@jbrowse/plugin-gff3 2.11.2 → 2.12.1

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Files changed (8) hide show
  1. package/dist/Gff3Adapter/Gff3Adapter.d.ts +1 -1
  2. package/dist/Gff3Adapter/Gff3Adapter.js +2 -2
  3. package/dist/Gff3Adapter/index.js +1 -1
  4. package/dist/Gff3TabixAdapter/index.js +1 -1
  5. package/dist/GuessGff3/index.js +1 -1
  6. package/esm/Gff3Adapter/Gff3Adapter.d.ts +1 -1
  7. package/esm/Gff3Adapter/Gff3Adapter.js +2 -2
  8. package/package.json +2 -2
package/dist/Gff3Adapter/Gff3Adapter.d.ts CHANGED
@@ -6,7 +6,7 @@ export default class Gff3Adapter extends BaseFeatureDataAdapter {
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  calculatedIntervalTreeMap: Record<string, IntervalTree>;
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  protected gffFeatures?: Promise<{
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  header: string;
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- intervalTreeMap: Record<string, (sc?: (arg: string) => void) => IntervalTree>;
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+ intervalTreeMap: Record<string, ((sc?: (arg: string) => void) => IntervalTree) | undefined>;
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  }>;
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  private loadDataP;
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  private loadData;
package/dist/Gff3Adapter/Gff3Adapter.js CHANGED
@@ -102,11 +102,11 @@ class Gff3Adapter extends BaseAdapter_1.BaseFeatureDataAdapter {
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  }
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  getFeatures(query, opts = {}) {
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  return (0, rxjs_1.ObservableCreate)(async (observer) => {
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- var _a;
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+ var _a, _b;
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  try {
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  const { start, end, refName } = query;
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  const { intervalTreeMap } = await this.loadData(opts);
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- (_a = intervalTreeMap[refName](opts.statusCallback)) === null || _a === void 0 ? void 0 : _a.search([start, end]).forEach(f => observer.next(f));
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+ (_b = (_a = intervalTreeMap[refName]) === null || _a === void 0 ? void 0 : _a.call(intervalTreeMap, opts.statusCallback)) === null || _b === void 0 ? void 0 : _b.search([start, end]).forEach(f => observer.next(f));
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  observer.complete();
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  }
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  catch (e) {
package/dist/Gff3Adapter/index.js CHANGED
@@ -26,6 +26,7 @@ var __importDefault = (this && this.__importDefault) || function (mod) {
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  return (mod && mod.__esModule) ? mod : { "default": mod };
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  };
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  Object.defineProperty(exports, "__esModule", { value: true });
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+ exports.default = Gff3AdapterF;
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  const pluggableElementTypes_1 = require("@jbrowse/core/pluggableElementTypes");
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  const configSchema_1 = __importDefault(require("./configSchema"));
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  function Gff3AdapterF(pluginManager) {
@@ -36,4 +37,3 @@ function Gff3AdapterF(pluginManager) {
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  getAdapterClass: () => Promise.resolve().then(() => __importStar(require('./Gff3Adapter'))).then(r => r.default),
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  }));
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  }
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- exports.default = Gff3AdapterF;
package/dist/Gff3TabixAdapter/index.js CHANGED
@@ -26,6 +26,7 @@ var __importDefault = (this && this.__importDefault) || function (mod) {
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  return (mod && mod.__esModule) ? mod : { "default": mod };
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  };
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  Object.defineProperty(exports, "__esModule", { value: true });
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+ exports.default = Gff3TabixAdapterF;
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  const pluggableElementTypes_1 = require("@jbrowse/core/pluggableElementTypes");
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  const configSchema_1 = __importDefault(require("./configSchema"));
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  function Gff3TabixAdapterF(pluginManager) {
@@ -36,4 +37,3 @@ function Gff3TabixAdapterF(pluginManager) {
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  getAdapterClass: () => Promise.resolve().then(() => __importStar(require('./Gff3TabixAdapter'))).then(r => r.default),
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  }));
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  }
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- exports.default = Gff3TabixAdapterF;
package/dist/GuessGff3/index.js CHANGED
@@ -1,5 +1,6 @@
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  "use strict";
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  Object.defineProperty(exports, "__esModule", { value: true });
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+ exports.default = GuessGff3F;
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  const tracks_1 = require("@jbrowse/core/util/tracks");
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  function GuessGff3F(pluginManager) {
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  pluginManager.addToExtensionPoint('Core-guessAdapterForLocation', (adapterGuesser) => {
@@ -41,4 +42,3 @@ function GuessGff3F(pluginManager) {
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  };
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  });
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  }
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- exports.default = GuessGff3F;
package/esm/Gff3Adapter/Gff3Adapter.d.ts CHANGED
@@ -6,7 +6,7 @@ export default class Gff3Adapter extends BaseFeatureDataAdapter {
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  calculatedIntervalTreeMap: Record<string, IntervalTree>;
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  protected gffFeatures?: Promise<{
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  header: string;
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- intervalTreeMap: Record<string, (sc?: (arg: string) => void) => IntervalTree>;
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+ intervalTreeMap: Record<string, ((sc?: (arg: string) => void) => IntervalTree) | undefined>;
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  }>;
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  private loadDataP;
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  private loadData;
package/esm/Gff3Adapter/Gff3Adapter.js CHANGED
@@ -97,11 +97,11 @@ export default class Gff3Adapter extends BaseFeatureDataAdapter {
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  }
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  getFeatures(query, opts = {}) {
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  return ObservableCreate(async (observer) => {
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- var _a;
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+ var _a, _b;
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  try {
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  const { start, end, refName } = query;
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  const { intervalTreeMap } = await this.loadData(opts);
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- (_a = intervalTreeMap[refName](opts.statusCallback)) === null || _a === void 0 ? void 0 : _a.search([start, end]).forEach(f => observer.next(f));
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+ (_b = (_a = intervalTreeMap[refName]) === null || _a === void 0 ? void 0 : _a.call(intervalTreeMap, opts.statusCallback)) === null || _b === void 0 ? void 0 : _b.search([start, end]).forEach(f => observer.next(f));
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  observer.complete();
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  }
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  catch (e) {
package/package.json CHANGED
@@ -1,6 +1,6 @@
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  {
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  "name": "@jbrowse/plugin-gff3",
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- "version": "2.11.2",
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+ "version": "2.12.1",
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  "description": "JBrowse 2 gff3.",
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  "keywords": [
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  "jbrowse",
@@ -55,5 +55,5 @@
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  "distModule": "esm/index.js",
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  "srcModule": "src/index.ts",
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  "module": "esm/index.js",
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- "gitHead": "511048cb6965f0bf624c96de244e7fd47fce17d6"
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+ "gitHead": "20f16ae5a56ae5e4806aaa373131e540b0b5b0fd"
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  }