@jbrowse/plugin-gff3 3.3.0 → 3.5.0

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Files changed (9) hide show
  1. package/dist/Gff3Adapter/Gff3Adapter.d.ts +0 -1
  2. package/dist/Gff3Adapter/Gff3Adapter.js +1 -2
  3. package/dist/Gff3TabixAdapter/Gff3TabixAdapter.d.ts +0 -1
  4. package/dist/Gff3TabixAdapter/Gff3TabixAdapter.js +0 -1
  5. package/esm/Gff3Adapter/Gff3Adapter.d.ts +0 -1
  6. package/esm/Gff3Adapter/Gff3Adapter.js +1 -2
  7. package/esm/Gff3TabixAdapter/Gff3TabixAdapter.d.ts +0 -1
  8. package/esm/Gff3TabixAdapter/Gff3TabixAdapter.js +0 -1
  9. package/package.json +6 -6
package/dist/Gff3Adapter/Gff3Adapter.d.ts CHANGED
@@ -15,6 +15,5 @@ export default class Gff3Adapter extends BaseFeatureDataAdapter {
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  getRefNames(opts?: BaseOptions): Promise<string[]>;
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  getHeader(opts?: BaseOptions): Promise<string>;
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  getFeatures(query: NoAssemblyRegion, opts?: BaseOptions): import("rxjs").Observable<Feature>;
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- freeResources(): void;
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  }
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  export {};
package/dist/Gff3Adapter/Gff3Adapter.js CHANGED
@@ -18,7 +18,7 @@ class Gff3Adapter extends BaseAdapter_1.BaseFeatureDataAdapter {
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  }
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  async loadDataP(opts) {
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  const { statusCallback = () => { } } = opts || {};
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- const buffer = await (0, util_1.fetchAndMaybeUnzip)((0, io_1.openLocation)(this.getConf('gffLocation'), this.pluginManager));
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+ const buffer = await (0, util_1.fetchAndMaybeUnzip)((0, io_1.openLocation)(this.getConf('gffLocation'), this.pluginManager), opts);
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  const headerLines = [];
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  const featureMap = {};
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  const decoder = new TextDecoder('utf8');
@@ -109,6 +109,5 @@ class Gff3Adapter extends BaseAdapter_1.BaseFeatureDataAdapter {
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  }
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  }, opts.stopToken);
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  }
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- freeResources() { }
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  }
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  exports.default = Gff3Adapter;
package/dist/Gff3TabixAdapter/Gff3TabixAdapter.d.ts CHANGED
@@ -19,5 +19,4 @@ export default class Gff3TabixAdapter extends BaseFeatureDataAdapter {
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  getFeatures(query: Region, opts?: BaseOptions): import("rxjs").Observable<Feature>;
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  private getFeaturesHelper;
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  private parseLine;
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- freeResources(): void;
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  }
package/dist/Gff3TabixAdapter/Gff3TabixAdapter.js CHANGED
@@ -127,6 +127,5 @@ class Gff3TabixAdapter extends BaseAdapter_1.BaseFeatureDataAdapter {
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  fields,
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  };
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  }
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- freeResources() { }
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  }
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  exports.default = Gff3TabixAdapter;
package/esm/Gff3Adapter/Gff3Adapter.d.ts CHANGED
@@ -15,6 +15,5 @@ export default class Gff3Adapter extends BaseFeatureDataAdapter {
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  getRefNames(opts?: BaseOptions): Promise<string[]>;
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  getHeader(opts?: BaseOptions): Promise<string>;
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  getFeatures(query: NoAssemblyRegion, opts?: BaseOptions): import("rxjs").Observable<Feature>;
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- freeResources(): void;
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  }
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  export {};
package/esm/Gff3Adapter/Gff3Adapter.js CHANGED
@@ -13,7 +13,7 @@ export default class Gff3Adapter extends BaseFeatureDataAdapter {
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  }
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  async loadDataP(opts) {
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  const { statusCallback = () => { } } = opts || {};
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- const buffer = await fetchAndMaybeUnzip(openLocation(this.getConf('gffLocation'), this.pluginManager));
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+ const buffer = await fetchAndMaybeUnzip(openLocation(this.getConf('gffLocation'), this.pluginManager), opts);
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  const headerLines = [];
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  const featureMap = {};
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  const decoder = new TextDecoder('utf8');
@@ -104,5 +104,4 @@ export default class Gff3Adapter extends BaseFeatureDataAdapter {
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  }
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  }, opts.stopToken);
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  }
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- freeResources() { }
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  }
package/esm/Gff3TabixAdapter/Gff3TabixAdapter.d.ts CHANGED
@@ -19,5 +19,4 @@ export default class Gff3TabixAdapter extends BaseFeatureDataAdapter {
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  getFeatures(query: Region, opts?: BaseOptions): import("rxjs").Observable<Feature>;
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  private getFeaturesHelper;
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  private parseLine;
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- freeResources(): void;
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  }
package/esm/Gff3TabixAdapter/Gff3TabixAdapter.js CHANGED
@@ -122,5 +122,4 @@ export default class Gff3TabixAdapter extends BaseFeatureDataAdapter {
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  fields,
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  };
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  }
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- freeResources() { }
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  }
package/package.json CHANGED
@@ -1,6 +1,6 @@
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  {
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  "name": "@jbrowse/plugin-gff3",
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- "version": "3.3.0",
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+ "version": "3.5.0",
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  "description": "JBrowse 2 gff3.",
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  "keywords": [
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  "jbrowse",
@@ -37,10 +37,10 @@
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  },
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  "dependencies": {
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  "@flatten-js/interval-tree": "^1.0.15",
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- "@gmod/bgzf-filehandle": "^2.0.1",
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- "@gmod/tabix": "^2.0.0",
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- "@jbrowse/core": "^3.3.0",
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- "@jbrowse/plugin-linear-genome-view": "^3.3.0",
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+ "@gmod/bgzf-filehandle": "^4.0.0",
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+ "@gmod/tabix": "^3.0.1",
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+ "@jbrowse/core": "^3.5.0",
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+ "@jbrowse/plugin-linear-genome-view": "^3.5.0",
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  "@mui/material": "^7.0.0",
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  "gff-nostream": "^1.3.3",
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  "mobx": "^6.0.0",
@@ -53,5 +53,5 @@
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  "distModule": "esm/index.js",
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  "srcModule": "src/index.ts",
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  "module": "esm/index.js",
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- "gitHead": "0bb64d8cc7ecdd167515308b31eec3d9acbc59e4"
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+ "gitHead": "8a8aa0aab2229dece106a5715a767e649e2fe92b"
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  }