@jbrowse/plugin-gff3 1.7.1 → 1.7.5

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Files changed (10) hide show
  1. package/dist/Gff3Adapter/Gff3Adapter.js +23 -23
  2. package/dist/Gff3Adapter/Gff3Adapter.test.js +3 -3
  3. package/dist/Gff3Adapter/configSchema.js +2 -2
  4. package/dist/Gff3Adapter/index.js +1 -1
  5. package/dist/Gff3TabixAdapter/Gff3TabixAdapter.js +20 -20
  6. package/dist/Gff3TabixAdapter/Gff3TabixAdapter.test.js +3 -3
  7. package/dist/Gff3TabixAdapter/configSchema.js +2 -2
  8. package/dist/Gff3TabixAdapter/index.js +1 -1
  9. package/dist/index.js +13 -13
  10. package/package.json +4 -4
package/dist/Gff3Adapter/Gff3Adapter.js CHANGED
@@ -5,7 +5,7 @@ var _interopRequireDefault = require("@babel/runtime/helpers/interopRequireDefau
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  Object.defineProperty(exports, "__esModule", {
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  value: true
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  });
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- exports["default"] = void 0;
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+ exports.default = void 0;
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  var _regenerator = _interopRequireDefault(require("@babel/runtime/regenerator"));
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@@ -45,9 +45,9 @@ var _gff = _interopRequireDefault(require("@gmod/gff"));
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  function ownKeys(object, enumerableOnly) { var keys = Object.keys(object); if (Object.getOwnPropertySymbols) { var symbols = Object.getOwnPropertySymbols(object); enumerableOnly && (symbols = symbols.filter(function (sym) { return Object.getOwnPropertyDescriptor(object, sym).enumerable; })), keys.push.apply(keys, symbols); } return keys; }
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- function _objectSpread(target) { for (var i = 1; i < arguments.length; i++) { var source = null != arguments[i] ? arguments[i] : {}; i % 2 ? ownKeys(Object(source), !0).forEach(function (key) { (0, _defineProperty2["default"])(target, key, source[key]); }) : Object.getOwnPropertyDescriptors ? Object.defineProperties(target, Object.getOwnPropertyDescriptors(source)) : ownKeys(Object(source)).forEach(function (key) { Object.defineProperty(target, key, Object.getOwnPropertyDescriptor(source, key)); }); } return target; }
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+ function _objectSpread(target) { for (var i = 1; i < arguments.length; i++) { var source = null != arguments[i] ? arguments[i] : {}; i % 2 ? ownKeys(Object(source), !0).forEach(function (key) { (0, _defineProperty2.default)(target, key, source[key]); }) : Object.getOwnPropertyDescriptors ? Object.defineProperties(target, Object.getOwnPropertyDescriptors(source)) : ownKeys(Object(source)).forEach(function (key) { Object.defineProperty(target, key, Object.getOwnPropertyDescriptor(source, key)); }); } return target; }
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- function _createSuper(Derived) { var hasNativeReflectConstruct = _isNativeReflectConstruct(); return function _createSuperInternal() { var Super = (0, _getPrototypeOf2["default"])(Derived), result; if (hasNativeReflectConstruct) { var NewTarget = (0, _getPrototypeOf2["default"])(this).constructor; result = Reflect.construct(Super, arguments, NewTarget); } else { result = Super.apply(this, arguments); } return (0, _possibleConstructorReturn2["default"])(this, result); }; }
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+ function _createSuper(Derived) { var hasNativeReflectConstruct = _isNativeReflectConstruct(); return function _createSuperInternal() { var Super = (0, _getPrototypeOf2.default)(Derived), result; if (hasNativeReflectConstruct) { var NewTarget = (0, _getPrototypeOf2.default)(this).constructor; result = Reflect.construct(Super, arguments, NewTarget); } else { result = Super.apply(this, arguments); } return (0, _possibleConstructorReturn2.default)(this, result); }; }
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  function _isNativeReflectConstruct() { if (typeof Reflect === "undefined" || !Reflect.construct) return false; if (Reflect.construct.sham) return false; if (typeof Proxy === "function") return true; try { Boolean.prototype.valueOf.call(Reflect.construct(Boolean, [], function () {})); return true; } catch (e) { return false; } }
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@@ -56,32 +56,32 @@ function isGzip(buf) {
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  }
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  var _default = /*#__PURE__*/function (_BaseFeatureDataAdapt) {
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- (0, _inherits2["default"])(_default, _BaseFeatureDataAdapt);
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+ (0, _inherits2.default)(_default, _BaseFeatureDataAdapt);
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  var _super = _createSuper(_default);
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  function _default() {
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  var _this;
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- (0, _classCallCheck2["default"])(this, _default);
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+ (0, _classCallCheck2.default)(this, _default);
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  for (var _len = arguments.length, args = new Array(_len), _key = 0; _key < _len; _key++) {
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  args[_key] = arguments[_key];
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  }
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  _this = _super.call.apply(_super, [this].concat(args));
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- (0, _defineProperty2["default"])((0, _assertThisInitialized2["default"])(_this), "gffFeatures", void 0);
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+ (0, _defineProperty2.default)((0, _assertThisInitialized2.default)(_this), "gffFeatures", void 0);
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  return _this;
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  }
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- (0, _createClass2["default"])(_default, [{
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+ (0, _createClass2.default)(_default, [{
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  key: "loadDataP",
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  value: function () {
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- var _loadDataP = (0, _asyncToGenerator2["default"])( /*#__PURE__*/_regenerator["default"].mark(function _callee() {
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+ var _loadDataP = (0, _asyncToGenerator2.default)( /*#__PURE__*/_regenerator.default.mark(function _callee() {
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  var _this2 = this;
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  var buffer, buf, data, lines, headerLines, i, header, feats, intervalTree;
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- return _regenerator["default"].wrap(function _callee$(_context) {
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+ return _regenerator.default.wrap(function _callee$(_context) {
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  while (1) {
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  switch (_context.prev = _context.next) {
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  case 0:
@@ -129,14 +129,14 @@ var _default = /*#__PURE__*/function (_BaseFeatureDataAdapt) {
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  }
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  header = headerLines.join('\n');
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- feats = _gff["default"].parseStringSync(data, {
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+ feats = _gff.default.parseStringSync(data, {
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  parseFeatures: true,
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  parseComments: false,
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  parseDirectives: false,
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  parseSequences: false
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  });
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  intervalTree = feats.flat().map(function (f, i) {
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- return new _simpleFeature["default"]({
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+ return new _simpleFeature.default({
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  data: _this2.featureData(f),
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  id: "".concat(_this2.id, "-offset-").concat(i)
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  });
@@ -144,7 +144,7 @@ var _default = /*#__PURE__*/function (_BaseFeatureDataAdapt) {
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  var key = obj.get('refName');
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  if (!acc[key]) {
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- acc[key] = new _intervalTree["default"]();
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+ acc[key] = new _intervalTree.default();
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  }
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  acc[key].insert([obj.get('start'), obj.get('end')], obj);
@@ -172,15 +172,15 @@ var _default = /*#__PURE__*/function (_BaseFeatureDataAdapt) {
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  }, {
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  key: "loadData",
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  value: function () {
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- var _loadData = (0, _asyncToGenerator2["default"])( /*#__PURE__*/_regenerator["default"].mark(function _callee2() {
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+ var _loadData = (0, _asyncToGenerator2.default)( /*#__PURE__*/_regenerator.default.mark(function _callee2() {
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  var _this3 = this;
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- return _regenerator["default"].wrap(function _callee2$(_context2) {
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+ return _regenerator.default.wrap(function _callee2$(_context2) {
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  while (1) {
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  switch (_context2.prev = _context2.next) {
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  case 0:
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  if (!this.gffFeatures) {
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- this.gffFeatures = this.loadDataP()["catch"](function (e) {
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+ this.gffFeatures = this.loadDataP().catch(function (e) {
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  _this3.gffFeatures = undefined;
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  throw e;
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  });
@@ -205,13 +205,13 @@ var _default = /*#__PURE__*/function (_BaseFeatureDataAdapt) {
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  }, {
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  key: "getRefNames",
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  value: function () {
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- var _getRefNames = (0, _asyncToGenerator2["default"])( /*#__PURE__*/_regenerator["default"].mark(function _callee3() {
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+ var _getRefNames = (0, _asyncToGenerator2.default)( /*#__PURE__*/_regenerator.default.mark(function _callee3() {
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  var opts,
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  _yield$this$loadData,
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  intervalTree,
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  _args3 = arguments;
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- return _regenerator["default"].wrap(function _callee3$(_context3) {
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+ return _regenerator.default.wrap(function _callee3$(_context3) {
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  while (1) {
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  switch (_context3.prev = _context3.next) {
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  case 0:
@@ -241,10 +241,10 @@ var _default = /*#__PURE__*/function (_BaseFeatureDataAdapt) {
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  }, {
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  key: "getHeader",
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  value: function () {
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- var _getHeader = (0, _asyncToGenerator2["default"])( /*#__PURE__*/_regenerator["default"].mark(function _callee4() {
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+ var _getHeader = (0, _asyncToGenerator2.default)( /*#__PURE__*/_regenerator.default.mark(function _callee4() {
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  var _yield$this$loadData2, header;
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- return _regenerator["default"].wrap(function _callee4$(_context4) {
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+ return _regenerator.default.wrap(function _callee4$(_context4) {
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  while (1) {
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  switch (_context4.prev = _context4.next) {
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  case 0:
@@ -277,10 +277,10 @@ var _default = /*#__PURE__*/function (_BaseFeatureDataAdapt) {
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  var opts = arguments.length > 1 && arguments[1] !== undefined ? arguments[1] : {};
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  return (0, _rxjs.ObservableCreate)( /*#__PURE__*/function () {
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- var _ref = (0, _asyncToGenerator2["default"])( /*#__PURE__*/_regenerator["default"].mark(function _callee5(observer) {
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+ var _ref = (0, _asyncToGenerator2.default)( /*#__PURE__*/_regenerator.default.mark(function _callee5(observer) {
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  var _intervalTree$refName, start, end, refName, _yield$_this4$loadDat, intervalTree;
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- return _regenerator["default"].wrap(function _callee5$(_context5) {
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+ return _regenerator.default.wrap(function _callee5$(_context5) {
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  while (1) {
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  switch (_context5.prev = _context5.next) {
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  case 0:
@@ -365,7 +365,7 @@ var _default = /*#__PURE__*/function (_BaseFeatureDataAdapt) {
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  ;
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  var _attr = attr;
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- var _attr2 = (0, _slicedToArray2["default"])(_attr, 1);
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+ var _attr2 = (0, _slicedToArray2.default)(_attr, 1);
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  attr = _attr2[0];
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  }
@@ -399,4 +399,4 @@ var _default = /*#__PURE__*/function (_BaseFeatureDataAdapt) {
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  return _default;
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  }(_BaseAdapter.BaseFeatureDataAdapter);
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- exports["default"] = _default;
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+ exports.default = _default;
package/dist/Gff3Adapter/Gff3Adapter.test.js CHANGED
@@ -18,15 +18,15 @@ window.TextDecoder = _webEncoding.TextDecoder;
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  describe('adapter can fetch features from volvox.gff3', function () {
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  var adapter;
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  beforeEach(function () {
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- adapter = new _Gff3Adapter["default"](_configSchema["default"].create({
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+ adapter = new _Gff3Adapter.default(_configSchema.default.create({
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  gffLocation: {
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  localPath: require.resolve('../test_data/volvox.sort.gff3')
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  }
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  }));
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  });
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- it('test getfeatures on gff plain text adapter', /*#__PURE__*/(0, _asyncToGenerator2["default"])( /*#__PURE__*/_regenerator["default"].mark(function _callee() {
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+ it('test getfeatures on gff plain text adapter', /*#__PURE__*/(0, _asyncToGenerator2.default)( /*#__PURE__*/_regenerator.default.mark(function _callee() {
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  var features, featuresArray, featuresJsonArray;
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- return _regenerator["default"].wrap(function _callee$(_context) {
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+ return _regenerator.default.wrap(function _callee$(_context) {
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  while (1) {
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  switch (_context.prev = _context.next) {
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  case 0:
package/dist/Gff3Adapter/configSchema.js CHANGED
@@ -3,7 +3,7 @@
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  Object.defineProperty(exports, "__esModule", {
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  value: true
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  });
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- exports["default"] = void 0;
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+ exports.default = void 0;
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  var _configuration = require("@jbrowse/core/configuration");
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@@ -19,4 +19,4 @@ var _default = (0, _configuration.ConfigurationSchema)('Gff3Adapter', {
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  explicitlyTyped: true
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  });
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- exports["default"] = _default;
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+ exports.default = _default;
package/dist/Gff3Adapter/index.js CHANGED
@@ -8,7 +8,7 @@ Object.defineProperty(exports, "__esModule", {
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  Object.defineProperty(exports, "configSchema", {
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  enumerable: true,
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  get: function get() {
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- return _configSchema["default"];
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+ return _configSchema.default;
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  }
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  });
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package/dist/Gff3TabixAdapter/Gff3TabixAdapter.js CHANGED
@@ -5,7 +5,7 @@ var _interopRequireDefault = require("@babel/runtime/helpers/interopRequireDefau
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  Object.defineProperty(exports, "__esModule", {
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  value: true
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  });
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- exports["default"] = void 0;
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+ exports.default = void 0;
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  var _regenerator = _interopRequireDefault(require("@babel/runtime/regenerator"));
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@@ -45,24 +45,24 @@ var _configuration = require("@jbrowse/core/configuration");
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  function ownKeys(object, enumerableOnly) { var keys = Object.keys(object); if (Object.getOwnPropertySymbols) { var symbols = Object.getOwnPropertySymbols(object); enumerableOnly && (symbols = symbols.filter(function (sym) { return Object.getOwnPropertyDescriptor(object, sym).enumerable; })), keys.push.apply(keys, symbols); } return keys; }
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- function _objectSpread(target) { for (var i = 1; i < arguments.length; i++) { var source = null != arguments[i] ? arguments[i] : {}; i % 2 ? ownKeys(Object(source), !0).forEach(function (key) { (0, _defineProperty2["default"])(target, key, source[key]); }) : Object.getOwnPropertyDescriptors ? Object.defineProperties(target, Object.getOwnPropertyDescriptors(source)) : ownKeys(Object(source)).forEach(function (key) { Object.defineProperty(target, key, Object.getOwnPropertyDescriptor(source, key)); }); } return target; }
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+ function _objectSpread(target) { for (var i = 1; i < arguments.length; i++) { var source = null != arguments[i] ? arguments[i] : {}; i % 2 ? ownKeys(Object(source), !0).forEach(function (key) { (0, _defineProperty2.default)(target, key, source[key]); }) : Object.getOwnPropertyDescriptors ? Object.defineProperties(target, Object.getOwnPropertyDescriptors(source)) : ownKeys(Object(source)).forEach(function (key) { Object.defineProperty(target, key, Object.getOwnPropertyDescriptor(source, key)); }); } return target; }
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- function _createSuper(Derived) { var hasNativeReflectConstruct = _isNativeReflectConstruct(); return function _createSuperInternal() { var Super = (0, _getPrototypeOf2["default"])(Derived), result; if (hasNativeReflectConstruct) { var NewTarget = (0, _getPrototypeOf2["default"])(this).constructor; result = Reflect.construct(Super, arguments, NewTarget); } else { result = Super.apply(this, arguments); } return (0, _possibleConstructorReturn2["default"])(this, result); }; }
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+ function _createSuper(Derived) { var hasNativeReflectConstruct = _isNativeReflectConstruct(); return function _createSuperInternal() { var Super = (0, _getPrototypeOf2.default)(Derived), result; if (hasNativeReflectConstruct) { var NewTarget = (0, _getPrototypeOf2.default)(this).constructor; result = Reflect.construct(Super, arguments, NewTarget); } else { result = Super.apply(this, arguments); } return (0, _possibleConstructorReturn2.default)(this, result); }; }
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  function _isNativeReflectConstruct() { if (typeof Reflect === "undefined" || !Reflect.construct) return false; if (Reflect.construct.sham) return false; if (typeof Proxy === "function") return true; try { Boolean.prototype.valueOf.call(Reflect.construct(Boolean, [], function () {})); return true; } catch (e) { return false; } }
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  var _default = /*#__PURE__*/function (_BaseFeatureDataAdapt) {
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- (0, _inherits2["default"])(_default, _BaseFeatureDataAdapt);
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+ (0, _inherits2.default)(_default, _BaseFeatureDataAdapt);
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  var _super = _createSuper(_default);
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  function _default(config, getSubAdapter, pluginManager) {
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  var _this;
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- (0, _classCallCheck2["default"])(this, _default);
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+ (0, _classCallCheck2.default)(this, _default);
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  _this = _super.call(this, config, getSubAdapter, pluginManager);
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- (0, _defineProperty2["default"])((0, _assertThisInitialized2["default"])(_this), "gff", void 0);
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- (0, _defineProperty2["default"])((0, _assertThisInitialized2["default"])(_this), "dontRedispatch", void 0);
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+ (0, _defineProperty2.default)((0, _assertThisInitialized2.default)(_this), "gff", void 0);
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+ (0, _defineProperty2.default)((0, _assertThisInitialized2.default)(_this), "dontRedispatch", void 0);
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  var gffGzLocation = (0, _configuration.readConfObject)(config, 'gffGzLocation');
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  var indexType = (0, _configuration.readConfObject)(config, ['index', 'indexType']);
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  var location = (0, _configuration.readConfObject)(config, ['index', 'location']);
@@ -80,13 +80,13 @@ var _default = /*#__PURE__*/function (_BaseFeatureDataAdapt) {
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  return _this;
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  }
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+ (0, _createClass2.default)(_default, [{
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  key: "getRefNames",
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  value: function () {
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- var _getRefNames = (0, _asyncToGenerator2["default"])( /*#__PURE__*/_regenerator["default"].mark(function _callee() {
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+ var _getRefNames = (0, _asyncToGenerator2.default)( /*#__PURE__*/_regenerator.default.mark(function _callee() {
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  var opts,
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  _args = arguments;
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- return _regenerator["default"].wrap(function _callee$(_context) {
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+ return _regenerator.default.wrap(function _callee$(_context) {
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  while (1) {
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  switch (_context.prev = _context.next) {
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  case 0:
@@ -110,8 +110,8 @@ var _default = /*#__PURE__*/function (_BaseFeatureDataAdapt) {
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  }, {
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  key: "getHeader",
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  value: function () {
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- var _getHeader = (0, _asyncToGenerator2["default"])( /*#__PURE__*/_regenerator["default"].mark(function _callee2() {
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- return _regenerator["default"].wrap(function _callee2$(_context2) {
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+ var _getHeader = (0, _asyncToGenerator2.default)( /*#__PURE__*/_regenerator.default.mark(function _callee2() {
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+ return _regenerator.default.wrap(function _callee2$(_context2) {
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  while (1) {
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  switch (_context2.prev = _context2.next) {
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@@ -138,9 +138,9 @@ var _default = /*#__PURE__*/function (_BaseFeatureDataAdapt) {
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  var opts = arguments.length > 1 && arguments[1] !== undefined ? arguments[1] : {};
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  return (0, _rxjs.ObservableCreate)( /*#__PURE__*/function () {
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- var _ref = (0, _asyncToGenerator2["default"])( /*#__PURE__*/_regenerator["default"].mark(function _callee3(observer) {
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+ var _ref = (0, _asyncToGenerator2.default)( /*#__PURE__*/_regenerator.default.mark(function _callee3(observer) {
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  var metadata;
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- return _regenerator["default"].wrap(function _callee3$(_context3) {
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+ return _regenerator.default.wrap(function _callee3$(_context3) {
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@@ -168,7 +168,7 @@ var _default = /*#__PURE__*/function (_BaseFeatureDataAdapt) {
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  }, {
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  key: "getFeaturesHelper",
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  value: function () {
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- var _getFeaturesHelper = (0, _asyncToGenerator2["default"])( /*#__PURE__*/_regenerator["default"].mark(function _callee4(query) {
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+ var _getFeaturesHelper = (0, _asyncToGenerator2.default)( /*#__PURE__*/_regenerator.default.mark(function _callee4(query) {
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  var _this3 = this;
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  var opts,
@@ -182,7 +182,7 @@ var _default = /*#__PURE__*/function (_BaseFeatureDataAdapt) {
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  gff3,
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  features,
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  _args4 = arguments;
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- return _regenerator["default"].wrap(function _callee4$(_context4) {
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+ return _regenerator.default.wrap(function _callee4$(_context4) {
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  while (1) {
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  switch (_context4.prev = _context4.next) {
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  case 0:
@@ -248,7 +248,7 @@ var _default = /*#__PURE__*/function (_BaseFeatureDataAdapt) {
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  return lineRecord.fields.join('\t');
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  }).join('\n');
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- features = _gff["default"].parseStringSync(gff3, {
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+ features = _gff.default.parseStringSync(gff3, {
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  parseFeatures: true,
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  parseComments: false,
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  parseDirectives: false,
@@ -302,7 +302,7 @@ var _default = /*#__PURE__*/function (_BaseFeatureDataAdapt) {
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  var _this4 = this;
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  return featureLocs.map(function (featureLoc) {
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- return new _simpleFeature["default"]({
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+ return new _simpleFeature.default({
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  data: _this4.featureData(featureLoc),
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  // eslint-disable-next-line @typescript-eslint/no-non-null-assertion
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  id: "".concat(_this4.id, "-offset-").concat(featureLoc.attributes._lineHash[0])
@@ -357,7 +357,7 @@ var _default = /*#__PURE__*/function (_BaseFeatureDataAdapt) {
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  ;
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  var _attr = attr;
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359
 
360
- var _attr2 = (0, _slicedToArray2["default"])(_attr, 1);
360
+ var _attr2 = (0, _slicedToArray2.default)(_attr, 1);
361
361
 
362
362
  attr = _attr2[0];
363
363
  }
@@ -392,4 +392,4 @@ var _default = /*#__PURE__*/function (_BaseFeatureDataAdapt) {
392
392
  return _default;
393
393
  }(_BaseAdapter.BaseFeatureDataAdapter);
394
394
 
395
- exports["default"] = _default;
395
+ exports.default = _default;
package/dist/Gff3TabixAdapter/Gff3TabixAdapter.test.js CHANGED
@@ -15,7 +15,7 @@ var _Gff3TabixAdapter = _interopRequireDefault(require("./Gff3TabixAdapter"));
15
15
  describe('adapter can fetch features from volvox.gff3', function () {
16
16
  var adapter;
17
17
  beforeEach(function () {
18
- adapter = new _Gff3TabixAdapter["default"](_configSchema["default"].create({
18
+ adapter = new _Gff3TabixAdapter.default(_configSchema.default.create({
19
19
  gffGzLocation: {
20
20
  localPath: require.resolve('../test_data/volvox.sort.gff3.gz')
21
21
  },
@@ -26,9 +26,9 @@ describe('adapter can fetch features from volvox.gff3', function () {
26
26
  }
27
27
  }));
28
28
  });
29
- it('test getfeatures on gff plain text adapter', /*#__PURE__*/(0, _asyncToGenerator2["default"])( /*#__PURE__*/_regenerator["default"].mark(function _callee() {
29
+ it('test getfeatures on gff plain text adapter', /*#__PURE__*/(0, _asyncToGenerator2.default)( /*#__PURE__*/_regenerator.default.mark(function _callee() {
30
30
  var features, featuresArray, featuresJsonArray;
31
- return _regenerator["default"].wrap(function _callee$(_context) {
31
+ return _regenerator.default.wrap(function _callee$(_context) {
32
32
  while (1) {
33
33
  switch (_context.prev = _context.next) {
34
34
  case 0:
package/dist/Gff3TabixAdapter/configSchema.js CHANGED
@@ -3,7 +3,7 @@
3
3
  Object.defineProperty(exports, "__esModule", {
4
4
  value: true
5
5
  });
6
- exports["default"] = void 0;
6
+ exports.default = void 0;
7
7
 
8
8
  var _mobxStateTree = require("mobx-state-tree");
9
9
 
@@ -39,4 +39,4 @@ var _default = (0, _configuration.ConfigurationSchema)('Gff3TabixAdapter', {
39
39
  explicitlyTyped: true
40
40
  });
41
41
 
42
- exports["default"] = _default;
42
+ exports.default = _default;
package/dist/Gff3TabixAdapter/index.js CHANGED
@@ -8,7 +8,7 @@ Object.defineProperty(exports, "__esModule", {
8
8
  Object.defineProperty(exports, "configSchema", {
9
9
  enumerable: true,
10
10
  get: function get() {
11
- return _configSchema["default"];
11
+ return _configSchema.default;
12
12
  }
13
13
  });
14
14
 
package/dist/index.js CHANGED
@@ -7,7 +7,7 @@ var _typeof = require("@babel/runtime/helpers/typeof");
7
7
  Object.defineProperty(exports, "__esModule", {
8
8
  value: true
9
9
  });
10
- exports["default"] = void 0;
10
+ exports.default = void 0;
11
11
 
12
12
  var _classCallCheck2 = _interopRequireDefault(require("@babel/runtime/helpers/classCallCheck"));
13
13
 
@@ -35,43 +35,43 @@ var _Gff3Adapter = require("./Gff3Adapter");
35
35
 
36
36
  function _getRequireWildcardCache(nodeInterop) { if (typeof WeakMap !== "function") return null; var cacheBabelInterop = new WeakMap(); var cacheNodeInterop = new WeakMap(); return (_getRequireWildcardCache = function _getRequireWildcardCache(nodeInterop) { return nodeInterop ? cacheNodeInterop : cacheBabelInterop; })(nodeInterop); }
37
37
 
38
- function _interopRequireWildcard(obj, nodeInterop) { if (!nodeInterop && obj && obj.__esModule) { return obj; } if (obj === null || _typeof(obj) !== "object" && typeof obj !== "function") { return { "default": obj }; } var cache = _getRequireWildcardCache(nodeInterop); if (cache && cache.has(obj)) { return cache.get(obj); } var newObj = {}; var hasPropertyDescriptor = Object.defineProperty && Object.getOwnPropertyDescriptor; for (var key in obj) { if (key !== "default" && Object.prototype.hasOwnProperty.call(obj, key)) { var desc = hasPropertyDescriptor ? Object.getOwnPropertyDescriptor(obj, key) : null; if (desc && (desc.get || desc.set)) { Object.defineProperty(newObj, key, desc); } else { newObj[key] = obj[key]; } } } newObj["default"] = obj; if (cache) { cache.set(obj, newObj); } return newObj; }
38
+ function _interopRequireWildcard(obj, nodeInterop) { if (!nodeInterop && obj && obj.__esModule) { return obj; } if (obj === null || _typeof(obj) !== "object" && typeof obj !== "function") { return { default: obj }; } var cache = _getRequireWildcardCache(nodeInterop); if (cache && cache.has(obj)) { return cache.get(obj); } var newObj = {}; var hasPropertyDescriptor = Object.defineProperty && Object.getOwnPropertyDescriptor; for (var key in obj) { if (key !== "default" && Object.prototype.hasOwnProperty.call(obj, key)) { var desc = hasPropertyDescriptor ? Object.getOwnPropertyDescriptor(obj, key) : null; if (desc && (desc.get || desc.set)) { Object.defineProperty(newObj, key, desc); } else { newObj[key] = obj[key]; } } } newObj.default = obj; if (cache) { cache.set(obj, newObj); } return newObj; }
39
39
 
40
- function _createSuper(Derived) { var hasNativeReflectConstruct = _isNativeReflectConstruct(); return function _createSuperInternal() { var Super = (0, _getPrototypeOf2["default"])(Derived), result; if (hasNativeReflectConstruct) { var NewTarget = (0, _getPrototypeOf2["default"])(this).constructor; result = Reflect.construct(Super, arguments, NewTarget); } else { result = Super.apply(this, arguments); } return (0, _possibleConstructorReturn2["default"])(this, result); }; }
40
+ function _createSuper(Derived) { var hasNativeReflectConstruct = _isNativeReflectConstruct(); return function _createSuperInternal() { var Super = (0, _getPrototypeOf2.default)(Derived), result; if (hasNativeReflectConstruct) { var NewTarget = (0, _getPrototypeOf2.default)(this).constructor; result = Reflect.construct(Super, arguments, NewTarget); } else { result = Super.apply(this, arguments); } return (0, _possibleConstructorReturn2.default)(this, result); }; }
41
41
 
42
42
  function _isNativeReflectConstruct() { if (typeof Reflect === "undefined" || !Reflect.construct) return false; if (Reflect.construct.sham) return false; if (typeof Proxy === "function") return true; try { Boolean.prototype.valueOf.call(Reflect.construct(Boolean, [], function () {})); return true; } catch (e) { return false; } }
43
43
 
44
44
  var _default = /*#__PURE__*/function (_Plugin) {
45
- (0, _inherits2["default"])(_default, _Plugin);
45
+ (0, _inherits2.default)(_default, _Plugin);
46
46
 
47
47
  var _super = _createSuper(_default);
48
48
 
49
49
  function _default() {
50
50
  var _this;
51
51
 
52
- (0, _classCallCheck2["default"])(this, _default);
52
+ (0, _classCallCheck2.default)(this, _default);
53
53
 
54
54
  for (var _len = arguments.length, args = new Array(_len), _key = 0; _key < _len; _key++) {
55
55
  args[_key] = arguments[_key];
56
56
  }
57
57
 
58
58
  _this = _super.call.apply(_super, [this].concat(args));
59
- (0, _defineProperty2["default"])((0, _assertThisInitialized2["default"])(_this), "name", 'GFF3Plugin');
59
+ (0, _defineProperty2.default)((0, _assertThisInitialized2.default)(_this), "name", 'GFF3Plugin');
60
60
  return _this;
61
61
  }
62
62
 
63
- (0, _createClass2["default"])(_default, [{
63
+ (0, _createClass2.default)(_default, [{
64
64
  key: "install",
65
65
  value: function install(pluginManager) {
66
66
  pluginManager.addAdapterType(function () {
67
- return new _AdapterType["default"]({
67
+ return new _AdapterType.default({
68
68
  name: 'Gff3TabixAdapter',
69
69
  configSchema: _Gff3TabixAdapter.configSchema,
70
70
  getAdapterClass: function getAdapterClass() {
71
71
  return Promise.resolve().then(function () {
72
72
  return _interopRequireWildcard(require('./Gff3TabixAdapter/Gff3TabixAdapter'));
73
73
  }).then(function (r) {
74
- return r["default"];
74
+ return r.default;
75
75
  });
76
76
  }
77
77
  });
@@ -99,14 +99,14 @@ var _default = /*#__PURE__*/function (_Plugin) {
99
99
  };
100
100
  });
101
101
  pluginManager.addAdapterType(function () {
102
- return new _AdapterType["default"]({
102
+ return new _AdapterType.default({
103
103
  name: 'Gff3Adapter',
104
104
  configSchema: _Gff3Adapter.configSchema,
105
105
  getAdapterClass: function getAdapterClass() {
106
106
  return Promise.resolve().then(function () {
107
107
  return _interopRequireWildcard(require('./Gff3Adapter/Gff3Adapter'));
108
108
  }).then(function (r) {
109
- return r["default"];
109
+ return r.default;
110
110
  });
111
111
  }
112
112
  });
@@ -133,6 +133,6 @@ var _default = /*#__PURE__*/function (_Plugin) {
133
133
  }
134
134
  }]);
135
135
  return _default;
136
- }(_Plugin2["default"]);
136
+ }(_Plugin2.default);
137
137
 
138
- exports["default"] = _default;
138
+ exports.default = _default;
package/package.json CHANGED
@@ -1,6 +1,6 @@
1
1
  {
2
2
  "name": "@jbrowse/plugin-gff3",
3
- "version": "1.7.1",
3
+ "version": "1.7.5",
4
4
  "description": "JBrowse 2 gff3.",
5
5
  "keywords": [
6
6
  "jbrowse",
@@ -33,11 +33,11 @@
33
33
  "useSrc": "node ../../scripts/useSrc.js"
34
34
  },
35
35
  "dependencies": {
36
+ "@babel/runtime": "^7.17.9",
36
37
  "@flatten-js/interval-tree": "^1.0.15",
37
38
  "@gmod/bgzf-filehandle": "^1.4.3",
38
39
  "@gmod/gff": "^1.2.0",
39
- "@gmod/tabix": "^1.5.2",
40
- "generic-filehandle": "^2.2.2"
40
+ "@gmod/tabix": "^1.5.2"
41
41
  },
42
42
  "peerDependencies": {
43
43
  "@jbrowse/core": "^1.0.0",
@@ -52,5 +52,5 @@
52
52
  "publishConfig": {
53
53
  "access": "public"
54
54
  },
55
- "gitHead": "6da232090c90f22ac96fd464c33082c89b8da14b"
55
+ "gitHead": "2c3a1f0c95a47b24eba790eaeb49274caf297aeb"
56
56
  }