@jbrowse/plugin-gtf 2.1.5 → 2.1.6
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
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@@ -28,7 +28,9 @@ class default_1 extends BaseAdapter_1.BaseFeatureDataAdapter {
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throw new Error('Data exceeds maximum string length (512MB)');
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}
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const data = new TextDecoder('utf8', { fatal: true }).decode(buf);
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-
const lines = data
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const lines = data
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.split(/\n|\r\n|\r/)
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.filter(f => !!f && !f.startsWith('#'));
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const feats = {};
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for (let i = 0; i < lines.length; i++) {
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const line = lines[i];
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@@ -1 +1 @@
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1
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-
{"version":3,"file":"GtfAdapter.js","sourceRoot":"","sources":["../../src/GtfAdapter/GtfAdapter.ts"],"names":[],"mappings":";;;;;AAAA,yEAGgD;AAEhD,8CAAoD;AACpD,kDAA0D;AAC1D,8EAAoD;AACpD,qFAAyE;AACzE,2DAA6C;AAC7C,oDAA2B;AAC3B,kCAAiD;AACjD,SAAS,MAAM,CAAC,GAAW;IACzB,OAAO,GAAG,CAAC,CAAC,CAAC,KAAK,EAAE,IAAI,GAAG,CAAC,CAAC,CAAC,KAAK,GAAG,IAAI,GAAG,CAAC,CAAC,CAAC,KAAK,CAAC,CAAA;AACxD,CAAC;AAED,eAAqB,SAAQ,oCAAsB;IAAnD;;QAKY,kBAAa,GAEnB,EAAE,CAAA;
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1
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+
{"version":3,"file":"GtfAdapter.js","sourceRoot":"","sources":["../../src/GtfAdapter/GtfAdapter.ts"],"names":[],"mappings":";;;;;AAAA,yEAGgD;AAEhD,8CAAoD;AACpD,kDAA0D;AAC1D,8EAAoD;AACpD,qFAAyE;AACzE,2DAA6C;AAC7C,oDAA2B;AAC3B,kCAAiD;AACjD,SAAS,MAAM,CAAC,GAAW;IACzB,OAAO,GAAG,CAAC,CAAC,CAAC,KAAK,EAAE,IAAI,GAAG,CAAC,CAAC,CAAC,KAAK,GAAG,IAAI,GAAG,CAAC,CAAC,CAAC,KAAK,CAAC,CAAA;AACxD,CAAC;AAED,eAAqB,SAAQ,oCAAsB;IAAnD;;QAKY,kBAAa,GAEnB,EAAE,CAAA;IAuGR,CAAC;IArGS,KAAK,CAAC,SAAS,CAAC,OAAoB,EAAE;QAC5C,MAAM,MAAM,GAAG,IAAI,CAAC,OAAO,CAAC,aAAa,CAAC,CAAA;QAC1C,MAAM,MAAM,GAAG,MAAM,IAAA,iBAAY,EAAC,MAAM,EAAE,IAAI,CAAC,aAAa,CAAC,CAAC,QAAQ,CAAC,IAAI,CAAC,CAAA;QAE5E,MAAM,GAAG,GAAG,MAAM,CAAC,MAAM,CAAC,CAAC,CAAC,CAAC,MAAM,IAAA,uBAAK,EAAC,MAAM,CAAC,CAAC,CAAC,CAAC,MAAM,CAAA;QACzD,2CAA2C;QAC3C,IAAI,GAAG,CAAC,MAAM,GAAG,SAAW,EAAE;YAC5B,MAAM,IAAI,KAAK,CAAC,4CAA4C,CAAC,CAAA;SAC9D;QACD,MAAM,IAAI,GAAG,IAAI,WAAW,CAAC,MAAM,EAAE,EAAE,KAAK,EAAE,IAAI,EAAE,CAAC,CAAC,MAAM,CAAC,GAAG,CAAC,CAAA;QAEjE,MAAM,KAAK,GAAG,IAAI;aACf,KAAK,CAAC,YAAY,CAAC;aACnB,MAAM,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,CAAC,IAAI,CAAC,CAAC,CAAC,UAAU,CAAC,GAAG,CAAC,CAAC,CAAA;QACzC,MAAM,KAAK,GAAG,EAAiC,CAAA;QAC/C,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,KAAK,CAAC,MAAM,EAAE,CAAC,EAAE,EAAE;YACrC,MAAM,IAAI,GAAG,KAAK,CAAC,CAAC,CAAC,CAAA;YACrB,IAAI,IAAI,CAAC,UAAU,CAAC,GAAG,CAAC,EAAE;gBACxB,SAAQ;aACT;YACD,MAAM,GAAG,GAAG,IAAI,CAAC,OAAO,CAAC,IAAI,CAAC,CAAA;YAC9B,MAAM,OAAO,GAAG,IAAI,CAAC,KAAK,CAAC,CAAC,EAAE,GAAG,CAAC,CAAA;YAClC,IAAI,CAAC,KAAK,CAAC,OAAO,CAAC,EAAE;gBACnB,KAAK,CAAC,OAAO,CAAC,GAAG,EAAE,CAAA;aACpB;YACD,KAAK,CAAC,OAAO,CAAC,CAAC,IAAI,CAAC,KAAK,CAAC,CAAC,CAAC,CAAC,CAAA;SAC9B;QAED,OAAO,EAAE,KAAK,EAAE,CAAA;IAClB,CAAC;IAEO,KAAK,CAAC,QAAQ,CAAC,OAAoB,EAAE;QAC3C,IAAI,CAAC,IAAI,CAAC,WAAW,EAAE;YACrB,IAAI,CAAC,WAAW,GAAG,IAAI,CAAC,SAAS,CAAC,IAAI,CAAC,CAAC,KAAK,CAAC,CAAC,CAAC,EAAE;gBAChD,IAAI,CAAC,WAAW,GAAG,SAAS,CAAA;gBAC5B,MAAM,CAAC,CAAA;YACT,CAAC,CAAC,CAAA;SACH;QAED,OAAO,IAAI,CAAC,WAAW,CAAA;IACzB,CAAC;IAEM,KAAK,CAAC,WAAW,CAAC,OAAoB,EAAE;QAC7C,MAAM,EAAE,KAAK,EAAE,GAAG,MAAM,IAAI,CAAC,QAAQ,CAAC,IAAI,CAAC,CAAA;QAC3C,OAAO,MAAM,CAAC,IAAI,CAAC,KAAK,CAAC,CAAA;IAC3B,CAAC;IAEO,KAAK,CAAC,6BAA6B,CAAC,OAAe;QACzD,MAAM,EAAE,KAAK,EAAE,GAAG,MAAM,IAAI,CAAC,QAAQ,EAAE,CAAA;QACvC,MAAM,KAAK,GAAG,KAAK,CAAC,OAAO,CAAC,CAAA;QAC5B,IAAI,CAAC,KAAK,EAAE;YACV,OAAO,SAAS,CAAA;SACjB;QACD,MAAM,IAAI,GAAG,aAAG,CAAC,eAAe,CAAC,KAAK,CAAC,IAAI,CAAC,IAAI,CAAC,EAAE;YACjD,aAAa,EAAE,IAAI;YACnB,aAAa,EAAE,KAAK;YACpB,eAAe,EAAE,KAAK;YACtB,cAAc,EAAE,KAAK;SACtB,CAAmB,CAAA;QAEpB,MAAM,YAAY,GAAG,IAAI,uBAAY,EAAE,CAAA;QACvC,MAAM,GAAG,GAAG,IAAI,CAAC,IAAI,EAAE,CAAC,GAAG,CACzB,CAAC,CAAC,EAAE,CAAC,EAAE,EAAE,CACP,IAAI,uBAAa,CAAC;YAChB,IAAI,EAAE,IAAA,kBAAW,EAAC,CAAC,CAAC;YACpB,EAAE,EAAE,GAAG,IAAI,CAAC,EAAE,IAAI,OAAO,IAAI,CAAC,EAAE;SACjC,CAAC,CACL,CAAA;QAED,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,GAAG,CAAC,MAAM,EAAE,CAAC,EAAE,EAAE;YACnC,MAAM,GAAG,GAAG,GAAG,CAAC,CAAC,CAAC,CAAA;YAClB,YAAY,CAAC,MAAM,CAAC,CAAC,GAAG,CAAC,GAAG,CAAC,OAAO,CAAC,EAAE,GAAG,CAAC,GAAG,CAAC,KAAK,CAAC,CAAC,EAAE,GAAG,CAAC,CAAA;SAC7D;QACD,OAAO,YAAY,CAAA;IACrB,CAAC;IAEO,KAAK,CAAC,uBAAuB,CAAC,OAAe;QACnD,IAAI,CAAC,IAAI,CAAC,aAAa,CAAC,OAAO,CAAC,EAAE;YAChC,IAAI,CAAC,aAAa,CAAC,OAAO,CAAC,GAAG,IAAI,CAAC,6BAA6B,CAC9D,OAAO,CACR,CAAC,KAAK,CAAC,CAAC,CAAC,EAAE;gBACV,IAAI,CAAC,aAAa,CAAC,OAAO,CAAC,GAAG,SAAS,CAAA;gBACvC,MAAM,CAAC,CAAA;YACT,CAAC,CAAC,CAAA;SACH;QACD,OAAO,IAAI,CAAC,aAAa,CAAC,OAAO,CAAC,CAAA;IACpC,CAAC;IAEM,WAAW,CAAC,KAAuB,EAAE,OAAoB,EAAE;QAChE,OAAO,IAAA,uBAAgB,EAAU,KAAK,EAAC,QAAQ,EAAC,EAAE;YAChD,IAAI;gBACF,MAAM,EAAE,KAAK,EAAE,GAAG,EAAE,OAAO,EAAE,GAAG,KAAK,CAAA;gBACrC,MAAM,YAAY,GAAG,MAAM,IAAI,CAAC,uBAAuB,CAAC,OAAO,CAAC,CAAA;gBAChE,YAAY,aAAZ,YAAY,uBAAZ,YAAY,CAAE,MAAM,CAAC,CAAC,KAAK,EAAE,GAAG,CAAC,EAAE,OAAO,CAAC,CAAC,CAAC,EAAE,CAAC,QAAQ,CAAC,IAAI,CAAC,CAAC,CAAC,CAAC,CAAA;gBACjE,QAAQ,CAAC,QAAQ,EAAE,CAAA;aACpB;YAAC,OAAO,CAAC,EAAE;gBACV,QAAQ,CAAC,KAAK,CAAC,CAAC,CAAC,CAAA;aAClB;QACH,CAAC,EAAE,IAAI,CAAC,MAAM,CAAC,CAAA;IACjB,CAAC;IACM,aAAa,EAAC,gBAAgB,IAAG,CAAC;CAC1C;AA9GD,4BA8GC"}
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@@ -23,7 +23,9 @@ export default class extends BaseFeatureDataAdapter {
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throw new Error('Data exceeds maximum string length (512MB)');
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}
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const data = new TextDecoder('utf8', { fatal: true }).decode(buf);
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const lines = data
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const lines = data
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.split(/\n|\r\n|\r/)
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.filter(f => !!f && !f.startsWith('#'));
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const feats = {};
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for (let i = 0; i < lines.length; i++) {
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const line = lines[i];
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@@ -1 +1 @@
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1
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-
{"version":3,"file":"GtfAdapter.js","sourceRoot":"","sources":["../../src/GtfAdapter/GtfAdapter.ts"],"names":[],"mappings":"AAAA,OAAO,EACL,sBAAsB,GAEvB,MAAM,yCAAyC,CAAA;AAEhD,OAAO,EAAE,YAAY,EAAE,MAAM,uBAAuB,CAAA;AACpD,OAAO,EAAE,gBAAgB,EAAE,MAAM,yBAAyB,CAAA;AAC1D,OAAO,YAAY,MAAM,2BAA2B,CAAA;AACpD,OAAO,aAA0B,MAAM,kCAAkC,CAAA;AACzE,OAAO,EAAE,KAAK,EAAE,MAAM,uBAAuB,CAAA;AAC7C,OAAO,GAAG,MAAM,WAAW,CAAA;AAC3B,OAAO,EAAc,WAAW,EAAE,MAAM,SAAS,CAAA;AACjD,SAAS,MAAM,CAAC,GAAW;IACzB,OAAO,GAAG,CAAC,CAAC,CAAC,KAAK,EAAE,IAAI,GAAG,CAAC,CAAC,CAAC,KAAK,GAAG,IAAI,GAAG,CAAC,CAAC,CAAC,KAAK,CAAC,CAAA;AACxD,CAAC;AAED,MAAM,CAAC,OAAO,MAAO,SAAQ,sBAAsB;IAAnD;;QAKY,kBAAa,GAEnB,EAAE,CAAA;
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{"version":3,"file":"GtfAdapter.js","sourceRoot":"","sources":["../../src/GtfAdapter/GtfAdapter.ts"],"names":[],"mappings":"AAAA,OAAO,EACL,sBAAsB,GAEvB,MAAM,yCAAyC,CAAA;AAEhD,OAAO,EAAE,YAAY,EAAE,MAAM,uBAAuB,CAAA;AACpD,OAAO,EAAE,gBAAgB,EAAE,MAAM,yBAAyB,CAAA;AAC1D,OAAO,YAAY,MAAM,2BAA2B,CAAA;AACpD,OAAO,aAA0B,MAAM,kCAAkC,CAAA;AACzE,OAAO,EAAE,KAAK,EAAE,MAAM,uBAAuB,CAAA;AAC7C,OAAO,GAAG,MAAM,WAAW,CAAA;AAC3B,OAAO,EAAc,WAAW,EAAE,MAAM,SAAS,CAAA;AACjD,SAAS,MAAM,CAAC,GAAW;IACzB,OAAO,GAAG,CAAC,CAAC,CAAC,KAAK,EAAE,IAAI,GAAG,CAAC,CAAC,CAAC,KAAK,GAAG,IAAI,GAAG,CAAC,CAAC,CAAC,KAAK,CAAC,CAAA;AACxD,CAAC;AAED,MAAM,CAAC,OAAO,MAAO,SAAQ,sBAAsB;IAAnD;;QAKY,kBAAa,GAEnB,EAAE,CAAA;IAuGR,CAAC;IArGS,KAAK,CAAC,SAAS,CAAC,OAAoB,EAAE;QAC5C,MAAM,MAAM,GAAG,IAAI,CAAC,OAAO,CAAC,aAAa,CAAC,CAAA;QAC1C,MAAM,MAAM,GAAG,MAAM,YAAY,CAAC,MAAM,EAAE,IAAI,CAAC,aAAa,CAAC,CAAC,QAAQ,CAAC,IAAI,CAAC,CAAA;QAE5E,MAAM,GAAG,GAAG,MAAM,CAAC,MAAM,CAAC,CAAC,CAAC,CAAC,MAAM,KAAK,CAAC,MAAM,CAAC,CAAC,CAAC,CAAC,MAAM,CAAA;QACzD,2CAA2C;QAC3C,IAAI,GAAG,CAAC,MAAM,GAAG,SAAW,EAAE;YAC5B,MAAM,IAAI,KAAK,CAAC,4CAA4C,CAAC,CAAA;SAC9D;QACD,MAAM,IAAI,GAAG,IAAI,WAAW,CAAC,MAAM,EAAE,EAAE,KAAK,EAAE,IAAI,EAAE,CAAC,CAAC,MAAM,CAAC,GAAG,CAAC,CAAA;QAEjE,MAAM,KAAK,GAAG,IAAI;aACf,KAAK,CAAC,YAAY,CAAC;aACnB,MAAM,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,CAAC,IAAI,CAAC,CAAC,CAAC,UAAU,CAAC,GAAG,CAAC,CAAC,CAAA;QACzC,MAAM,KAAK,GAAG,EAAiC,CAAA;QAC/C,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,KAAK,CAAC,MAAM,EAAE,CAAC,EAAE,EAAE;YACrC,MAAM,IAAI,GAAG,KAAK,CAAC,CAAC,CAAC,CAAA;YACrB,IAAI,IAAI,CAAC,UAAU,CAAC,GAAG,CAAC,EAAE;gBACxB,SAAQ;aACT;YACD,MAAM,GAAG,GAAG,IAAI,CAAC,OAAO,CAAC,IAAI,CAAC,CAAA;YAC9B,MAAM,OAAO,GAAG,IAAI,CAAC,KAAK,CAAC,CAAC,EAAE,GAAG,CAAC,CAAA;YAClC,IAAI,CAAC,KAAK,CAAC,OAAO,CAAC,EAAE;gBACnB,KAAK,CAAC,OAAO,CAAC,GAAG,EAAE,CAAA;aACpB;YACD,KAAK,CAAC,OAAO,CAAC,CAAC,IAAI,CAAC,KAAK,CAAC,CAAC,CAAC,CAAC,CAAA;SAC9B;QAED,OAAO,EAAE,KAAK,EAAE,CAAA;IAClB,CAAC;IAEO,KAAK,CAAC,QAAQ,CAAC,OAAoB,EAAE;QAC3C,IAAI,CAAC,IAAI,CAAC,WAAW,EAAE;YACrB,IAAI,CAAC,WAAW,GAAG,IAAI,CAAC,SAAS,CAAC,IAAI,CAAC,CAAC,KAAK,CAAC,CAAC,CAAC,EAAE;gBAChD,IAAI,CAAC,WAAW,GAAG,SAAS,CAAA;gBAC5B,MAAM,CAAC,CAAA;YACT,CAAC,CAAC,CAAA;SACH;QAED,OAAO,IAAI,CAAC,WAAW,CAAA;IACzB,CAAC;IAEM,KAAK,CAAC,WAAW,CAAC,OAAoB,EAAE;QAC7C,MAAM,EAAE,KAAK,EAAE,GAAG,MAAM,IAAI,CAAC,QAAQ,CAAC,IAAI,CAAC,CAAA;QAC3C,OAAO,MAAM,CAAC,IAAI,CAAC,KAAK,CAAC,CAAA;IAC3B,CAAC;IAEO,KAAK,CAAC,6BAA6B,CAAC,OAAe;QACzD,MAAM,EAAE,KAAK,EAAE,GAAG,MAAM,IAAI,CAAC,QAAQ,EAAE,CAAA;QACvC,MAAM,KAAK,GAAG,KAAK,CAAC,OAAO,CAAC,CAAA;QAC5B,IAAI,CAAC,KAAK,EAAE;YACV,OAAO,SAAS,CAAA;SACjB;QACD,MAAM,IAAI,GAAG,GAAG,CAAC,eAAe,CAAC,KAAK,CAAC,IAAI,CAAC,IAAI,CAAC,EAAE;YACjD,aAAa,EAAE,IAAI;YACnB,aAAa,EAAE,KAAK;YACpB,eAAe,EAAE,KAAK;YACtB,cAAc,EAAE,KAAK;SACtB,CAAmB,CAAA;QAEpB,MAAM,YAAY,GAAG,IAAI,YAAY,EAAE,CAAA;QACvC,MAAM,GAAG,GAAG,IAAI,CAAC,IAAI,EAAE,CAAC,GAAG,CACzB,CAAC,CAAC,EAAE,CAAC,EAAE,EAAE,CACP,IAAI,aAAa,CAAC;YAChB,IAAI,EAAE,WAAW,CAAC,CAAC,CAAC;YACpB,EAAE,EAAE,GAAG,IAAI,CAAC,EAAE,IAAI,OAAO,IAAI,CAAC,EAAE;SACjC,CAAC,CACL,CAAA;QAED,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,GAAG,CAAC,MAAM,EAAE,CAAC,EAAE,EAAE;YACnC,MAAM,GAAG,GAAG,GAAG,CAAC,CAAC,CAAC,CAAA;YAClB,YAAY,CAAC,MAAM,CAAC,CAAC,GAAG,CAAC,GAAG,CAAC,OAAO,CAAC,EAAE,GAAG,CAAC,GAAG,CAAC,KAAK,CAAC,CAAC,EAAE,GAAG,CAAC,CAAA;SAC7D;QACD,OAAO,YAAY,CAAA;IACrB,CAAC;IAEO,KAAK,CAAC,uBAAuB,CAAC,OAAe;QACnD,IAAI,CAAC,IAAI,CAAC,aAAa,CAAC,OAAO,CAAC,EAAE;YAChC,IAAI,CAAC,aAAa,CAAC,OAAO,CAAC,GAAG,IAAI,CAAC,6BAA6B,CAC9D,OAAO,CACR,CAAC,KAAK,CAAC,CAAC,CAAC,EAAE;gBACV,IAAI,CAAC,aAAa,CAAC,OAAO,CAAC,GAAG,SAAS,CAAA;gBACvC,MAAM,CAAC,CAAA;YACT,CAAC,CAAC,CAAA;SACH;QACD,OAAO,IAAI,CAAC,aAAa,CAAC,OAAO,CAAC,CAAA;IACpC,CAAC;IAEM,WAAW,CAAC,KAAuB,EAAE,OAAoB,EAAE;QAChE,OAAO,gBAAgB,CAAU,KAAK,EAAC,QAAQ,EAAC,EAAE;YAChD,IAAI;gBACF,MAAM,EAAE,KAAK,EAAE,GAAG,EAAE,OAAO,EAAE,GAAG,KAAK,CAAA;gBACrC,MAAM,YAAY,GAAG,MAAM,IAAI,CAAC,uBAAuB,CAAC,OAAO,CAAC,CAAA;gBAChE,YAAY,aAAZ,YAAY,uBAAZ,YAAY,CAAE,MAAM,CAAC,CAAC,KAAK,EAAE,GAAG,CAAC,EAAE,OAAO,CAAC,CAAC,CAAC,EAAE,CAAC,QAAQ,CAAC,IAAI,CAAC,CAAC,CAAC,CAAC,CAAA;gBACjE,QAAQ,CAAC,QAAQ,EAAE,CAAA;aACpB;YAAC,OAAO,CAAC,EAAE;gBACV,QAAQ,CAAC,KAAK,CAAC,CAAC,CAAC,CAAA;aAClB;QACH,CAAC,EAAE,IAAI,CAAC,MAAM,CAAC,CAAA;IACjB,CAAC;IACM,aAAa,EAAC,gBAAgB,IAAG,CAAC;CAC1C"}
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package/package.json
CHANGED
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{
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"name": "@jbrowse/plugin-gtf",
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"version": "2.1.
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"version": "2.1.6",
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"description": "JBrowse 2 gtf feature adapter",
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"keywords": [
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"jbrowse",
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"distModule": "esm/index.js",
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"srcModule": "src/index.ts",
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"module": "esm/index.js",
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"gitHead": "
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"gitHead": "df810d2a4f057adcd8f5345d54972508fba007a7"
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}
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}
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const data = new TextDecoder('utf8', { fatal: true }).decode(buf)
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const lines = data
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.split(/\n|\r\n|\r/)
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.filter(f => !!f && !f.startsWith('#'))
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const feats = {} as { [key: string]: string[] }
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const line = lines[i]
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