@jbrowse/plugin-gff3 2.11.0 → 2.11.1

package/dist/Gff3Adapter/Gff3Adapter.d.ts

@@ -2,7 +2,7 @@ import { BaseFeatureDataAdapter, BaseOptions } from '@jbrowse/core/data_adapters
 import { NoAssemblyRegion } from '@jbrowse/core/util/types';
 import IntervalTree from '@flatten-js/interval-tree';
 import { Feature } from '@jbrowse/core/util/simpleFeature';
-export default class extends BaseFeatureDataAdapter {
+export default class Gff3Adapter extends BaseFeatureDataAdapter {
     protected gffFeatures?: Promise<{
         header: string;
         intervalTree: Record<string, IntervalTree>;

package/dist/Gff3Adapter/Gff3Adapter.js

@@ -13,7 +13,7 @@ const gff_1 = __importDefault(require("@gmod/gff"));
 function isGzip(buf) {
     return buf[0] === 31 && buf[1] === 139 && buf[2] === 8;
 }
-class default_1 extends BaseAdapter_1.BaseFeatureDataAdapter {
+class Gff3Adapter extends BaseAdapter_1.BaseFeatureDataAdapter {
     async loadDataP() {
         const pm = this.pluginManager;
         const buf = await (0, io_1.openLocation)(this.getConf('gffLocation'), pm).readFile();
@@ -144,4 +144,4 @@ class default_1 extends BaseAdapter_1.BaseFeatureDataAdapter {
     }
     freeResources( /* { region } */) { }
 }
-exports.default = default_1;
+exports.default = Gff3Adapter;

package/dist/Gff3Adapter/index.d.ts

@@ -1,3 +1,2 @@
 import PluginManager from '@jbrowse/core/PluginManager';
-declare const _default: (pluginManager: PluginManager) => void;
-export default _default;
+export default function Gff3AdapterF(pluginManager: PluginManager): void;

package/dist/Gff3Adapter/index.js

@@ -28,11 +28,12 @@ var __importDefault = (this && this.__importDefault) || function (mod) {
 Object.defineProperty(exports, "__esModule", { value: true });
 const pluggableElementTypes_1 = require("@jbrowse/core/pluggableElementTypes");
 const configSchema_1 = __importDefault(require("./configSchema"));
-exports.default = (pluginManager) => {
+function Gff3AdapterF(pluginManager) {
     pluginManager.addAdapterType(() => new pluggableElementTypes_1.AdapterType({
         name: 'Gff3Adapter',
         displayName: 'GFF3 adapter',
         configSchema: configSchema_1.default,
         getAdapterClass: () => Promise.resolve().then(() => __importStar(require('./Gff3Adapter'))).then(r => r.default),
     }));
-};
+}
+exports.default = Gff3AdapterF;

package/dist/Gff3TabixAdapter/Gff3TabixAdapter.d.ts

@@ -5,7 +5,7 @@ import { TabixIndexedFile } from '@gmod/tabix';
 import { AnyConfigurationModel } from '@jbrowse/core/configuration';
 import PluginManager from '@jbrowse/core/PluginManager';
 import { getSubAdapterType } from '@jbrowse/core/data_adapters/dataAdapterCache';
-export default class extends BaseFeatureDataAdapter {
+export default class Gff3TabixAdapter extends BaseFeatureDataAdapter {
     protected gff: TabixIndexedFile;
     protected dontRedispatch: string[];
     constructor(config: AnyConfigurationModel, getSubAdapter?: getSubAdapterType, pluginManager?: PluginManager);

package/dist/Gff3TabixAdapter/Gff3TabixAdapter.js

@@ -12,7 +12,7 @@ const simpleFeature_1 = __importDefault(require("@jbrowse/core/util/simpleFeatur
 const tabix_1 = require("@gmod/tabix");
 const gff_1 = __importDefault(require("@gmod/gff"));
 const configuration_1 = require("@jbrowse/core/configuration");
-class default_1 extends BaseAdapter_1.BaseFeatureDataAdapter {
+class Gff3TabixAdapter extends BaseAdapter_1.BaseFeatureDataAdapter {
     constructor(config, getSubAdapter, pluginManager) {
         super(config, getSubAdapter, pluginManager);
         const gffGzLocation = (0, configuration_1.readConfObject)(config, 'gffGzLocation');
@@ -186,4 +186,4 @@ class default_1 extends BaseAdapter_1.BaseFeatureDataAdapter {
     }
     freeResources( /* { region } */) { }
 }
-exports.default = default_1;
+exports.default = Gff3TabixAdapter;

package/dist/Gff3TabixAdapter/index.d.ts

@@ -1,3 +1,2 @@
 import PluginManager from '@jbrowse/core/PluginManager';
-declare const _default: (pluginManager: PluginManager) => void;
-export default _default;
+export default function Gff3TabixAdapterF(pluginManager: PluginManager): void;

package/dist/Gff3TabixAdapter/index.js

@@ -28,11 +28,12 @@ var __importDefault = (this && this.__importDefault) || function (mod) {
 Object.defineProperty(exports, "__esModule", { value: true });
 const pluggableElementTypes_1 = require("@jbrowse/core/pluggableElementTypes");
 const configSchema_1 = __importDefault(require("./configSchema"));
-exports.default = (pluginManager) => {
+function Gff3TabixAdapterF(pluginManager) {
     pluginManager.addAdapterType(() => new pluggableElementTypes_1.AdapterType({
         name: 'Gff3TabixAdapter',
         displayName: 'GFF3 tabix adapter',
         configSchema: configSchema_1.default,
         getAdapterClass: () => Promise.resolve().then(() => __importStar(require('./Gff3TabixAdapter'))).then(r => r.default),
     }));
-};
+}
+exports.default = Gff3TabixAdapterF;

package/dist/GuessGff3/index.d.ts

@@ -1,3 +1,2 @@
 import PluginManager from '@jbrowse/core/PluginManager';
-declare const _default: (pluginManager: PluginManager) => void;
-export default _default;
+export default function GuessGff3F(pluginManager: PluginManager): void;

package/dist/GuessGff3/index.js

@@ -1,7 +1,7 @@
 "use strict";
 Object.defineProperty(exports, "__esModule", { value: true });
 const tracks_1 = require("@jbrowse/core/util/tracks");
-exports.default = (pluginManager) => {
+function GuessGff3F(pluginManager) {
     pluginManager.addToExtensionPoint('Core-guessAdapterForLocation', (adapterGuesser) => {
         return (file, index, adapterHint) => {
             const regexGuess = /\.gff3?\.b?gz$/i;
@@ -40,4 +40,5 @@ exports.default = (pluginManager) => {
             return adapterGuesser(file, index, adapterHint);
         };
     });
-};
+}
+exports.default = GuessGff3F;

package/dist/index.d.ts

@@ -1,6 +1,6 @@
 import PluginManager from '@jbrowse/core/PluginManager';
 import Plugin from '@jbrowse/core/Plugin';
-export default class extends Plugin {
+export default class GFF3Plugin extends Plugin {
     name: string;
     install(pluginManager: PluginManager): void;
 }

package/dist/index.js

@@ -7,7 +7,7 @@ const Plugin_1 = __importDefault(require("@jbrowse/core/Plugin"));
 const Gff3TabixAdapter_1 = __importDefault(require("./Gff3TabixAdapter"));
 const Gff3Adapter_1 = __importDefault(require("./Gff3Adapter"));
 const GuessGff3_1 = __importDefault(require("./GuessGff3"));
-class default_1 extends Plugin_1.default {
+class GFF3Plugin extends Plugin_1.default {
     constructor() {
         super(...arguments);
         this.name = 'GFF3Plugin';
@@ -18,4 +18,4 @@ class default_1 extends Plugin_1.default {
         (0, GuessGff3_1.default)(pluginManager);
     }
 }
-exports.default = default_1;
+exports.default = GFF3Plugin;

package/esm/Gff3Adapter/Gff3Adapter.d.ts

@@ -2,7 +2,7 @@ import { BaseFeatureDataAdapter, BaseOptions } from '@jbrowse/core/data_adapters
 import { NoAssemblyRegion } from '@jbrowse/core/util/types';
 import IntervalTree from '@flatten-js/interval-tree';
 import { Feature } from '@jbrowse/core/util/simpleFeature';
-export default class extends BaseFeatureDataAdapter {
+export default class Gff3Adapter extends BaseFeatureDataAdapter {
     protected gffFeatures?: Promise<{
         header: string;
         intervalTree: Record<string, IntervalTree>;

package/esm/Gff3Adapter/Gff3Adapter.js

@@ -8,7 +8,7 @@ import gff from '@gmod/gff';
 function isGzip(buf) {
     return buf[0] === 31 && buf[1] === 139 && buf[2] === 8;
 }
-export default class extends BaseFeatureDataAdapter {
+export default class Gff3Adapter extends BaseFeatureDataAdapter {
     async loadDataP() {
         const pm = this.pluginManager;
         const buf = await openLocation(this.getConf('gffLocation'), pm).readFile();

package/esm/Gff3Adapter/index.d.ts

@@ -1,3 +1,2 @@
 import PluginManager from '@jbrowse/core/PluginManager';
-declare const _default: (pluginManager: PluginManager) => void;
-export default _default;
+export default function Gff3AdapterF(pluginManager: PluginManager): void;

package/esm/Gff3Adapter/index.js

@@ -1,10 +1,10 @@
 import { AdapterType } from '@jbrowse/core/pluggableElementTypes';
 import configSchema from './configSchema';
-export default (pluginManager) => {
+export default function Gff3AdapterF(pluginManager) {
     pluginManager.addAdapterType(() => new AdapterType({
         name: 'Gff3Adapter',
         displayName: 'GFF3 adapter',
         configSchema,
         getAdapterClass: () => import('./Gff3Adapter').then(r => r.default),
     }));
-};
+}

package/esm/Gff3TabixAdapter/Gff3TabixAdapter.d.ts

@@ -5,7 +5,7 @@ import { TabixIndexedFile } from '@gmod/tabix';
 import { AnyConfigurationModel } from '@jbrowse/core/configuration';
 import PluginManager from '@jbrowse/core/PluginManager';
 import { getSubAdapterType } from '@jbrowse/core/data_adapters/dataAdapterCache';
-export default class extends BaseFeatureDataAdapter {
+export default class Gff3TabixAdapter extends BaseFeatureDataAdapter {
     protected gff: TabixIndexedFile;
     protected dontRedispatch: string[];
     constructor(config: AnyConfigurationModel, getSubAdapter?: getSubAdapterType, pluginManager?: PluginManager);

package/esm/Gff3TabixAdapter/Gff3TabixAdapter.js

@@ -7,7 +7,7 @@ import SimpleFeature from '@jbrowse/core/util/simpleFeature';
 import { TabixIndexedFile } from '@gmod/tabix';
 import gff from '@gmod/gff';
 import { readConfObject, } from '@jbrowse/core/configuration';
-export default class extends BaseFeatureDataAdapter {
+export default class Gff3TabixAdapter extends BaseFeatureDataAdapter {
     constructor(config, getSubAdapter, pluginManager) {
         super(config, getSubAdapter, pluginManager);
         const gffGzLocation = readConfObject(config, 'gffGzLocation');

package/esm/Gff3TabixAdapter/index.d.ts

@@ -1,3 +1,2 @@
 import PluginManager from '@jbrowse/core/PluginManager';
-declare const _default: (pluginManager: PluginManager) => void;
-export default _default;
+export default function Gff3TabixAdapterF(pluginManager: PluginManager): void;

package/esm/Gff3TabixAdapter/index.js

@@ -1,10 +1,10 @@
 import { AdapterType } from '@jbrowse/core/pluggableElementTypes';
 import configSchema from './configSchema';
-export default (pluginManager) => {
+export default function Gff3TabixAdapterF(pluginManager) {
     pluginManager.addAdapterType(() => new AdapterType({
         name: 'Gff3TabixAdapter',
         displayName: 'GFF3 tabix adapter',
         configSchema,
         getAdapterClass: () => import('./Gff3TabixAdapter').then(r => r.default),
     }));
-};
+}

package/esm/GuessGff3/index.d.ts

@@ -1,3 +1,2 @@
 import PluginManager from '@jbrowse/core/PluginManager';
-declare const _default: (pluginManager: PluginManager) => void;
-export default _default;
+export default function GuessGff3F(pluginManager: PluginManager): void;

package/esm/GuessGff3/index.js

@@ -1,5 +1,5 @@
 import { makeIndex, makeIndexType, getFileName, } from '@jbrowse/core/util/tracks';
-export default (pluginManager) => {
+export default function GuessGff3F(pluginManager) {
     pluginManager.addToExtensionPoint('Core-guessAdapterForLocation', (adapterGuesser) => {
         return (file, index, adapterHint) => {
             const regexGuess = /\.gff3?\.b?gz$/i;
@@ -38,4 +38,4 @@ export default (pluginManager) => {
             return adapterGuesser(file, index, adapterHint);
         };
     });
-};
+}

package/esm/index.d.ts

@@ -1,6 +1,6 @@
 import PluginManager from '@jbrowse/core/PluginManager';
 import Plugin from '@jbrowse/core/Plugin';
-export default class extends Plugin {
+export default class GFF3Plugin extends Plugin {
     name: string;
     install(pluginManager: PluginManager): void;
 }

package/esm/index.js

@@ -2,7 +2,7 @@ import Plugin from '@jbrowse/core/Plugin';
 import Gff3TabixAdapterF from './Gff3TabixAdapter';
 import Gff3AdapterF from './Gff3Adapter';
 import GuessGff3F from './GuessGff3';
-export default class extends Plugin {
+export default class GFF3Plugin extends Plugin {
     constructor() {
         super(...arguments);
         this.name = 'GFF3Plugin';

package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@jbrowse/plugin-gff3",
-  "version": "2.11.0",
+  "version": "2.11.1",
   "description": "JBrowse 2 gff3.",
   "keywords": [
     "jbrowse",
@@ -55,5 +55,5 @@
   "distModule": "esm/index.js",
   "srcModule": "src/index.ts",
   "module": "esm/index.js",
-  "gitHead": "3d43a820b9274a6160aa4dc15616147f390d9094"
+  "gitHead": "11b28d66d782eb06f92ccb993108bb6c3c82819e"
 }