@jbrowse/plugin-gff3 3.2.0 → 3.3.0

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (5) hide show
  1. package/dist/Gff3TabixAdapter/Gff3TabixAdapter.js +1 -5
  2. package/dist/Gff3TabixAdapter/configSchema.js +1 -1
  3. package/esm/Gff3TabixAdapter/Gff3TabixAdapter.js +1 -5
  4. package/esm/Gff3TabixAdapter/configSchema.js +1 -1
  5. package/package.json +5 -5
package/dist/Gff3TabixAdapter/Gff3TabixAdapter.js CHANGED
@@ -17,11 +17,7 @@ class Gff3TabixAdapter extends BaseAdapter_1.BaseFeatureDataAdapter {
17
17
  const gffGzLocation = this.getConf('gffGzLocation');
18
18
  const indexType = this.getConf(['index', 'indexType']);
19
19
  const loc = this.getConf(['index', 'location']);
20
- const dontRedispatch = this.getConf('dontRedispatch') || [
21
- 'chromosome',
22
- 'contig',
23
- 'region',
24
- ];
20
+ const dontRedispatch = this.getConf('dontRedispatch');
25
21
  const gff = new tabix_1.TabixIndexedFile({
26
22
  filehandle: (0, io_1.openLocation)(gffGzLocation, this.pluginManager),
27
23
  csiFilehandle: indexType === 'CSI' ? (0, io_1.openLocation)(loc, this.pluginManager) : undefined,
package/dist/Gff3TabixAdapter/configSchema.js CHANGED
@@ -41,7 +41,7 @@ const Gff3TabixAdapter = (0, configuration_1.ConfigurationSchema)('Gff3TabixAdap
41
41
  },
42
42
  index: {
43
43
  location: {
44
- uri: snap.uri,
44
+ uri: `${snap.uri}.tbi`,
45
45
  baseUri: snap.baseUri,
46
46
  },
47
47
  },
package/esm/Gff3TabixAdapter/Gff3TabixAdapter.js CHANGED
@@ -12,11 +12,7 @@ export default class Gff3TabixAdapter extends BaseFeatureDataAdapter {
12
12
  const gffGzLocation = this.getConf('gffGzLocation');
13
13
  const indexType = this.getConf(['index', 'indexType']);
14
14
  const loc = this.getConf(['index', 'location']);
15
- const dontRedispatch = this.getConf('dontRedispatch') || [
16
- 'chromosome',
17
- 'contig',
18
- 'region',
19
- ];
15
+ const dontRedispatch = this.getConf('dontRedispatch');
20
16
  const gff = new TabixIndexedFile({
21
17
  filehandle: openLocation(gffGzLocation, this.pluginManager),
22
18
  csiFilehandle: indexType === 'CSI' ? openLocation(loc, this.pluginManager) : undefined,
package/esm/Gff3TabixAdapter/configSchema.js CHANGED
@@ -39,7 +39,7 @@ const Gff3TabixAdapter = ConfigurationSchema('Gff3TabixAdapter', {
39
39
  },
40
40
  index: {
41
41
  location: {
42
- uri: snap.uri,
42
+ uri: `${snap.uri}.tbi`,
43
43
  baseUri: snap.baseUri,
44
44
  },
45
45
  },
package/package.json CHANGED
@@ -1,6 +1,6 @@
1
1
  {
2
2
  "name": "@jbrowse/plugin-gff3",
3
- "version": "3.2.0",
3
+ "version": "3.3.0",
4
4
  "description": "JBrowse 2 gff3.",
5
5
  "keywords": [
6
6
  "jbrowse",
@@ -39,9 +39,9 @@
39
39
  "@flatten-js/interval-tree": "^1.0.15",
40
40
  "@gmod/bgzf-filehandle": "^2.0.1",
41
41
  "@gmod/tabix": "^2.0.0",
42
- "@jbrowse/core": "^3.2.0",
43
- "@jbrowse/plugin-linear-genome-view": "^3.2.0",
44
- "@mui/material": "^6.0.0",
42
+ "@jbrowse/core": "^3.3.0",
43
+ "@jbrowse/plugin-linear-genome-view": "^3.3.0",
44
+ "@mui/material": "^7.0.0",
45
45
  "gff-nostream": "^1.3.3",
46
46
  "mobx": "^6.0.0",
47
47
  "mobx-state-tree": "^5.0.0",
@@ -53,5 +53,5 @@
53
53
  "distModule": "esm/index.js",
54
54
  "srcModule": "src/index.ts",
55
55
  "module": "esm/index.js",
56
- "gitHead": "c750e3f56706a490c19ba75abd807fec5e38aebf"
56
+ "gitHead": "0bb64d8cc7ecdd167515308b31eec3d9acbc59e4"
57
57
  }