@jbrowse/plugin-grid-bookmark 1.7.11 → 2.0.0

package/dist/GridBookmarkWidget/utils.js

@@ -1,136 +1,136 @@
 "use strict";
-
-var _interopRequireDefault = require("@babel/runtime/helpers/interopRequireDefault");
-
-Object.defineProperty(exports, "__esModule", {
-  value: true
-});
-exports.downloadBookmarkFile = downloadBookmarkFile;
-exports.navToBookmark = navToBookmark;
-
-var _regenerator = _interopRequireDefault(require("@babel/runtime/regenerator"));
-
-var _asyncToGenerator2 = _interopRequireDefault(require("@babel/runtime/helpers/asyncToGenerator"));
-
-var _fileSaver = require("file-saver");
-
-var _util = require("@jbrowse/core/util");
-
-function navToBookmark(_x, _x2, _x3) {
-  return _navToBookmark.apply(this, arguments);
-}
-
-function _navToBookmark() {
-  _navToBookmark = (0, _asyncToGenerator2.default)( /*#__PURE__*/_regenerator.default.mark(function _callee(locString, views, model) {
-    var selectedAssembly, lgv, session, assemblyManager, assembly, loc, refName, regions, canonicalRefName, newDisplayedRegion, view;
-    return _regenerator.default.wrap(function _callee$(_context) {
-      while (1) {
-        switch (_context.prev = _context.next) {
-          case 0:
-            selectedAssembly = model.selectedAssembly;
-            lgv = views.find(function (view) {
-              return view.type === 'LinearGenomeView' && // @ts-ignore
-              view.assemblyNames[0] === selectedAssembly;
-            });
-
-            if (!lgv) {
-              _context.next = 6;
-              break;
-            }
-
-            lgv.navToLocString(locString);
-            _context.next = 28;
-            break;
-
-          case 6:
-            session = (0, _util.getSession)(model);
-            assemblyManager = session.assemblyManager;
-            _context.next = 10;
-            return assemblyManager.waitForAssembly(selectedAssembly);
-
-          case 10:
-            assembly = _context.sent;
-
-            if (!assembly) {
-              _context.next = 28;
-              break;
+var __awaiter = (this && this.__awaiter) || function (thisArg, _arguments, P, generator) {
+    function adopt(value) { return value instanceof P ? value : new P(function (resolve) { resolve(value); }); }
+    return new (P || (P = Promise))(function (resolve, reject) {
+        function fulfilled(value) { try { step(generator.next(value)); } catch (e) { reject(e); } }
+        function rejected(value) { try { step(generator["throw"](value)); } catch (e) { reject(e); } }
+        function step(result) { result.done ? resolve(result.value) : adopt(result.value).then(fulfilled, rejected); }
+        step((generator = generator.apply(thisArg, _arguments || [])).next());
+    });
+};
+var __generator = (this && this.__generator) || function (thisArg, body) {
+    var _ = { label: 0, sent: function() { if (t[0] & 1) throw t[1]; return t[1]; }, trys: [], ops: [] }, f, y, t, g;
+    return g = { next: verb(0), "throw": verb(1), "return": verb(2) }, typeof Symbol === "function" && (g[Symbol.iterator] = function() { return this; }), g;
+    function verb(n) { return function (v) { return step([n, v]); }; }
+    function step(op) {
+        if (f) throw new TypeError("Generator is already executing.");
+        while (_) try {
+            if (f = 1, y && (t = op[0] & 2 ? y["return"] : op[0] ? y["throw"] || ((t = y["return"]) && t.call(y), 0) : y.next) && !(t = t.call(y, op[1])).done) return t;
+            if (y = 0, t) op = [op[0] & 2, t.value];
+            switch (op[0]) {
+                case 0: case 1: t = op; break;
+                case 4: _.label++; return { value: op[1], done: false };
+                case 5: _.label++; y = op[1]; op = [0]; continue;
+                case 7: op = _.ops.pop(); _.trys.pop(); continue;
+                default:
+                    if (!(t = _.trys, t = t.length > 0 && t[t.length - 1]) && (op[0] === 6 || op[0] === 2)) { _ = 0; continue; }
+                    if (op[0] === 3 && (!t || (op[1] > t[0] && op[1] < t[3]))) { _.label = op[1]; break; }
+                    if (op[0] === 6 && _.label < t[1]) { _.label = t[1]; t = op; break; }
+                    if (t && _.label < t[2]) { _.label = t[2]; _.ops.push(op); break; }
+                    if (t[2]) _.ops.pop();
+                    _.trys.pop(); continue;
             }
-
-            _context.prev = 12;
-            loc = (0, _util.parseLocString)(locString, function (refName) {
-              return session.assemblyManager.isValidRefName(refName, selectedAssembly);
-            });
-            refName = loc.refName;
-            regions = assembly.regions;
-            canonicalRefName = assembly.getCanonicalRefName(refName);
-
-            if (regions) {
-              newDisplayedRegion = regions.find(function (region) {
-                return region.refName === canonicalRefName;
-              });
+            op = body.call(thisArg, _);
+        } catch (e) { op = [6, e]; y = 0; } finally { f = t = 0; }
+        if (op[0] & 5) throw op[1]; return { value: op[0] ? op[1] : void 0, done: true };
+    }
+};
+Object.defineProperty(exports, "__esModule", { value: true });
+exports.downloadBookmarkFile = exports.navToBookmark = void 0;
+var file_saver_1 = require("file-saver");
+var util_1 = require("@jbrowse/core/util");
+function navToBookmark(locString, views, model) {
+    return __awaiter(this, void 0, void 0, function () {
+        var selectedAssembly, lgv, session_1, assemblyManager, assembly, loc, refName, regions, canonicalRefName_1, newDisplayedRegion, view_1, e_1;
+        return __generator(this, function (_a) {
+            switch (_a.label) {
+                case 0:
+                    selectedAssembly = model.selectedAssembly;
+                    lgv = views.find(function (view) {
+                        return view.type === 'LinearGenomeView' &&
+                            // @ts-ignore
+                            view.assemblyNames[0] === selectedAssembly;
+                    });
+                    if (!lgv) return [3 /*break*/, 1];
+                    lgv.navToLocString(locString);
+                    return [3 /*break*/, 6];
+                case 1:
+                    session_1 = (0, util_1.getSession)(model);
+                    assemblyManager = session_1.assemblyManager;
+                    return [4 /*yield*/, assemblyManager.waitForAssembly(selectedAssembly)];
+                case 2:
+                    assembly = _a.sent();
+                    if (!assembly) return [3 /*break*/, 6];
+                    _a.label = 3;
+                case 3:
+                    _a.trys.push([3, 5, , 6]);
+                    loc = (0, util_1.parseLocString)(locString, function (refName) {
+                        return session_1.assemblyManager.isValidRefName(refName, selectedAssembly);
+                    });
+                    refName = loc.refName;
+                    regions = assembly.regions;
+                    canonicalRefName_1 = assembly.getCanonicalRefName(refName);
+                    newDisplayedRegion = void 0;
+                    if (regions) {
+                        newDisplayedRegion = regions.find(function (region) { return region.refName === canonicalRefName_1; });
+                    }
+                    view_1 = session_1.addView('LinearGenomeView', {
+                        displayName: selectedAssembly,
+                    });
+                    return [4 /*yield*/, (0, util_1.when)(function () { return view_1.initialized; })];
+                case 4:
+                    _a.sent();
+                    view_1.setDisplayedRegions([
+                        JSON.parse(JSON.stringify(newDisplayedRegion)),
+                    ]);
+                    view_1.navToLocString(locString);
+                    return [3 /*break*/, 6];
+                case 5:
+                    e_1 = _a.sent();
+                    session_1.notify("".concat(e_1), 'error');
+                    return [3 /*break*/, 6];
+                case 6: return [2 /*return*/];
             }
-
-            view = session.addView('LinearGenomeView', {
-              displayName: selectedAssembly
-            });
-            _context.next = 21;
-            return (0, _util.when)(function () {
-              return view.initialized;
-            });
-
-          case 21:
-            view.setDisplayedRegions([JSON.parse(JSON.stringify(newDisplayedRegion))]);
-            view.navToLocString(locString);
-            _context.next = 28;
-            break;
-
-          case 25:
-            _context.prev = 25;
-            _context.t0 = _context["catch"](12);
-            session.notify("".concat(_context.t0), 'error');
-
-          case 28:
-          case "end":
-            return _context.stop();
-        }
-      }
-    }, _callee, null, [[12, 25]]);
-  }));
-  return _navToBookmark.apply(this, arguments);
+        });
+    });
 }
-
+exports.navToBookmark = navToBookmark;
 function downloadBookmarkFile(bookmarkedRegions, fileFormat, model) {
-  var selectedAssembly = model.selectedAssembly;
-  var fileHeader = fileFormat === 'TSV' ? 'chrom\tstart\tend\tlabel\tassembly_name\tcoord_range\n' : '';
-  var fileContents = bookmarkedRegions.map(function (b) {
-    var label = b.label;
-    var labelVal = label === '' ? '.' : label;
-    var locString = (0, _util.assembleLocString)(b);
-
+    var selectedAssembly = model.selectedAssembly;
+    var fileHeader = fileFormat === 'TSV'
+        ? 'chrom\tstart\tend\tlabel\tassembly_name\tcoord_range\n'
+        : '';
+    var fileContents = bookmarkedRegions
+        .map(function (b) {
+        var label = b.label;
+        var labelVal = label === '' ? '.' : label;
+        var locString = (0, util_1.assembleLocString)(b);
+        if (fileFormat === 'BED') {
+            if (b.assemblyName === selectedAssembly || selectedAssembly === 'all') {
+                // the "name" column (column 4) in a BED has a max of 255 characters
+                // according to the new spec: https://github.com/samtools/hts-specs/pull/570
+                return "".concat(b.refName, "\t").concat(b.start, "\t").concat(b.end, "\t").concat(labelVal.slice(0, 255), "\n");
+            }
+            return '';
+        }
+        else {
+            return "".concat(b.refName, "\t").concat(b.start + 1, "\t").concat(b.end, "\t").concat(labelVal, "\t").concat(b.assemblyName, "\t").concat(locString, "\n");
+        }
+    })
+        .reduce(function (a, b) { return a + b; }, fileHeader);
+    var blob = new Blob([fileContents || ''], {
+        type: fileFormat === 'BED'
+            ? 'text/x-bed;charset=utf-8'
+            : 'text/tab-separated-values;charset=utf-8',
+    });
+    var fileName;
     if (fileFormat === 'BED') {
-      if (b.assemblyName === selectedAssembly || selectedAssembly === 'all') {
-        // the "name" column (column 4) in a BED has a max of 255 characters
-        // according to the new spec: https://github.com/samtools/hts-specs/pull/570
-        return "".concat(b.refName, "\t").concat(b.start, "\t").concat(b.end, "\t").concat(labelVal.slice(0, 255), "\n");
-      }
-
-      return '';
-    } else {
-      return "".concat(b.refName, "\t").concat(b.start + 1, "\t").concat(b.end, "\t").concat(labelVal, "\t").concat(b.assemblyName, "\t").concat(locString, "\n");
+        fileName = "jbrowse_bookmarks_".concat(selectedAssembly, ".bed");
     }
-  }).reduce(function (a, b) {
-    return a + b;
-  }, fileHeader);
-  var blob = new Blob([fileContents || ''], {
-    type: fileFormat === 'BED' ? 'text/x-bed;charset=utf-8' : 'text/tab-separated-values;charset=utf-8'
-  });
-  var fileName;
-
-  if (fileFormat === 'BED') {
-    fileName = "jbrowse_bookmarks_".concat(selectedAssembly, ".bed");
-  } else {
-    fileName = 'jbrowse_bookmarks.tsv';
-  }
-
-  (0, _fileSaver.saveAs)(blob, fileName);
-}
+    else {
+        fileName = 'jbrowse_bookmarks.tsv';
+    }
+    (0, file_saver_1.saveAs)(blob, fileName);
+}
+exports.downloadBookmarkFile = downloadBookmarkFile;
+//# sourceMappingURL=utils.js.map

package/dist/GridBookmarkWidget/utils.js.map

@@ -0,0 +1 @@
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package/dist/index.js

@@ -1,192 +1,186 @@
 "use strict";
-
-var _interopRequireDefault = require("@babel/runtime/helpers/interopRequireDefault");
-
-var _typeof = require("@babel/runtime/helpers/typeof");
-
-Object.defineProperty(exports, "__esModule", {
-  value: true
+var __extends = (this && this.__extends) || (function () {
+    var extendStatics = function (d, b) {
+        extendStatics = Object.setPrototypeOf ||
+            ({ __proto__: [] } instanceof Array && function (d, b) { d.__proto__ = b; }) ||
+            function (d, b) { for (var p in b) if (Object.prototype.hasOwnProperty.call(b, p)) d[p] = b[p]; };
+        return extendStatics(d, b);
+    };
+    return function (d, b) {
+        if (typeof b !== "function" && b !== null)
+            throw new TypeError("Class extends value " + String(b) + " is not a constructor or null");
+        extendStatics(d, b);
+        function __() { this.constructor = d; }
+        d.prototype = b === null ? Object.create(b) : (__.prototype = b.prototype, new __());
+    };
+})();
+var __createBinding = (this && this.__createBinding) || (Object.create ? (function(o, m, k, k2) {
+    if (k2 === undefined) k2 = k;
+    var desc = Object.getOwnPropertyDescriptor(m, k);
+    if (!desc || ("get" in desc ? !m.__esModule : desc.writable || desc.configurable)) {
+      desc = { enumerable: true, get: function() { return m[k]; } };
+    }
+    Object.defineProperty(o, k2, desc);
+}) : (function(o, m, k, k2) {
+    if (k2 === undefined) k2 = k;
+    o[k2] = m[k];
+}));
+var __setModuleDefault = (this && this.__setModuleDefault) || (Object.create ? (function(o, v) {
+    Object.defineProperty(o, "default", { enumerable: true, value: v });
+}) : function(o, v) {
+    o["default"] = v;
 });
-exports.default = void 0;
-
-var _toConsumableArray2 = _interopRequireDefault(require("@babel/runtime/helpers/toConsumableArray"));
-
-var _classCallCheck2 = _interopRequireDefault(require("@babel/runtime/helpers/classCallCheck"));
-
-var _createClass2 = _interopRequireDefault(require("@babel/runtime/helpers/createClass"));
-
-var _assertThisInitialized2 = _interopRequireDefault(require("@babel/runtime/helpers/assertThisInitialized"));
-
-var _inherits2 = _interopRequireDefault(require("@babel/runtime/helpers/inherits"));
-
-var _possibleConstructorReturn2 = _interopRequireDefault(require("@babel/runtime/helpers/possibleConstructorReturn"));
-
-var _getPrototypeOf2 = _interopRequireDefault(require("@babel/runtime/helpers/getPrototypeOf"));
-
-var _defineProperty2 = _interopRequireDefault(require("@babel/runtime/helpers/defineProperty"));
-
-var _react = require("react");
-
-var _Bookmark = _interopRequireDefault(require("@material-ui/icons/Bookmark"));
-
-var _Bookmarks = _interopRequireDefault(require("@material-ui/icons/Bookmarks"));
-
-var _WidgetType = _interopRequireDefault(require("@jbrowse/core/pluggableElementTypes/WidgetType"));
-
-var _Plugin2 = _interopRequireDefault(require("@jbrowse/core/Plugin"));
-
-var _util = require("@jbrowse/core/util");
-
-var _GridBookmarkWidget = require("./GridBookmarkWidget");
-
-function _getRequireWildcardCache(nodeInterop) { if (typeof WeakMap !== "function") return null; var cacheBabelInterop = new WeakMap(); var cacheNodeInterop = new WeakMap(); return (_getRequireWildcardCache = function _getRequireWildcardCache(nodeInterop) { return nodeInterop ? cacheNodeInterop : cacheBabelInterop; })(nodeInterop); }
-
-function _interopRequireWildcard(obj, nodeInterop) { if (!nodeInterop && obj && obj.__esModule) { return obj; } if (obj === null || _typeof(obj) !== "object" && typeof obj !== "function") { return { default: obj }; } var cache = _getRequireWildcardCache(nodeInterop); if (cache && cache.has(obj)) { return cache.get(obj); } var newObj = {}; var hasPropertyDescriptor = Object.defineProperty && Object.getOwnPropertyDescriptor; for (var key in obj) { if (key !== "default" && Object.prototype.hasOwnProperty.call(obj, key)) { var desc = hasPropertyDescriptor ? Object.getOwnPropertyDescriptor(obj, key) : null; if (desc && (desc.get || desc.set)) { Object.defineProperty(newObj, key, desc); } else { newObj[key] = obj[key]; } } } newObj.default = obj; if (cache) { cache.set(obj, newObj); } return newObj; }
-
-function _createSuper(Derived) { var hasNativeReflectConstruct = _isNativeReflectConstruct(); return function _createSuperInternal() { var Super = (0, _getPrototypeOf2.default)(Derived), result; if (hasNativeReflectConstruct) { var NewTarget = (0, _getPrototypeOf2.default)(this).constructor; result = Reflect.construct(Super, arguments, NewTarget); } else { result = Super.apply(this, arguments); } return (0, _possibleConstructorReturn2.default)(this, result); }; }
-
-function _isNativeReflectConstruct() { if (typeof Reflect === "undefined" || !Reflect.construct) return false; if (Reflect.construct.sham) return false; if (typeof Proxy === "function") return true; try { Boolean.prototype.valueOf.call(Reflect.construct(Boolean, [], function () {})); return true; } catch (e) { return false; } }
-
-var _default = /*#__PURE__*/function (_Plugin) {
-  (0, _inherits2.default)(_default, _Plugin);
-
-  var _super = _createSuper(_default);
-
-  function _default() {
-    var _this;
-
-    (0, _classCallCheck2.default)(this, _default);
-
-    for (var _len = arguments.length, args = new Array(_len), _key = 0; _key < _len; _key++) {
-      args[_key] = arguments[_key];
+var __importStar = (this && this.__importStar) || function (mod) {
+    if (mod && mod.__esModule) return mod;
+    var result = {};
+    if (mod != null) for (var k in mod) if (k !== "default" && Object.prototype.hasOwnProperty.call(mod, k)) __createBinding(result, mod, k);
+    __setModuleDefault(result, mod);
+    return result;
+};
+var __read = (this && this.__read) || function (o, n) {
+    var m = typeof Symbol === "function" && o[Symbol.iterator];
+    if (!m) return o;
+    var i = m.call(o), r, ar = [], e;
+    try {
+        while ((n === void 0 || n-- > 0) && !(r = i.next()).done) ar.push(r.value);
     }
-
-    _this = _super.call.apply(_super, [this].concat(args));
-    (0, _defineProperty2.default)((0, _assertThisInitialized2.default)(_this), "name", 'GridBookmarkPlugin');
-    return _this;
-  }
-
-  (0, _createClass2.default)(_default, [{
-    key: "install",
-    value: function install(pluginManager) {
-      pluginManager.addWidgetType(function () {
-        return new _WidgetType.default({
-          name: 'GridBookmarkWidget',
-          heading: 'Bookmarked regions',
-          configSchema: _GridBookmarkWidget.configSchema,
-          stateModel: (0, _GridBookmarkWidget.stateModelFactory)(pluginManager),
-          ReactComponent: /*#__PURE__*/(0, _react.lazy)(function () {
-            return Promise.resolve().then(function () {
-              return _interopRequireWildcard(require('./GridBookmarkWidget/components/GridBookmarkWidget'));
-            });
-          })
-        });
-      });
-      pluginManager.addToExtensionPoint('Core-extendPluggableElement', function (pluggableElement) {
-        if (pluggableElement.name === 'LinearGenomeView') {
-          var _ref = pluggableElement,
-              stateModel = _ref.stateModel;
-          var newStateModel = stateModel.extend(function (self) {
-            var superMenuItems = self.menuItems;
-            var superRubberBandMenuItems = self.rubberBandMenuItems;
-            return {
-              actions: {
-                activateBookmarkWidget: function activateBookmarkWidget() {
-                  var session = (0, _util.getSession)(self);
-
-                  if ((0, _util.isSessionModelWithWidgets)(session)) {
-                    var bookmarkWidget = session.widgets.get('GridBookmark');
-
-                    if (!bookmarkWidget) {
-                      bookmarkWidget = session.addWidget('GridBookmarkWidget', 'GridBookmark', {
-                        view: self
-                      });
-                    }
-
-                    session.showWidget(bookmarkWidget);
-                    return bookmarkWidget;
-                  }
-
-                  throw new Error('Could not open bookmark widget');
-                },
-                bookmarkCurrentRegion: function bookmarkCurrentRegion() {
-                  var selectedRegions = self.getSelectedRegions(self.leftOffset, self.rightOffset);
-                  var firstRegion = selectedRegions[0];
-                  var session = (0, _util.getSession)(self);
-
-                  if ((0, _util.isSessionModelWithWidgets)(session)) {
-                    var widgets = session.widgets;
-                    var bookmarkWidget = widgets.get('GridBookmark');
-
-                    if (!bookmarkWidget) {
-                      this.activateBookmarkWidget();
-                      bookmarkWidget = widgets.get('GridBookmark');
-                    } // @ts-ignore
-
-
-                    bookmarkWidget.addBookmark(firstRegion);
-                  }
-                }
-              },
-              views: {
-                menuItems: function menuItems() {
-                  var newMenuItems = [].concat((0, _toConsumableArray2.default)(superMenuItems()), [{
-                    type: 'divider'
-                  }, {
-                    label: 'Open bookmark widget',
-                    icon: _Bookmarks.default,
-                    // @ts-ignore
-                    onClick: self.activateBookmarkWidget
-                  }, {
-                    label: 'Bookmark current region',
-                    icon: _Bookmark.default,
-                    // @ts-ignore
-                    onClick: self.bookmarkCurrentRegion
-                  }]);
-                  return newMenuItems;
-                },
-                rubberBandMenuItems: function rubberBandMenuItems() {
-                  var newRubberBandMenuItems = [].concat((0, _toConsumableArray2.default)(superRubberBandMenuItems()), [{
-                    label: 'Bookmark region',
-                    icon: _Bookmark.default,
-                    onClick: function onClick() {
-                      var leftOffset = self.leftOffset,
-                          rightOffset = self.rightOffset;
-                      var selectedRegions = self.getSelectedRegions(leftOffset, rightOffset);
-                      var firstRegion = selectedRegions[0];
-                      var session = (0, _util.getSession)(self);
-
-                      if ((0, _util.isSessionModelWithWidgets)(session)) {
-                        var widgets = session.widgets;
-                        var bookmarkWidget = widgets.get('GridBookmark');
-
-                        if (!bookmarkWidget) {
-                          // @ts-ignore
-                          self.activateBookmarkWidget();
-                          bookmarkWidget = widgets.get('GridBookmark');
-                        } // @ts-ignore
-
-
-                        bookmarkWidget.addBookmark(firstRegion);
-                      }
-                    }
-                  }]);
-                  return newRubberBandMenuItems;
-                }
-              }
-            };
-          });
-          pluggableElement.stateModel = newStateModel;
+    catch (error) { e = { error: error }; }
+    finally {
+        try {
+            if (r && !r.done && (m = i["return"])) m.call(i);
+        }
+        finally { if (e) throw e.error; }
+    }
+    return ar;
+};
+var __spreadArray = (this && this.__spreadArray) || function (to, from, pack) {
+    if (pack || arguments.length === 2) for (var i = 0, l = from.length, ar; i < l; i++) {
+        if (ar || !(i in from)) {
+            if (!ar) ar = Array.prototype.slice.call(from, 0, i);
+            ar[i] = from[i];
         }
-
-        return pluggableElement;
-      });
     }
-  }, {
-    key: "configure",
-    value: function configure(_pluginManager) {}
-  }]);
-  return _default;
-}(_Plugin2.default);
-
-exports.default = _default;
+    return to.concat(ar || Array.prototype.slice.call(from));
+};
+var __importDefault = (this && this.__importDefault) || function (mod) {
+    return (mod && mod.__esModule) ? mod : { "default": mod };
+};
+Object.defineProperty(exports, "__esModule", { value: true });
+var react_1 = require("react");
+var Bookmark_1 = __importDefault(require("@mui/icons-material/Bookmark"));
+var Bookmarks_1 = __importDefault(require("@mui/icons-material/Bookmarks"));
+var WidgetType_1 = __importDefault(require("@jbrowse/core/pluggableElementTypes/WidgetType"));
+var Plugin_1 = __importDefault(require("@jbrowse/core/Plugin"));
+var util_1 = require("@jbrowse/core/util");
+var GridBookmarkWidget_1 = require("./GridBookmarkWidget");
+var default_1 = /** @class */ (function (_super) {
+    __extends(default_1, _super);
+    function default_1() {
+        var _this = _super !== null && _super.apply(this, arguments) || this;
+        _this.name = 'GridBookmarkPlugin';
+        return _this;
+    }
+    default_1.prototype.install = function (pluginManager) {
+        pluginManager.addWidgetType(function () {
+            return new WidgetType_1.default({
+                name: 'GridBookmarkWidget',
+                heading: 'Bookmarked regions',
+                configSchema: GridBookmarkWidget_1.configSchema,
+                stateModel: (0, GridBookmarkWidget_1.stateModelFactory)(pluginManager),
+                ReactComponent: (0, react_1.lazy)(function () { return Promise.resolve().then(function () { return __importStar(require('./GridBookmarkWidget/components/GridBookmarkWidget')); }); }),
+            });
+        });
+        pluginManager.addToExtensionPoint('Core-extendPluggableElement', function (pluggableElement) {
+            if (pluggableElement.name === 'LinearGenomeView') {
+                var stateModel = pluggableElement.stateModel;
+                var newStateModel = stateModel.extend(function (self) {
+                    var superMenuItems = self.menuItems;
+                    var superRubberBandMenuItems = self.rubberBandMenuItems;
+                    return {
+                        actions: {
+                            activateBookmarkWidget: function () {
+                                var session = (0, util_1.getSession)(self);
+                                if ((0, util_1.isSessionModelWithWidgets)(session)) {
+                                    var bookmarkWidget = session.widgets.get('GridBookmark');
+                                    if (!bookmarkWidget) {
+                                        bookmarkWidget = session.addWidget('GridBookmarkWidget', 'GridBookmark', { view: self });
+                                    }
+                                    session.showWidget(bookmarkWidget);
+                                    return bookmarkWidget;
+                                }
+                                throw new Error('Could not open bookmark widget');
+                            },
+                            bookmarkCurrentRegion: function () {
+                                var selectedRegions = self.getSelectedRegions(self.leftOffset, self.rightOffset);
+                                var firstRegion = selectedRegions[0];
+                                var session = (0, util_1.getSession)(self);
+                                if ((0, util_1.isSessionModelWithWidgets)(session)) {
+                                    var widgets = session.widgets;
+                                    var bookmarkWidget = widgets.get('GridBookmark');
+                                    if (!bookmarkWidget) {
+                                        this.activateBookmarkWidget();
+                                        bookmarkWidget = widgets.get('GridBookmark');
+                                    }
+                                    // @ts-ignore
+                                    bookmarkWidget.addBookmark(firstRegion);
+                                }
+                            },
+                        },
+                        views: {
+                            menuItems: function () {
+                                var newMenuItems = __spreadArray(__spreadArray([], __read(superMenuItems()), false), [
+                                    { type: 'divider' },
+                                    {
+                                        label: 'Open bookmark widget',
+                                        icon: Bookmarks_1.default,
+                                        // @ts-ignore
+                                        onClick: self.activateBookmarkWidget,
+                                    },
+                                    {
+                                        label: 'Bookmark current region',
+                                        icon: Bookmark_1.default,
+                                        // @ts-ignore
+                                        onClick: self.bookmarkCurrentRegion,
+                                    },
+                                ], false);
+                                return newMenuItems;
+                            },
+                            rubberBandMenuItems: function () {
+                                var newRubberBandMenuItems = __spreadArray(__spreadArray([], __read(superRubberBandMenuItems()), false), [
+                                    {
+                                        label: 'Bookmark region',
+                                        icon: Bookmark_1.default,
+                                        onClick: function () {
+                                            var leftOffset = self.leftOffset, rightOffset = self.rightOffset;
+                                            var selectedRegions = self.getSelectedRegions(leftOffset, rightOffset);
+                                            var firstRegion = selectedRegions[0];
+                                            var session = (0, util_1.getSession)(self);
+                                            if ((0, util_1.isSessionModelWithWidgets)(session)) {
+                                                var widgets = session.widgets;
+                                                var bookmarkWidget = widgets.get('GridBookmark');
+                                                if (!bookmarkWidget) {
+                                                    // @ts-ignore
+                                                    self.activateBookmarkWidget();
+                                                    bookmarkWidget = widgets.get('GridBookmark');
+                                                }
+                                                // @ts-ignore
+                                                bookmarkWidget.addBookmark(firstRegion);
+                                            }
+                                        },
+                                    },
+                                ], false);
+                                return newRubberBandMenuItems;
+                            },
+                        },
+                    };
+                });
+                pluggableElement.stateModel = newStateModel;
+            }
+            return pluggableElement;
+        });
+    };
+    default_1.prototype.configure = function (_pluginManager) { };
+    return default_1;
+}(Plugin_1.default));
+exports.default = default_1;
+//# sourceMappingURL=index.js.map