@jbrowse/plugin-gff3 1.7.9 → 2.0.0
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/dist/Gff3Adapter/Gff3Adapter.js +284 -391
- package/dist/Gff3Adapter/Gff3Adapter.js.map +1 -0
- package/dist/Gff3Adapter/configSchema.js +9 -21
- package/dist/Gff3Adapter/configSchema.js.map +1 -0
- package/dist/Gff3Adapter/index.js +8 -14
- package/dist/Gff3Adapter/index.js.map +1 -0
- package/dist/Gff3TabixAdapter/Gff3TabixAdapter.js +305 -386
- package/dist/Gff3TabixAdapter/Gff3TabixAdapter.js.map +1 -0
- package/dist/Gff3TabixAdapter/configSchema.js +27 -40
- package/dist/Gff3TabixAdapter/configSchema.js.map +1 -0
- package/dist/Gff3TabixAdapter/index.js +8 -14
- package/dist/Gff3TabixAdapter/index.js.map +1 -0
- package/dist/index.js +109 -130
- package/dist/index.js.map +1 -0
- package/esm/Gff3Adapter/Gff3Adapter.d.ts +17 -0
- package/esm/Gff3Adapter/Gff3Adapter.js +146 -0
- package/esm/Gff3Adapter/Gff3Adapter.js.map +1 -0
- package/esm/Gff3Adapter/configSchema.d.ts +2 -0
- package/esm/Gff3Adapter/configSchema.js +8 -0
- package/esm/Gff3Adapter/configSchema.js.map +1 -0
- package/esm/Gff3Adapter/index.d.ts +1 -0
- package/esm/Gff3Adapter/index.js +2 -0
- package/esm/Gff3Adapter/index.js.map +1 -0
- package/esm/Gff3TabixAdapter/Gff3TabixAdapter.d.ts +20 -0
- package/esm/Gff3TabixAdapter/Gff3TabixAdapter.js +186 -0
- package/esm/Gff3TabixAdapter/Gff3TabixAdapter.js.map +1 -0
- package/esm/Gff3TabixAdapter/configSchema.d.ts +2 -0
- package/esm/Gff3TabixAdapter/configSchema.js +27 -0
- package/esm/Gff3TabixAdapter/configSchema.js.map +1 -0
- package/esm/Gff3TabixAdapter/index.d.ts +1 -0
- package/esm/Gff3TabixAdapter/index.js +2 -0
- package/esm/Gff3TabixAdapter/index.js.map +1 -0
- package/esm/index.d.ts +6 -0
- package/esm/index.js +62 -0
- package/esm/index.js.map +1 -0
- package/package.json +17 -9
- package/src/Gff3Adapter/Gff3Adapter.ts +5 -8
- package/dist/Gff3Adapter/Gff3Adapter.test.js +0 -71
- package/dist/Gff3TabixAdapter/Gff3TabixAdapter.test.js +0 -74
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{"version":3,"file":"Gff3Adapter.js","sourceRoot":"","sources":["../../src/Gff3Adapter/Gff3Adapter.ts"],"names":[],"mappings":";;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;AAAA,uEAGgD;AAEhD,4CAAoD;AACpD,gDAA0D;AAC1D,4EAAoD;AACpD,mFAAyE;AACzE,yDAA6C;AAE7C,kDAAwD;AAExD,SAAS,MAAM,CAAC,GAAW;IACzB,OAAO,GAAG,CAAC,CAAC,CAAC,KAAK,EAAE,IAAI,GAAG,CAAC,CAAC,CAAC,KAAK,GAAG,IAAI,GAAG,CAAC,CAAC,CAAC,KAAK,CAAC,CAAA;AACxD,CAAC;AAED;IAA6B,6BAAsB;IAAnD;;IAsJA,CAAC;IAhJe,6BAAS,GAAvB;;;;;;;wBACQ,EAAE,GAAG,IAAI,CAAC,aAAa,CAAA;wBACjB,qBAAM,IAAA,iBAAY,EAAC,IAAI,CAAC,OAAO,CAAC,aAAa,CAAC,EAAE,EAAE,CAAC,CAAC,QAAQ,EAAE,EAAA;;wBAApE,GAAG,GAAG,SAA8D;6BAC3D,MAAM,CAAC,GAAG,CAAC,EAAX,wBAAW;wBAAG,qBAAM,IAAA,uBAAK,EAAC,GAAG,CAAC,EAAA;;wBAAhB,KAAA,SAAgB,CAAA;;;wBAAG,KAAA,GAAG,CAAA;;;wBAA7C,MAAM,KAAuC;wBACnD,2CAA2C;wBAC3C,IAAI,MAAM,CAAC,MAAM,GAAG,SAAW,EAAE;4BAC/B,MAAM,IAAI,KAAK,CAAC,4CAA4C,CAAC,CAAA;yBAC9D;wBACK,IAAI,GAAG,IAAI,WAAW,CAAC,MAAM,EAAE,EAAE,KAAK,EAAE,IAAI,EAAE,CAAC,CAAC,MAAM,CAAC,MAAM,CAAC,CAAA;wBAC9D,KAAK,GAAG,IAAI,CAAC,KAAK,CAAC,IAAI,CAAC,CAAA;wBACxB,WAAW,GAAG,EAAE,CAAA;wBACtB,KAAS,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,KAAK,CAAC,MAAM,IAAI,KAAK,CAAC,CAAC,CAAC,CAAC,UAAU,CAAC,GAAG,CAAC,EAAE,CAAC,EAAE,EAAE;4BACjE,WAAW,CAAC,IAAI,CAAC,KAAK,CAAC,CAAC,CAAC,CAAC,CAAA;yBAC3B;wBACK,MAAM,GAAG,WAAW,CAAC,IAAI,CAAC,IAAI,CAAC,CAAA;wBAE/B,KAAK,GAAG,aAAG,CAAC,eAAe,CAAC,IAAI,EAAE;4BACtC,aAAa,EAAE,IAAI;4BACnB,aAAa,EAAE,KAAK;4BACpB,eAAe,EAAE,KAAK;4BACtB,cAAc,EAAE,KAAK;yBACtB,CAAC,CAAA;wBAEI,YAAY,GAAG,KAAK;6BACvB,IAAI,EAAE;6BACN,GAAG,CACF,UAAC,CAAC,EAAE,CAAC;4BACH,OAAA,IAAI,uBAAa,CAAC;gCAChB,IAAI,EAAE,KAAI,CAAC,WAAW,CAAC,CAAC,CAAC;gCACzB,EAAE,EAAE,UAAG,KAAI,CAAC,EAAE,qBAAW,CAAC,CAAE;6BAC7B,CAAC;wBAHF,CAGE,CACL;6BACA,MAAM,CAAC,UAAC,GAAG,EAAE,GAAG;4BACf,IAAM,GAAG,GAAG,GAAG,CAAC,GAAG,CAAC,SAAS,CAAC,CAAA;4BAC9B,IAAI,CAAC,GAAG,CAAC,GAAG,CAAC,EAAE;gCACb,GAAG,CAAC,GAAG,CAAC,GAAG,IAAI,uBAAY,EAAE,CAAA;6BAC9B;4BACD,GAAG,CAAC,GAAG,CAAC,CAAC,MAAM,CAAC,CAAC,GAAG,CAAC,GAAG,CAAC,OAAO,CAAC,EAAE,GAAG,CAAC,GAAG,CAAC,KAAK,CAAC,CAAC,EAAE,GAAG,CAAC,CAAA;4BACxD,OAAO,GAAG,CAAA;wBACZ,CAAC,EAAE,EAAkC,CAAC,CAAA;wBAExC,sBAAO,EAAE,MAAM,QAAA,EAAE,YAAY,cAAA,EAAE,EAAA;;;;KAChC;IAEa,4BAAQ,GAAtB;;;;gBACE,IAAI,CAAC,IAAI,CAAC,WAAW,EAAE;oBACrB,IAAI,CAAC,WAAW,GAAG,IAAI,CAAC,SAAS,EAAE,CAAC,KAAK,CAAC,UAAA,CAAC;wBACzC,KAAI,CAAC,WAAW,GAAG,SAAS,CAAA;wBAC5B,MAAM,CAAC,CAAA;oBACT,CAAC,CAAC,CAAA;iBACH;gBAED,sBAAO,IAAI,CAAC,WAAW,EAAA;;;KACxB;IAEY,+BAAW,GAAxB,UAAyB,IAAsB;QAAtB,qBAAA,EAAA,SAAsB;;;;;4BACpB,qBAAM,IAAI,CAAC,QAAQ,EAAE,EAAA;;wBAAtC,YAAY,GAAK,CAAA,SAAqB,CAAA,aAA1B;wBACpB,sBAAO,MAAM,CAAC,IAAI,CAAC,YAAY,CAAC,EAAA;;;;KACjC;IAEY,6BAAS,GAAtB;;;;;4BACqB,qBAAM,IAAI,CAAC,QAAQ,EAAE,EAAA;;wBAAhC,MAAM,GAAK,CAAA,SAAqB,CAAA,OAA1B;wBACd,sBAAO,MAAM,EAAA;;;;KACd;IAEM,+BAAW,GAAlB,UAAmB,KAAuB,EAAE,IAAsB;QAAlE,iBAaC;QAb2C,qBAAA,EAAA,SAAsB;QAChE,OAAO,IAAA,uBAAgB,EAAU,UAAM,QAAQ;;;;;;;wBAEnC,KAAK,GAAmB,KAAK,MAAxB,EAAE,GAAG,GAAc,KAAK,IAAnB,EAAE,OAAO,GAAK,KAAK,QAAV,CAAU;wBACZ,qBAAM,IAAI,CAAC,QAAQ,EAAE,EAAA;;wBAAtC,YAAY,GAAK,CAAA,SAAqB,CAAA,aAA1B;wBACpB,MAAA,YAAY,CAAC,OAAO,CAAC,0CACjB,MAAM,CAAC,CAAC,KAAK,EAAE,GAAG,CAAC,EACpB,OAAO,CAAC,UAAA,CAAC,IAAI,OAAA,QAAQ,CAAC,IAAI,CAAC,CAAC,CAAC,EAAhB,CAAgB,CAAC,CAAA;wBACjC,QAAQ,CAAC,QAAQ,EAAE,CAAA;;;;wBAEnB,QAAQ,CAAC,KAAK,CAAC,GAAC,CAAC,CAAA;;;;;aAEpB,EAAE,IAAI,CAAC,MAAM,CAAC,CAAA;IACjB,CAAC;IAEO,+BAAW,GAAnB,UAAoB,IAA6B;QAAjD,iBA6DC;QA5DC,IAAM,CAAC,gBAAiC,IAAI,CAAE,CAC7C;QAAC,CAAC,CAAC,KAAgB,IAAI,CAAC,CAAA,CAAC,uBAAuB;QACjD,IAAI,IAAI,CAAC,MAAM,KAAK,GAAG,EAAE;YACvB,CAAC,CAAC,MAAM,GAAG,CAAC,CAAA;SACb;aAAM,IAAI,IAAI,CAAC,MAAM,KAAK,GAAG,EAAE;YAC9B,CAAC,CAAC,MAAM,GAAG,CAAC,CAAC,CAAA;SACd;aAAM,IAAI,IAAI,CAAC,MAAM,KAAK,GAAG,EAAE;YAC9B,CAAC,CAAC,MAAM,GAAG,CAAC,CAAA;SACb;aAAM;YACL,CAAC,CAAC,MAAM,GAAG,SAAS,CAAA;SACrB;QACD,CAAC,CAAC,KAAK,GAAG,MAAM,CAAC,IAAI,CAAC,KAAK,CAAC,CAAA;QAC5B,CAAC,CAAC,OAAO,GAAG,IAAI,CAAC,MAAM,CAAA;QACvB,IAAI,IAAI,CAAC,KAAK,KAAK,IAAI,EAAE;YACvB,OAAO,CAAC,CAAC,KAAK,CAAA;SACf;QACD,IAAI,IAAI,CAAC,KAAK,KAAK,IAAI,EAAE;YACvB,OAAO,CAAC,CAAC,KAAK,CAAA;SACf;QACD,IAAM,aAAa,GAAG;YACpB,OAAO;YACP,KAAK;YACL,QAAQ;YACR,OAAO;YACP,MAAM;YACN,QAAQ;YACR,OAAO;YACP,QAAQ;SACT,CAAA;QACD,IAAM,cAAc,GAAG,IAAI,CAAC,UAAU,IAAI,EAAE,CAAA;QAC5C,MAAM,CAAC,IAAI,CAAC,cAAc,CAAC,CAAC,OAAO,CAAC,UAAA,CAAC;;YACnC,IAAI,CAAC,GAAG,CAAC,CAAC,WAAW,EAAE,CAAA;YACvB,IAAI,aAAa,CAAC,QAAQ,CAAC,CAAC,CAAC,EAAE;gBAC7B,gDAAgD;gBAChD,gCAAgC;gBAChC,CAAC,IAAI,GAAG,CAAA;aACT;YACD,IAAI,cAAc,CAAC,CAAC,CAAC,KAAK,IAAI,EAAE;gBAC9B,IAAI,IAAI,GAAkC,cAAc,CAAC,CAAC,CAAC,CAAA;gBAC3D,IAAI,KAAK,CAAC,OAAO,CAAC,IAAI,CAAC,IAAI,IAAI,CAAC,MAAM,KAAK,CAAC,EAAE;oBAC5C,CAAC;oBAAA,KAAS,IAAI,EAAb,KAAA,aAAa,EAAZ,IAAI,QAAA,CAAQ;iBACf;gBACD,CAAC,CAAC,CAAC,CAAC,GAAG,IAAI,CAAA;aACZ;QACH,CAAC,CAAC,CAAA;QACF,CAAC,CAAC,OAAO,GAAG,CAAC,CAAC,MAAM,CAAA;QAEpB,gFAAgF;QAChF,IAAI,IAAI,CAAC,cAAc,IAAI,IAAI,CAAC,cAAc,CAAC,MAAM,EAAE;YACrD,CAAC,CAAC,WAAW,GAAG,IAAI,CAAC,cAAc;iBAChC,GAAG,CAAC,UAAA,SAAS,IAAI,OAAA,SAAS,CAAC,GAAG,CAAC,UAAA,QAAQ,IAAI,OAAA,KAAI,CAAC,WAAW,CAAC,QAAQ,CAAC,EAA1B,CAA0B,CAAC,EAArD,CAAqD,CAAC;iBACvE,IAAI,EAAE,CAAA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var configuration_1 = require("@jbrowse/core/configuration");
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exports.default = (0, configuration_1.ConfigurationSchema)('Gff3Adapter', {
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gffLocation: {
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{"version":3,"file":"configSchema.js","sourceRoot":"","sources":["../../src/Gff3Adapter/configSchema.ts"],"names":[],"mappings":";;AAAA,6DAAiE;AAEjE,kBAAe,IAAA,mCAAmB,EAChC,aAAa,EACb;IACE,WAAW,EAAE;QACX,IAAI,EAAE,cAAc;QACpB,YAAY,EAAE,EAAE,GAAG,EAAE,iBAAiB,EAAE,YAAY,EAAE,aAAa,EAAE;KACtE;CACF,EACD,EAAE,eAAe,EAAE,IAAI,EAAE,CAC1B,CAAA"}
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{"version":3,"file":"index.js","sourceRoot":"","sources":["../../src/Gff3Adapter/index.ts"],"names":[],"mappings":";;;;;;AAAA,+CAAwD;AAA/C,6HAAA,OAAO,OAAgB"}
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