@jbrowse/plugin-grid-bookmark 3.7.0 → 4.0.1

package/dist/GridBookmarkWidget/components/dialogs/ImportBookmarksDialog.js

@@ -1,115 +0,0 @@
-"use strict";
-var __importDefault = (this && this.__importDefault) || function (mod) {
-    return (mod && mod.__esModule) ? mod : { "default": mod };
-};
-Object.defineProperty(exports, "__esModule", { value: true });
-const jsx_runtime_1 = require("react/jsx-runtime");
-const react_1 = require("react");
-const ui_1 = require("@jbrowse/core/ui");
-const util_1 = require("@jbrowse/core/util");
-const io_1 = require("@jbrowse/core/util/io");
-const types_1 = require("@jbrowse/core/util/types");
-const ExpandMore_1 = __importDefault(require("@mui/icons-material/ExpandMore"));
-const Publish_1 = __importDefault(require("@mui/icons-material/Publish"));
-const material_1 = require("@mui/material");
-const mobx_react_1 = require("mobx-react");
-const mui_1 = require("tss-react/mui");
-const sessionSharing_1 = require("../../sessionSharing");
-const utils_1 = require("../../utils");
-const useStyles = (0, mui_1.makeStyles)()(theme => ({
-    expandIcon: {
-        color: theme.palette.tertiary.contrastText || '#fff',
-    },
-    minWidth: {
-        minWidth: 500,
-    },
-}));
-async function getBookmarksFromShareLink(shareLink, shareURL) {
-    const defaultURL = 'https://share.jbrowse.org/api/v1/';
-    const urlParams = new URL(shareLink);
-    const sessionQueryParam = urlParams.searchParams.get('bookmarks');
-    const password = urlParams.searchParams.get('password');
-    const decryptedSession = await (0, sessionSharing_1.readSessionFromDynamo)(`${shareURL !== null && shareURL !== void 0 ? shareURL : defaultURL}load`, sessionQueryParam || '', password || '');
-    const sharedSession = JSON.parse(await (0, utils_1.fromUrlSafeB64)(decryptedSession));
-    return sharedSession.sharedBookmarks;
-}
-function guessFileType(header) {
-    return header.startsWith('chrom') && header.includes('assembly_name')
-        ? 'TSV'
-        : 'BED';
-}
-async function getBookmarksFromTSVFile(lines) {
-    if (lines[0].startsWith('chrom')) {
-        lines = lines.slice(1);
-    }
-    return lines
-        .filter(f => !f.startsWith('#'))
-        .map(line => {
-        const [refName, start, end, label, assemblyName] = line.split('\t');
-        return {
-            assemblyName: assemblyName,
-            refName: refName,
-            start: +start,
-            end: +end,
-            label: label === '.' ? undefined : label,
-        };
-    });
-}
-async function getBookmarksFromBEDFile(lines, selectedAsm) {
-    return lines
-        .filter(f => !f.startsWith('#'))
-        .map(line => {
-        const [refName, start, end, label] = line.split('\t');
-        return {
-            assemblyName: selectedAsm,
-            refName: refName,
-            start: +start,
-            end: +end,
-            label: label === '.' ? undefined : label,
-        };
-    });
-}
-const ImportBookmarksDialog = (0, mobx_react_1.observer)(function ({ onClose, model, }) {
-    const { classes } = useStyles();
-    const [location, setLocation] = (0, react_1.useState)();
-    const [error, setError] = (0, react_1.useState)();
-    const [shareLink, setShareLink] = (0, react_1.useState)('');
-    const session = (0, util_1.getSession)(model);
-    const { assemblyNames } = session;
-    const [selectedAsm, setSelectedAsm] = (0, react_1.useState)(assemblyNames[0]);
-    const [expanded, setExpanded] = (0, react_1.useState)('shareLinkAccordion');
-    return ((0, jsx_runtime_1.jsxs)(ui_1.Dialog, { open: true, onClose: onClose, maxWidth: "xl", title: "Import bookmarks", children: [(0, jsx_runtime_1.jsxs)(material_1.DialogContent, { className: classes.minWidth, children: [(0, jsx_runtime_1.jsxs)(material_1.Accordion, { expanded: expanded === 'shareLinkAccordion', onChange: () => {
-                            setExpanded('shareLinkAccordion');
-                        }, children: [(0, jsx_runtime_1.jsx)(material_1.AccordionSummary, { expandIcon: (0, jsx_runtime_1.jsx)(ExpandMore_1.default, { className: classes.expandIcon }), children: (0, jsx_runtime_1.jsx)(material_1.Typography, { style: { display: 'flex', alignItems: 'center', gap: '5px' }, children: "Import from share link" }) }), (0, jsx_runtime_1.jsxs)(material_1.AccordionDetails, { children: [(0, jsx_runtime_1.jsx)(material_1.Typography, { children: "Paste a bookmark share link generated by the 'Share' button from the bookmarks widget" }), (0, jsx_runtime_1.jsx)(material_1.TextField, { label: "Enter Share URL", variant: "outlined", fullWidth: true, value: shareLink, onChange: e => {
-                                            setShareLink(e.target.value);
-                                        } })] })] }), (0, jsx_runtime_1.jsxs)(material_1.Accordion, { expanded: expanded === 'fileAccordion', onChange: () => {
-                            setExpanded('fileAccordion');
-                        }, children: [(0, jsx_runtime_1.jsx)(material_1.AccordionSummary, { expandIcon: (0, jsx_runtime_1.jsx)(ExpandMore_1.default, { className: classes.expandIcon }), children: (0, jsx_runtime_1.jsx)(material_1.Typography, { children: "Import from file" }) }), (0, jsx_runtime_1.jsxs)(material_1.AccordionDetails, { children: [(0, jsx_runtime_1.jsx)(ui_1.FileSelector, { location: location, setLocation: setLocation, name: "File", description: `Choose a BED or TSV format file to import. Required TSV column headers are "chrom, start, end, label, assembly_name".` }), (0, jsx_runtime_1.jsx)(ui_1.AssemblySelector, { onChange: val => {
-                                            setSelectedAsm(val);
-                                        }, helperText: 'Select the assembly for BED file.', session: session, selected: selectedAsm })] })] }), error ? (0, jsx_runtime_1.jsx)(ui_1.ErrorMessage, { error: error }) : null] }), (0, jsx_runtime_1.jsxs)(material_1.DialogActions, { children: [(0, jsx_runtime_1.jsx)(material_1.Button, { variant: "contained", color: "secondary", onClick: onClose, children: "Cancel" }), (0, jsx_runtime_1.jsx)(material_1.Button, { "data-testid": "dialogImport", variant: "contained", color: "primary", disabled: !location && !shareLink, startIcon: (0, jsx_runtime_1.jsx)(Publish_1.default, {}), onClick: async () => {
-                            try {
-                                if (expanded === 'fileAccordion' && location) {
-                                    const data = await (0, io_1.openLocation)(location).readFile('utf8');
-                                    const lines = data.split(/\n|\r\n|\r/).filter(f => !!f.trim());
-                                    const fileType = guessFileType(lines[0]);
-                                    if (fileType === 'BED') {
-                                        model.importBookmarks(await getBookmarksFromBEDFile(lines, selectedAsm));
-                                    }
-                                    else {
-                                        model.importBookmarks(await getBookmarksFromTSVFile(lines));
-                                    }
-                                }
-                                else if (expanded === 'shareLinkAccordion' &&
-                                    shareLink &&
-                                    (0, types_1.isSessionWithShareURL)(session)) {
-                                    model.importBookmarks(await getBookmarksFromShareLink(shareLink, session.shareURL));
-                                }
-                                onClose();
-                            }
-                            catch (e) {
-                                console.error(e);
-                                setError(e);
-                            }
-                        }, children: "Import" })] })] }));
-});
-exports.default = ImportBookmarksDialog;

package/dist/GridBookmarkWidget/components/dialogs/ShareBookmarksDialog.d.ts

@@ -1,6 +0,0 @@
-import type { GridBookmarkModel } from '../../model';
-declare const ShareBookmarksDialog: ({ onClose, model, }: {
-    onClose: () => void;
-    model: GridBookmarkModel;
-}) => import("react/jsx-runtime").JSX.Element;
-export default ShareBookmarksDialog;

package/dist/GridBookmarkWidget/components/dialogs/ShareBookmarksDialog.js

@@ -1,77 +0,0 @@
-"use strict";
-var __importDefault = (this && this.__importDefault) || function (mod) {
-    return (mod && mod.__esModule) ? mod : { "default": mod };
-};
-Object.defineProperty(exports, "__esModule", { value: true });
-const jsx_runtime_1 = require("react/jsx-runtime");
-const react_1 = require("react");
-const ui_1 = require("@jbrowse/core/ui");
-const util_1 = require("@jbrowse/core/util");
-const ContentCopy_1 = __importDefault(require("@mui/icons-material/ContentCopy"));
-const material_1 = require("@mui/material");
-const copy_to_clipboard_1 = __importDefault(require("copy-to-clipboard"));
-const mobx_react_1 = require("mobx-react");
-const mobx_state_tree_1 = require("mobx-state-tree");
-const mui_1 = require("tss-react/mui");
-const sessionSharing_1 = require("../../sessionSharing");
-const useStyles = (0, mui_1.makeStyles)()(() => ({
-    flexItem: {
-        margin: 5,
-    },
-    content: {
-        display: 'flex',
-        flexFlow: 'column',
-        gap: '5px',
-    },
-}));
-const ShareBookmarksDialog = (0, mobx_react_1.observer)(function ({ onClose, model, }) {
-    const { classes } = useStyles();
-    const [url, setUrl] = (0, react_1.useState)('');
-    const [error, setError] = (0, react_1.useState)();
-    const [loading, setLoading] = (0, react_1.useState)(true);
-    const session = (0, util_1.getSession)(model);
-    const { selectedBookmarks } = model;
-    const shareAll = selectedBookmarks.length === 0;
-    const bookmarksToShare = selectedBookmarks.length === 0
-        ? model.allBookmarksModel
-        : model.sharedBookmarksModel;
-    (0, react_1.useEffect)(() => {
-        ;
-        (async () => {
-            try {
-                if (!(0, util_1.isSessionWithShareURL)(session)) {
-                    throw new Error('No shareURL configured');
-                }
-                setLoading(true);
-                const snap = (0, mobx_state_tree_1.getSnapshot)(bookmarksToShare);
-                const locationUrl = new URL(window.location.href);
-                const result = await (0, sessionSharing_1.shareSessionToDynamo)(snap, session.shareURL, locationUrl.href);
-                const params = new URLSearchParams(locationUrl.search);
-                params.set('bookmarks', `share-${result.json.sessionId}`);
-                params.set('password', result.password);
-                locationUrl.search = params.toString();
-                setUrl(locationUrl.href);
-                setLoading(false);
-            }
-            catch (e) {
-                setError(e);
-            }
-            finally {
-                setLoading(false);
-            }
-        })();
-    }, [bookmarksToShare, session]);
-    return ((0, jsx_runtime_1.jsxs)(ui_1.Dialog, { open: true, onClose: onClose, title: "Share bookmarks", children: [(0, jsx_runtime_1.jsxs)(material_1.DialogContent, { className: classes.content, children: [(0, jsx_runtime_1.jsx)(material_1.Alert, { severity: "info", children: shareAll ? ((0, jsx_runtime_1.jsxs)(jsx_runtime_1.Fragment, { children: [(0, jsx_runtime_1.jsx)("span", { children: "All bookmarks will be shared." }), (0, jsx_runtime_1.jsx)("br", {}), (0, jsx_runtime_1.jsx)("span", { children: "Use the checkboxes to select individual bookmarks to share." })] })) : ('Only selected bookmarks will be shared.') }), (0, jsx_runtime_1.jsx)(material_1.DialogContentText, { children: "Copy the URL below to share your bookmarks." }), error ? ((0, jsx_runtime_1.jsx)(ui_1.ErrorMessage, { error: error })) : loading ? ((0, jsx_runtime_1.jsx)(material_1.Typography, { children: "Generating short URL..." })) : ((0, jsx_runtime_1.jsx)(material_1.TextField, { label: "URL", value: url, slotProps: {
-                            input: {
-                                readOnly: true,
-                            },
-                        }, variant: "filled", fullWidth: true, onClick: event => {
-                            const target = event.target;
-                            target.select();
-                        } })), (0, jsx_runtime_1.jsx)(material_1.DialogContentText, { children: "The URL should be pasted into the \"Import from share link\" field in the \"Import\" form found in the \"Bookmarked regions\" drawer." })] }), (0, jsx_runtime_1.jsx)(material_1.DialogActions, { children: (0, jsx_runtime_1.jsx)(material_1.Button, { className: classes.flexItem, "data-testid": "dialogShare", variant: "contained", color: "primary", disabled: loading, startIcon: (0, jsx_runtime_1.jsx)(ContentCopy_1.default, {}), onClick: async () => {
-                        (0, copy_to_clipboard_1.default)(url);
-                        session.notify('Copied to clipboard', 'success');
-                        onClose();
-                    }, children: "Copy share link" }) })] }));
-});
-exports.default = ShareBookmarksDialog;

package/dist/GridBookmarkWidget/index.d.ts

@@ -1,2 +0,0 @@
-import type PluginManager from '@jbrowse/core/PluginManager';
-export default function GridBookmarkWidgetF(pluginManager: PluginManager): void;

package/dist/GridBookmarkWidget/index.js

@@ -1,57 +0,0 @@
-"use strict";
-var __createBinding = (this && this.__createBinding) || (Object.create ? (function(o, m, k, k2) {
-    if (k2 === undefined) k2 = k;
-    var desc = Object.getOwnPropertyDescriptor(m, k);
-    if (!desc || ("get" in desc ? !m.__esModule : desc.writable || desc.configurable)) {
-      desc = { enumerable: true, get: function() { return m[k]; } };
-    }
-    Object.defineProperty(o, k2, desc);
-}) : (function(o, m, k, k2) {
-    if (k2 === undefined) k2 = k;
-    o[k2] = m[k];
-}));
-var __setModuleDefault = (this && this.__setModuleDefault) || (Object.create ? (function(o, v) {
-    Object.defineProperty(o, "default", { enumerable: true, value: v });
-}) : function(o, v) {
-    o["default"] = v;
-});
-var __importStar = (this && this.__importStar) || (function () {
-    var ownKeys = function(o) {
-        ownKeys = Object.getOwnPropertyNames || function (o) {
-            var ar = [];
-            for (var k in o) if (Object.prototype.hasOwnProperty.call(o, k)) ar[ar.length] = k;
-            return ar;
-        };
-        return ownKeys(o);
-    };
-    return function (mod) {
-        if (mod && mod.__esModule) return mod;
-        var result = {};
-        if (mod != null) for (var k = ownKeys(mod), i = 0; i < k.length; i++) if (k[i] !== "default") __createBinding(result, mod, k[i]);
-        __setModuleDefault(result, mod);
-        return result;
-    };
-})();
-var __importDefault = (this && this.__importDefault) || function (mod) {
-    return (mod && mod.__esModule) ? mod : { "default": mod };
-};
-Object.defineProperty(exports, "__esModule", { value: true });
-exports.default = GridBookmarkWidgetF;
-const react_1 = require("react");
-const configuration_1 = require("@jbrowse/core/configuration");
-const pluggableElementTypes_1 = require("@jbrowse/core/pluggableElementTypes");
-const Highlight_1 = __importDefault(require("./components/Highlight"));
-const model_1 = __importDefault(require("./model"));
-const configSchema = (0, configuration_1.ConfigurationSchema)('GridBookmarkWidget', {});
-function GridBookmarkWidgetF(pluginManager) {
-    pluginManager.addWidgetType(() => {
-        return new pluggableElementTypes_1.WidgetType({
-            name: 'GridBookmarkWidget',
-            heading: 'Bookmarked regions',
-            configSchema,
-            stateModel: (0, model_1.default)(pluginManager),
-            ReactComponent: (0, react_1.lazy)(() => Promise.resolve().then(() => __importStar(require('./components/GridBookmarkWidget')))),
-        });
-    });
-    (0, Highlight_1.default)(pluginManager);
-}

package/dist/GridBookmarkWidget/model.d.ts

@@ -1,228 +0,0 @@
-import type PluginManager from '@jbrowse/core/PluginManager';
-import type { Region } from '@jbrowse/core/util/types';
-import type { LinearGenomeViewModel } from '@jbrowse/plugin-linear-genome-view';
-import type { IMSTArray, Instance, SnapshotIn } from 'mobx-state-tree';
-declare const LabeledRegionModel: import("mobx-state-tree").IModelType<{
-    refName: import("mobx-state-tree").ISimpleType<string>;
-    start: import("mobx-state-tree").ISimpleType<number>;
-    end: import("mobx-state-tree").ISimpleType<number>;
-    reversed: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<boolean>, [undefined]>;
-} & {
-    assemblyName: import("mobx-state-tree").ISimpleType<string>;
-} & {
-    label: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
-    highlight: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
-}, {
-    setRefName(newRefName: string): void;
-} & {
-    setLabel(label: string): void;
-    setHighlight(color: string): void;
-}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>;
-export interface IExtendedLGV extends LinearGenomeViewModel {
-    bookmarkHighlightsVisible: boolean;
-    bookmarkLabelsVisible: boolean;
-    setBookmarkHighlightsVisible: (arg: boolean) => void;
-    setBookmarkLabelsVisible: (arg: boolean) => void;
-}
-export interface ILabeledRegionModel extends SnapshotIn<typeof LabeledRegionModel> {
-    refName: string;
-    start: number;
-    end: number;
-    reversed: boolean;
-    highlight: string;
-    assemblyName: string;
-    label: string;
-    setRefName: (newRefName: string) => void;
-    setLabel: (label: string) => void;
-    setHighlight: (color: string) => void;
-}
-export interface IExtendedLabeledRegionModel extends ILabeledRegionModel {
-    id: number;
-    correspondingObj: ILabeledRegionModel;
-}
-export default function f(_pluginManager: PluginManager): import("mobx-state-tree").IModelType<{
-    id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
-    type: import("mobx-state-tree").ISimpleType<"GridBookmarkWidget">;
-    bookmarks: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").IArrayType<import("mobx-state-tree").IModelType<{
-        refName: import("mobx-state-tree").ISimpleType<string>;
-        start: import("mobx-state-tree").ISimpleType<number>;
-        end: import("mobx-state-tree").ISimpleType<number>;
-        reversed: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<boolean>, [undefined]>;
-    } & {
-        assemblyName: import("mobx-state-tree").ISimpleType<string>;
-    } & {
-        label: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
-        highlight: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
-    }, {
-        setRefName(newRefName: string): void;
-    } & {
-        setLabel(label: string): void;
-        setHighlight(color: string): void;
-    }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>, [undefined]>;
-}, {
-    selectedBookmarks: IExtendedLabeledRegionModel[];
-    selectedAssembliesPre: string[] | undefined;
-} & {
-    readonly bookmarkAssemblies: string[];
-    readonly validAssemblies: Set<string>;
-    readonly areBookmarksHighlightedOnAllOpenViews: boolean;
-    readonly areBookmarksHighlightLabelsOnAllOpenViews: boolean;
-} & {
-    readonly bookmarksWithValidAssemblies: ({
-        refName: string;
-        start: number;
-        end: number;
-        reversed: boolean;
-        assemblyName: string;
-        label: string;
-        highlight: string;
-    } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
-        setRefName(newRefName: string): void;
-    } & {
-        setLabel(label: string): void;
-        setHighlight(color: string): void;
-    } & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
-        refName: import("mobx-state-tree").ISimpleType<string>;
-        start: import("mobx-state-tree").ISimpleType<number>;
-        end: import("mobx-state-tree").ISimpleType<number>;
-        reversed: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<boolean>, [undefined]>;
-    } & {
-        assemblyName: import("mobx-state-tree").ISimpleType<string>;
-    } & {
-        label: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
-        highlight: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
-    }, {
-        setRefName(newRefName: string): void;
-    } & {
-        setLabel(label: string): void;
-        setHighlight(color: string): void;
-    }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>)[];
-} & {
-    readonly sharedBookmarksModel: {
-        sharedBookmarks: (IMSTArray<import("mobx-state-tree").IModelType<{
-            refName: import("mobx-state-tree").ISimpleType<string>;
-            start: import("mobx-state-tree").ISimpleType<number>;
-            end: import("mobx-state-tree").ISimpleType<number>;
-            reversed: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<boolean>, [undefined]>;
-        } & {
-            assemblyName: import("mobx-state-tree").ISimpleType<string>;
-        } & {
-            label: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
-            highlight: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
-        }, {
-            setRefName(newRefName: string): void;
-        } & {
-            setLabel(label: string): void;
-            setHighlight(color: string): void;
-        }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>> & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IMaybe<import("mobx-state-tree").IArrayType<import("mobx-state-tree").IModelType<{
-            refName: import("mobx-state-tree").ISimpleType<string>;
-            start: import("mobx-state-tree").ISimpleType<number>;
-            end: import("mobx-state-tree").ISimpleType<number>;
-            reversed: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<boolean>, [undefined]>;
-        } & {
-            assemblyName: import("mobx-state-tree").ISimpleType<string>;
-        } & {
-            label: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
-            highlight: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
-        }, {
-            setRefName(newRefName: string): void;
-        } & {
-            setLabel(label: string): void;
-            setHighlight(color: string): void;
-        }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>>>) | undefined;
-    } & import("mobx-state-tree/dist/internal").NonEmptyObject & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
-        sharedBookmarks: import("mobx-state-tree").IMaybe<import("mobx-state-tree").IArrayType<import("mobx-state-tree").IModelType<{
-            refName: import("mobx-state-tree").ISimpleType<string>;
-            start: import("mobx-state-tree").ISimpleType<number>;
-            end: import("mobx-state-tree").ISimpleType<number>;
-            reversed: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<boolean>, [undefined]>;
-        } & {
-            assemblyName: import("mobx-state-tree").ISimpleType<string>;
-        } & {
-            label: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
-            highlight: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
-        }, {
-            setRefName(newRefName: string): void;
-        } & {
-            setLabel(label: string): void;
-            setHighlight(color: string): void;
-        }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>>;
-    }, {}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
-    readonly allBookmarksModel: {
-        sharedBookmarks: (IMSTArray<import("mobx-state-tree").IModelType<{
-            refName: import("mobx-state-tree").ISimpleType<string>;
-            start: import("mobx-state-tree").ISimpleType<number>;
-            end: import("mobx-state-tree").ISimpleType<number>;
-            reversed: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<boolean>, [undefined]>;
-        } & {
-            assemblyName: import("mobx-state-tree").ISimpleType<string>;
-        } & {
-            label: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
-            highlight: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
-        }, {
-            setRefName(newRefName: string): void;
-        } & {
-            setLabel(label: string): void;
-            setHighlight(color: string): void;
-        }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>> & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IMaybe<import("mobx-state-tree").IArrayType<import("mobx-state-tree").IModelType<{
-            refName: import("mobx-state-tree").ISimpleType<string>;
-            start: import("mobx-state-tree").ISimpleType<number>;
-            end: import("mobx-state-tree").ISimpleType<number>;
-            reversed: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<boolean>, [undefined]>;
-        } & {
-            assemblyName: import("mobx-state-tree").ISimpleType<string>;
-        } & {
-            label: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
-            highlight: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
-        }, {
-            setRefName(newRefName: string): void;
-        } & {
-            setLabel(label: string): void;
-            setHighlight(color: string): void;
-        }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>>>) | undefined;
-    } & import("mobx-state-tree/dist/internal").NonEmptyObject & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
-        sharedBookmarks: import("mobx-state-tree").IMaybe<import("mobx-state-tree").IArrayType<import("mobx-state-tree").IModelType<{
-            refName: import("mobx-state-tree").ISimpleType<string>;
-            start: import("mobx-state-tree").ISimpleType<number>;
-            end: import("mobx-state-tree").ISimpleType<number>;
-            reversed: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<boolean>, [undefined]>;
-        } & {
-            assemblyName: import("mobx-state-tree").ISimpleType<string>;
-        } & {
-            label: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
-            highlight: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
-        }, {
-            setRefName(newRefName: string): void;
-        } & {
-            setLabel(label: string): void;
-            setHighlight(color: string): void;
-        }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>>;
-    }, {}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
-} & {
-    setSelectedAssemblies(assemblies?: string[]): void;
-} & {
-    readonly selectedAssemblies: string[];
-} & {
-    importBookmarks(regions: Region[]): void;
-    addBookmark(region: Region): void;
-    removeBookmark(index: number): void;
-    updateBookmarkLabel(bookmark: IExtendedLabeledRegionModel, label: string): void;
-    updateBookmarkHighlight(bookmark: IExtendedLabeledRegionModel, color: string): void;
-    updateBulkBookmarkHighlights(color: string): void;
-    setSelectedBookmarks(bookmarks: IExtendedLabeledRegionModel[]): void;
-    setBookmarkedRegions(regions: IMSTArray<typeof LabeledRegionModel>): void;
-    setBookmarkHighlightsVisible(arg: boolean): void;
-    setBookmarkLabelsVisible(arg: boolean): void;
-} & {
-    clearAllBookmarks(): void;
-    clearSelectedBookmarks(): void;
-    removeBookmarkObject(arg: Instance<typeof LabeledRegionModel>): void;
-} & {
-    afterAttach(): void;
-}, import("mobx-state-tree")._NotCustomized, {
-    type: "GridBookmarkWidget";
-    id: string;
-}>;
-export type GridBookmarkStateModel = ReturnType<typeof f>;
-export type GridBookmarkModel = Instance<GridBookmarkStateModel>;
-export {};

package/dist/GridBookmarkWidget/model.js

@@ -1,169 +0,0 @@
-"use strict";
-Object.defineProperty(exports, "__esModule", { value: true });
-exports.default = f;
-const util_1 = require("@jbrowse/core/util");
-const mst_1 = require("@jbrowse/core/util/types/mst");
-const mobx_1 = require("mobx");
-const mobx_state_tree_1 = require("mobx-state-tree");
-const LabeledRegionModel = mobx_state_tree_1.types
-    .compose(mst_1.Region, mobx_state_tree_1.types.model('Label', {
-    label: mobx_state_tree_1.types.optional(mobx_state_tree_1.types.string, ''),
-    highlight: mobx_state_tree_1.types.optional(mobx_state_tree_1.types.string, 'rgba(247, 129, 192, 0.35)'),
-}))
-    .actions(self => ({
-    setLabel(label) {
-        self.label = label;
-    },
-    setHighlight(color) {
-        self.highlight = color;
-    },
-}));
-const SharedBookmarksModel = mobx_state_tree_1.types.model('SharedBookmarksModel', {
-    sharedBookmarks: mobx_state_tree_1.types.maybe(mobx_state_tree_1.types.array(LabeledRegionModel)),
-});
-const localStorageKeyF = () => typeof window !== 'undefined'
-    ? `bookmarks-${[window.location.host + window.location.pathname].join('-')}`
-    : 'empty';
-function f(_pluginManager) {
-    return mobx_state_tree_1.types
-        .model('GridBookmarkModel', {
-        id: mst_1.ElementId,
-        type: mobx_state_tree_1.types.literal('GridBookmarkWidget'),
-        bookmarks: mobx_state_tree_1.types.optional(mobx_state_tree_1.types.array(LabeledRegionModel), () => JSON.parse((0, util_1.localStorageGetItem)(localStorageKeyF()) || '[]')),
-    })
-        .volatile(() => ({
-        selectedBookmarks: [],
-        selectedAssembliesPre: undefined,
-    }))
-        .views(self => ({
-        get bookmarkAssemblies() {
-            return [...new Set(self.bookmarks.map(r => r.assemblyName))];
-        },
-        get validAssemblies() {
-            const { assemblyManager } = (0, util_1.getSession)(self);
-            return new Set(this.bookmarkAssemblies.filter(a => assemblyManager.get(a)));
-        },
-        get areBookmarksHighlightedOnAllOpenViews() {
-            const { views } = (0, util_1.getSession)(self);
-            return views.every(v => 'bookmarkHighlightsVisible' in v ? v.bookmarkHighlightsVisible : true);
-        },
-        get areBookmarksHighlightLabelsOnAllOpenViews() {
-            const { views } = (0, util_1.getSession)(self);
-            return views.every(v => 'bookmarkLabelsVisible' in v ? v.bookmarkLabelsVisible : true);
-        },
-    }))
-        .views(self => ({
-        get bookmarksWithValidAssemblies() {
-            return self.bookmarks.filter(e => self.validAssemblies.has(e.assemblyName));
-        },
-    }))
-        .views(self => ({
-        get sharedBookmarksModel() {
-            return SharedBookmarksModel.create({
-                sharedBookmarks: JSON.parse(JSON.stringify(self.selectedBookmarks)),
-            });
-        },
-        get allBookmarksModel() {
-            return SharedBookmarksModel.create({
-                sharedBookmarks: JSON.parse(JSON.stringify(self.bookmarksWithValidAssemblies)),
-            });
-        },
-    }))
-        .actions(self => ({
-        setSelectedAssemblies(assemblies) {
-            self.selectedAssembliesPre = assemblies;
-        },
-    }))
-        .views(self => ({
-        get selectedAssemblies() {
-            var _a, _b;
-            return ((_b = (_a = self.selectedAssembliesPre) === null || _a === void 0 ? void 0 : _a.filter(f => self.validAssemblies.has(f))) !== null && _b !== void 0 ? _b : [...self.validAssemblies]);
-        },
-    }))
-        .actions(self => ({
-        importBookmarks(regions) {
-            self.bookmarks = (0, mobx_state_tree_1.cast)([...self.bookmarks, ...regions]);
-        },
-        addBookmark(region) {
-            self.bookmarks.push(region);
-        },
-        removeBookmark(index) {
-            self.bookmarks.splice(index, 1);
-        },
-        updateBookmarkLabel(bookmark, label) {
-            bookmark.correspondingObj.setLabel(label);
-        },
-        updateBookmarkHighlight(bookmark, color) {
-            bookmark.correspondingObj.setHighlight(color);
-        },
-        updateBulkBookmarkHighlights(color) {
-            for (const bookmark of self.selectedBookmarks) {
-                this.updateBookmarkHighlight(bookmark, color);
-            }
-        },
-        setSelectedBookmarks(bookmarks) {
-            self.selectedBookmarks = bookmarks;
-        },
-        setBookmarkedRegions(regions) {
-            self.bookmarks = (0, mobx_state_tree_1.cast)(regions);
-        },
-        setBookmarkHighlightsVisible(arg) {
-            var _a, _b;
-            const { views } = (0, util_1.getSession)(self);
-            for (const view of views) {
-                (_a = view.setBookmarkHighlightsVisible) === null || _a === void 0 ? void 0 : _a.call(view, arg);
-                (_b = view.views) === null || _b === void 0 ? void 0 : _b.map(view => {
-                    var _a;
-                    (_a = view.setBookmarkHighlightsVisible) === null || _a === void 0 ? void 0 : _a.call(view, arg);
-                });
-            }
-        },
-        setBookmarkLabelsVisible(arg) {
-            var _a, _b;
-            const { views } = (0, util_1.getSession)(self);
-            for (const view of views) {
-                (_a = view.setBookmarkLabelsVisible) === null || _a === void 0 ? void 0 : _a.call(view, arg);
-                (_b = view.views) === null || _b === void 0 ? void 0 : _b.map(view => {
-                    var _a;
-                    (_a = view.setBookmarkHighlightsVisible) === null || _a === void 0 ? void 0 : _a.call(view, arg);
-                });
-            }
-        },
-    }))
-        .actions(self => ({
-        clearAllBookmarks() {
-            self.setBookmarkedRegions(self.bookmarks.filter(bookmark => !self.validAssemblies.has(bookmark.assemblyName)));
-        },
-        clearSelectedBookmarks() {
-            for (const bookmark of self.selectedBookmarks) {
-                self.bookmarks.remove(bookmark.correspondingObj);
-            }
-            self.selectedBookmarks = [];
-        },
-        removeBookmarkObject(arg) {
-            self.bookmarks.remove(arg);
-        },
-    }))
-        .actions(self => ({
-        afterAttach() {
-            const key = localStorageKeyF();
-            function handler(e) {
-                if (e.key === key) {
-                    const localStorage = JSON.parse((0, util_1.localStorageGetItem)(key) || '[]');
-                    self.setBookmarkedRegions(localStorage);
-                }
-            }
-            window.addEventListener('storage', handler);
-            (0, mobx_state_tree_1.addDisposer)(self, () => {
-                window.removeEventListener('storage', handler);
-            });
-            (0, mobx_state_tree_1.addDisposer)(self, (0, mobx_1.autorun)(() => {
-                (0, util_1.localStorageSetItem)(key, JSON.stringify(self.bookmarks));
-            }));
-        },
-    }))
-        .postProcessSnapshot(snap => {
-        const { bookmarks: _, ...rest } = snap;
-        return rest;
-    });
-}