@jbrowse/plugin-gff3 3.0.5 → 3.1.0
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
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@@ -5,7 +5,23 @@ function x() { }
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const Gff3Adapter = (0, configuration_1.ConfigurationSchema)('Gff3Adapter', {
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gffLocation: {
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type: 'fileLocation',
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defaultValue: {
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defaultValue: {
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uri: '/path/to/my.gff',
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locationType: 'UriLocation',
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},
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},
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}, {
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}, {
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explicitlyTyped: true,
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preProcessSnapshot: snap => {
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return snap.uri
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? {
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...snap,
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gffLocation: {
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uri: snap.uri,
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baseUri: snap.baseUri,
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},
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}
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: snap;
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},
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});
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exports.default = Gff3Adapter;
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@@ -6,7 +6,10 @@ function x() { }
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const Gff3TabixAdapter = (0, configuration_1.ConfigurationSchema)('Gff3TabixAdapter', {
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gffGzLocation: {
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type: 'fileLocation',
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defaultValue: {
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defaultValue: {
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uri: '/path/to/my.gff.gz',
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locationType: 'UriLocation',
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},
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},
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index: (0, configuration_1.ConfigurationSchema)('Gff3TabixIndex', {
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indexType: {
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@@ -26,5 +29,24 @@ const Gff3TabixAdapter = (0, configuration_1.ConfigurationSchema)('Gff3TabixAdap
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type: 'stringArray',
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defaultValue: ['chromosome', 'region', 'contig'],
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},
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}, {
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}, {
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explicitlyTyped: true,
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preProcessSnapshot: snap => {
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return snap.uri
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? {
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...snap,
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gffGzLocation: {
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uri: snap.uri,
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baseUri: snap.baseUri,
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},
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index: {
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location: {
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uri: snap.uri,
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baseUri: snap.baseUri,
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},
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},
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}
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: snap;
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},
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});
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exports.default = Gff3TabixAdapter;
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@@ -3,7 +3,23 @@ function x() { }
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const Gff3Adapter = ConfigurationSchema('Gff3Adapter', {
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gffLocation: {
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type: 'fileLocation',
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defaultValue: {
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defaultValue: {
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uri: '/path/to/my.gff',
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locationType: 'UriLocation',
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},
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},
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}, {
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}, {
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explicitlyTyped: true,
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preProcessSnapshot: snap => {
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return snap.uri
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? {
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...snap,
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gffLocation: {
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uri: snap.uri,
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baseUri: snap.baseUri,
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},
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}
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: snap;
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},
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});
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export default Gff3Adapter;
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@@ -4,7 +4,10 @@ function x() { }
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const Gff3TabixAdapter = ConfigurationSchema('Gff3TabixAdapter', {
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gffGzLocation: {
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type: 'fileLocation',
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defaultValue: {
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defaultValue: {
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uri: '/path/to/my.gff.gz',
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locationType: 'UriLocation',
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},
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},
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index: ConfigurationSchema('Gff3TabixIndex', {
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indexType: {
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@@ -24,5 +27,24 @@ const Gff3TabixAdapter = ConfigurationSchema('Gff3TabixAdapter', {
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type: 'stringArray',
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defaultValue: ['chromosome', 'region', 'contig'],
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},
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-
}, {
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}, {
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explicitlyTyped: true,
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preProcessSnapshot: snap => {
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return snap.uri
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? {
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...snap,
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gffGzLocation: {
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uri: snap.uri,
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baseUri: snap.baseUri,
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},
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index: {
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location: {
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uri: snap.uri,
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baseUri: snap.baseUri,
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},
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},
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}
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: snap;
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},
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});
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export default Gff3TabixAdapter;
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package/package.json
CHANGED
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@@ -1,6 +1,6 @@
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1
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{
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"name": "@jbrowse/plugin-gff3",
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"version": "3.0
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"version": "3.1.0",
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"description": "JBrowse 2 gff3.",
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"keywords": [
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"jbrowse",
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@@ -39,8 +39,8 @@
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"@flatten-js/interval-tree": "^1.0.15",
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"@gmod/bgzf-filehandle": "^2.0.1",
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"@gmod/tabix": "^2.0.0",
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"@jbrowse/core": "^3.0
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"@jbrowse/plugin-linear-genome-view": "^3.0
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"@jbrowse/core": "^3.1.0",
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"@jbrowse/plugin-linear-genome-view": "^3.1.0",
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"@mui/material": "^6.0.0",
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"gff-nostream": "^1.3.3",
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"mobx": "^6.0.0",
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@@ -53,5 +53,5 @@
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"distModule": "esm/index.js",
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"srcModule": "src/index.ts",
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"module": "esm/index.js",
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"gitHead": "
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"gitHead": "91492049ddea0aed90eb24d3c066c2d9f5a6b189"
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}
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