@jbrowse/plugin-gff3 2.4.1 → 2.5.0

package/dist/Gff3Adapter/configSchema.d.ts

@@ -1,2 +1,13 @@
-declare const Gff3Adapter: import("@jbrowse/core/configuration").AnyConfigurationSchemaType;
+declare const Gff3Adapter: import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
+    /**
+     * #slot
+     */
+    gffLocation: {
+        type: string;
+        defaultValue: {
+            uri: string;
+            locationType: string;
+        };
+    };
+}, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, undefined>>;
 export default Gff3Adapter;

package/dist/Gff3TabixAdapter/Gff3TabixAdapter.d.ts

@@ -9,7 +9,7 @@ export default class extends BaseFeatureDataAdapter {
     protected gff: TabixIndexedFile;
     protected dontRedispatch: string[];
     constructor(config: AnyConfigurationModel, getSubAdapter?: getSubAdapterType, pluginManager?: PluginManager);
-    getRefNames(opts?: BaseOptions): Promise<any>;
+    getRefNames(opts?: BaseOptions): Promise<string[]>;
     getHeader(): Promise<string>;
     getFeatures(query: Region, opts?: BaseOptions): import("rxjs").Observable<Feature>;
     private getFeaturesHelper;

package/dist/Gff3TabixAdapter/configSchema.d.ts

@@ -1,2 +1,44 @@
-declare const Gff3TabixAdapter: import("@jbrowse/core/configuration").AnyConfigurationSchemaType;
+declare const Gff3TabixAdapter: import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
+    /**
+     * #slot
+     */
+    gffGzLocation: {
+        type: string;
+        defaultValue: {
+            uri: string;
+            locationType: string;
+        };
+    };
+    index: import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
+        /**
+         * #slot index.indexType
+         */
+        indexType: {
+            model: import("mobx-state-tree").ISimpleType<string>;
+            type: string;
+            defaultValue: string;
+        };
+        /**
+         * #slot index.indexType
+         */
+        location: {
+            type: string;
+            defaultValue: {
+                uri: string;
+                locationType: string;
+            };
+        };
+    }, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, undefined>>;
+    /**
+     * #slot
+     * the Gff3TabixAdapter has to "redispatch" if it fetches a region and
+     * features it finds inside that region extend outside the region we requested.
+     * you can disable this for certain feature types to avoid fetching e.g. the
+     * entire chromosome
+     */
+    dontRedispatch: {
+        type: string;
+        defaultValue: string[];
+    };
+}, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, undefined>>;
 export default Gff3TabixAdapter;

package/esm/Gff3Adapter/configSchema.d.ts

@@ -1,2 +1,13 @@
-declare const Gff3Adapter: import("@jbrowse/core/configuration").AnyConfigurationSchemaType;
+declare const Gff3Adapter: import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
+    /**
+     * #slot
+     */
+    gffLocation: {
+        type: string;
+        defaultValue: {
+            uri: string;
+            locationType: string;
+        };
+    };
+}, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, undefined>>;
 export default Gff3Adapter;

package/esm/Gff3TabixAdapter/Gff3TabixAdapter.d.ts

@@ -9,7 +9,7 @@ export default class extends BaseFeatureDataAdapter {
     protected gff: TabixIndexedFile;
     protected dontRedispatch: string[];
     constructor(config: AnyConfigurationModel, getSubAdapter?: getSubAdapterType, pluginManager?: PluginManager);
-    getRefNames(opts?: BaseOptions): Promise<any>;
+    getRefNames(opts?: BaseOptions): Promise<string[]>;
     getHeader(): Promise<string>;
     getFeatures(query: Region, opts?: BaseOptions): import("rxjs").Observable<Feature>;
     private getFeaturesHelper;

package/esm/Gff3TabixAdapter/configSchema.d.ts

@@ -1,2 +1,44 @@
-declare const Gff3TabixAdapter: import("@jbrowse/core/configuration").AnyConfigurationSchemaType;
+declare const Gff3TabixAdapter: import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
+    /**
+     * #slot
+     */
+    gffGzLocation: {
+        type: string;
+        defaultValue: {
+            uri: string;
+            locationType: string;
+        };
+    };
+    index: import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
+        /**
+         * #slot index.indexType
+         */
+        indexType: {
+            model: import("mobx-state-tree").ISimpleType<string>;
+            type: string;
+            defaultValue: string;
+        };
+        /**
+         * #slot index.indexType
+         */
+        location: {
+            type: string;
+            defaultValue: {
+                uri: string;
+                locationType: string;
+            };
+        };
+    }, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, undefined>>;
+    /**
+     * #slot
+     * the Gff3TabixAdapter has to "redispatch" if it fetches a region and
+     * features it finds inside that region extend outside the region we requested.
+     * you can disable this for certain feature types to avoid fetching e.g. the
+     * entire chromosome
+     */
+    dontRedispatch: {
+        type: string;
+        defaultValue: string[];
+    };
+}, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, undefined>>;
 export default Gff3TabixAdapter;

package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@jbrowse/plugin-gff3",
-  "version": "2.4.1",
+  "version": "2.5.0",
   "description": "JBrowse 2 gff3.",
   "keywords": [
     "jbrowse",
@@ -56,5 +56,5 @@
   "distModule": "esm/index.js",
   "srcModule": "src/index.ts",
   "module": "esm/index.js",
-  "gitHead": "747c50c4edc0184827efa4f8dfc576ca9a72caeb"
+  "gitHead": "d1ca073996d008f0fe9a52f7c1a47ae649dcfdaf"
 }