@jbrowse/plugin-grid-bookmark 2.3.4 → 2.4.1
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/dist/GridBookmarkWidget/components/ClearBookmarks.js +4 -20
- package/dist/GridBookmarkWidget/components/ClearBookmarks.js.map +1 -1
- package/dist/GridBookmarkWidget/components/DeleteBookmark.js +4 -23
- package/dist/GridBookmarkWidget/components/DeleteBookmark.js.map +1 -1
- package/dist/GridBookmarkWidget/components/DownloadBookmarks.js +2 -18
- package/dist/GridBookmarkWidget/components/DownloadBookmarks.js.map +1 -1
- package/dist/GridBookmarkWidget/components/ImportBookmarks.js +3 -11
- package/dist/GridBookmarkWidget/components/ImportBookmarks.js.map +1 -1
- package/dist/GridBookmarkWidget/model.js +1 -1
- package/dist/GridBookmarkWidget/model.js.map +1 -1
- package/dist/GridBookmarkWidget/utils.js +4 -8
- package/dist/GridBookmarkWidget/utils.js.map +1 -1
- package/dist/index.js +5 -5
- package/dist/index.js.map +1 -1
- package/esm/GridBookmarkWidget/components/ClearBookmarks.js +5 -21
- package/esm/GridBookmarkWidget/components/ClearBookmarks.js.map +1 -1
- package/esm/GridBookmarkWidget/components/DeleteBookmark.js +5 -24
- package/esm/GridBookmarkWidget/components/DeleteBookmark.js.map +1 -1
- package/esm/GridBookmarkWidget/components/DownloadBookmarks.js +3 -19
- package/esm/GridBookmarkWidget/components/DownloadBookmarks.js.map +1 -1
- package/esm/GridBookmarkWidget/components/ImportBookmarks.js +4 -12
- package/esm/GridBookmarkWidget/components/ImportBookmarks.js.map +1 -1
- package/esm/GridBookmarkWidget/model.js +1 -1
- package/esm/GridBookmarkWidget/model.js.map +1 -1
- package/esm/GridBookmarkWidget/utils.js +4 -8
- package/esm/GridBookmarkWidget/utils.js.map +1 -1
- package/esm/index.js +5 -5
- package/esm/index.js.map +1 -1
- package/package.json +2 -2
- package/src/GridBookmarkWidget/components/ClearBookmarks.tsx +10 -38
- package/src/GridBookmarkWidget/components/DeleteBookmark.tsx +10 -47
- package/src/GridBookmarkWidget/components/DownloadBookmarks.tsx +7 -28
- package/src/GridBookmarkWidget/components/ImportBookmarks.tsx +7 -25
- package/src/GridBookmarkWidget/model.ts +1 -1
- package/src/GridBookmarkWidget/utils.ts +5 -7
- package/src/index.ts +5 -5
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@@ -29,30 +29,14 @@ Object.defineProperty(exports, "__esModule", { value: true });
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const react_1 = __importStar(require("react"));
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const mobx_react_1 = require("mobx-react");
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const material_1 = require("@mui/material");
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const
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const ui_1 = require("@jbrowse/core/ui");
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// icons
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const ClearAll_1 = __importDefault(require("@mui/icons-material/ClearAll"));
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const Close_1 = __importDefault(require("@mui/icons-material/Close"));
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const useStyles = (0, mui_1.makeStyles)()(() => ({
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closeDialog: {
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position: 'absolute',
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right: 0,
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top: 0,
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},
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dialogContainer: {
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margin: 15,
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},
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}));
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function ClearBookmarks({ model }) {
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const { classes } = useStyles();
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const [dialogOpen, setDialogOpen] = (0, react_1.useState)(false);
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const { clearAllBookmarks } = model;
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return (react_1.default.createElement(react_1.default.Fragment, null,
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react_1.default.createElement(material_1.Button, { startIcon: react_1.default.createElement(ClearAll_1.default, null), "aria-label": "clear bookmarks", onClick: () => setDialogOpen(true) }, "Clear"),
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react_1.default.createElement(
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react_1.default.createElement(material_1.DialogTitle, null,
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"Clear bookmarks",
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react_1.default.createElement(material_1.IconButton, { className: classes.closeDialog, "aria-label": "close-dialog", onClick: () => setDialogOpen(false) },
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react_1.default.createElement(Close_1.default, null))),
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react_1.default.createElement(ui_1.Dialog, { open: dialogOpen, onClose: () => setDialogOpen(false), title: "Clear bookmarks" },
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react_1.default.createElement(material_1.DialogContent, null,
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react_1.default.createElement(material_1.Typography, null, "Clear all bookmarks? Note this will clear bookmarks for all assemblies")),
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react_1.default.createElement(material_1.DialogActions, null,
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@@ -60,7 +44,7 @@ function ClearBookmarks({ model }) {
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setDialogOpen(false);
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} }, "Cancel"),
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react_1.default.createElement(material_1.Button, { variant: "contained", color: "primary", onClick: () => {
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clearAllBookmarks();
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model.clearAllBookmarks();
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setDialogOpen(false);
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} }, "Confirm")))));
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}
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{"version":3,"file":"ClearBookmarks.js","sourceRoot":"","sources":["../../../src/GridBookmarkWidget/components/ClearBookmarks.tsx"],"names":[],"mappings":";;;;;;;;;;;;;;;;;;;;;;;;;;;;AAAA,+CAAuC;AACvC,2CAAqC;
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{"version":3,"file":"ClearBookmarks.js","sourceRoot":"","sources":["../../../src/GridBookmarkWidget/components/ClearBookmarks.tsx"],"names":[],"mappings":";;;;;;;;;;;;;;;;;;;;;;;;;;;;AAAA,+CAAuC;AACvC,2CAAqC;AACrC,4CAAgF;AAChF,yCAAyC;AAEzC,QAAQ;AACR,4EAAuD;AAKvD,SAAS,cAAc,CAAC,EAAE,KAAK,EAAgC;IAC7D,MAAM,CAAC,UAAU,EAAE,aAAa,CAAC,GAAG,IAAA,gBAAQ,EAAC,KAAK,CAAC,CAAA;IACnD,OAAO,CACL;QACE,8BAAC,iBAAM,IACL,SAAS,EAAE,8BAAC,kBAAY,OAAG,gBAChB,iBAAiB,EAC5B,OAAO,EAAE,GAAG,EAAE,CAAC,aAAa,CAAC,IAAI,CAAC,YAG3B;QACT,8BAAC,WAAM,IACL,IAAI,EAAE,UAAU,EAChB,OAAO,EAAE,GAAG,EAAE,CAAC,aAAa,CAAC,KAAK,CAAC,EACnC,KAAK,EAAC,iBAAiB;YAEvB,8BAAC,wBAAa;gBACZ,8BAAC,qBAAU,iFAGE,CACC;YAChB,8BAAC,wBAAa;gBACZ,8BAAC,iBAAM,IACL,OAAO,EAAC,WAAW,EACnB,KAAK,EAAC,WAAW,EACjB,OAAO,EAAE,GAAG,EAAE;wBACZ,aAAa,CAAC,KAAK,CAAC,CAAA;oBACtB,CAAC,aAGM;gBACT,8BAAC,iBAAM,IACL,OAAO,EAAC,WAAW,EACnB,KAAK,EAAC,SAAS,EACf,OAAO,EAAE,GAAG,EAAE;wBACZ,KAAK,CAAC,iBAAiB,EAAE,CAAA;wBACzB,aAAa,CAAC,KAAK,CAAC,CAAA;oBACtB,CAAC,cAGM,CACK,CACT,CACR,CACJ,CAAA;AACH,CAAC;AAED,kBAAe,IAAA,qBAAQ,EAAC,cAAc,CAAC,CAAA"}
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@@ -6,27 +6,10 @@ Object.defineProperty(exports, "__esModule", { value: true });
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const react_1 = __importDefault(require("react"));
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const mobx_react_1 = require("mobx-react");
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const util_1 = require("@jbrowse/core/util");
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const ui_1 = require("@jbrowse/core/ui");
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const material_1 = require("@mui/material");
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const mui_1 = require("tss-react/mui");
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const Close_1 = __importDefault(require("@mui/icons-material/Close"));
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const useStyles = (0, mui_1.makeStyles)()(() => ({
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closeDialog: {
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position: 'absolute',
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right: 0,
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top: 0,
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},
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dialogContainer: {
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margin: 15,
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},
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}));
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function DeleteBookmarkDialog({ rowNumber, model, onClose, }) {
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const { removeBookmark } = model;
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return (react_1.default.createElement(material_1.Dialog, { open: rowNumber !== undefined, onClose: onClose },
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react_1.default.createElement(material_1.DialogTitle, null,
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"Delete bookmark",
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react_1.default.createElement(material_1.IconButton, { className: classes.closeDialog, "aria-label": "close-dialog", onClick: onClose },
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react_1.default.createElement(Close_1.default, null))),
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return (react_1.default.createElement(ui_1.Dialog, { open: rowNumber !== undefined, onClose: onClose, title: "Delete bookmark" },
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react_1.default.createElement(material_1.DialogContent, null,
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react_1.default.createElement(material_1.Typography, null,
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"Remove",
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' ',
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"?")),
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react_1.default.createElement(material_1.DialogActions, null,
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react_1.default.createElement(material_1.Button, { variant: "contained", color: "secondary", onClick: () =>
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onClose();
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} }, "Cancel"),
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react_1.default.createElement(material_1.Button, { variant: "contained", color: "secondary", onClick: () => onClose() }, "Cancel"),
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react_1.default.createElement(material_1.Button, { variant: "contained", color: "primary", onClick: () => {
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if (rowNumber !== undefined) {
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removeBookmark(rowNumber);
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model.removeBookmark(rowNumber);
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onClose();
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}
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} }, "Confirm"))));
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{"version":3,"file":"DeleteBookmark.js","sourceRoot":"","sources":["../../../src/GridBookmarkWidget/components/DeleteBookmark.tsx"],"names":[],"mappings":";;;;;AAAA,kDAAyB;AACzB,2CAAqC;
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{"version":3,"file":"DeleteBookmark.js","sourceRoot":"","sources":["../../../src/GridBookmarkWidget/components/DeleteBookmark.tsx"],"names":[],"mappings":";;;;;AAAA,kDAAyB;AACzB,2CAAqC;AACrC,6CAAsD;AACtD,yCAAyC;AACzC,4CAAgF;AAKhF,SAAS,oBAAoB,CAAC,EAC5B,SAAS,EACT,KAAK,EACL,OAAO,GAKR;IACC,OAAO,CACL,8BAAC,WAAM,IACL,IAAI,EAAE,SAAS,KAAK,SAAS,EAC7B,OAAO,EAAE,OAAO,EAChB,KAAK,EAAC,iBAAiB;QAEvB,8BAAC,wBAAa;YACZ,8BAAC,qBAAU;;gBACF,GAAG;gBACV,4CACG,SAAS,KAAK,SAAS;oBACtB,CAAC,CAAC,IAAA,wBAAiB,EAAC,KAAK,CAAC,iBAAiB,CAAC,SAAS,CAAC,CAAC;oBACvD,CAAC,CAAC,EAAE,CACD;gBAAC,GAAG;oBAEA,CACC;QAChB,8BAAC,wBAAa;YACZ,8BAAC,iBAAM,IAAC,OAAO,EAAC,WAAW,EAAC,KAAK,EAAC,WAAW,EAAC,OAAO,EAAE,GAAG,EAAE,CAAC,OAAO,EAAE,aAE7D;YAET,8BAAC,iBAAM,IACL,OAAO,EAAC,WAAW,EACnB,KAAK,EAAC,SAAS,EACf,OAAO,EAAE,GAAG,EAAE;oBACZ,IAAI,SAAS,KAAK,SAAS,EAAE;wBAC3B,KAAK,CAAC,cAAc,CAAC,SAAS,CAAC,CAAA;wBAC/B,OAAO,EAAE,CAAA;qBACV;gBACH,CAAC,cAGM,CACK,CACT,CACV,CAAA;AACH,CAAC;AAED,kBAAe,IAAA,qBAAQ,EAAC,oBAAoB,CAAC,CAAA"}
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const ui_1 = require("@jbrowse/core/ui");
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const Close_1 = __importDefault(require("@mui/icons-material/Close"));
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const GetApp_1 = __importDefault(require("@mui/icons-material/GetApp"));
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const utils_1 = require("../utils");
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},
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flexItem: {
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width: 200,
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},
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function DownloadBookmarks({ model }) {
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const { bookmarkedRegions } = model;
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react_1.default.createElement(material_1.Button, { startIcon: react_1.default.createElement(GetApp_1.default, null), onClick: () => setDialogOpen(true) }, "Download"),
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react_1.default.createElement(Close_1.default, null))),
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react_1.default.createElement(ui_1.Dialog, { open: dialogOpen, onClose: () => setDialogOpen(false), title: "Download bookmarks" },
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react_1.default.createElement(material_1.DialogContent, null,
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react_1.default.createElement(material_1.Typography, null, "Format to download"),
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react_1.default.createElement(material_1.Select, { className: classes.flexItem, "data-testid": "selectFileType", value: fileType, onChange: event => setFileType(event.target.value) },
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{"version":3,"file":"DownloadBookmarks.js","sourceRoot":"","sources":["../../../src/GridBookmarkWidget/components/DownloadBookmarks.tsx"],"names":[],"mappings":";;;;;;;;;;;;;;;;;;;;;;;;;;;;AAAA,+CAAuC;AACvC,2CAAqC;AAErC,
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{"version":3,"file":"DownloadBookmarks.js","sourceRoot":"","sources":["../../../src/GridBookmarkWidget/components/DownloadBookmarks.tsx"],"names":[],"mappings":";;;;;;;;;;;;;;;;;;;;;;;;;;;;AAAA,+CAAuC;AACvC,2CAAqC;AAErC,4CAOsB;AACtB,yCAAyC;AACzC,uCAA0C;AAC1C,wEAAmD;AAGnD,oCAA+C;AAE/C,MAAM,SAAS,GAAG,IAAA,gBAAU,GAAE,CAAC,GAAG,EAAE,CAAC,CAAC;IACpC,QAAQ,EAAE;QACR,MAAM,EAAE,CAAC;KACV;CACF,CAAC,CAAC,CAAA;AAEH,SAAS,iBAAiB,CAAC,EAAE,KAAK,EAAgC;IAChE,MAAM,EAAE,OAAO,EAAE,GAAG,SAAS,EAAE,CAAA;IAC/B,MAAM,CAAC,UAAU,EAAE,aAAa,CAAC,GAAG,IAAA,gBAAQ,EAAC,KAAK,CAAC,CAAA;IACnD,MAAM,CAAC,QAAQ,EAAE,WAAW,CAAC,GAAG,IAAA,gBAAQ,EAAC,KAAK,CAAC,CAAA;IAC/C,MAAM,EAAE,iBAAiB,EAAE,GAAG,KAAK,CAAA;IAEnC,OAAO,CACL;QACE,8BAAC,iBAAM,IAAC,SAAS,EAAE,8BAAC,gBAAU,OAAG,EAAE,OAAO,EAAE,GAAG,EAAE,CAAC,aAAa,CAAC,IAAI,CAAC,eAE5D;QACT,8BAAC,WAAM,IACL,IAAI,EAAE,UAAU,EAChB,OAAO,EAAE,GAAG,EAAE,CAAC,aAAa,CAAC,KAAK,CAAC,EACnC,KAAK,EAAC,oBAAoB;YAE1B,8BAAC,wBAAa;gBACZ,8BAAC,qBAAU,6BAAgC;gBAC3C,8BAAC,iBAAM,IACL,SAAS,EAAE,OAAO,CAAC,QAAQ,iBACf,gBAAgB,EAC5B,KAAK,EAAE,QAAQ,EACf,QAAQ,EAAE,KAAK,CAAC,EAAE,CAAC,WAAW,CAAC,KAAK,CAAC,MAAM,CAAC,KAAK,CAAC;oBAElD,8BAAC,mBAAQ,IAAC,KAAK,EAAC,KAAK,UAAe;oBACpC,8BAAC,mBAAQ,IAAC,KAAK,EAAC,KAAK,UAAe,CAC7B,CACK;YAChB,8BAAC,wBAAa;gBACZ,8BAAC,iBAAM,IACL,OAAO,EAAC,WAAW,EACnB,KAAK,EAAC,WAAW,EACjB,OAAO,EAAE,GAAG,EAAE,CAAC,aAAa,CAAC,KAAK,CAAC,aAG5B;gBACT,8BAAC,iBAAM,IACL,SAAS,EAAE,OAAO,CAAC,QAAQ,iBACf,gBAAgB,EAC5B,OAAO,EAAC,WAAW,EACnB,KAAK,EAAC,SAAS,EACf,SAAS,EAAE,8BAAC,gBAAU,OAAG,EACzB,OAAO,EAAE,GAAG,EAAE;wBACZ,IAAA,4BAAoB,EAAC,iBAAiB,EAAE,QAAQ,EAAE,KAAK,CAAC,CAAA;wBACxD,aAAa,CAAC,KAAK,CAAC,CAAA;oBACtB,CAAC,eAGM,CACK,CACT,CACR,CACJ,CAAA;AACH,CAAC;AAED,kBAAe,IAAA,qBAAQ,EAAC,iBAAiB,CAAC,CAAA"}
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const useStyles = (0, mui_1.makeStyles)()(() => ({
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const [selectedAsm, setSelectedAsm] = (0, react_1.useState)(assemblyName || assemblyNames[0]);
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react_1.default.createElement(material_1.Button, { startIcon: react_1.default.createElement(Publish_1.default, null), onClick: () => setDialogOpen(true) }, "Import"),
|
|
62
|
-
react_1.default.createElement(
|
|
63
|
-
react_1.default.createElement(material_1.DialogTitle, null,
|
|
64
|
-
"Import bookmarks",
|
|
65
|
-
react_1.default.createElement(material_1.IconButton, { className: classes.closeDialog, "aria-label": "close-dialog", onClick: () => setDialogOpen(false) },
|
|
66
|
-
react_1.default.createElement(Close_1.default, null))),
|
|
58
|
+
react_1.default.createElement(ui_2.Dialog, { open: dialogOpen, onClose: () => setDialogOpen(false), maxWidth: "xl", title: "Import bookmarks" },
|
|
67
59
|
react_1.default.createElement(material_1.DialogContent, null,
|
|
68
60
|
react_1.default.createElement(material_1.Typography, null, "Choose a BED format file to import. The first 4 columns will be used"),
|
|
69
61
|
react_1.default.createElement(ui_1.FileSelector, { location: location, setLocation: setLocation, name: "File" }),
|
|
@@ -1 +1 @@
|
|
|
1
|
-
{"version":3,"file":"ImportBookmarks.js","sourceRoot":"","sources":["../../../src/GridBookmarkWidget/components/ImportBookmarks.tsx"],"names":[],"mappings":";;;;;;;;;;;;;;;;;;;;;;;;;;;;AAAA,+CAAuC;AACvC,2CAAqC;AACrC,6CAA+C;AAC/C,yFAAgE;AAEhE,yCAA+C;AAC/C,8CAAoD;AACpD,
|
|
1
|
+
{"version":3,"file":"ImportBookmarks.js","sourceRoot":"","sources":["../../../src/GridBookmarkWidget/components/ImportBookmarks.tsx"],"names":[],"mappings":";;;;;;;;;;;;;;;;;;;;;;;;;;;;AAAA,+CAAuC;AACvC,2CAAqC;AACrC,6CAA+C;AAC/C,yFAAgE;AAEhE,yCAA+C;AAC/C,8CAAoD;AACpD,4CAAgF;AAChF,yCAAyC;AACzC,uCAA0C;AAE1C,QAAQ;AACR,0EAAoD;AAKpD,MAAM,SAAS,GAAG,IAAA,gBAAU,GAAE,CAAC,GAAG,EAAE,CAAC,CAAC;IACpC,eAAe,EAAE;QACf,MAAM,EAAE,EAAE;KACX;IACD,QAAQ,EAAE;QACR,MAAM,EAAE,CAAC;KACV;CACF,CAAC,CAAC,CAAA;AAEH,SAAS,eAAe,CAAC,EACvB,KAAK,EACL,YAAY,GAIb;IACC,MAAM,EAAE,OAAO,EAAE,GAAG,SAAS,EAAE,CAAA;IAC/B,MAAM,OAAO,GAAG,IAAA,iBAAU,EAAC,KAAK,CAAC,CAAA;IACjC,MAAM,EAAE,aAAa,EAAE,GAAG,OAAO,CAAA;IACjC,MAAM,CAAC,UAAU,EAAE,aAAa,CAAC,GAAG,IAAA,gBAAQ,EAAC,KAAK,CAAC,CAAA;IACnD,MAAM,CAAC,QAAQ,EAAE,WAAW,CAAC,GAAG,IAAA,gBAAQ,GAAgB,CAAA;IACxD,MAAM,CAAC,KAAK,EAAE,QAAQ,CAAC,GAAG,IAAA,gBAAQ,GAAW,CAAA;IAC7C,MAAM,CAAC,WAAW,EAAE,cAAc,CAAC,GAAG,IAAA,gBAAQ,EAC5C,YAAY,IAAI,aAAa,CAAC,CAAC,CAAC,CACjC,CAAA;IAED,OAAO,CACL;QACE,8BAAC,iBAAM,IAAC,SAAS,EAAE,8BAAC,iBAAU,OAAG,EAAE,OAAO,EAAE,GAAG,EAAE,CAAC,aAAa,CAAC,IAAI,CAAC,aAE5D;QACT,8BAAC,WAAM,IACL,IAAI,EAAE,UAAU,EAChB,OAAO,EAAE,GAAG,EAAE,CAAC,aAAa,CAAC,KAAK,CAAC,EACnC,QAAQ,EAAC,IAAI,EACb,KAAK,EAAC,kBAAkB;YAExB,8BAAC,wBAAa;gBACZ,8BAAC,qBAAU,+EAEE;gBAEb,8BAAC,iBAAY,IACX,QAAQ,EAAE,QAAQ,EAClB,WAAW,EAAE,WAAW,EACxB,IAAI,EAAC,MAAM,GACX;gBACF,8BAAC,qBAAU,oDAAuD;gBAClE,8BAAC,0BAAgB,IACf,QAAQ,EAAE,GAAG,CAAC,EAAE,CAAC,cAAc,CAAC,GAAG,CAAC,EACpC,OAAO,EAAE,OAAO,EAChB,QAAQ,EAAE,WAAW,GACrB;gBACD,KAAK,CAAC,CAAC,CAAC,CACP,8BAAC,qBAAU,IAAC,KAAK,EAAC,OAAO,EAAC,OAAO,EAAC,IAAI,IAAE,GAAG,KAAK,EAAE,CAAc,CACjE,CAAC,CAAC,CAAC,IAAI,CACM;YAChB,8BAAC,wBAAa;gBACZ,8BAAC,iBAAM,IACL,OAAO,EAAC,WAAW,EACnB,KAAK,EAAC,WAAW,EACjB,OAAO,EAAE,GAAG,EAAE,CAAC,aAAa,CAAC,KAAK,CAAC,aAG5B;gBACT,8BAAC,iBAAM,IACL,SAAS,EAAE,OAAO,CAAC,QAAQ,iBACf,cAAc,EAC1B,OAAO,EAAC,WAAW,EACnB,KAAK,EAAC,SAAS,EACf,QAAQ,EAAE,CAAC,QAAQ,EACnB,SAAS,EAAE,8BAAC,iBAAU,OAAG,EACzB,OAAO,EAAE,KAAK,IAAI,EAAE;wBAClB,IAAI;4BACF,IAAI,CAAC,QAAQ,EAAE;gCACb,OAAM;6BACP;4BACD,MAAM,IAAI,GAAG,MAAM,IAAA,iBAAY,EAAC,QAAQ,CAAC,CAAC,QAAQ,CAAC,MAAM,CAAC,CAAA;4BAC1D,MAAM,OAAO,GAAG,IAAI;iCACjB,KAAK,CAAC,YAAY,CAAC;iCACnB,MAAM,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,CAAC,CAAC,IAAI,EAAE,CAAC;iCACvB,MAAM,CACL,CAAC,CAAC,EAAE,CACF,CAAC,CAAC,CAAC,UAAU,CAAC,GAAG,CAAC;gCAClB,CAAC,CAAC,CAAC,UAAU,CAAC,OAAO,CAAC;gCACtB,CAAC,CAAC,CAAC,UAAU,CAAC,SAAS,CAAC,CAC3B;iCACA,GAAG,CAAC,IAAI,CAAC,EAAE;gCACV,MAAM,CAAC,OAAO,EAAE,KAAK,EAAE,GAAG,EAAE,IAAI,CAAC,GAAG,IAAI,CAAC,KAAK,CAAC,IAAI,CAAC,CAAA;gCACpD,OAAO;oCACL,YAAY,EAAE,WAAW;oCACzB,OAAO;oCACP,KAAK,EAAE,CAAC,KAAK;oCACb,GAAG,EAAE,CAAC,GAAG;oCACT,KAAK,EAAE,IAAI,KAAK,GAAG,CAAC,CAAC,CAAC,SAAS,CAAC,CAAC,CAAC,IAAI;iCACvC,CAAA;4BACH,CAAC,CAAC,CAAA;4BACJ,KAAK,CAAC,eAAe,CAAC,OAAO,CAAC,CAAA;4BAC9B,aAAa,CAAC,KAAK,CAAC,CAAA;yBACrB;wBAAC,OAAO,CAAC,EAAE;4BACV,OAAO,CAAC,KAAK,CAAC,CAAC,CAAC,CAAA;4BAChB,QAAQ,CAAC,CAAC,CAAC,CAAA;yBACZ;oBACH,CAAC,aAGM,CACK,CACT,CACR,CACJ,CAAA;AACH,CAAC;AAED,kBAAe,IAAA,qBAAQ,EAAC,eAAe,CAAC,CAAA"}
|
|
@@ -20,7 +20,7 @@ function f(pluginManager) {
|
|
|
20
20
|
})
|
|
21
21
|
.actions(self => ({
|
|
22
22
|
importBookmarks(regions) {
|
|
23
|
-
self.bookmarkedRegions = (0, mobx_state_tree_1.cast)(self.bookmarkedRegions
|
|
23
|
+
self.bookmarkedRegions = (0, mobx_state_tree_1.cast)([...self.bookmarkedRegions, ...regions]);
|
|
24
24
|
},
|
|
25
25
|
addBookmark(region) {
|
|
26
26
|
self.bookmarkedRegions.push(region);
|
|
@@ -1 +1 @@
|
|
|
1
|
-
{"version":3,"file":"model.js","sourceRoot":"","sources":["../../src/GridBookmarkWidget/model.ts"],"names":[],"mappings":";;AAAA,qDAAuD;AAGvD,sDAA+E;AAE/E,MAAM,kBAAkB,GAAG,uBAAK;KAC7B,OAAO,CACN,YAAW,EACX,uBAAK,CAAC,KAAK,CAAC,OAAO,EAAE,EAAE,KAAK,EAAE,uBAAK,CAAC,QAAQ,CAAC,uBAAK,CAAC,MAAM,EAAE,EAAE,CAAC,EAAE,CAAC,CAClE;KACA,OAAO,CAAC,IAAI,CAAC,EAAE,CAAC,CAAC;IAChB,QAAQ,CAAC,KAAa;QACpB,IAAI,CAAC,KAAK,GAAG,KAAK,CAAA;IACpB,CAAC;CACF,CAAC,CAAC,CAAA;AAEL,SAAwB,CAAC,CAAC,aAA4B;IACpD,OAAO,uBAAK;SACT,KAAK,CAAC,mBAAmB,EAAE;QAC1B,EAAE,EAAE,eAAS;QACb,IAAI,EAAE,uBAAK,CAAC,OAAO,CAAC,oBAAoB,CAAC;QACzC,IAAI,EAAE,uBAAK,CAAC,aAAa,CACvB,aAAa,CAAC,gBAAgB,CAAC,MAAM,EAAE,YAAY,CAAC,CACrD;QACD,iBAAiB,EAAE,uBAAK,CAAC,KAAK,CAAC,kBAAkB,CAAC;QAClD,qBAAqB,EAAE,EAAE;KAC1B,CAAC;SACD,OAAO,CAAC,IAAI,CAAC,EAAE,CAAC,CAAC;QAChB,eAAe,CAAC,OAAiB;YAC/B,IAAI,CAAC,iBAAiB,GAAG,IAAA,sBAAI,EAAC,IAAI,CAAC,iBAAiB,
|
|
1
|
+
{"version":3,"file":"model.js","sourceRoot":"","sources":["../../src/GridBookmarkWidget/model.ts"],"names":[],"mappings":";;AAAA,qDAAuD;AAGvD,sDAA+E;AAE/E,MAAM,kBAAkB,GAAG,uBAAK;KAC7B,OAAO,CACN,YAAW,EACX,uBAAK,CAAC,KAAK,CAAC,OAAO,EAAE,EAAE,KAAK,EAAE,uBAAK,CAAC,QAAQ,CAAC,uBAAK,CAAC,MAAM,EAAE,EAAE,CAAC,EAAE,CAAC,CAClE;KACA,OAAO,CAAC,IAAI,CAAC,EAAE,CAAC,CAAC;IAChB,QAAQ,CAAC,KAAa;QACpB,IAAI,CAAC,KAAK,GAAG,KAAK,CAAA;IACpB,CAAC;CACF,CAAC,CAAC,CAAA;AAEL,SAAwB,CAAC,CAAC,aAA4B;IACpD,OAAO,uBAAK;SACT,KAAK,CAAC,mBAAmB,EAAE;QAC1B,EAAE,EAAE,eAAS;QACb,IAAI,EAAE,uBAAK,CAAC,OAAO,CAAC,oBAAoB,CAAC;QACzC,IAAI,EAAE,uBAAK,CAAC,aAAa,CACvB,aAAa,CAAC,gBAAgB,CAAC,MAAM,EAAE,YAAY,CAAC,CACrD;QACD,iBAAiB,EAAE,uBAAK,CAAC,KAAK,CAAC,kBAAkB,CAAC;QAClD,qBAAqB,EAAE,EAAE;KAC1B,CAAC;SACD,OAAO,CAAC,IAAI,CAAC,EAAE,CAAC,CAAC;QAChB,eAAe,CAAC,OAAiB;YAC/B,IAAI,CAAC,iBAAiB,GAAG,IAAA,sBAAI,EAAC,CAAC,GAAG,IAAI,CAAC,iBAAiB,EAAE,GAAG,OAAO,CAAC,CAAC,CAAA;QACxE,CAAC;QACD,WAAW,CAAC,MAAc;YACxB,IAAI,CAAC,iBAAiB,CAAC,IAAI,CAAC,MAAM,CAAC,CAAA;QACrC,CAAC;QACD,cAAc,CAAC,KAAa;YAC1B,IAAI,CAAC,iBAAiB,CAAC,MAAM,CAAC,KAAK,EAAE,CAAC,CAAC,CAAA;QACzC,CAAC;QACD,iBAAiB;YACf,IAAI,CAAC,iBAAiB,CAAC,KAAK,EAAE,CAAA;QAChC,CAAC;QACD,mBAAmB,CAAC,KAAa,EAAE,KAAa;;YAC9C,MAAA,IAAI,CAAC,iBAAiB,CAAC,KAAK,CAAC,0CAAE,QAAQ,CAAC,KAAK,CAAC,CAAA;QAChD,CAAC;QACD,mBAAmB,CAAC,QAAgB;YAClC,IAAI,CAAC,qBAAqB,GAAG,QAAQ,CAAA;QACvC,CAAC;KACF,CAAC,CAAC;SACF,KAAK,CAAC,IAAI,CAAC,EAAE,CAAC,CAAC;QACd,IAAI,gBAAgB;YAClB,OAAO,CACL,IAAI,CAAC,qBAAqB;gBAC1B,CAAC,IAAI,CAAC,iBAAiB,CAAC,MAAM;oBAC5B,CAAC,CAAC,IAAI,CAAC,iBAAiB,CAAC,CAAC,CAAC,CAAC,YAAY;oBACxC,CAAC,CAAC,EAAE,CAAC,CACR,CAAA;QACH,CAAC;QACD,IAAI,UAAU;YACZ,OAAO;gBACL,GAAG,IAAI,GAAG,CAAC,IAAI,CAAC,iBAAiB,CAAC,GAAG,CAAC,MAAM,CAAC,EAAE,CAAC,MAAM,CAAC,YAAY,CAAC,CAAC;aACtE,CAAA;QACH,CAAC;KACF,CAAC,CAAC,CAAA;AACP,CAAC;AA9CD,oBA8CC"}
|
|
@@ -12,7 +12,7 @@ async function navToBookmark(locString, views, model) {
|
|
|
12
12
|
const newViewId = `${model.id}_${selectedAssembly}`;
|
|
13
13
|
let view = (views.find(v => v.type === 'LinearGenomeView' && v.id === newViewId) ||
|
|
14
14
|
views.find(v => v.type === 'LinearGenomeView' &&
|
|
15
|
-
// @ts-
|
|
15
|
+
// @ts-expect-error
|
|
16
16
|
v.assemblyNames[0] === selectedAssembly));
|
|
17
17
|
if (!view) {
|
|
18
18
|
view = session.addView('LinearGenomeView', {
|
|
@@ -53,13 +53,9 @@ function downloadBookmarkFile(bookmarkedRegions, fileFormat, model) {
|
|
|
53
53
|
? 'text/x-bed;charset=utf-8'
|
|
54
54
|
: 'text/tab-separated-values;charset=utf-8',
|
|
55
55
|
});
|
|
56
|
-
|
|
57
|
-
|
|
58
|
-
|
|
59
|
-
}
|
|
60
|
-
else {
|
|
61
|
-
fileName = 'jbrowse_bookmarks.tsv';
|
|
62
|
-
}
|
|
56
|
+
const fileName = fileFormat === 'BED'
|
|
57
|
+
? `jbrowse_bookmarks_${selectedAssembly}.bed`
|
|
58
|
+
: 'jbrowse_bookmarks.tsv';
|
|
63
59
|
(0, file_saver_1.saveAs)(blob, fileName);
|
|
64
60
|
}
|
|
65
61
|
exports.downloadBookmarkFile = downloadBookmarkFile;
|
|
@@ -1 +1 @@
|
|
|
1
|
-
{"version":3,"file":"utils.js","sourceRoot":"","sources":["../../src/GridBookmarkWidget/utils.ts"],"names":[],"mappings":";;;AAAA,2CAAmC;AACnC,6CAAkE;AAY3D,KAAK,UAAU,aAAa,CACjC,SAAiB,EACjB,KAA0B,EAC1B,KAAwB;IAExB,MAAM,OAAO,GAAG,IAAA,iBAAU,EAAC,KAAK,CAAC,CAAA;IACjC,IAAI;QACF,0EAA0E;QAC1E,iEAAiE;QACjE,MAAM,EAAE,gBAAgB,EAAE,GAAG,KAAK,CAAA;QAClC,MAAM,SAAS,GAAG,GAAG,KAAK,CAAC,EAAE,IAAI,gBAAgB,EAAE,CAAA;QACnD,IAAI,IAAI,GAAG,CAAC,KAAK,CAAC,IAAI,CACpB,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,IAAI,KAAK,kBAAkB,IAAI,CAAC,CAAC,EAAE,KAAK,SAAS,CACzD;YACC,KAAK,CAAC,IAAI,CACR,CAAC,CAAC,EAAE,CACF,CAAC,CAAC,IAAI,KAAK,kBAAkB;gBAC7B,
|
|
1
|
+
{"version":3,"file":"utils.js","sourceRoot":"","sources":["../../src/GridBookmarkWidget/utils.ts"],"names":[],"mappings":";;;AAAA,2CAAmC;AACnC,6CAAkE;AAY3D,KAAK,UAAU,aAAa,CACjC,SAAiB,EACjB,KAA0B,EAC1B,KAAwB;IAExB,MAAM,OAAO,GAAG,IAAA,iBAAU,EAAC,KAAK,CAAC,CAAA;IACjC,IAAI;QACF,0EAA0E;QAC1E,iEAAiE;QACjE,MAAM,EAAE,gBAAgB,EAAE,GAAG,KAAK,CAAA;QAClC,MAAM,SAAS,GAAG,GAAG,KAAK,CAAC,EAAE,IAAI,gBAAgB,EAAE,CAAA;QACnD,IAAI,IAAI,GAAG,CAAC,KAAK,CAAC,IAAI,CACpB,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,IAAI,KAAK,kBAAkB,IAAI,CAAC,CAAC,EAAE,KAAK,SAAS,CACzD;YACC,KAAK,CAAC,IAAI,CACR,CAAC,CAAC,EAAE,CACF,CAAC,CAAC,IAAI,KAAK,kBAAkB;gBAC7B,mBAAmB;gBACnB,CAAC,CAAC,aAAa,CAAC,CAAC,CAAC,KAAK,gBAAgB,CAC1C,CAAa,CAAA;QAEhB,IAAI,CAAC,IAAI,EAAE;YACT,IAAI,GAAG,OAAO,CAAC,OAAO,CAAC,kBAAkB,EAAE;gBACzC,EAAE,EAAE,SAAS;aACd,CAAQ,CAAA;SACV;QACD,MAAM,IAAI,CAAC,cAAc,CAAC,SAAS,EAAE,gBAAgB,CAAC,CAAA;KACvD;IAAC,OAAO,CAAC,EAAE;QACV,OAAO,CAAC,KAAK,CAAC,CAAC,CAAC,CAAA;QAChB,OAAO,CAAC,MAAM,CAAC,GAAG,CAAC,EAAE,EAAE,OAAO,CAAC,CAAA;KAChC;AACH,CAAC;AA/BD,sCA+BC;AAED,SAAgB,oBAAoB,CAClC,iBAAkC,EAClC,UAAkB,EAClB,KAAwB;IAExB,MAAM,EAAE,gBAAgB,EAAE,GAAG,KAAK,CAAA;IAClC,MAAM,UAAU,GACd,UAAU,KAAK,KAAK;QAClB,CAAC,CAAC,wDAAwD;QAC1D,CAAC,CAAC,EAAE,CAAA;IAER,MAAM,YAAY,GAAG,iBAAiB;SACnC,GAAG,CAAC,CAAC,CAAC,EAAE;QACP,MAAM,EAAE,KAAK,EAAE,GAAG,CAAC,CAAA;QACnB,MAAM,QAAQ,GAAG,KAAK,KAAK,EAAE,CAAC,CAAC,CAAC,GAAG,CAAC,CAAC,CAAC,KAAK,CAAA;QAC3C,MAAM,SAAS,GAAG,IAAA,wBAAiB,EAAC,CAAC,CAAC,CAAA;QAEtC,IAAI,UAAU,KAAK,KAAK,EAAE;YACxB,IAAI,CAAC,CAAC,YAAY,KAAK,gBAAgB,IAAI,gBAAgB,KAAK,KAAK,EAAE;gBACrE,OAAO,GAAG,CAAC,CAAC,OAAO,KAAK,CAAC,CAAC,KAAK,KAAK,CAAC,CAAC,GAAG,KAAK,QAAQ,IAAI,CAAA;aAC3D;YACD,OAAO,EAAE,CAAA;SACV;aAAM;YACL,OAAO,GAAG,CAAC,CAAC,OAAO,KAAK,CAAC,CAAC,KAAK,GAAG,CAAC,KAAK,CAAC,CAAC,GAAG,KAAK,QAAQ,KACxD,CAAC,CAAC,YACJ,KAAK,SAAS,IAAI,CAAA;SACnB;IACH,CAAC,CAAC;SACD,MAAM,CAAC,CAAC,CAAC,EAAE,CAAC,EAAE,EAAE,CAAC,CAAC,GAAG,CAAC,EAAE,UAAU,CAAC,CAAA;IAEtC,MAAM,IAAI,GAAG,IAAI,IAAI,CAAC,CAAC,YAAY,IAAI,EAAE,CAAC,EAAE;QAC1C,IAAI,EACF,UAAU,KAAK,KAAK;YAClB,CAAC,CAAC,0BAA0B;YAC5B,CAAC,CAAC,yCAAyC;KAChD,CAAC,CAAA;IAEF,MAAM,QAAQ,GACZ,UAAU,KAAK,KAAK;QAClB,CAAC,CAAC,qBAAqB,gBAAgB,MAAM;QAC7C,CAAC,CAAC,uBAAuB,CAAA;IAE7B,IAAA,mBAAM,EAAC,IAAI,EAAE,QAAQ,CAAC,CAAA;AACxB,CAAC;AA3CD,oDA2CC"}
|
package/dist/index.js
CHANGED
|
@@ -47,7 +47,7 @@ class default_1 extends Plugin_1.default {
|
|
|
47
47
|
this.activateBookmarkWidget();
|
|
48
48
|
bookmarkWidget = widgets.get('GridBookmark');
|
|
49
49
|
}
|
|
50
|
-
// @ts-
|
|
50
|
+
// @ts-expect-error
|
|
51
51
|
bookmarkWidget.addBookmark(firstRegion);
|
|
52
52
|
}
|
|
53
53
|
},
|
|
@@ -60,13 +60,13 @@ class default_1 extends Plugin_1.default {
|
|
|
60
60
|
{
|
|
61
61
|
label: 'Open bookmark widget',
|
|
62
62
|
icon: Bookmarks_1.default,
|
|
63
|
-
// @ts-
|
|
63
|
+
// @ts-expect-error
|
|
64
64
|
onClick: self.activateBookmarkWidget,
|
|
65
65
|
},
|
|
66
66
|
{
|
|
67
67
|
label: 'Bookmark current region',
|
|
68
68
|
icon: Bookmark_1.default,
|
|
69
|
-
// @ts-
|
|
69
|
+
// @ts-expect-error
|
|
70
70
|
onClick: self.bookmarkCurrentRegion,
|
|
71
71
|
},
|
|
72
72
|
];
|
|
@@ -87,11 +87,11 @@ class default_1 extends Plugin_1.default {
|
|
|
87
87
|
const { widgets } = session;
|
|
88
88
|
let bookmarkWidget = widgets.get('GridBookmark');
|
|
89
89
|
if (!bookmarkWidget) {
|
|
90
|
-
// @ts-
|
|
90
|
+
// @ts-expect-error
|
|
91
91
|
self.activateBookmarkWidget();
|
|
92
92
|
bookmarkWidget = widgets.get('GridBookmark');
|
|
93
93
|
}
|
|
94
|
-
// @ts-
|
|
94
|
+
// @ts-expect-error
|
|
95
95
|
bookmarkWidget.addBookmark(firstRegion);
|
|
96
96
|
}
|
|
97
97
|
},
|
package/dist/index.js.map
CHANGED
|
@@ -1 +1 @@
|
|
|
1
|
-
{"version":3,"file":"index.js","sourceRoot":"","sources":["../src/index.ts"],"names":[],"mappings":";;;;;AAAA,kEAAyC;AAGzC,6CAA0E;AAM1E,QAAQ;AACR,4EAAuD;AACvD,8EAAyD;AAEzD,8EAAsD;AAEtD,eAAqB,SAAQ,gBAAM;IAAnC;;QACE,SAAI,GAAG,oBAAoB,CAAA;IAwH7B,CAAC;IAtHC,OAAO,CAAC,aAA4B;QAClC,IAAA,4BAAmB,EAAC,aAAa,CAAC,CAAA;QAElC,aAAa,CAAC,mBAAmB,CAC/B,6BAA6B,EAC7B,CAAC,gBAAsC,EAAE,EAAE;YACzC,IAAI,gBAAgB,CAAC,IAAI,KAAK,kBAAkB,EAAE;gBAChD,MAAM,EAAE,UAAU,EAAE,GAAG,gBAA4B,CAAA;gBACnD,MAAM,aAAa,GAAG,UAAU,CAAC,MAAM,CACrC,CAAC,IAA2B,EAAE,EAAE;oBAC9B,MAAM,cAAc,GAAG,IAAI,CAAC,SAAS,CAAA;oBACrC,MAAM,wBAAwB,GAAG,IAAI,CAAC,mBAAmB,CAAA;oBACzD,OAAO;wBACL,OAAO,EAAE;4BACP,sBAAsB;gCACpB,MAAM,OAAO,GAAG,IAAA,iBAAU,EAAC,IAAI,CAAC,CAAA;gCAChC,IAAI,IAAA,gCAAyB,EAAC,OAAO,CAAC,EAAE;oCACtC,IAAI,cAAc,GAAG,OAAO,CAAC,OAAO,CAAC,GAAG,CAAC,cAAc,CAAC,CAAA;oCACxD,IAAI,CAAC,cAAc,EAAE;wCACnB,cAAc,GAAG,OAAO,CAAC,SAAS,CAChC,oBAAoB,EACpB,cAAc,EACd,EAAE,IAAI,EAAE,IAAI,EAAE,CACf,CAAA;qCACF;oCAED,OAAO,CAAC,UAAU,CAAC,cAAc,CAAC,CAAA;oCAClC,OAAO,cAAc,CAAA;iCACtB;gCAED,MAAM,IAAI,KAAK,CAAC,gCAAgC,CAAC,CAAA;4BACnD,CAAC;4BAED,qBAAqB;gCACnB,MAAM,eAAe,GAAG,IAAI,CAAC,kBAAkB,CAC7C,IAAI,CAAC,UAAU,EACf,IAAI,CAAC,WAAW,CACjB,CAAA;gCACD,MAAM,WAAW,GAAG,eAAe,CAAC,CAAC,CAAC,CAAA;gCACtC,MAAM,OAAO,GAAG,IAAA,iBAAU,EAAC,IAAI,CAAC,CAAA;gCAChC,IAAI,IAAA,gCAAyB,EAAC,OAAO,CAAC,EAAE;oCACtC,MAAM,EAAE,OAAO,EAAE,GAAG,OAAO,CAAA;oCAC3B,IAAI,cAAc,GAAG,OAAO,CAAC,GAAG,CAAC,cAAc,CAAC,CAAA;oCAChD,IAAI,CAAC,cAAc,EAAE;wCACnB,IAAI,CAAC,sBAAsB,EAAE,CAAA;wCAC7B,cAAc,GAAG,OAAO,CAAC,GAAG,CAAC,cAAc,CAAC,CAAA;qCAC7C;oCACD,
|
|
1
|
+
{"version":3,"file":"index.js","sourceRoot":"","sources":["../src/index.ts"],"names":[],"mappings":";;;;;AAAA,kEAAyC;AAGzC,6CAA0E;AAM1E,QAAQ;AACR,4EAAuD;AACvD,8EAAyD;AAEzD,8EAAsD;AAEtD,eAAqB,SAAQ,gBAAM;IAAnC;;QACE,SAAI,GAAG,oBAAoB,CAAA;IAwH7B,CAAC;IAtHC,OAAO,CAAC,aAA4B;QAClC,IAAA,4BAAmB,EAAC,aAAa,CAAC,CAAA;QAElC,aAAa,CAAC,mBAAmB,CAC/B,6BAA6B,EAC7B,CAAC,gBAAsC,EAAE,EAAE;YACzC,IAAI,gBAAgB,CAAC,IAAI,KAAK,kBAAkB,EAAE;gBAChD,MAAM,EAAE,UAAU,EAAE,GAAG,gBAA4B,CAAA;gBACnD,MAAM,aAAa,GAAG,UAAU,CAAC,MAAM,CACrC,CAAC,IAA2B,EAAE,EAAE;oBAC9B,MAAM,cAAc,GAAG,IAAI,CAAC,SAAS,CAAA;oBACrC,MAAM,wBAAwB,GAAG,IAAI,CAAC,mBAAmB,CAAA;oBACzD,OAAO;wBACL,OAAO,EAAE;4BACP,sBAAsB;gCACpB,MAAM,OAAO,GAAG,IAAA,iBAAU,EAAC,IAAI,CAAC,CAAA;gCAChC,IAAI,IAAA,gCAAyB,EAAC,OAAO,CAAC,EAAE;oCACtC,IAAI,cAAc,GAAG,OAAO,CAAC,OAAO,CAAC,GAAG,CAAC,cAAc,CAAC,CAAA;oCACxD,IAAI,CAAC,cAAc,EAAE;wCACnB,cAAc,GAAG,OAAO,CAAC,SAAS,CAChC,oBAAoB,EACpB,cAAc,EACd,EAAE,IAAI,EAAE,IAAI,EAAE,CACf,CAAA;qCACF;oCAED,OAAO,CAAC,UAAU,CAAC,cAAc,CAAC,CAAA;oCAClC,OAAO,cAAc,CAAA;iCACtB;gCAED,MAAM,IAAI,KAAK,CAAC,gCAAgC,CAAC,CAAA;4BACnD,CAAC;4BAED,qBAAqB;gCACnB,MAAM,eAAe,GAAG,IAAI,CAAC,kBAAkB,CAC7C,IAAI,CAAC,UAAU,EACf,IAAI,CAAC,WAAW,CACjB,CAAA;gCACD,MAAM,WAAW,GAAG,eAAe,CAAC,CAAC,CAAC,CAAA;gCACtC,MAAM,OAAO,GAAG,IAAA,iBAAU,EAAC,IAAI,CAAC,CAAA;gCAChC,IAAI,IAAA,gCAAyB,EAAC,OAAO,CAAC,EAAE;oCACtC,MAAM,EAAE,OAAO,EAAE,GAAG,OAAO,CAAA;oCAC3B,IAAI,cAAc,GAAG,OAAO,CAAC,GAAG,CAAC,cAAc,CAAC,CAAA;oCAChD,IAAI,CAAC,cAAc,EAAE;wCACnB,IAAI,CAAC,sBAAsB,EAAE,CAAA;wCAC7B,cAAc,GAAG,OAAO,CAAC,GAAG,CAAC,cAAc,CAAC,CAAA;qCAC7C;oCACD,mBAAmB;oCACnB,cAAc,CAAC,WAAW,CAAC,WAAW,CAAC,CAAA;iCACxC;4BACH,CAAC;yBACF;wBACD,KAAK,EAAE;4BACL,SAAS;gCACP,MAAM,YAAY,GAAG;oCACnB,GAAG,cAAc,EAAE;oCACnB,EAAE,IAAI,EAAE,SAAS,EAAE;oCACnB;wCACE,KAAK,EAAE,sBAAsB;wCAC7B,IAAI,EAAE,mBAAa;wCACnB,mBAAmB;wCACnB,OAAO,EAAE,IAAI,CAAC,sBAAsB;qCACrC;oCACD;wCACE,KAAK,EAAE,yBAAyB;wCAChC,IAAI,EAAE,kBAAY;wCAClB,mBAAmB;wCACnB,OAAO,EAAE,IAAI,CAAC,qBAAqB;qCACpC;iCACF,CAAA;gCAED,OAAO,YAAY,CAAA;4BACrB,CAAC;4BAED,mBAAmB;gCACjB,MAAM,sBAAsB,GAAG;oCAC7B,GAAG,wBAAwB,EAAE;oCAC7B;wCACE,KAAK,EAAE,iBAAiB;wCACxB,IAAI,EAAE,kBAAY;wCAClB,OAAO,EAAE,GAAG,EAAE;4CACZ,MAAM,EAAE,UAAU,EAAE,WAAW,EAAE,GAAG,IAAI,CAAA;4CACxC,MAAM,eAAe,GAAG,IAAI,CAAC,kBAAkB,CAC7C,UAAU,EACV,WAAW,CACZ,CAAA;4CACD,MAAM,WAAW,GAAG,eAAe,CAAC,CAAC,CAAC,CAAA;4CACtC,MAAM,OAAO,GAAG,IAAA,iBAAU,EAAC,IAAI,CAAC,CAAA;4CAChC,IAAI,IAAA,gCAAyB,EAAC,OAAO,CAAC,EAAE;gDACtC,MAAM,EAAE,OAAO,EAAE,GAAG,OAAO,CAAA;gDAC3B,IAAI,cAAc,GAAG,OAAO,CAAC,GAAG,CAAC,cAAc,CAAC,CAAA;gDAChD,IAAI,CAAC,cAAc,EAAE;oDACnB,mBAAmB;oDACnB,IAAI,CAAC,sBAAsB,EAAE,CAAA;oDAC7B,cAAc,GAAG,OAAO,CAAC,GAAG,CAAC,cAAc,CAAC,CAAA;iDAC7C;gDACD,mBAAmB;gDACnB,cAAc,CAAC,WAAW,CAAC,WAAW,CAAC,CAAA;6CACxC;wCACH,CAAC;qCACF;iCACF,CAAA;gCAED,OAAO,sBAAsB,CAAA;4BAC/B,CAAC;yBACF;qBACF,CAAA;gBACH,CAAC,CACF,CAEA;gBAAC,gBAA6B,CAAC,UAAU,GAAG,aAAa,CAAA;aAC3D;YACD,OAAO,gBAAgB,CAAA;QACzB,CAAC,CACF,CAAA;IACH,CAAC;IAED,SAAS,CAAC,cAA6B,IAAG,CAAC;CAC5C;AAzHD,4BAyHC"}
|
|
@@ -1,30 +1,14 @@
|
|
|
1
1
|
import React, { useState } from 'react';
|
|
2
2
|
import { observer } from 'mobx-react';
|
|
3
|
-
import { Button,
|
|
4
|
-
import {
|
|
3
|
+
import { Button, DialogContent, DialogActions, Typography } from '@mui/material';
|
|
4
|
+
import { Dialog } from '@jbrowse/core/ui';
|
|
5
|
+
// icons
|
|
5
6
|
import ClearAllIcon from '@mui/icons-material/ClearAll';
|
|
6
|
-
import CloseIcon from '@mui/icons-material/Close';
|
|
7
|
-
const useStyles = makeStyles()(() => ({
|
|
8
|
-
closeDialog: {
|
|
9
|
-
position: 'absolute',
|
|
10
|
-
right: 0,
|
|
11
|
-
top: 0,
|
|
12
|
-
},
|
|
13
|
-
dialogContainer: {
|
|
14
|
-
margin: 15,
|
|
15
|
-
},
|
|
16
|
-
}));
|
|
17
7
|
function ClearBookmarks({ model }) {
|
|
18
|
-
const { classes } = useStyles();
|
|
19
8
|
const [dialogOpen, setDialogOpen] = useState(false);
|
|
20
|
-
const { clearAllBookmarks } = model;
|
|
21
9
|
return (React.createElement(React.Fragment, null,
|
|
22
10
|
React.createElement(Button, { startIcon: React.createElement(ClearAllIcon, null), "aria-label": "clear bookmarks", onClick: () => setDialogOpen(true) }, "Clear"),
|
|
23
|
-
React.createElement(Dialog, { open: dialogOpen, onClose: () => setDialogOpen(false) },
|
|
24
|
-
React.createElement(DialogTitle, null,
|
|
25
|
-
"Clear bookmarks",
|
|
26
|
-
React.createElement(IconButton, { className: classes.closeDialog, "aria-label": "close-dialog", onClick: () => setDialogOpen(false) },
|
|
27
|
-
React.createElement(CloseIcon, null))),
|
|
11
|
+
React.createElement(Dialog, { open: dialogOpen, onClose: () => setDialogOpen(false), title: "Clear bookmarks" },
|
|
28
12
|
React.createElement(DialogContent, null,
|
|
29
13
|
React.createElement(Typography, null, "Clear all bookmarks? Note this will clear bookmarks for all assemblies")),
|
|
30
14
|
React.createElement(DialogActions, null,
|
|
@@ -32,7 +16,7 @@ function ClearBookmarks({ model }) {
|
|
|
32
16
|
setDialogOpen(false);
|
|
33
17
|
} }, "Cancel"),
|
|
34
18
|
React.createElement(Button, { variant: "contained", color: "primary", onClick: () => {
|
|
35
|
-
clearAllBookmarks();
|
|
19
|
+
model.clearAllBookmarks();
|
|
36
20
|
setDialogOpen(false);
|
|
37
21
|
} }, "Confirm")))));
|
|
38
22
|
}
|
|
@@ -1 +1 @@
|
|
|
1
|
-
{"version":3,"file":"ClearBookmarks.js","sourceRoot":"","sources":["../../../src/GridBookmarkWidget/components/ClearBookmarks.tsx"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAE,EAAE,QAAQ,EAAE,MAAM,OAAO,CAAA;AACvC,OAAO,EAAE,QAAQ,EAAE,MAAM,YAAY,CAAA;
|
|
1
|
+
{"version":3,"file":"ClearBookmarks.js","sourceRoot":"","sources":["../../../src/GridBookmarkWidget/components/ClearBookmarks.tsx"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAE,EAAE,QAAQ,EAAE,MAAM,OAAO,CAAA;AACvC,OAAO,EAAE,QAAQ,EAAE,MAAM,YAAY,CAAA;AACrC,OAAO,EAAE,MAAM,EAAE,aAAa,EAAE,aAAa,EAAE,UAAU,EAAE,MAAM,eAAe,CAAA;AAChF,OAAO,EAAE,MAAM,EAAE,MAAM,kBAAkB,CAAA;AAEzC,QAAQ;AACR,OAAO,YAAY,MAAM,8BAA8B,CAAA;AAKvD,SAAS,cAAc,CAAC,EAAE,KAAK,EAAgC;IAC7D,MAAM,CAAC,UAAU,EAAE,aAAa,CAAC,GAAG,QAAQ,CAAC,KAAK,CAAC,CAAA;IACnD,OAAO,CACL;QACE,oBAAC,MAAM,IACL,SAAS,EAAE,oBAAC,YAAY,OAAG,gBAChB,iBAAiB,EAC5B,OAAO,EAAE,GAAG,EAAE,CAAC,aAAa,CAAC,IAAI,CAAC,YAG3B;QACT,oBAAC,MAAM,IACL,IAAI,EAAE,UAAU,EAChB,OAAO,EAAE,GAAG,EAAE,CAAC,aAAa,CAAC,KAAK,CAAC,EACnC,KAAK,EAAC,iBAAiB;YAEvB,oBAAC,aAAa;gBACZ,oBAAC,UAAU,iFAGE,CACC;YAChB,oBAAC,aAAa;gBACZ,oBAAC,MAAM,IACL,OAAO,EAAC,WAAW,EACnB,KAAK,EAAC,WAAW,EACjB,OAAO,EAAE,GAAG,EAAE;wBACZ,aAAa,CAAC,KAAK,CAAC,CAAA;oBACtB,CAAC,aAGM;gBACT,oBAAC,MAAM,IACL,OAAO,EAAC,WAAW,EACnB,KAAK,EAAC,SAAS,EACf,OAAO,EAAE,GAAG,EAAE;wBACZ,KAAK,CAAC,iBAAiB,EAAE,CAAA;wBACzB,aAAa,CAAC,KAAK,CAAC,CAAA;oBACtB,CAAC,cAGM,CACK,CACT,CACR,CACJ,CAAA;AACH,CAAC;AAED,eAAe,QAAQ,CAAC,cAAc,CAAC,CAAA"}
|
|
@@ -1,27 +1,10 @@
|
|
|
1
1
|
import React from 'react';
|
|
2
2
|
import { observer } from 'mobx-react';
|
|
3
3
|
import { assembleLocString } from '@jbrowse/core/util';
|
|
4
|
-
import {
|
|
5
|
-
import {
|
|
6
|
-
import CloseIcon from '@mui/icons-material/Close';
|
|
7
|
-
const useStyles = makeStyles()(() => ({
|
|
8
|
-
closeDialog: {
|
|
9
|
-
position: 'absolute',
|
|
10
|
-
right: 0,
|
|
11
|
-
top: 0,
|
|
12
|
-
},
|
|
13
|
-
dialogContainer: {
|
|
14
|
-
margin: 15,
|
|
15
|
-
},
|
|
16
|
-
}));
|
|
4
|
+
import { Dialog } from '@jbrowse/core/ui';
|
|
5
|
+
import { Button, DialogContent, DialogActions, Typography } from '@mui/material';
|
|
17
6
|
function DeleteBookmarkDialog({ rowNumber, model, onClose, }) {
|
|
18
|
-
|
|
19
|
-
const { removeBookmark } = model;
|
|
20
|
-
return (React.createElement(Dialog, { open: rowNumber !== undefined, onClose: onClose },
|
|
21
|
-
React.createElement(DialogTitle, null,
|
|
22
|
-
"Delete bookmark",
|
|
23
|
-
React.createElement(IconButton, { className: classes.closeDialog, "aria-label": "close-dialog", onClick: onClose },
|
|
24
|
-
React.createElement(CloseIcon, null))),
|
|
7
|
+
return (React.createElement(Dialog, { open: rowNumber !== undefined, onClose: onClose, title: "Delete bookmark" },
|
|
25
8
|
React.createElement(DialogContent, null,
|
|
26
9
|
React.createElement(Typography, null,
|
|
27
10
|
"Remove",
|
|
@@ -32,12 +15,10 @@ function DeleteBookmarkDialog({ rowNumber, model, onClose, }) {
|
|
|
32
15
|
' ',
|
|
33
16
|
"?")),
|
|
34
17
|
React.createElement(DialogActions, null,
|
|
35
|
-
React.createElement(Button, { variant: "contained", color: "secondary", onClick: () =>
|
|
36
|
-
onClose();
|
|
37
|
-
} }, "Cancel"),
|
|
18
|
+
React.createElement(Button, { variant: "contained", color: "secondary", onClick: () => onClose() }, "Cancel"),
|
|
38
19
|
React.createElement(Button, { variant: "contained", color: "primary", onClick: () => {
|
|
39
20
|
if (rowNumber !== undefined) {
|
|
40
|
-
removeBookmark(rowNumber);
|
|
21
|
+
model.removeBookmark(rowNumber);
|
|
41
22
|
onClose();
|
|
42
23
|
}
|
|
43
24
|
} }, "Confirm"))));
|
|
@@ -1 +1 @@
|
|
|
1
|
-
{"version":3,"file":"DeleteBookmark.js","sourceRoot":"","sources":["../../../src/GridBookmarkWidget/components/DeleteBookmark.tsx"],"names":[],"mappings":"AAAA,OAAO,KAAK,MAAM,OAAO,CAAA;AACzB,OAAO,EAAE,QAAQ,EAAE,MAAM,YAAY,CAAA;
|
|
1
|
+
{"version":3,"file":"DeleteBookmark.js","sourceRoot":"","sources":["../../../src/GridBookmarkWidget/components/DeleteBookmark.tsx"],"names":[],"mappings":"AAAA,OAAO,KAAK,MAAM,OAAO,CAAA;AACzB,OAAO,EAAE,QAAQ,EAAE,MAAM,YAAY,CAAA;AACrC,OAAO,EAAE,iBAAiB,EAAE,MAAM,oBAAoB,CAAA;AACtD,OAAO,EAAE,MAAM,EAAE,MAAM,kBAAkB,CAAA;AACzC,OAAO,EAAE,MAAM,EAAE,aAAa,EAAE,aAAa,EAAE,UAAU,EAAE,MAAM,eAAe,CAAA;AAKhF,SAAS,oBAAoB,CAAC,EAC5B,SAAS,EACT,KAAK,EACL,OAAO,GAKR;IACC,OAAO,CACL,oBAAC,MAAM,IACL,IAAI,EAAE,SAAS,KAAK,SAAS,EAC7B,OAAO,EAAE,OAAO,EAChB,KAAK,EAAC,iBAAiB;QAEvB,oBAAC,aAAa;YACZ,oBAAC,UAAU;;gBACF,GAAG;gBACV,kCACG,SAAS,KAAK,SAAS;oBACtB,CAAC,CAAC,iBAAiB,CAAC,KAAK,CAAC,iBAAiB,CAAC,SAAS,CAAC,CAAC;oBACvD,CAAC,CAAC,EAAE,CACD;gBAAC,GAAG;oBAEA,CACC;QAChB,oBAAC,aAAa;YACZ,oBAAC,MAAM,IAAC,OAAO,EAAC,WAAW,EAAC,KAAK,EAAC,WAAW,EAAC,OAAO,EAAE,GAAG,EAAE,CAAC,OAAO,EAAE,aAE7D;YAET,oBAAC,MAAM,IACL,OAAO,EAAC,WAAW,EACnB,KAAK,EAAC,SAAS,EACf,OAAO,EAAE,GAAG,EAAE;oBACZ,IAAI,SAAS,KAAK,SAAS,EAAE;wBAC3B,KAAK,CAAC,cAAc,CAAC,SAAS,CAAC,CAAA;wBAC/B,OAAO,EAAE,CAAA;qBACV;gBACH,CAAC,cAGM,CACK,CACT,CACV,CAAA;AACH,CAAC;AAED,eAAe,QAAQ,CAAC,oBAAoB,CAAC,CAAA"}
|
|
@@ -1,27 +1,14 @@
|
|
|
1
1
|
import React, { useState } from 'react';
|
|
2
2
|
import { observer } from 'mobx-react';
|
|
3
|
-
import {
|
|
3
|
+
import { Button, DialogContent, DialogActions, MenuItem, Select, Typography, } from '@mui/material';
|
|
4
|
+
import { Dialog } from '@jbrowse/core/ui';
|
|
4
5
|
import { makeStyles } from 'tss-react/mui';
|
|
5
|
-
import CloseIcon from '@mui/icons-material/Close';
|
|
6
6
|
import GetAppIcon from '@mui/icons-material/GetApp';
|
|
7
7
|
import { downloadBookmarkFile } from '../utils';
|
|
8
8
|
const useStyles = makeStyles()(() => ({
|
|
9
|
-
closeDialog: {
|
|
10
|
-
position: 'absolute',
|
|
11
|
-
right: 0,
|
|
12
|
-
top: 0,
|
|
13
|
-
},
|
|
14
|
-
dialogContainer: {
|
|
15
|
-
margin: 15,
|
|
16
|
-
},
|
|
17
9
|
flexItem: {
|
|
18
10
|
margin: 5,
|
|
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|
},
|
|
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flexContainer: {
|
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display: 'flex',
|
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justifyContent: 'space-evenly',
|
|
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-
width: 200,
|
|
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|
-
},
|
|
25
12
|
}));
|
|
26
13
|
function DownloadBookmarks({ model }) {
|
|
27
14
|
const { classes } = useStyles();
|
|
@@ -30,10 +17,7 @@ function DownloadBookmarks({ model }) {
|
|
|
30
17
|
const { bookmarkedRegions } = model;
|
|
31
18
|
return (React.createElement(React.Fragment, null,
|
|
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|
React.createElement(Button, { startIcon: React.createElement(GetAppIcon, null), onClick: () => setDialogOpen(true) }, "Download"),
|
|
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|
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React.createElement(Dialog, { open: dialogOpen, onClose: () => setDialogOpen(false) },
|
|
34
|
-
React.createElement(DialogTitle, null,
|
|
35
|
-
React.createElement(IconButton, { className: classes.closeDialog, "aria-label": "close-dialog", onClick: () => setDialogOpen(false) },
|
|
36
|
-
React.createElement(CloseIcon, null))),
|
|
20
|
+
React.createElement(Dialog, { open: dialogOpen, onClose: () => setDialogOpen(false), title: "Download bookmarks" },
|
|
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21
|
React.createElement(DialogContent, null,
|
|
38
22
|
React.createElement(Typography, null, "Format to download"),
|
|
39
23
|
React.createElement(Select, { className: classes.flexItem, "data-testid": "selectFileType", value: fileType, onChange: event => setFileType(event.target.value) },
|
|
@@ -1 +1 @@
|
|
|
1
|
-
{"version":3,"file":"DownloadBookmarks.js","sourceRoot":"","sources":["../../../src/GridBookmarkWidget/components/DownloadBookmarks.tsx"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAE,EAAE,QAAQ,EAAE,MAAM,OAAO,CAAA;AACvC,OAAO,EAAE,QAAQ,EAAE,MAAM,YAAY,CAAA;AAErC,OAAO,EACL,
|
|
1
|
+
{"version":3,"file":"DownloadBookmarks.js","sourceRoot":"","sources":["../../../src/GridBookmarkWidget/components/DownloadBookmarks.tsx"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAE,EAAE,QAAQ,EAAE,MAAM,OAAO,CAAA;AACvC,OAAO,EAAE,QAAQ,EAAE,MAAM,YAAY,CAAA;AAErC,OAAO,EACL,MAAM,EACN,aAAa,EACb,aAAa,EACb,QAAQ,EACR,MAAM,EACN,UAAU,GACX,MAAM,eAAe,CAAA;AACtB,OAAO,EAAE,MAAM,EAAE,MAAM,kBAAkB,CAAA;AACzC,OAAO,EAAE,UAAU,EAAE,MAAM,eAAe,CAAA;AAC1C,OAAO,UAAU,MAAM,4BAA4B,CAAA;AAGnD,OAAO,EAAE,oBAAoB,EAAE,MAAM,UAAU,CAAA;AAE/C,MAAM,SAAS,GAAG,UAAU,EAAE,CAAC,GAAG,EAAE,CAAC,CAAC;IACpC,QAAQ,EAAE;QACR,MAAM,EAAE,CAAC;KACV;CACF,CAAC,CAAC,CAAA;AAEH,SAAS,iBAAiB,CAAC,EAAE,KAAK,EAAgC;IAChE,MAAM,EAAE,OAAO,EAAE,GAAG,SAAS,EAAE,CAAA;IAC/B,MAAM,CAAC,UAAU,EAAE,aAAa,CAAC,GAAG,QAAQ,CAAC,KAAK,CAAC,CAAA;IACnD,MAAM,CAAC,QAAQ,EAAE,WAAW,CAAC,GAAG,QAAQ,CAAC,KAAK,CAAC,CAAA;IAC/C,MAAM,EAAE,iBAAiB,EAAE,GAAG,KAAK,CAAA;IAEnC,OAAO,CACL;QACE,oBAAC,MAAM,IAAC,SAAS,EAAE,oBAAC,UAAU,OAAG,EAAE,OAAO,EAAE,GAAG,EAAE,CAAC,aAAa,CAAC,IAAI,CAAC,eAE5D;QACT,oBAAC,MAAM,IACL,IAAI,EAAE,UAAU,EAChB,OAAO,EAAE,GAAG,EAAE,CAAC,aAAa,CAAC,KAAK,CAAC,EACnC,KAAK,EAAC,oBAAoB;YAE1B,oBAAC,aAAa;gBACZ,oBAAC,UAAU,6BAAgC;gBAC3C,oBAAC,MAAM,IACL,SAAS,EAAE,OAAO,CAAC,QAAQ,iBACf,gBAAgB,EAC5B,KAAK,EAAE,QAAQ,EACf,QAAQ,EAAE,KAAK,CAAC,EAAE,CAAC,WAAW,CAAC,KAAK,CAAC,MAAM,CAAC,KAAK,CAAC;oBAElD,oBAAC,QAAQ,IAAC,KAAK,EAAC,KAAK,UAAe;oBACpC,oBAAC,QAAQ,IAAC,KAAK,EAAC,KAAK,UAAe,CAC7B,CACK;YAChB,oBAAC,aAAa;gBACZ,oBAAC,MAAM,IACL,OAAO,EAAC,WAAW,EACnB,KAAK,EAAC,WAAW,EACjB,OAAO,EAAE,GAAG,EAAE,CAAC,aAAa,CAAC,KAAK,CAAC,aAG5B;gBACT,oBAAC,MAAM,IACL,SAAS,EAAE,OAAO,CAAC,QAAQ,iBACf,gBAAgB,EAC5B,OAAO,EAAC,WAAW,EACnB,KAAK,EAAC,SAAS,EACf,SAAS,EAAE,oBAAC,UAAU,OAAG,EACzB,OAAO,EAAE,GAAG,EAAE;wBACZ,oBAAoB,CAAC,iBAAiB,EAAE,QAAQ,EAAE,KAAK,CAAC,CAAA;wBACxD,aAAa,CAAC,KAAK,CAAC,CAAA;oBACtB,CAAC,eAGM,CACK,CACT,CACR,CACJ,CAAA;AACH,CAAC;AAED,eAAe,QAAQ,CAAC,iBAAiB,CAAC,CAAA"}
|
|
@@ -4,16 +4,12 @@ import { getSession } from '@jbrowse/core/util';
|
|
|
4
4
|
import AssemblySelector from '@jbrowse/core/ui/AssemblySelector';
|
|
5
5
|
import { FileSelector } from '@jbrowse/core/ui';
|
|
6
6
|
import { openLocation } from '@jbrowse/core/util/io';
|
|
7
|
-
import {
|
|
7
|
+
import { Button, DialogContent, DialogActions, Typography } from '@mui/material';
|
|
8
|
+
import { Dialog } from '@jbrowse/core/ui';
|
|
8
9
|
import { makeStyles } from 'tss-react/mui';
|
|
9
|
-
|
|
10
|
+
// icons
|
|
10
11
|
import ImportIcon from '@mui/icons-material/Publish';
|
|
11
12
|
const useStyles = makeStyles()(() => ({
|
|
12
|
-
closeDialog: {
|
|
13
|
-
position: 'absolute',
|
|
14
|
-
right: 0,
|
|
15
|
-
top: 0,
|
|
16
|
-
},
|
|
17
13
|
dialogContainer: {
|
|
18
14
|
margin: 15,
|
|
19
15
|
},
|
|
@@ -31,11 +27,7 @@ function ImportBookmarks({ model, assemblyName, }) {
|
|
|
31
27
|
const [selectedAsm, setSelectedAsm] = useState(assemblyName || assemblyNames[0]);
|
|
32
28
|
return (React.createElement(React.Fragment, null,
|
|
33
29
|
React.createElement(Button, { startIcon: React.createElement(ImportIcon, null), onClick: () => setDialogOpen(true) }, "Import"),
|
|
34
|
-
React.createElement(Dialog, { open: dialogOpen, onClose: () => setDialogOpen(false), maxWidth: "xl" },
|
|
35
|
-
React.createElement(DialogTitle, null,
|
|
36
|
-
"Import bookmarks",
|
|
37
|
-
React.createElement(IconButton, { className: classes.closeDialog, "aria-label": "close-dialog", onClick: () => setDialogOpen(false) },
|
|
38
|
-
React.createElement(CloseIcon, null))),
|
|
30
|
+
React.createElement(Dialog, { open: dialogOpen, onClose: () => setDialogOpen(false), maxWidth: "xl", title: "Import bookmarks" },
|
|
39
31
|
React.createElement(DialogContent, null,
|
|
40
32
|
React.createElement(Typography, null, "Choose a BED format file to import. The first 4 columns will be used"),
|
|
41
33
|
React.createElement(FileSelector, { location: location, setLocation: setLocation, name: "File" }),
|
|
@@ -1 +1 @@
|
|
|
1
|
-
{"version":3,"file":"ImportBookmarks.js","sourceRoot":"","sources":["../../../src/GridBookmarkWidget/components/ImportBookmarks.tsx"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAE,EAAE,QAAQ,EAAE,MAAM,OAAO,CAAA;AACvC,OAAO,EAAE,QAAQ,EAAE,MAAM,YAAY,CAAA;AACrC,OAAO,EAAE,UAAU,EAAE,MAAM,oBAAoB,CAAA;AAC/C,OAAO,gBAAgB,MAAM,mCAAmC,CAAA;AAEhE,OAAO,EAAE,YAAY,EAAE,MAAM,kBAAkB,CAAA;AAC/C,OAAO,EAAE,YAAY,EAAE,MAAM,uBAAuB,CAAA;AACpD,OAAO,
|
|
1
|
+
{"version":3,"file":"ImportBookmarks.js","sourceRoot":"","sources":["../../../src/GridBookmarkWidget/components/ImportBookmarks.tsx"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAE,EAAE,QAAQ,EAAE,MAAM,OAAO,CAAA;AACvC,OAAO,EAAE,QAAQ,EAAE,MAAM,YAAY,CAAA;AACrC,OAAO,EAAE,UAAU,EAAE,MAAM,oBAAoB,CAAA;AAC/C,OAAO,gBAAgB,MAAM,mCAAmC,CAAA;AAEhE,OAAO,EAAE,YAAY,EAAE,MAAM,kBAAkB,CAAA;AAC/C,OAAO,EAAE,YAAY,EAAE,MAAM,uBAAuB,CAAA;AACpD,OAAO,EAAE,MAAM,EAAE,aAAa,EAAE,aAAa,EAAE,UAAU,EAAE,MAAM,eAAe,CAAA;AAChF,OAAO,EAAE,MAAM,EAAE,MAAM,kBAAkB,CAAA;AACzC,OAAO,EAAE,UAAU,EAAE,MAAM,eAAe,CAAA;AAE1C,QAAQ;AACR,OAAO,UAAU,MAAM,6BAA6B,CAAA;AAKpD,MAAM,SAAS,GAAG,UAAU,EAAE,CAAC,GAAG,EAAE,CAAC,CAAC;IACpC,eAAe,EAAE;QACf,MAAM,EAAE,EAAE;KACX;IACD,QAAQ,EAAE;QACR,MAAM,EAAE,CAAC;KACV;CACF,CAAC,CAAC,CAAA;AAEH,SAAS,eAAe,CAAC,EACvB,KAAK,EACL,YAAY,GAIb;IACC,MAAM,EAAE,OAAO,EAAE,GAAG,SAAS,EAAE,CAAA;IAC/B,MAAM,OAAO,GAAG,UAAU,CAAC,KAAK,CAAC,CAAA;IACjC,MAAM,EAAE,aAAa,EAAE,GAAG,OAAO,CAAA;IACjC,MAAM,CAAC,UAAU,EAAE,aAAa,CAAC,GAAG,QAAQ,CAAC,KAAK,CAAC,CAAA;IACnD,MAAM,CAAC,QAAQ,EAAE,WAAW,CAAC,GAAG,QAAQ,EAAgB,CAAA;IACxD,MAAM,CAAC,KAAK,EAAE,QAAQ,CAAC,GAAG,QAAQ,EAAW,CAAA;IAC7C,MAAM,CAAC,WAAW,EAAE,cAAc,CAAC,GAAG,QAAQ,CAC5C,YAAY,IAAI,aAAa,CAAC,CAAC,CAAC,CACjC,CAAA;IAED,OAAO,CACL;QACE,oBAAC,MAAM,IAAC,SAAS,EAAE,oBAAC,UAAU,OAAG,EAAE,OAAO,EAAE,GAAG,EAAE,CAAC,aAAa,CAAC,IAAI,CAAC,aAE5D;QACT,oBAAC,MAAM,IACL,IAAI,EAAE,UAAU,EAChB,OAAO,EAAE,GAAG,EAAE,CAAC,aAAa,CAAC,KAAK,CAAC,EACnC,QAAQ,EAAC,IAAI,EACb,KAAK,EAAC,kBAAkB;YAExB,oBAAC,aAAa;gBACZ,oBAAC,UAAU,+EAEE;gBAEb,oBAAC,YAAY,IACX,QAAQ,EAAE,QAAQ,EAClB,WAAW,EAAE,WAAW,EACxB,IAAI,EAAC,MAAM,GACX;gBACF,oBAAC,UAAU,oDAAuD;gBAClE,oBAAC,gBAAgB,IACf,QAAQ,EAAE,GAAG,CAAC,EAAE,CAAC,cAAc,CAAC,GAAG,CAAC,EACpC,OAAO,EAAE,OAAO,EAChB,QAAQ,EAAE,WAAW,GACrB;gBACD,KAAK,CAAC,CAAC,CAAC,CACP,oBAAC,UAAU,IAAC,KAAK,EAAC,OAAO,EAAC,OAAO,EAAC,IAAI,IAAE,GAAG,KAAK,EAAE,CAAc,CACjE,CAAC,CAAC,CAAC,IAAI,CACM;YAChB,oBAAC,aAAa;gBACZ,oBAAC,MAAM,IACL,OAAO,EAAC,WAAW,EACnB,KAAK,EAAC,WAAW,EACjB,OAAO,EAAE,GAAG,EAAE,CAAC,aAAa,CAAC,KAAK,CAAC,aAG5B;gBACT,oBAAC,MAAM,IACL,SAAS,EAAE,OAAO,CAAC,QAAQ,iBACf,cAAc,EAC1B,OAAO,EAAC,WAAW,EACnB,KAAK,EAAC,SAAS,EACf,QAAQ,EAAE,CAAC,QAAQ,EACnB,SAAS,EAAE,oBAAC,UAAU,OAAG,EACzB,OAAO,EAAE,KAAK,IAAI,EAAE;wBAClB,IAAI;4BACF,IAAI,CAAC,QAAQ,EAAE;gCACb,OAAM;6BACP;4BACD,MAAM,IAAI,GAAG,MAAM,YAAY,CAAC,QAAQ,CAAC,CAAC,QAAQ,CAAC,MAAM,CAAC,CAAA;4BAC1D,MAAM,OAAO,GAAG,IAAI;iCACjB,KAAK,CAAC,YAAY,CAAC;iCACnB,MAAM,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,CAAC,CAAC,IAAI,EAAE,CAAC;iCACvB,MAAM,CACL,CAAC,CAAC,EAAE,CACF,CAAC,CAAC,CAAC,UAAU,CAAC,GAAG,CAAC;gCAClB,CAAC,CAAC,CAAC,UAAU,CAAC,OAAO,CAAC;gCACtB,CAAC,CAAC,CAAC,UAAU,CAAC,SAAS,CAAC,CAC3B;iCACA,GAAG,CAAC,IAAI,CAAC,EAAE;gCACV,MAAM,CAAC,OAAO,EAAE,KAAK,EAAE,GAAG,EAAE,IAAI,CAAC,GAAG,IAAI,CAAC,KAAK,CAAC,IAAI,CAAC,CAAA;gCACpD,OAAO;oCACL,YAAY,EAAE,WAAW;oCACzB,OAAO;oCACP,KAAK,EAAE,CAAC,KAAK;oCACb,GAAG,EAAE,CAAC,GAAG;oCACT,KAAK,EAAE,IAAI,KAAK,GAAG,CAAC,CAAC,CAAC,SAAS,CAAC,CAAC,CAAC,IAAI;iCACvC,CAAA;4BACH,CAAC,CAAC,CAAA;4BACJ,KAAK,CAAC,eAAe,CAAC,OAAO,CAAC,CAAA;4BAC9B,aAAa,CAAC,KAAK,CAAC,CAAA;yBACrB;wBAAC,OAAO,CAAC,EAAE;4BACV,OAAO,CAAC,KAAK,CAAC,CAAC,CAAC,CAAA;4BAChB,QAAQ,CAAC,CAAC,CAAC,CAAA;yBACZ;oBACH,CAAC,aAGM,CACK,CACT,CACR,CACJ,CAAA;AACH,CAAC;AAED,eAAe,QAAQ,CAAC,eAAe,CAAC,CAAA"}
|
|
@@ -18,7 +18,7 @@ export default function f(pluginManager) {
|
|
|
18
18
|
})
|
|
19
19
|
.actions(self => ({
|
|
20
20
|
importBookmarks(regions) {
|
|
21
|
-
self.bookmarkedRegions = cast(self.bookmarkedRegions
|
|
21
|
+
self.bookmarkedRegions = cast([...self.bookmarkedRegions, ...regions]);
|
|
22
22
|
},
|
|
23
23
|
addBookmark(region) {
|
|
24
24
|
self.bookmarkedRegions.push(region);
|
|
@@ -1 +1 @@
|
|
|
1
|
-
{"version":3,"file":"model.js","sourceRoot":"","sources":["../../src/GridBookmarkWidget/model.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,KAAK,EAAE,IAAI,EAAY,MAAM,iBAAiB,CAAA;AAGvD,OAAO,EAAE,MAAM,IAAI,WAAW,EAAE,SAAS,EAAE,MAAM,8BAA8B,CAAA;AAE/E,MAAM,kBAAkB,GAAG,KAAK;KAC7B,OAAO,CACN,WAAW,EACX,KAAK,CAAC,KAAK,CAAC,OAAO,EAAE,EAAE,KAAK,EAAE,KAAK,CAAC,QAAQ,CAAC,KAAK,CAAC,MAAM,EAAE,EAAE,CAAC,EAAE,CAAC,CAClE;KACA,OAAO,CAAC,IAAI,CAAC,EAAE,CAAC,CAAC;IAChB,QAAQ,CAAC,KAAa;QACpB,IAAI,CAAC,KAAK,GAAG,KAAK,CAAA;IACpB,CAAC;CACF,CAAC,CAAC,CAAA;AAEL,MAAM,CAAC,OAAO,UAAU,CAAC,CAAC,aAA4B;IACpD,OAAO,KAAK;SACT,KAAK,CAAC,mBAAmB,EAAE;QAC1B,EAAE,EAAE,SAAS;QACb,IAAI,EAAE,KAAK,CAAC,OAAO,CAAC,oBAAoB,CAAC;QACzC,IAAI,EAAE,KAAK,CAAC,aAAa,CACvB,aAAa,CAAC,gBAAgB,CAAC,MAAM,EAAE,YAAY,CAAC,CACrD;QACD,iBAAiB,EAAE,KAAK,CAAC,KAAK,CAAC,kBAAkB,CAAC;QAClD,qBAAqB,EAAE,EAAE;KAC1B,CAAC;SACD,OAAO,CAAC,IAAI,CAAC,EAAE,CAAC,CAAC;QAChB,eAAe,CAAC,OAAiB;YAC/B,IAAI,CAAC,iBAAiB,GAAG,IAAI,CAAC,IAAI,CAAC,iBAAiB,
|
|
1
|
+
{"version":3,"file":"model.js","sourceRoot":"","sources":["../../src/GridBookmarkWidget/model.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,KAAK,EAAE,IAAI,EAAY,MAAM,iBAAiB,CAAA;AAGvD,OAAO,EAAE,MAAM,IAAI,WAAW,EAAE,SAAS,EAAE,MAAM,8BAA8B,CAAA;AAE/E,MAAM,kBAAkB,GAAG,KAAK;KAC7B,OAAO,CACN,WAAW,EACX,KAAK,CAAC,KAAK,CAAC,OAAO,EAAE,EAAE,KAAK,EAAE,KAAK,CAAC,QAAQ,CAAC,KAAK,CAAC,MAAM,EAAE,EAAE,CAAC,EAAE,CAAC,CAClE;KACA,OAAO,CAAC,IAAI,CAAC,EAAE,CAAC,CAAC;IAChB,QAAQ,CAAC,KAAa;QACpB,IAAI,CAAC,KAAK,GAAG,KAAK,CAAA;IACpB,CAAC;CACF,CAAC,CAAC,CAAA;AAEL,MAAM,CAAC,OAAO,UAAU,CAAC,CAAC,aAA4B;IACpD,OAAO,KAAK;SACT,KAAK,CAAC,mBAAmB,EAAE;QAC1B,EAAE,EAAE,SAAS;QACb,IAAI,EAAE,KAAK,CAAC,OAAO,CAAC,oBAAoB,CAAC;QACzC,IAAI,EAAE,KAAK,CAAC,aAAa,CACvB,aAAa,CAAC,gBAAgB,CAAC,MAAM,EAAE,YAAY,CAAC,CACrD;QACD,iBAAiB,EAAE,KAAK,CAAC,KAAK,CAAC,kBAAkB,CAAC;QAClD,qBAAqB,EAAE,EAAE;KAC1B,CAAC;SACD,OAAO,CAAC,IAAI,CAAC,EAAE,CAAC,CAAC;QAChB,eAAe,CAAC,OAAiB;YAC/B,IAAI,CAAC,iBAAiB,GAAG,IAAI,CAAC,CAAC,GAAG,IAAI,CAAC,iBAAiB,EAAE,GAAG,OAAO,CAAC,CAAC,CAAA;QACxE,CAAC;QACD,WAAW,CAAC,MAAc;YACxB,IAAI,CAAC,iBAAiB,CAAC,IAAI,CAAC,MAAM,CAAC,CAAA;QACrC,CAAC;QACD,cAAc,CAAC,KAAa;YAC1B,IAAI,CAAC,iBAAiB,CAAC,MAAM,CAAC,KAAK,EAAE,CAAC,CAAC,CAAA;QACzC,CAAC;QACD,iBAAiB;YACf,IAAI,CAAC,iBAAiB,CAAC,KAAK,EAAE,CAAA;QAChC,CAAC;QACD,mBAAmB,CAAC,KAAa,EAAE,KAAa;;YAC9C,MAAA,IAAI,CAAC,iBAAiB,CAAC,KAAK,CAAC,0CAAE,QAAQ,CAAC,KAAK,CAAC,CAAA;QAChD,CAAC;QACD,mBAAmB,CAAC,QAAgB;YAClC,IAAI,CAAC,qBAAqB,GAAG,QAAQ,CAAA;QACvC,CAAC;KACF,CAAC,CAAC;SACF,KAAK,CAAC,IAAI,CAAC,EAAE,CAAC,CAAC;QACd,IAAI,gBAAgB;YAClB,OAAO,CACL,IAAI,CAAC,qBAAqB;gBAC1B,CAAC,IAAI,CAAC,iBAAiB,CAAC,MAAM;oBAC5B,CAAC,CAAC,IAAI,CAAC,iBAAiB,CAAC,CAAC,CAAC,CAAC,YAAY;oBACxC,CAAC,CAAC,EAAE,CAAC,CACR,CAAA;QACH,CAAC;QACD,IAAI,UAAU;YACZ,OAAO;gBACL,GAAG,IAAI,GAAG,CAAC,IAAI,CAAC,iBAAiB,CAAC,GAAG,CAAC,MAAM,CAAC,EAAE,CAAC,MAAM,CAAC,YAAY,CAAC,CAAC;aACtE,CAAA;QACH,CAAC;KACF,CAAC,CAAC,CAAA;AACP,CAAC"}
|
|
@@ -9,7 +9,7 @@ export async function navToBookmark(locString, views, model) {
|
|
|
9
9
|
const newViewId = `${model.id}_${selectedAssembly}`;
|
|
10
10
|
let view = (views.find(v => v.type === 'LinearGenomeView' && v.id === newViewId) ||
|
|
11
11
|
views.find(v => v.type === 'LinearGenomeView' &&
|
|
12
|
-
// @ts-
|
|
12
|
+
// @ts-expect-error
|
|
13
13
|
v.assemblyNames[0] === selectedAssembly));
|
|
14
14
|
if (!view) {
|
|
15
15
|
view = session.addView('LinearGenomeView', {
|
|
@@ -49,13 +49,9 @@ export function downloadBookmarkFile(bookmarkedRegions, fileFormat, model) {
|
|
|
49
49
|
? 'text/x-bed;charset=utf-8'
|
|
50
50
|
: 'text/tab-separated-values;charset=utf-8',
|
|
51
51
|
});
|
|
52
|
-
|
|
53
|
-
|
|
54
|
-
|
|
55
|
-
}
|
|
56
|
-
else {
|
|
57
|
-
fileName = 'jbrowse_bookmarks.tsv';
|
|
58
|
-
}
|
|
52
|
+
const fileName = fileFormat === 'BED'
|
|
53
|
+
? `jbrowse_bookmarks_${selectedAssembly}.bed`
|
|
54
|
+
: 'jbrowse_bookmarks.tsv';
|
|
59
55
|
saveAs(blob, fileName);
|
|
60
56
|
}
|
|
61
57
|
//# sourceMappingURL=utils.js.map
|
|
@@ -1 +1 @@
|
|
|
1
|
-
{"version":3,"file":"utils.js","sourceRoot":"","sources":["../../src/GridBookmarkWidget/utils.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,MAAM,EAAE,MAAM,YAAY,CAAA;AACnC,OAAO,EAAE,UAAU,EAAE,iBAAiB,EAAE,MAAM,oBAAoB,CAAA;AAYlE,MAAM,CAAC,KAAK,UAAU,aAAa,CACjC,SAAiB,EACjB,KAA0B,EAC1B,KAAwB;IAExB,MAAM,OAAO,GAAG,UAAU,CAAC,KAAK,CAAC,CAAA;IACjC,IAAI;QACF,0EAA0E;QAC1E,iEAAiE;QACjE,MAAM,EAAE,gBAAgB,EAAE,GAAG,KAAK,CAAA;QAClC,MAAM,SAAS,GAAG,GAAG,KAAK,CAAC,EAAE,IAAI,gBAAgB,EAAE,CAAA;QACnD,IAAI,IAAI,GAAG,CAAC,KAAK,CAAC,IAAI,CACpB,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,IAAI,KAAK,kBAAkB,IAAI,CAAC,CAAC,EAAE,KAAK,SAAS,CACzD;YACC,KAAK,CAAC,IAAI,CACR,CAAC,CAAC,EAAE,CACF,CAAC,CAAC,IAAI,KAAK,kBAAkB;gBAC7B,
|
|
1
|
+
{"version":3,"file":"utils.js","sourceRoot":"","sources":["../../src/GridBookmarkWidget/utils.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,MAAM,EAAE,MAAM,YAAY,CAAA;AACnC,OAAO,EAAE,UAAU,EAAE,iBAAiB,EAAE,MAAM,oBAAoB,CAAA;AAYlE,MAAM,CAAC,KAAK,UAAU,aAAa,CACjC,SAAiB,EACjB,KAA0B,EAC1B,KAAwB;IAExB,MAAM,OAAO,GAAG,UAAU,CAAC,KAAK,CAAC,CAAA;IACjC,IAAI;QACF,0EAA0E;QAC1E,iEAAiE;QACjE,MAAM,EAAE,gBAAgB,EAAE,GAAG,KAAK,CAAA;QAClC,MAAM,SAAS,GAAG,GAAG,KAAK,CAAC,EAAE,IAAI,gBAAgB,EAAE,CAAA;QACnD,IAAI,IAAI,GAAG,CAAC,KAAK,CAAC,IAAI,CACpB,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,IAAI,KAAK,kBAAkB,IAAI,CAAC,CAAC,EAAE,KAAK,SAAS,CACzD;YACC,KAAK,CAAC,IAAI,CACR,CAAC,CAAC,EAAE,CACF,CAAC,CAAC,IAAI,KAAK,kBAAkB;gBAC7B,mBAAmB;gBACnB,CAAC,CAAC,aAAa,CAAC,CAAC,CAAC,KAAK,gBAAgB,CAC1C,CAAa,CAAA;QAEhB,IAAI,CAAC,IAAI,EAAE;YACT,IAAI,GAAG,OAAO,CAAC,OAAO,CAAC,kBAAkB,EAAE;gBACzC,EAAE,EAAE,SAAS;aACd,CAAQ,CAAA;SACV;QACD,MAAM,IAAI,CAAC,cAAc,CAAC,SAAS,EAAE,gBAAgB,CAAC,CAAA;KACvD;IAAC,OAAO,CAAC,EAAE;QACV,OAAO,CAAC,KAAK,CAAC,CAAC,CAAC,CAAA;QAChB,OAAO,CAAC,MAAM,CAAC,GAAG,CAAC,EAAE,EAAE,OAAO,CAAC,CAAA;KAChC;AACH,CAAC;AAED,MAAM,UAAU,oBAAoB,CAClC,iBAAkC,EAClC,UAAkB,EAClB,KAAwB;IAExB,MAAM,EAAE,gBAAgB,EAAE,GAAG,KAAK,CAAA;IAClC,MAAM,UAAU,GACd,UAAU,KAAK,KAAK;QAClB,CAAC,CAAC,wDAAwD;QAC1D,CAAC,CAAC,EAAE,CAAA;IAER,MAAM,YAAY,GAAG,iBAAiB;SACnC,GAAG,CAAC,CAAC,CAAC,EAAE;QACP,MAAM,EAAE,KAAK,EAAE,GAAG,CAAC,CAAA;QACnB,MAAM,QAAQ,GAAG,KAAK,KAAK,EAAE,CAAC,CAAC,CAAC,GAAG,CAAC,CAAC,CAAC,KAAK,CAAA;QAC3C,MAAM,SAAS,GAAG,iBAAiB,CAAC,CAAC,CAAC,CAAA;QAEtC,IAAI,UAAU,KAAK,KAAK,EAAE;YACxB,IAAI,CAAC,CAAC,YAAY,KAAK,gBAAgB,IAAI,gBAAgB,KAAK,KAAK,EAAE;gBACrE,OAAO,GAAG,CAAC,CAAC,OAAO,KAAK,CAAC,CAAC,KAAK,KAAK,CAAC,CAAC,GAAG,KAAK,QAAQ,IAAI,CAAA;aAC3D;YACD,OAAO,EAAE,CAAA;SACV;aAAM;YACL,OAAO,GAAG,CAAC,CAAC,OAAO,KAAK,CAAC,CAAC,KAAK,GAAG,CAAC,KAAK,CAAC,CAAC,GAAG,KAAK,QAAQ,KACxD,CAAC,CAAC,YACJ,KAAK,SAAS,IAAI,CAAA;SACnB;IACH,CAAC,CAAC;SACD,MAAM,CAAC,CAAC,CAAC,EAAE,CAAC,EAAE,EAAE,CAAC,CAAC,GAAG,CAAC,EAAE,UAAU,CAAC,CAAA;IAEtC,MAAM,IAAI,GAAG,IAAI,IAAI,CAAC,CAAC,YAAY,IAAI,EAAE,CAAC,EAAE;QAC1C,IAAI,EACF,UAAU,KAAK,KAAK;YAClB,CAAC,CAAC,0BAA0B;YAC5B,CAAC,CAAC,yCAAyC;KAChD,CAAC,CAAA;IAEF,MAAM,QAAQ,GACZ,UAAU,KAAK,KAAK;QAClB,CAAC,CAAC,qBAAqB,gBAAgB,MAAM;QAC7C,CAAC,CAAC,uBAAuB,CAAA;IAE7B,MAAM,CAAC,IAAI,EAAE,QAAQ,CAAC,CAAA;AACxB,CAAC"}
|
package/esm/index.js
CHANGED
|
@@ -42,7 +42,7 @@ export default class extends Plugin {
|
|
|
42
42
|
this.activateBookmarkWidget();
|
|
43
43
|
bookmarkWidget = widgets.get('GridBookmark');
|
|
44
44
|
}
|
|
45
|
-
// @ts-
|
|
45
|
+
// @ts-expect-error
|
|
46
46
|
bookmarkWidget.addBookmark(firstRegion);
|
|
47
47
|
}
|
|
48
48
|
},
|
|
@@ -55,13 +55,13 @@ export default class extends Plugin {
|
|
|
55
55
|
{
|
|
56
56
|
label: 'Open bookmark widget',
|
|
57
57
|
icon: BookmarksIcon,
|
|
58
|
-
// @ts-
|
|
58
|
+
// @ts-expect-error
|
|
59
59
|
onClick: self.activateBookmarkWidget,
|
|
60
60
|
},
|
|
61
61
|
{
|
|
62
62
|
label: 'Bookmark current region',
|
|
63
63
|
icon: BookmarkIcon,
|
|
64
|
-
// @ts-
|
|
64
|
+
// @ts-expect-error
|
|
65
65
|
onClick: self.bookmarkCurrentRegion,
|
|
66
66
|
},
|
|
67
67
|
];
|
|
@@ -82,11 +82,11 @@ export default class extends Plugin {
|
|
|
82
82
|
const { widgets } = session;
|
|
83
83
|
let bookmarkWidget = widgets.get('GridBookmark');
|
|
84
84
|
if (!bookmarkWidget) {
|
|
85
|
-
// @ts-
|
|
85
|
+
// @ts-expect-error
|
|
86
86
|
self.activateBookmarkWidget();
|
|
87
87
|
bookmarkWidget = widgets.get('GridBookmark');
|
|
88
88
|
}
|
|
89
|
-
// @ts-
|
|
89
|
+
// @ts-expect-error
|
|
90
90
|
bookmarkWidget.addBookmark(firstRegion);
|
|
91
91
|
}
|
|
92
92
|
},
|
package/esm/index.js.map
CHANGED
|
@@ -1 +1 @@
|
|
|
1
|
-
{"version":3,"file":"index.js","sourceRoot":"","sources":["../src/index.ts"],"names":[],"mappings":"AAAA,OAAO,MAAM,MAAM,sBAAsB,CAAA;AAGzC,OAAO,EAAE,UAAU,EAAE,yBAAyB,EAAE,MAAM,oBAAoB,CAAA;AAM1E,QAAQ;AACR,OAAO,YAAY,MAAM,8BAA8B,CAAA;AACvD,OAAO,aAAa,MAAM,+BAA+B,CAAA;AAEzD,OAAO,mBAAmB,MAAM,sBAAsB,CAAA;AAEtD,MAAM,CAAC,OAAO,MAAO,SAAQ,MAAM;IAAnC;;QACE,SAAI,GAAG,oBAAoB,CAAA;IAwH7B,CAAC;IAtHC,OAAO,CAAC,aAA4B;QAClC,mBAAmB,CAAC,aAAa,CAAC,CAAA;QAElC,aAAa,CAAC,mBAAmB,CAC/B,6BAA6B,EAC7B,CAAC,gBAAsC,EAAE,EAAE;YACzC,IAAI,gBAAgB,CAAC,IAAI,KAAK,kBAAkB,EAAE;gBAChD,MAAM,EAAE,UAAU,EAAE,GAAG,gBAA4B,CAAA;gBACnD,MAAM,aAAa,GAAG,UAAU,CAAC,MAAM,CACrC,CAAC,IAA2B,EAAE,EAAE;oBAC9B,MAAM,cAAc,GAAG,IAAI,CAAC,SAAS,CAAA;oBACrC,MAAM,wBAAwB,GAAG,IAAI,CAAC,mBAAmB,CAAA;oBACzD,OAAO;wBACL,OAAO,EAAE;4BACP,sBAAsB;gCACpB,MAAM,OAAO,GAAG,UAAU,CAAC,IAAI,CAAC,CAAA;gCAChC,IAAI,yBAAyB,CAAC,OAAO,CAAC,EAAE;oCACtC,IAAI,cAAc,GAAG,OAAO,CAAC,OAAO,CAAC,GAAG,CAAC,cAAc,CAAC,CAAA;oCACxD,IAAI,CAAC,cAAc,EAAE;wCACnB,cAAc,GAAG,OAAO,CAAC,SAAS,CAChC,oBAAoB,EACpB,cAAc,EACd,EAAE,IAAI,EAAE,IAAI,EAAE,CACf,CAAA;qCACF;oCAED,OAAO,CAAC,UAAU,CAAC,cAAc,CAAC,CAAA;oCAClC,OAAO,cAAc,CAAA;iCACtB;gCAED,MAAM,IAAI,KAAK,CAAC,gCAAgC,CAAC,CAAA;4BACnD,CAAC;4BAED,qBAAqB;gCACnB,MAAM,eAAe,GAAG,IAAI,CAAC,kBAAkB,CAC7C,IAAI,CAAC,UAAU,EACf,IAAI,CAAC,WAAW,CACjB,CAAA;gCACD,MAAM,WAAW,GAAG,eAAe,CAAC,CAAC,CAAC,CAAA;gCACtC,MAAM,OAAO,GAAG,UAAU,CAAC,IAAI,CAAC,CAAA;gCAChC,IAAI,yBAAyB,CAAC,OAAO,CAAC,EAAE;oCACtC,MAAM,EAAE,OAAO,EAAE,GAAG,OAAO,CAAA;oCAC3B,IAAI,cAAc,GAAG,OAAO,CAAC,GAAG,CAAC,cAAc,CAAC,CAAA;oCAChD,IAAI,CAAC,cAAc,EAAE;wCACnB,IAAI,CAAC,sBAAsB,EAAE,CAAA;wCAC7B,cAAc,GAAG,OAAO,CAAC,GAAG,CAAC,cAAc,CAAC,CAAA;qCAC7C;oCACD,
|
|
1
|
+
{"version":3,"file":"index.js","sourceRoot":"","sources":["../src/index.ts"],"names":[],"mappings":"AAAA,OAAO,MAAM,MAAM,sBAAsB,CAAA;AAGzC,OAAO,EAAE,UAAU,EAAE,yBAAyB,EAAE,MAAM,oBAAoB,CAAA;AAM1E,QAAQ;AACR,OAAO,YAAY,MAAM,8BAA8B,CAAA;AACvD,OAAO,aAAa,MAAM,+BAA+B,CAAA;AAEzD,OAAO,mBAAmB,MAAM,sBAAsB,CAAA;AAEtD,MAAM,CAAC,OAAO,MAAO,SAAQ,MAAM;IAAnC;;QACE,SAAI,GAAG,oBAAoB,CAAA;IAwH7B,CAAC;IAtHC,OAAO,CAAC,aAA4B;QAClC,mBAAmB,CAAC,aAAa,CAAC,CAAA;QAElC,aAAa,CAAC,mBAAmB,CAC/B,6BAA6B,EAC7B,CAAC,gBAAsC,EAAE,EAAE;YACzC,IAAI,gBAAgB,CAAC,IAAI,KAAK,kBAAkB,EAAE;gBAChD,MAAM,EAAE,UAAU,EAAE,GAAG,gBAA4B,CAAA;gBACnD,MAAM,aAAa,GAAG,UAAU,CAAC,MAAM,CACrC,CAAC,IAA2B,EAAE,EAAE;oBAC9B,MAAM,cAAc,GAAG,IAAI,CAAC,SAAS,CAAA;oBACrC,MAAM,wBAAwB,GAAG,IAAI,CAAC,mBAAmB,CAAA;oBACzD,OAAO;wBACL,OAAO,EAAE;4BACP,sBAAsB;gCACpB,MAAM,OAAO,GAAG,UAAU,CAAC,IAAI,CAAC,CAAA;gCAChC,IAAI,yBAAyB,CAAC,OAAO,CAAC,EAAE;oCACtC,IAAI,cAAc,GAAG,OAAO,CAAC,OAAO,CAAC,GAAG,CAAC,cAAc,CAAC,CAAA;oCACxD,IAAI,CAAC,cAAc,EAAE;wCACnB,cAAc,GAAG,OAAO,CAAC,SAAS,CAChC,oBAAoB,EACpB,cAAc,EACd,EAAE,IAAI,EAAE,IAAI,EAAE,CACf,CAAA;qCACF;oCAED,OAAO,CAAC,UAAU,CAAC,cAAc,CAAC,CAAA;oCAClC,OAAO,cAAc,CAAA;iCACtB;gCAED,MAAM,IAAI,KAAK,CAAC,gCAAgC,CAAC,CAAA;4BACnD,CAAC;4BAED,qBAAqB;gCACnB,MAAM,eAAe,GAAG,IAAI,CAAC,kBAAkB,CAC7C,IAAI,CAAC,UAAU,EACf,IAAI,CAAC,WAAW,CACjB,CAAA;gCACD,MAAM,WAAW,GAAG,eAAe,CAAC,CAAC,CAAC,CAAA;gCACtC,MAAM,OAAO,GAAG,UAAU,CAAC,IAAI,CAAC,CAAA;gCAChC,IAAI,yBAAyB,CAAC,OAAO,CAAC,EAAE;oCACtC,MAAM,EAAE,OAAO,EAAE,GAAG,OAAO,CAAA;oCAC3B,IAAI,cAAc,GAAG,OAAO,CAAC,GAAG,CAAC,cAAc,CAAC,CAAA;oCAChD,IAAI,CAAC,cAAc,EAAE;wCACnB,IAAI,CAAC,sBAAsB,EAAE,CAAA;wCAC7B,cAAc,GAAG,OAAO,CAAC,GAAG,CAAC,cAAc,CAAC,CAAA;qCAC7C;oCACD,mBAAmB;oCACnB,cAAc,CAAC,WAAW,CAAC,WAAW,CAAC,CAAA;iCACxC;4BACH,CAAC;yBACF;wBACD,KAAK,EAAE;4BACL,SAAS;gCACP,MAAM,YAAY,GAAG;oCACnB,GAAG,cAAc,EAAE;oCACnB,EAAE,IAAI,EAAE,SAAS,EAAE;oCACnB;wCACE,KAAK,EAAE,sBAAsB;wCAC7B,IAAI,EAAE,aAAa;wCACnB,mBAAmB;wCACnB,OAAO,EAAE,IAAI,CAAC,sBAAsB;qCACrC;oCACD;wCACE,KAAK,EAAE,yBAAyB;wCAChC,IAAI,EAAE,YAAY;wCAClB,mBAAmB;wCACnB,OAAO,EAAE,IAAI,CAAC,qBAAqB;qCACpC;iCACF,CAAA;gCAED,OAAO,YAAY,CAAA;4BACrB,CAAC;4BAED,mBAAmB;gCACjB,MAAM,sBAAsB,GAAG;oCAC7B,GAAG,wBAAwB,EAAE;oCAC7B;wCACE,KAAK,EAAE,iBAAiB;wCACxB,IAAI,EAAE,YAAY;wCAClB,OAAO,EAAE,GAAG,EAAE;4CACZ,MAAM,EAAE,UAAU,EAAE,WAAW,EAAE,GAAG,IAAI,CAAA;4CACxC,MAAM,eAAe,GAAG,IAAI,CAAC,kBAAkB,CAC7C,UAAU,EACV,WAAW,CACZ,CAAA;4CACD,MAAM,WAAW,GAAG,eAAe,CAAC,CAAC,CAAC,CAAA;4CACtC,MAAM,OAAO,GAAG,UAAU,CAAC,IAAI,CAAC,CAAA;4CAChC,IAAI,yBAAyB,CAAC,OAAO,CAAC,EAAE;gDACtC,MAAM,EAAE,OAAO,EAAE,GAAG,OAAO,CAAA;gDAC3B,IAAI,cAAc,GAAG,OAAO,CAAC,GAAG,CAAC,cAAc,CAAC,CAAA;gDAChD,IAAI,CAAC,cAAc,EAAE;oDACnB,mBAAmB;oDACnB,IAAI,CAAC,sBAAsB,EAAE,CAAA;oDAC7B,cAAc,GAAG,OAAO,CAAC,GAAG,CAAC,cAAc,CAAC,CAAA;iDAC7C;gDACD,mBAAmB;gDACnB,cAAc,CAAC,WAAW,CAAC,WAAW,CAAC,CAAA;6CACxC;wCACH,CAAC;qCACF;iCACF,CAAA;gCAED,OAAO,sBAAsB,CAAA;4BAC/B,CAAC;yBACF;qBACF,CAAA;gBACH,CAAC,CACF,CAEA;gBAAC,gBAA6B,CAAC,UAAU,GAAG,aAAa,CAAA;aAC3D;YACD,OAAO,gBAAgB,CAAA;QACzB,CAAC,CACF,CAAA;IACH,CAAC;IAED,SAAS,CAAC,cAA6B,IAAG,CAAC;CAC5C"}
|
package/package.json
CHANGED
|
@@ -1,6 +1,6 @@
|
|
|
1
1
|
{
|
|
2
2
|
"name": "@jbrowse/plugin-grid-bookmark",
|
|
3
|
-
"version": "2.
|
|
3
|
+
"version": "2.4.1",
|
|
4
4
|
"description": "JBrowse 2 grid bookmark widget",
|
|
5
5
|
"keywords": [
|
|
6
6
|
"jbrowse",
|
|
@@ -59,5 +59,5 @@
|
|
|
59
59
|
"distModule": "esm/index.js",
|
|
60
60
|
"srcModule": "src/index.ts",
|
|
61
61
|
"module": "esm/index.js",
|
|
62
|
-
"gitHead": "
|
|
62
|
+
"gitHead": "747c50c4edc0184827efa4f8dfc576ca9a72caeb"
|
|
63
63
|
}
|
|
@@ -1,38 +1,16 @@
|
|
|
1
1
|
import React, { useState } from 'react'
|
|
2
2
|
import { observer } from 'mobx-react'
|
|
3
|
+
import { Button, DialogContent, DialogActions, Typography } from '@mui/material'
|
|
4
|
+
import { Dialog } from '@jbrowse/core/ui'
|
|
3
5
|
|
|
4
|
-
|
|
5
|
-
Button,
|
|
6
|
-
IconButton,
|
|
7
|
-
Dialog,
|
|
8
|
-
DialogTitle,
|
|
9
|
-
DialogContent,
|
|
10
|
-
DialogActions,
|
|
11
|
-
Typography,
|
|
12
|
-
} from '@mui/material'
|
|
13
|
-
import { makeStyles } from 'tss-react/mui'
|
|
6
|
+
// icons
|
|
14
7
|
import ClearAllIcon from '@mui/icons-material/ClearAll'
|
|
15
|
-
import CloseIcon from '@mui/icons-material/Close'
|
|
16
8
|
|
|
9
|
+
// locals
|
|
17
10
|
import { GridBookmarkModel } from '../model'
|
|
18
11
|
|
|
19
|
-
const useStyles = makeStyles()(() => ({
|
|
20
|
-
closeDialog: {
|
|
21
|
-
position: 'absolute',
|
|
22
|
-
right: 0,
|
|
23
|
-
top: 0,
|
|
24
|
-
},
|
|
25
|
-
dialogContainer: {
|
|
26
|
-
margin: 15,
|
|
27
|
-
},
|
|
28
|
-
}))
|
|
29
|
-
|
|
30
12
|
function ClearBookmarks({ model }: { model: GridBookmarkModel }) {
|
|
31
|
-
const { classes } = useStyles()
|
|
32
13
|
const [dialogOpen, setDialogOpen] = useState(false)
|
|
33
|
-
|
|
34
|
-
const { clearAllBookmarks } = model
|
|
35
|
-
|
|
36
14
|
return (
|
|
37
15
|
<>
|
|
38
16
|
<Button
|
|
@@ -42,17 +20,11 @@ function ClearBookmarks({ model }: { model: GridBookmarkModel }) {
|
|
|
42
20
|
>
|
|
43
21
|
Clear
|
|
44
22
|
</Button>
|
|
45
|
-
<Dialog
|
|
46
|
-
|
|
47
|
-
|
|
48
|
-
|
|
49
|
-
|
|
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>
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Clear all bookmarks? Note this will clear bookmarks for all
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@@ -73,7 +45,7 @@ function ClearBookmarks({ model }: { model: GridBookmarkModel }) {
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clearAllBookmarks()
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@@ -1,33 +1,12 @@
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import React from 'react'
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2
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import { observer } from 'mobx-react'
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-
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import { Button, DialogContent, DialogActions, Typography } from '@mui/material'
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IconButton,
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Button,
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Dialog,
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DialogTitle,
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Typography,
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} from '@mui/material'
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// locals
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function DeleteBookmarkDialog({
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rowNumber,
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model,
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@@ -37,22 +16,12 @@ function DeleteBookmarkDialog({
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model: GridBookmarkModel
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onClose: () => void
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}) {
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-
const { classes } = useStyles()
|
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-
|
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const { removeBookmark } = model
|
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return (
|
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<Dialog
|
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-
|
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|
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aria-label="close-dialog"
|
|
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-
onClick={onClose}
|
|
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>
|
|
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|
-
<CloseIcon />
|
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</IconButton>
|
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-
</DialogTitle>
|
|
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|
+
<Dialog
|
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21
|
+
open={rowNumber !== undefined}
|
|
22
|
+
onClose={onClose}
|
|
23
|
+
title="Delete bookmark"
|
|
24
|
+
>
|
|
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25
|
<DialogContent>
|
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57
26
|
<Typography>
|
|
58
27
|
Remove{' '}
|
|
@@ -65,13 +34,7 @@ function DeleteBookmarkDialog({
|
|
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65
34
|
</Typography>
|
|
66
35
|
</DialogContent>
|
|
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36
|
<DialogActions>
|
|
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|
-
<Button
|
|
69
|
-
variant="contained"
|
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|
-
color="secondary"
|
|
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|
-
onClick={() => {
|
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|
-
onClose()
|
|
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|
-
}}
|
|
74
|
-
>
|
|
37
|
+
<Button variant="contained" color="secondary" onClick={() => onClose()}>
|
|
75
38
|
Cancel
|
|
76
39
|
</Button>
|
|
77
40
|
|
|
@@ -80,7 +43,7 @@ function DeleteBookmarkDialog({
|
|
|
80
43
|
color="primary"
|
|
81
44
|
onClick={() => {
|
|
82
45
|
if (rowNumber !== undefined) {
|
|
83
|
-
removeBookmark(rowNumber)
|
|
46
|
+
model.removeBookmark(rowNumber)
|
|
84
47
|
onClose()
|
|
85
48
|
}
|
|
86
49
|
}}
|
|
@@ -2,40 +2,24 @@ import React, { useState } from 'react'
|
|
|
2
2
|
import { observer } from 'mobx-react'
|
|
3
3
|
|
|
4
4
|
import {
|
|
5
|
-
IconButton,
|
|
6
5
|
Button,
|
|
7
|
-
Dialog,
|
|
8
|
-
DialogTitle,
|
|
9
6
|
DialogContent,
|
|
10
7
|
DialogActions,
|
|
11
8
|
MenuItem,
|
|
12
9
|
Select,
|
|
13
10
|
Typography,
|
|
14
11
|
} from '@mui/material'
|
|
12
|
+
import { Dialog } from '@jbrowse/core/ui'
|
|
15
13
|
import { makeStyles } from 'tss-react/mui'
|
|
16
|
-
import CloseIcon from '@mui/icons-material/Close'
|
|
17
14
|
import GetAppIcon from '@mui/icons-material/GetApp'
|
|
18
15
|
|
|
19
16
|
import { GridBookmarkModel } from '../model'
|
|
20
17
|
import { downloadBookmarkFile } from '../utils'
|
|
21
18
|
|
|
22
19
|
const useStyles = makeStyles()(() => ({
|
|
23
|
-
closeDialog: {
|
|
24
|
-
position: 'absolute',
|
|
25
|
-
right: 0,
|
|
26
|
-
top: 0,
|
|
27
|
-
},
|
|
28
|
-
dialogContainer: {
|
|
29
|
-
margin: 15,
|
|
30
|
-
},
|
|
31
20
|
flexItem: {
|
|
32
21
|
margin: 5,
|
|
33
22
|
},
|
|
34
|
-
flexContainer: {
|
|
35
|
-
display: 'flex',
|
|
36
|
-
justifyContent: 'space-evenly',
|
|
37
|
-
width: 200,
|
|
38
|
-
},
|
|
39
23
|
}))
|
|
40
24
|
|
|
41
25
|
function DownloadBookmarks({ model }: { model: GridBookmarkModel }) {
|
|
@@ -49,23 +33,18 @@ function DownloadBookmarks({ model }: { model: GridBookmarkModel }) {
|
|
|
49
33
|
<Button startIcon={<GetAppIcon />} onClick={() => setDialogOpen(true)}>
|
|
50
34
|
Download
|
|
51
35
|
</Button>
|
|
52
|
-
<Dialog
|
|
53
|
-
|
|
54
|
-
|
|
55
|
-
|
|
56
|
-
|
|
57
|
-
onClick={() => setDialogOpen(false)}
|
|
58
|
-
>
|
|
59
|
-
<CloseIcon />
|
|
60
|
-
</IconButton>
|
|
61
|
-
</DialogTitle>
|
|
36
|
+
<Dialog
|
|
37
|
+
open={dialogOpen}
|
|
38
|
+
onClose={() => setDialogOpen(false)}
|
|
39
|
+
title="Download bookmarks"
|
|
40
|
+
>
|
|
62
41
|
<DialogContent>
|
|
63
42
|
<Typography>Format to download</Typography>
|
|
64
43
|
<Select
|
|
65
44
|
className={classes.flexItem}
|
|
66
45
|
data-testid="selectFileType"
|
|
67
46
|
value={fileType}
|
|
68
|
-
onChange={event => setFileType(event.target.value
|
|
47
|
+
onChange={event => setFileType(event.target.value)}
|
|
69
48
|
>
|
|
70
49
|
<MenuItem value="BED">BED</MenuItem>
|
|
71
50
|
<MenuItem value="TSV">TSV</MenuItem>
|
|
@@ -5,26 +5,17 @@ import AssemblySelector from '@jbrowse/core/ui/AssemblySelector'
|
|
|
5
5
|
import { FileLocation } from '@jbrowse/core/util/types'
|
|
6
6
|
import { FileSelector } from '@jbrowse/core/ui'
|
|
7
7
|
import { openLocation } from '@jbrowse/core/util/io'
|
|
8
|
-
import {
|
|
9
|
-
|
|
10
|
-
Button,
|
|
11
|
-
Dialog,
|
|
12
|
-
DialogTitle,
|
|
13
|
-
DialogContent,
|
|
14
|
-
DialogActions,
|
|
15
|
-
Typography,
|
|
16
|
-
} from '@mui/material'
|
|
8
|
+
import { Button, DialogContent, DialogActions, Typography } from '@mui/material'
|
|
9
|
+
import { Dialog } from '@jbrowse/core/ui'
|
|
17
10
|
import { makeStyles } from 'tss-react/mui'
|
|
18
|
-
|
|
11
|
+
|
|
12
|
+
// icons
|
|
19
13
|
import ImportIcon from '@mui/icons-material/Publish'
|
|
14
|
+
|
|
15
|
+
// locals
|
|
20
16
|
import { GridBookmarkModel } from '../model'
|
|
21
17
|
|
|
22
18
|
const useStyles = makeStyles()(() => ({
|
|
23
|
-
closeDialog: {
|
|
24
|
-
position: 'absolute',
|
|
25
|
-
right: 0,
|
|
26
|
-
top: 0,
|
|
27
|
-
},
|
|
28
19
|
dialogContainer: {
|
|
29
20
|
margin: 15,
|
|
30
21
|
},
|
|
@@ -59,17 +50,8 @@ function ImportBookmarks({
|
|
|
59
50
|
open={dialogOpen}
|
|
60
51
|
onClose={() => setDialogOpen(false)}
|
|
61
52
|
maxWidth="xl"
|
|
53
|
+
title="Import bookmarks"
|
|
62
54
|
>
|
|
63
|
-
<DialogTitle>
|
|
64
|
-
Import bookmarks
|
|
65
|
-
<IconButton
|
|
66
|
-
className={classes.closeDialog}
|
|
67
|
-
aria-label="close-dialog"
|
|
68
|
-
onClick={() => setDialogOpen(false)}
|
|
69
|
-
>
|
|
70
|
-
<CloseIcon />
|
|
71
|
-
</IconButton>
|
|
72
|
-
</DialogTitle>
|
|
73
55
|
<DialogContent>
|
|
74
56
|
<Typography>
|
|
75
57
|
Choose a BED format file to import. The first 4 columns will be used
|
|
@@ -27,7 +27,7 @@ export default function f(pluginManager: PluginManager) {
|
|
|
27
27
|
})
|
|
28
28
|
.actions(self => ({
|
|
29
29
|
importBookmarks(regions: Region[]) {
|
|
30
|
-
self.bookmarkedRegions = cast(self.bookmarkedRegions
|
|
30
|
+
self.bookmarkedRegions = cast([...self.bookmarkedRegions, ...regions])
|
|
31
31
|
},
|
|
32
32
|
addBookmark(region: Region) {
|
|
33
33
|
self.bookmarkedRegions.push(region)
|
|
@@ -28,7 +28,7 @@ export async function navToBookmark(
|
|
|
28
28
|
views.find(
|
|
29
29
|
v =>
|
|
30
30
|
v.type === 'LinearGenomeView' &&
|
|
31
|
-
// @ts-
|
|
31
|
+
// @ts-expect-error
|
|
32
32
|
v.assemblyNames[0] === selectedAssembly,
|
|
33
33
|
)) as MaybeLGV
|
|
34
34
|
|
|
@@ -81,12 +81,10 @@ export function downloadBookmarkFile(
|
|
|
81
81
|
: 'text/tab-separated-values;charset=utf-8',
|
|
82
82
|
})
|
|
83
83
|
|
|
84
|
-
|
|
85
|
-
|
|
86
|
-
|
|
87
|
-
|
|
88
|
-
fileName = 'jbrowse_bookmarks.tsv'
|
|
89
|
-
}
|
|
84
|
+
const fileName =
|
|
85
|
+
fileFormat === 'BED'
|
|
86
|
+
? `jbrowse_bookmarks_${selectedAssembly}.bed`
|
|
87
|
+
: 'jbrowse_bookmarks.tsv'
|
|
90
88
|
|
|
91
89
|
saveAs(blob, fileName)
|
|
92
90
|
}
|
package/src/index.ts
CHANGED
|
@@ -63,7 +63,7 @@ export default class extends Plugin {
|
|
|
63
63
|
this.activateBookmarkWidget()
|
|
64
64
|
bookmarkWidget = widgets.get('GridBookmark')
|
|
65
65
|
}
|
|
66
|
-
// @ts-
|
|
66
|
+
// @ts-expect-error
|
|
67
67
|
bookmarkWidget.addBookmark(firstRegion)
|
|
68
68
|
}
|
|
69
69
|
},
|
|
@@ -76,13 +76,13 @@ export default class extends Plugin {
|
|
|
76
76
|
{
|
|
77
77
|
label: 'Open bookmark widget',
|
|
78
78
|
icon: BookmarksIcon,
|
|
79
|
-
// @ts-
|
|
79
|
+
// @ts-expect-error
|
|
80
80
|
onClick: self.activateBookmarkWidget,
|
|
81
81
|
},
|
|
82
82
|
{
|
|
83
83
|
label: 'Bookmark current region',
|
|
84
84
|
icon: BookmarkIcon,
|
|
85
|
-
// @ts-
|
|
85
|
+
// @ts-expect-error
|
|
86
86
|
onClick: self.bookmarkCurrentRegion,
|
|
87
87
|
},
|
|
88
88
|
]
|
|
@@ -108,11 +108,11 @@ export default class extends Plugin {
|
|
|
108
108
|
const { widgets } = session
|
|
109
109
|
let bookmarkWidget = widgets.get('GridBookmark')
|
|
110
110
|
if (!bookmarkWidget) {
|
|
111
|
-
// @ts-
|
|
111
|
+
// @ts-expect-error
|
|
112
112
|
self.activateBookmarkWidget()
|
|
113
113
|
bookmarkWidget = widgets.get('GridBookmark')
|
|
114
114
|
}
|
|
115
|
-
// @ts-
|
|
115
|
+
// @ts-expect-error
|
|
116
116
|
bookmarkWidget.addBookmark(firstRegion)
|
|
117
117
|
}
|
|
118
118
|
},
|