAAC,EAAE,CAAC,QAAQ,CAAC,IAAI,CAAC,CAAC,CAAC,CAAC,CAAA;gBACjE,QAAQ,CAAC,QAAQ,EAAE,CAAA;aACpB;YAAC,OAAO,CAAC,EAAE;gBACV,QAAQ,CAAC,KAAK,CAAC,CAAC,CAAC,CAAA;aAClB;QACH,CAAC,EAAE,IAAI,CAAC,MAAM,CAAC,CAAA;IACjB,CAAC;IACM,aAAa,EAAC,gBAAgB,IAAG,CAAC;CAC1C;AA9GD,4BA8GC"}
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@@ -1,7 +1,7 @@
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import { BaseFeatureDataAdapter, BaseOptions } from '@jbrowse/core/data_adapters/BaseAdapter';
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import { NoAssemblyRegion } from '@jbrowse/core/util/types';
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import IntervalTree from '@flatten-js/interval-tree';
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import { Feature } from '@jbrowse/core/util
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import { Feature } from '@jbrowse/core/util';
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export default class extends BaseFeatureDataAdapter {
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protected gtfFeatures?: Promise<{
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feats: {
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@@ -2,9 +2,10 @@ import { BaseFeatureDataAdapter, } from '@jbrowse/core/data_adapters/BaseAdapter
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import { openLocation } from '@jbrowse/core/util/io';
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import { ObservableCreate } from '@jbrowse/core/util/rxjs';
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import IntervalTree from '@flatten-js/interval-tree';
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import SimpleFeature from '@jbrowse/core/util
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import { SimpleFeature } from '@jbrowse/core/util';
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import { unzip } from '@gmod/bgzf-filehandle';
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import gtf from '@gmod/gtf';
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// locals
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import { featureData } from '../util';
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function isGzip(buf) {
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return buf[0] === 31 && buf[1] === 139 && buf[2] === 8;
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@@ -1 +1 @@
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-
{"version":3,"file":"GtfAdapter.js","sourceRoot":"","sources":["../../src/GtfAdapter/GtfAdapter.ts"],"names":[],"mappings":"AAAA,OAAO,EACL,sBAAsB,GAEvB,MAAM,yCAAyC,CAAA;AAEhD,OAAO,EAAE,YAAY,EAAE,MAAM,uBAAuB,CAAA;AACpD,OAAO,EAAE,gBAAgB,EAAE,MAAM,yBAAyB,CAAA;AAC1D,OAAO,YAAY,MAAM,2BAA2B,CAAA;AACpD,OAAO,
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{"version":3,"file":"GtfAdapter.js","sourceRoot":"","sources":["../../src/GtfAdapter/GtfAdapter.ts"],"names":[],"mappings":"AAAA,OAAO,EACL,sBAAsB,GAEvB,MAAM,yCAAyC,CAAA;AAEhD,OAAO,EAAE,YAAY,EAAE,MAAM,uBAAuB,CAAA;AACpD,OAAO,EAAE,gBAAgB,EAAE,MAAM,yBAAyB,CAAA;AAC1D,OAAO,YAAY,MAAM,2BAA2B,CAAA;AACpD,OAAO,EAAE,aAAa,EAAW,MAAM,oBAAoB,CAAA;AAC3D,OAAO,EAAE,KAAK,EAAE,MAAM,uBAAuB,CAAA;AAC7C,OAAO,GAAG,MAAM,WAAW,CAAA;AAE3B,SAAS;AACT,OAAO,EAAc,WAAW,EAAE,MAAM,SAAS,CAAA;AAEjD,SAAS,MAAM,CAAC,GAAW;IACzB,OAAO,GAAG,CAAC,CAAC,CAAC,KAAK,EAAE,IAAI,GAAG,CAAC,CAAC,CAAC,KAAK,GAAG,IAAI,GAAG,CAAC,CAAC,CAAC,KAAK,CAAC,CAAA;AACxD,CAAC;AAED,MAAM,CAAC,OAAO,MAAO,SAAQ,sBAAsB;IAAnD;;QAKY,kBAAa,GAEnB,EAAE,CAAA;IAuGR,CAAC;IArGS,KAAK,CAAC,SAAS,CAAC,OAAoB,EAAE;QAC5C,MAAM,MAAM,GAAG,IAAI,CAAC,OAAO,CAAC,aAAa,CAAC,CAAA;QAC1C,MAAM,MAAM,GAAG,MAAM,YAAY,CAAC,MAAM,EAAE,IAAI,CAAC,aAAa,CAAC,CAAC,QAAQ,CAAC,IAAI,CAAC,CAAA;QAE5E,MAAM,GAAG,GAAG,MAAM,CAAC,MAAM,CAAC,CAAC,CAAC,CAAC,MAAM,KAAK,CAAC,MAAM,CAAC,CAAC,CAAC,CAAC,MAAM,CAAA;QACzD,2CAA2C;QAC3C,IAAI,GAAG,CAAC,MAAM,GAAG,SAAW,EAAE;YAC5B,MAAM,IAAI,KAAK,CAAC,4CAA4C,CAAC,CAAA;SAC9D;QACD,MAAM,IAAI,GAAG,IAAI,WAAW,CAAC,MAAM,EAAE,EAAE,KAAK,EAAE,IAAI,EAAE,CAAC,CAAC,MAAM,CAAC,GAAG,CAAC,CAAA;QAEjE,MAAM,KAAK,GAAG,IAAI;aACf,KAAK,CAAC,YAAY,CAAC;aACnB,MAAM,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,CAAC,IAAI,CAAC,CAAC,CAAC,UAAU,CAAC,GAAG,CAAC,CAAC,CAAA;QACzC,MAAM,KAAK,GAAG,EAAiC,CAAA;QAC/C,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,KAAK,CAAC,MAAM,EAAE,CAAC,EAAE,EAAE;YACrC,MAAM,IAAI,GAAG,KAAK,CAAC,CAAC,CAAC,CAAA;YACrB,IAAI,IAAI,CAAC,UAAU,CAAC,GAAG,CAAC,EAAE;gBACxB,SAAQ;aACT;YACD,MAAM,GAAG,GAAG,IAAI,CAAC,OAAO,CAAC,IAAI,CAAC,CAAA;YAC9B,MAAM,OAAO,GAAG,IAAI,CAAC,KAAK,CAAC,CAAC,EAAE,GAAG,CAAC,CAAA;YAClC,IAAI,CAAC,KAAK,CAAC,OAAO,CAAC,EAAE;gBACnB,KAAK,CAAC,OAAO,CAAC,GAAG,EAAE,CAAA;aACpB;YACD,KAAK,CAAC,OAAO,CAAC,CAAC,IAAI,CAAC,KAAK,CAAC,CAAC,CAAC,CAAC,CAAA;SAC9B;QAED,OAAO,EAAE,KAAK,EAAE,CAAA;IAClB,CAAC;IAEO,KAAK,CAAC,QAAQ,CAAC,OAAoB,EAAE;QAC3C,IAAI,CAAC,IAAI,CAAC,WAAW,EAAE;YACrB,IAAI,CAAC,WAAW,GAAG,IAAI,CAAC,SAAS,CAAC,IAAI,CAAC,CAAC,KAAK,CAAC,CAAC,CAAC,EAAE;gBAChD,IAAI,CAAC,WAAW,GAAG,SAAS,CAAA;gBAC5B,MAAM,CAAC,CAAA;YACT,CAAC,CAAC,CAAA;SACH;QAED,OAAO,IAAI,CAAC,WAAW,CAAA;IACzB,CAAC;IAEM,KAAK,CAAC,WAAW,CAAC,OAAoB,EAAE;QAC7C,MAAM,EAAE,KAAK,EAAE,GAAG,MAAM,IAAI,CAAC,QAAQ,CAAC,IAAI,CAAC,CAAA;QAC3C,OAAO,MAAM,CAAC,IAAI,CAAC,KAAK,CAAC,CAAA;IAC3B,CAAC;IAEO,KAAK,CAAC,6BAA6B,CAAC,OAAe;QACzD,MAAM,EAAE,KAAK,EAAE,GAAG,MAAM,IAAI,CAAC,QAAQ,EAAE,CAAA;QACvC,MAAM,KAAK,GAAG,KAAK,CAAC,OAAO,CAAC,CAAA;QAC5B,IAAI,CAAC,KAAK,EAAE;YACV,OAAO,SAAS,CAAA;SACjB;QACD,MAAM,IAAI,GAAG,GAAG,CAAC,eAAe,CAAC,KAAK,CAAC,IAAI,CAAC,IAAI,CAAC,EAAE;YACjD,aAAa,EAAE,IAAI;YACnB,aAAa,EAAE,KAAK;YACpB,eAAe,EAAE,KAAK;YACtB,cAAc,EAAE,KAAK;SACtB,CAAmB,CAAA;QAEpB,MAAM,YAAY,GAAG,IAAI,YAAY,EAAE,CAAA;QACvC,MAAM,GAAG,GAAG,IAAI,CAAC,IAAI,EAAE,CAAC,GAAG,CACzB,CAAC,CAAC,EAAE,CAAC,EAAE,EAAE,CACP,IAAI,aAAa,CAAC;YAChB,IAAI,EAAE,WAAW,CAAC,CAAC,CAAC;YACpB,EAAE,EAAE,GAAG,IAAI,CAAC,EAAE,IAAI,OAAO,IAAI,CAAC,EAAE;SACjC,CAAC,CACL,CAAA;QAED,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,GAAG,CAAC,MAAM,EAAE,CAAC,EAAE,EAAE;YACnC,MAAM,GAAG,GAAG,GAAG,CAAC,CAAC,CAAC,CAAA;YAClB,YAAY,CAAC,MAAM,CAAC,CAAC,GAAG,CAAC,GAAG,CAAC,OAAO,CAAC,EAAE,GAAG,CAAC,GAAG,CAAC,KAAK,CAAC,CAAC,EAAE,GAAG,CAAC,CAAA;SAC7D;QACD,OAAO,YAAY,CAAA;IACrB,CAAC;IAEO,KAAK,CAAC,uBAAuB,CAAC,OAAe;QACnD,IAAI,CAAC,IAAI,CAAC,aAAa,CAAC,OAAO,CAAC,EAAE;YAChC,IAAI,CAAC,aAAa,CAAC,OAAO,CAAC,GAAG,IAAI,CAAC,6BAA6B,CAC9D,OAAO,CACR,CAAC,KAAK,CAAC,CAAC,CAAC,EAAE;gBACV,IAAI,CAAC,aAAa,CAAC,OAAO,CAAC,GAAG,SAAS,CAAA;gBACvC,MAAM,CAAC,CAAA;YACT,CAAC,CAAC,CAAA;SACH;QACD,OAAO,IAAI,CAAC,aAAa,CAAC,OAAO,CAAC,CAAA;IACpC,CAAC;IAEM,WAAW,CAAC,KAAuB,EAAE,OAAoB,EAAE;QAChE,OAAO,gBAAgB,CAAU,KAAK,EAAC,QAAQ,EAAC,EAAE;YAChD,IAAI;gBACF,MAAM,EAAE,KAAK,EAAE,GAAG,EAAE,OAAO,EAAE,GAAG,KAAK,CAAA;gBACrC,MAAM,YAAY,GAAG,MAAM,IAAI,CAAC,uBAAuB,CAAC,OAAO,CAAC,CAAA;gBAChE,YAAY,aAAZ,YAAY,uBAAZ,YAAY,CAAE,MAAM,CAAC,CAAC,KAAK,EAAE,GAAG,CAAC,EAAE,OAAO,CAAC,CAAC,CAAC,EAAE,CAAC,QAAQ,CAAC,IAAI,CAAC,CAAC,CAAC,CAAC,CAAA;gBACjE,QAAQ,CAAC,QAAQ,EAAE,CAAA;aACpB;YAAC,OAAO,CAAC,EAAE;gBACV,QAAQ,CAAC,KAAK,CAAC,CAAC,CAAC,CAAA;aAClB;QACH,CAAC,EAAE,IAAI,CAAC,MAAM,CAAC,CAAA;IACjB,CAAC;IACM,aAAa,EAAC,gBAAgB,IAAG,CAAC;CAC1C"}
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package/package.json
CHANGED
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@@ -1,6 +1,6 @@
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{
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"name": "@jbrowse/plugin-gtf",
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"version": "2.
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"version": "2.4.0",
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"description": "JBrowse 2 gtf feature adapter",
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"keywords": [
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"jbrowse",
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@@ -57,5 +57,5 @@
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"distModule": "esm/index.js",
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"srcModule": "src/index.ts",
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"module": "esm/index.js",
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60
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-
"gitHead": "
|
|
60
|
+
"gitHead": "78707a2bc3ba8489f26a590ef83f62ede945d048"
|
|
61
61
|
}
|
|
@@ -6,10 +6,13 @@ import { NoAssemblyRegion } from '@jbrowse/core/util/types'
|
|
|
6
6
|
import { openLocation } from '@jbrowse/core/util/io'
|
|
7
7
|
import { ObservableCreate } from '@jbrowse/core/util/rxjs'
|
|
8
8
|
import IntervalTree from '@flatten-js/interval-tree'
|
|
9
|
-
import SimpleFeature,
|
|
9
|
+
import { SimpleFeature, Feature } from '@jbrowse/core/util'
|
|
10
10
|
import { unzip } from '@gmod/bgzf-filehandle'
|
|
11
11
|
import gtf from '@gmod/gtf'
|
|
12
|
+
|
|
13
|
+
// locals
|
|
12
14
|
import { FeatureLoc, featureData } from '../util'
|
|
15
|
+
|
|
13
16
|
function isGzip(buf: Buffer) {
|
|
14
17
|
return buf[0] === 31 && buf[1] === 139 && buf[2] === 8
|
|
15
18
|
}
|