@jbrowse/plugin-gtf 1.7.9 → 2.0.0

package/dist/GtfAdapter/GtfAdapter.test.js

@@ -1,127 +0,0 @@
-"use strict";
-
-var _interopRequireDefault = require("@babel/runtime/helpers/interopRequireDefault");
-
-var _regenerator = _interopRequireDefault(require("@babel/runtime/regenerator"));
-
-var _asyncToGenerator2 = _interopRequireDefault(require("@babel/runtime/helpers/asyncToGenerator"));
-
-var _operators = require("rxjs/operators");
-
-var _configSchema = _interopRequireDefault(require("./configSchema"));
-
-var _GtfAdapter = _interopRequireDefault(require("./GtfAdapter"));
-
-var _webEncoding = require("web-encoding");
-
-window.TextDecoder = _webEncoding.TextDecoder;
-describe('adapter can fetch features from volvox.sorted.gtf', function () {
-  var adapter;
-  beforeEach(function () {
-    adapter = new _GtfAdapter.default(_configSchema.default.create({
-      gtfLocation: {
-        localPath: require.resolve('../test_data/volvox.sorted.gtf')
-      }
-    }));
-  });
-  it('test getfeatures on gtf plain text adapter', /*#__PURE__*/(0, _asyncToGenerator2.default)( /*#__PURE__*/_regenerator.default.mark(function _callee() {
-    var features, featuresArray, featuresJsonArray;
-    return _regenerator.default.wrap(function _callee$(_context) {
-      while (1) {
-        switch (_context.prev = _context.next) {
-          case 0:
-            features = adapter.getFeatures({
-              refName: 'ctgA',
-              start: 0,
-              end: 100000
-            });
-            _context.t0 = expect;
-            _context.next = 4;
-            return adapter.hasDataForRefName('ctgA');
-
-          case 4:
-            _context.t1 = _context.sent;
-            (0, _context.t0)(_context.t1).toBe(true);
-            _context.t2 = expect;
-            _context.next = 9;
-            return adapter.hasDataForRefName('ctgB');
-
-          case 9:
-            _context.t3 = _context.sent;
-            (0, _context.t2)(_context.t3).toBe(false);
-            _context.next = 13;
-            return features.pipe((0, _operators.toArray)()).toPromise();
-
-          case 13:
-            featuresArray = _context.sent;
-            // There are only 4 features in ctgB
-            expect(featuresArray.length).toBe(6);
-            featuresJsonArray = featuresArray.map(function (f) {
-              return f.toJSON();
-            });
-            expect(featuresJsonArray).toMatchSnapshot();
-
-          case 17:
-          case "end":
-            return _context.stop();
-        }
-      }
-    }, _callee);
-  })));
-});
-test('can instantiate new GtfAdapter and check for demo data', /*#__PURE__*/(0, _asyncToGenerator2.default)( /*#__PURE__*/_regenerator.default.mark(function _callee2() {
-  var demoAdapter, features, featuresArray, featuresJsonArray;
-  return _regenerator.default.wrap(function _callee2$(_context2) {
-    while (1) {
-      switch (_context2.prev = _context2.next) {
-        case 0:
-          demoAdapter = new _GtfAdapter.default(_configSchema.default.create({
-            gtfLocation: {
-              localPath: require.resolve('../test_data/demo.gtf')
-            }
-          }));
-          _context2.t0 = expect;
-          _context2.next = 4;
-          return demoAdapter.hasDataForRefName('GeneScaffold_1');
-
-        case 4:
-          _context2.t1 = _context2.sent;
-          (0, _context2.t0)(_context2.t1).toBe(true);
-          _context2.t2 = expect;
-          _context2.next = 9;
-          return demoAdapter.hasDataForRefName('GeneScaffold_10');
-
-        case 9:
-          _context2.t3 = _context2.sent;
-          (0, _context2.t2)(_context2.t3).toBe(true);
-          _context2.t4 = expect;
-          _context2.next = 14;
-          return demoAdapter.hasDataForRefName('GeneScaffold_11');
-
-        case 14:
-          _context2.t5 = _context2.sent;
-          (0, _context2.t4)(_context2.t5).toBe(false);
-          features = demoAdapter.getFeatures({
-            refName: 'GeneScaffold_1',
-            start: 0,
-            end: 1100000
-          });
-          _context2.next = 19;
-          return features.pipe((0, _operators.toArray)()).toPromise();
-
-        case 19:
-          featuresArray = _context2.sent;
-          featuresJsonArray = featuresArray.map(function (f) {
-            return f.toJSON();
-          }); // ENSVPAT00000000407
-
-          expect(featuresArray.length).toEqual(1);
-          expect(featuresJsonArray).toMatchSnapshot();
-
-        case 23:
-        case "end":
-          return _context2.stop();
-      }
-    }
-  }, _callee2);
-})));

package/dist/declare.d.js

@@ -1 +0,0 @@
-"use strict";