@jbrowse/plugin-gccontent 3.7.0 → 4.0.1

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Files changed (44) hide show
  1. package/esm/GCContentAdapter/GCContentAdapter.d.ts +3 -2
  2. package/esm/GCContentAdapter/GCContentAdapter.js +103 -103
  3. package/esm/GCContentAdapter/configSchema.d.ts +2 -2
  4. package/esm/GCContentAdapter/index.js +2 -2
  5. package/esm/GCContentTrack/configSchema.d.ts +16 -11
  6. package/esm/GCContentTrack/index.js +17 -2
  7. package/esm/LinearGCContentDisplay/components/EditGCContentParams.js +1 -1
  8. package/esm/LinearGCContentDisplay/config1.d.ts +2 -2
  9. package/esm/LinearGCContentDisplay/config2.d.ts +2 -2
  10. package/esm/LinearGCContentDisplay/index.js +10 -7
  11. package/esm/LinearGCContentDisplay/shared.d.ts +1057 -106
  12. package/esm/LinearGCContentDisplay/shared.js +4 -6
  13. package/esm/LinearGCContentDisplay/stateModel1.d.ts +1024 -107
  14. package/esm/LinearGCContentDisplay/stateModel1.js +2 -2
  15. package/esm/LinearGCContentDisplay/stateModel2.d.ts +1024 -107
  16. package/esm/LinearGCContentDisplay/stateModel2.js +2 -2
  17. package/esm/index.js +4 -7
  18. package/package.json +27 -32
  19. package/dist/GCContentAdapter/GCContentAdapter.d.ts +0 -10
  20. package/dist/GCContentAdapter/GCContentAdapter.js +0 -132
  21. package/dist/GCContentAdapter/configSchema.d.ts +0 -16
  22. package/dist/GCContentAdapter/configSchema.js +0 -21
  23. package/dist/GCContentAdapter/index.d.ts +0 -2
  24. package/dist/GCContentAdapter/index.js +0 -52
  25. package/dist/GCContentTrack/configSchema.d.ts +0 -80
  26. package/dist/GCContentTrack/configSchema.js +0 -9
  27. package/dist/GCContentTrack/index.d.ts +0 -2
  28. package/dist/GCContentTrack/index.js +0 -20
  29. package/dist/LinearGCContentDisplay/components/EditGCContentParams.d.ts +0 -12
  30. package/dist/LinearGCContentDisplay/components/EditGCContentParams.js +0 -25
  31. package/dist/LinearGCContentDisplay/config1.d.ts +0 -11
  32. package/dist/LinearGCContentDisplay/config1.js +0 -20
  33. package/dist/LinearGCContentDisplay/config2.d.ts +0 -11
  34. package/dist/LinearGCContentDisplay/config2.js +0 -20
  35. package/dist/LinearGCContentDisplay/index.d.ts +0 -2
  36. package/dist/LinearGCContentDisplay/index.js +0 -40
  37. package/dist/LinearGCContentDisplay/shared.d.ts +0 -442
  38. package/dist/LinearGCContentDisplay/shared.js +0 -96
  39. package/dist/LinearGCContentDisplay/stateModel1.d.ts +0 -444
  40. package/dist/LinearGCContentDisplay/stateModel1.js +0 -13
  41. package/dist/LinearGCContentDisplay/stateModel2.d.ts +0 -444
  42. package/dist/LinearGCContentDisplay/stateModel2.js +0 -13
  43. package/dist/index.d.ts +0 -6
  44. package/dist/index.js +0 -21
package/esm/LinearGCContentDisplay/stateModel2.d.ts CHANGED
@@ -1,28 +1,28 @@
1
1
  import type PluginManager from '@jbrowse/core/PluginManager';
2
2
  import type { AnyConfigurationSchemaType } from '@jbrowse/core/configuration';
3
- export default function stateModelF(pluginManager: PluginManager, configSchema: AnyConfigurationSchemaType): import("mobx-state-tree").IModelType<{
4
- id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
5
- type: import("mobx-state-tree").ISimpleType<string>;
6
- rpcDriverName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
7
- } & {
8
- heightPreConfig: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
9
- } & {
10
- userBpPerPxLimit: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
11
- userByteSizeLimit: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
12
- } & {
13
- blockState: import("mobx-state-tree").IMapType<import("mobx-state-tree").IModelType<{
14
- key: import("mobx-state-tree").ISimpleType<string>;
15
- region: import("mobx-state-tree").IType<import("@jbrowse/core/util").Region, import("@jbrowse/core/util").Region, import("@jbrowse/core/util").Region>;
16
- reloadFlag: import("mobx-state-tree").IType<number | undefined, number, number>;
17
- isLeftEndOfDisplayedRegion: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
18
- isRightEndOfDisplayedRegion: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
3
+ export default function stateModelF(pluginManager: PluginManager, configSchema: AnyConfigurationSchemaType): import("@jbrowse/mobx-state-tree").IModelType<{
4
+ id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
5
+ type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
6
+ rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
7
+ } & {
8
+ heightPreConfig: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<number>>;
9
+ } & {
10
+ userBpPerPxLimit: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<number>>;
11
+ userByteSizeLimit: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<number>>;
12
+ } & {
13
+ blockState: import("@jbrowse/mobx-state-tree").IMapType<import("@jbrowse/mobx-state-tree").IModelType<{
14
+ key: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
15
+ region: import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/core/util").Region, import("@jbrowse/core/util").Region, import("@jbrowse/core/util").Region>;
16
+ reloadFlag: import("@jbrowse/mobx-state-tree").IType<number | undefined, number, number>;
17
+ isLeftEndOfDisplayedRegion: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
18
+ isRightEndOfDisplayedRegion: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
19
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  }, {
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- stopToken: string | undefined;
20
+ stopToken: import("@jbrowse/core/util").StopToken | undefined;
21
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  filled: boolean;
22
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  reactElement: React.ReactElement | undefined;
23
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  features: Map<string, import("@jbrowse/core/util").Feature> | undefined;
24
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  layout: any;
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- status: string;
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+ blockStatusMessage: string;
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  error: unknown;
27
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  message: string | undefined;
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  maxHeightReached: boolean;
@@ -30,25 +30,32 @@ export default function stateModelF(pluginManager: PluginManager, configSchema:
30
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  model: {
31
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  error?: unknown;
32
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  reload: () => void;
33
- message: React.ReactNode;
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- filled?: boolean;
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- status?: string;
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+ message?: React.ReactNode;
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+ statusMessage?: string;
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  reactElement?: React.ReactElement;
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+ isRenderingPending?: boolean;
37
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  };
38
- }) => import("react/jsx-runtime").JSX.Element | undefined;
38
+ }) => import("react/jsx-runtime").JSX.Element;
39
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  renderProps: any;
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+ renderArgs: Record<string, unknown> | undefined;
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+ isRenderingPending: boolean;
42
+ cachedDisplay: import("@jbrowse/core/util").AbstractDisplayModel | undefined;
40
43
  } & {
41
44
  doReload(): void;
42
- afterAttach(): void;
43
- setStatus(message: string): void;
44
- setLoading(newStopToken: string): void;
45
+ setStatusMessage(message: string): void;
46
+ setLoading(newStopToken: import("@jbrowse/core/util").StopToken): void;
45
47
  setMessage(messageText: string): void;
46
- setRendered(props: import("@jbrowse/plugin-linear-genome-view/src/BaseLinearDisplay/models/serverSideRenderedBlock").RenderedProps | undefined): void;
48
+ setRendered(props: import("@jbrowse/plugin-linear-genome-view/src/BaseLinearDisplay/models/serverSideRenderedBlock.ts").RenderedProps | undefined): void;
47
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  setError(error: unknown): void;
48
50
  reload(): void;
51
+ setCachedDisplay(display: import("@jbrowse/core/util").AbstractDisplayModel): void;
49
52
  beforeDestroy(): void;
50
- }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
51
- configuration: import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
53
+ } & {
54
+ readonly statusMessage: any;
55
+ } & {
56
+ afterAttach(): void;
57
+ }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
58
+ configuration: import("node_modules/@jbrowse/core/src/configuration/configurationSchema.ts").ConfigurationSchemaType<{
52
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  maxFeatureScreenDensity: {
53
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  type: string;
54
61
  description: string;
@@ -75,56 +82,58 @@ export default function stateModelF(pluginManager: PluginManager, configSchema:
75
82
  description: string;
76
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  defaultValue: never[];
77
84
  };
78
- }, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, "displayId">>;
79
- } & {
80
- selectedRendering: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
81
- resolution: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<number>, [undefined]>;
82
- fill: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<boolean>>;
83
- minSize: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
84
- color: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
85
- posColor: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
86
- negColor: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
87
- summaryScoreMode: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
88
- rendererTypeNameState: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
89
- scale: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
90
- autoscale: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
91
- displayCrossHatches: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<boolean>>;
92
- constraints: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").IModelType<{
93
- max: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
94
- min: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
95
- }, {}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>, [undefined]>;
85
+ }, import("node_modules/@jbrowse/core/src/configuration/configurationSchema.ts").ConfigurationSchemaOptions<undefined, "displayId">>;
86
+ showLegend: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>>;
87
+ showTooltips: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>>;
88
+ } & {
89
+ selectedRendering: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
90
+ resolution: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<number>, [undefined]>;
91
+ fill: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>>;
92
+ minSize: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<number>>;
93
+ color: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
94
+ posColor: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
95
+ negColor: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
96
+ summaryScoreMode: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
97
+ rendererTypeNameState: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
98
+ scale: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
99
+ autoscale: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
100
+ displayCrossHatches: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>>;
101
+ constraints: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").IModelType<{
102
+ max: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<number>>;
103
+ min: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<number>>;
104
+ }, {}, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>, [undefined]>;
96
105
  configuration: AnyConfigurationSchemaType;
97
106
  } & {
98
- type: import("mobx-state-tree").ISimpleType<"LinearWiggleDisplay">;
99
- invertedSetting: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<boolean>>;
107
+ type: import("@jbrowse/mobx-state-tree").ISimpleType<"LinearWiggleDisplay">;
108
+ invertedSetting: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>>;
100
109
  } & {
101
- windowSize: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
102
- windowDelta: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
110
+ windowSize: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<number>>;
111
+ windowDelta: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<number>>;
103
112
  } & {
104
- type: import("mobx-state-tree").ISimpleType<"LinearGCContentTrackDisplay">;
113
+ type: import("@jbrowse/mobx-state-tree").ISimpleType<"LinearGCContentTrackDisplay">;
105
114
  }, {
106
115
  rendererTypeName: string;
107
116
  error: unknown;
108
- message: string | undefined;
117
+ statusMessage: string | undefined;
109
118
  } & {
110
119
  readonly RenderingComponent: React.FC<{
111
120
  model: {
112
121
  id: string;
113
122
  type: string;
114
123
  rpcDriverName: string | undefined;
115
- } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
124
+ } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
116
125
  rendererTypeName: string;
117
126
  error: unknown;
118
- message: string | undefined;
119
- } & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
120
- id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
121
- type: import("mobx-state-tree").ISimpleType<string>;
122
- rpcDriverName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
127
+ statusMessage: string | undefined;
128
+ } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
129
+ id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
130
+ type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
131
+ rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
123
132
  }, {
124
133
  rendererTypeName: string;
125
134
  error: unknown;
126
- message: string | undefined;
127
- }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
135
+ statusMessage: string | undefined;
136
+ }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
128
137
  onHorizontalScroll?: () => void;
129
138
  blockState?: Record<string, any>;
130
139
  }>;
@@ -133,30 +142,142 @@ export default function stateModelF(pluginManager: PluginManager, configSchema:
133
142
  id: string;
134
143
  type: string;
135
144
  rpcDriverName: string | undefined;
136
- } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
145
+ } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
137
146
  rendererTypeName: string;
138
147
  error: unknown;
139
- message: string | undefined;
140
- } & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
141
- id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
142
- type: import("mobx-state-tree").ISimpleType<string>;
143
- rpcDriverName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
148
+ statusMessage: string | undefined;
149
+ } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
150
+ id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
151
+ type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
152
+ rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
144
153
  }, {
145
154
  rendererTypeName: string;
146
155
  error: unknown;
147
- message: string | undefined;
148
- }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
156
+ statusMessage: string | undefined;
157
+ }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
149
158
  }> | null;
150
159
  readonly adapterConfig: any;
151
- readonly parentTrack: any;
160
+ readonly parentTrack: import("@jbrowse/core/util").AbstractTrackModel;
161
+ readonly parentDisplay: any;
162
+ readonly effectiveRpcDriverName: any;
163
+ } & {
152
164
  renderProps(): any;
165
+ renderingProps(): {
166
+ displayModel: {
167
+ id: string;
168
+ type: string;
169
+ rpcDriverName: string | undefined;
170
+ } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
171
+ rendererTypeName: string;
172
+ error: unknown;
173
+ statusMessage: string | undefined;
174
+ } & {
175
+ readonly RenderingComponent: React.FC<{
176
+ model: {
177
+ id: string;
178
+ type: string;
179
+ rpcDriverName: string | undefined;
180
+ } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
181
+ rendererTypeName: string;
182
+ error: unknown;
183
+ statusMessage: string | undefined;
184
+ } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
185
+ id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
186
+ type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
187
+ rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
188
+ }, {
189
+ rendererTypeName: string;
190
+ error: unknown;
191
+ statusMessage: string | undefined;
192
+ }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
193
+ onHorizontalScroll?: () => void;
194
+ blockState?: Record<string, any>;
195
+ }>;
196
+ readonly DisplayBlurb: React.FC<{
197
+ model: {
198
+ id: string;
199
+ type: string;
200
+ rpcDriverName: string | undefined;
201
+ } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
202
+ rendererTypeName: string;
203
+ error: unknown;
204
+ statusMessage: string | undefined;
205
+ } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
206
+ id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
207
+ type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
208
+ rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
209
+ }, {
210
+ rendererTypeName: string;
211
+ error: unknown;
212
+ statusMessage: string | undefined;
213
+ }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
214
+ }> | null;
215
+ readonly adapterConfig: any;
216
+ readonly parentTrack: import("@jbrowse/core/util").AbstractTrackModel;
217
+ readonly parentDisplay: any;
218
+ readonly effectiveRpcDriverName: any;
219
+ } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
220
+ id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
221
+ type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
222
+ rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
223
+ }, {
224
+ rendererTypeName: string;
225
+ error: unknown;
226
+ statusMessage: string | undefined;
227
+ } & {
228
+ readonly RenderingComponent: React.FC<{
229
+ model: {
230
+ id: string;
231
+ type: string;
232
+ rpcDriverName: string | undefined;
233
+ } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
234
+ rendererTypeName: string;
235
+ error: unknown;
236
+ statusMessage: string | undefined;
237
+ } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
238
+ id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
239
+ type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
240
+ rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
241
+ }, {
242
+ rendererTypeName: string;
243
+ error: unknown;
244
+ statusMessage: string | undefined;
245
+ }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
246
+ onHorizontalScroll?: () => void;
247
+ blockState?: Record<string, any>;
248
+ }>;
249
+ readonly DisplayBlurb: React.FC<{
250
+ model: {
251
+ id: string;
252
+ type: string;
253
+ rpcDriverName: string | undefined;
254
+ } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
255
+ rendererTypeName: string;
256
+ error: unknown;
257
+ statusMessage: string | undefined;
258
+ } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
259
+ id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
260
+ type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
261
+ rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
262
+ }, {
263
+ rendererTypeName: string;
264
+ error: unknown;
265
+ statusMessage: string | undefined;
266
+ }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
267
+ }> | null;
268
+ readonly adapterConfig: any;
269
+ readonly parentTrack: import("@jbrowse/core/util").AbstractTrackModel;
270
+ readonly parentDisplay: any;
271
+ readonly effectiveRpcDriverName: any;
272
+ }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
273
+ };
153
274
  readonly rendererType: import("@jbrowse/core/pluggableElementTypes").RendererType;
154
275
  readonly DisplayMessageComponent: undefined | React.FC<any>;
155
276
  trackMenuItems(): import("@jbrowse/core/ui").MenuItem[];
156
277
  readonly viewMenuActions: import("@jbrowse/core/ui").MenuItem[];
157
278
  regionCannotBeRendered(): null;
158
279
  } & {
159
- setMessage(arg?: string): void;
280
+ setStatusMessage(arg?: string): void;
160
281
  setError(error?: unknown): void;
161
282
  setRpcDriverName(rpcDriverName: string): void;
162
283
  reload(): void;
@@ -191,12 +312,13 @@ export default function stateModelF(pluginManager: PluginManager, configSchema:
191
312
  readonly regionTooLarge: boolean;
192
313
  readonly regionTooLargeReason: string;
193
314
  } & {
194
- readonly statsReadyAndRegionNotTooLarge: boolean;
315
+ readonly featureDensityStatsReadyAndRegionNotTooLarge: boolean;
195
316
  regionCannotBeRenderedText(_region: import("@jbrowse/core/util").Region): "" | "Force load to see features";
196
317
  regionCannotBeRendered(_region: import("@jbrowse/core/util").Region): import("react/jsx-runtime").JSX.Element | null;
197
318
  } & {
198
319
  mouseoverExtraInformation: string | undefined;
199
320
  featureIdUnderMouse: undefined | string;
321
+ subfeatureIdUnderMouse: undefined | string;
200
322
  contextMenuFeature: undefined | import("@jbrowse/core/util").Feature;
201
323
  } & {
202
324
  readonly DisplayMessageComponent: undefined | React.FC<any>;
@@ -205,27 +327,23 @@ export default function stateModelF(pluginManager: PluginManager, configSchema:
205
327
  } & {
206
328
  readonly renderDelay: number;
207
329
  readonly TooltipComponent: import("@jbrowse/core/util").AnyReactComponentType;
330
+ legendItems(_theme?: import("@mui/material").Theme): import("@jbrowse/plugin-linear-genome-view").LegendItem[];
331
+ svgLegendWidth(theme?: import("@mui/material").Theme): number;
208
332
  readonly selectedFeatureId: string | undefined;
209
- copyInfoToClipboard(feature: import("@jbrowse/core/util").Feature): void;
333
+ readonly featureWidgetType: {
334
+ type: string;
335
+ id: string;
336
+ };
210
337
  } & {
338
+ readonly showTooltipsEnabled: boolean;
211
339
  readonly features: import("@jbrowse/core/util/compositeMap").default<string, import("@jbrowse/core/util").Feature>;
212
340
  readonly featureUnderMouse: import("@jbrowse/core/util").Feature | undefined;
213
- readonly layoutFeatures: import("@jbrowse/core/util/compositeMap").default<string, [number, number, number, number] | [number, number, number, number, {
214
- label?: string;
215
- description?: string;
216
- refName: string;
217
- }]>;
341
+ getFeatureById(featureId: string, parentFeatureId?: string): import("@jbrowse/core/util").Feature | undefined;
342
+ readonly layoutFeatures: import("@jbrowse/core/util/compositeMap").default<string, import("@jbrowse/plugin-linear-genome-view/src/BaseLinearDisplay/types.ts").LayoutRecord>;
218
343
  getFeatureOverlapping(blockKey: string, x: number, y: number): string | undefined;
219
- getFeatureByID(blockKey: string, id: string): ([number, number, number, number] | [number, number, number, number, {
220
- label?: string;
221
- description?: string;
222
- refName: string;
223
- }]) | undefined;
224
- searchFeatureByID(id: string): ([number, number, number, number] | [number, number, number, number, {
225
- label?: string;
226
- description?: string;
227
- refName: string;
228
- }]) | undefined;
344
+ getFeatureByID(blockKey: string, id: string): import("@jbrowse/plugin-linear-genome-view/src/BaseLinearDisplay/types.ts").LayoutRecord | undefined;
345
+ searchFeatureByID(id: string): import("@jbrowse/plugin-linear-genome-view/src/BaseLinearDisplay/types.ts").LayoutRecord | undefined;
346
+ readonly floatingLabelData: Map<string, import("@jbrowse/plugin-linear-genome-view/src/BaseLinearDisplay/components/util.ts").FeatureLabelData>;
229
347
  } & {
230
348
  addBlock(key: string, block: import("@jbrowse/core/util/blockTypes").BaseBlock): void;
231
349
  deleteBlock(key: string): void;
@@ -233,13 +351,746 @@ export default function stateModelF(pluginManager: PluginManager, configSchema:
233
351
  navToFeature(feature: import("@jbrowse/core/util").Feature): void;
234
352
  clearFeatureSelection(): void;
235
353
  setFeatureIdUnderMouse(feature?: string): void;
354
+ setSubfeatureIdUnderMouse(subfeatureId?: string): void;
236
355
  setContextMenuFeature(feature?: import("@jbrowse/core/util").Feature): void;
237
356
  setMouseoverExtraInformation(extra?: string): void;
357
+ setShowLegend(s: boolean): void;
358
+ setShowTooltips(arg: boolean): void;
238
359
  } & {
239
360
  reload(): Promise<void>;
361
+ } & {
362
+ selectFeatureById: (featureId: string, parentFeatureId?: string | undefined, topLevelFeatureId?: string | undefined) => Promise<void>;
363
+ setContextMenuFeatureById: (featureId: string, parentFeatureId?: string | undefined, topLevelFeatureId?: string | undefined) => Promise<void>;
240
364
  } & {
241
365
  trackMenuItems(): import("@jbrowse/core/ui").MenuItem[];
242
366
  contextMenuItems(): import("@jbrowse/core/ui").MenuItem[];
367
+ renderingProps(): {
368
+ displayModel: {
369
+ id: string;
370
+ type: string;
371
+ rpcDriverName: string | undefined;
372
+ heightPreConfig: number | undefined;
373
+ userBpPerPxLimit: number | undefined;
374
+ userByteSizeLimit: number | undefined;
375
+ blockState: import("@jbrowse/mobx-state-tree").IMSTMap<import("@jbrowse/mobx-state-tree").IModelType<{
376
+ key: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
377
+ region: import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/core/util").Region, import("@jbrowse/core/util").Region, import("@jbrowse/core/util").Region>;
378
+ reloadFlag: import("@jbrowse/mobx-state-tree").IType<number | undefined, number, number>;
379
+ isLeftEndOfDisplayedRegion: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
380
+ isRightEndOfDisplayedRegion: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
381
+ }, {
382
+ stopToken: import("@jbrowse/core/util").StopToken | undefined;
383
+ filled: boolean;
384
+ reactElement: React.ReactElement | undefined;
385
+ features: Map<string, import("@jbrowse/core/util").Feature> | undefined;
386
+ layout: any;
387
+ blockStatusMessage: string;
388
+ error: unknown;
389
+ message: string | undefined;
390
+ maxHeightReached: boolean;
391
+ ReactComponent: ({ model, }: {
392
+ model: {
393
+ error?: unknown;
394
+ reload: () => void;
395
+ message?: React.ReactNode;
396
+ statusMessage?: string;
397
+ reactElement?: React.ReactElement;
398
+ isRenderingPending?: boolean;
399
+ };
400
+ }) => import("react/jsx-runtime").JSX.Element;
401
+ renderProps: any;
402
+ renderArgs: Record<string, unknown> | undefined;
403
+ isRenderingPending: boolean;
404
+ cachedDisplay: import("@jbrowse/core/util").AbstractDisplayModel | undefined;
405
+ } & {
406
+ doReload(): void;
407
+ setStatusMessage(message: string): void;
408
+ setLoading(newStopToken: import("@jbrowse/core/util").StopToken): void;
409
+ setMessage(messageText: string): void;
410
+ setRendered(props: import("@jbrowse/plugin-linear-genome-view/src/BaseLinearDisplay/models/serverSideRenderedBlock.ts").RenderedProps | undefined): void;
411
+ setError(error: unknown): void;
412
+ reload(): void;
413
+ setCachedDisplay(display: import("@jbrowse/core/util").AbstractDisplayModel): void;
414
+ beforeDestroy(): void;
415
+ } & {
416
+ readonly statusMessage: any;
417
+ } & {
418
+ afterAttach(): void;
419
+ }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>> & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IMapType<import("@jbrowse/mobx-state-tree").IModelType<{
420
+ key: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
421
+ region: import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/core/util").Region, import("@jbrowse/core/util").Region, import("@jbrowse/core/util").Region>;
422
+ reloadFlag: import("@jbrowse/mobx-state-tree").IType<number | undefined, number, number>;
423
+ isLeftEndOfDisplayedRegion: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
424
+ isRightEndOfDisplayedRegion: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
425
+ }, {
426
+ stopToken: import("@jbrowse/core/util").StopToken | undefined;
427
+ filled: boolean;
428
+ reactElement: React.ReactElement | undefined;
429
+ features: Map<string, import("@jbrowse/core/util").Feature> | undefined;
430
+ layout: any;
431
+ blockStatusMessage: string;
432
+ error: unknown;
433
+ message: string | undefined;
434
+ maxHeightReached: boolean;
435
+ ReactComponent: ({ model, }: {
436
+ model: {
437
+ error?: unknown;
438
+ reload: () => void;
439
+ message?: React.ReactNode;
440
+ statusMessage?: string;
441
+ reactElement?: React.ReactElement;
442
+ isRenderingPending?: boolean;
443
+ };
444
+ }) => import("react/jsx-runtime").JSX.Element;
445
+ renderProps: any;
446
+ renderArgs: Record<string, unknown> | undefined;
447
+ isRenderingPending: boolean;
448
+ cachedDisplay: import("@jbrowse/core/util").AbstractDisplayModel | undefined;
449
+ } & {
450
+ doReload(): void;
451
+ setStatusMessage(message: string): void;
452
+ setLoading(newStopToken: import("@jbrowse/core/util").StopToken): void;
453
+ setMessage(messageText: string): void;
454
+ setRendered(props: import("@jbrowse/plugin-linear-genome-view/src/BaseLinearDisplay/models/serverSideRenderedBlock.ts").RenderedProps | undefined): void;
455
+ setError(error: unknown): void;
456
+ reload(): void;
457
+ setCachedDisplay(display: import("@jbrowse/core/util").AbstractDisplayModel): void;
458
+ beforeDestroy(): void;
459
+ } & {
460
+ readonly statusMessage: any;
461
+ } & {
462
+ afterAttach(): void;
463
+ }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>>;
464
+ configuration: {
465
+ [x: string]: any;
466
+ } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
467
+ setSubschema(slotName: string, data: Record<string, unknown>): Record<string, unknown> | ({
468
+ [x: string]: any;
469
+ } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
470
+ setSubschema(slotName: string, data: Record<string, unknown>): Record<string, unknown> | ({
471
+ [x: string]: any;
472
+ } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & any & import("@jbrowse/mobx-state-tree").IStateTreeNode<AnyConfigurationSchemaType>);
473
+ } & import("@jbrowse/mobx-state-tree").IStateTreeNode<AnyConfigurationSchemaType>);
474
+ } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("node_modules/@jbrowse/core/src/configuration/configurationSchema.ts").ConfigurationSchemaType<{
475
+ maxFeatureScreenDensity: {
476
+ type: string;
477
+ description: string;
478
+ defaultValue: number;
479
+ };
480
+ fetchSizeLimit: {
481
+ type: string;
482
+ defaultValue: number;
483
+ description: string;
484
+ };
485
+ height: {
486
+ type: string;
487
+ defaultValue: number;
488
+ description: string;
489
+ };
490
+ mouseover: {
491
+ type: string;
492
+ description: string;
493
+ defaultValue: string;
494
+ contextVariable: string[];
495
+ };
496
+ jexlFilters: {
497
+ type: string;
498
+ description: string;
499
+ defaultValue: never[];
500
+ };
501
+ }, import("node_modules/@jbrowse/core/src/configuration/configurationSchema.ts").ConfigurationSchemaOptions<undefined, "displayId">>>;
502
+ showLegend: boolean | undefined;
503
+ showTooltips: boolean | undefined;
504
+ } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
505
+ rendererTypeName: string;
506
+ error: unknown;
507
+ statusMessage: string | undefined;
508
+ } & {
509
+ readonly RenderingComponent: React.FC<{
510
+ model: {
511
+ id: string;
512
+ type: string;
513
+ rpcDriverName: string | undefined;
514
+ } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
515
+ rendererTypeName: string;
516
+ error: unknown;
517
+ statusMessage: string | undefined;
518
+ } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
519
+ id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
520
+ type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
521
+ rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
522
+ }, {
523
+ rendererTypeName: string;
524
+ error: unknown;
525
+ statusMessage: string | undefined;
526
+ }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
527
+ onHorizontalScroll?: () => void;
528
+ blockState?: Record<string, any>;
529
+ }>;
530
+ readonly DisplayBlurb: React.FC<{
531
+ model: {
532
+ id: string;
533
+ type: string;
534
+ rpcDriverName: string | undefined;
535
+ } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
536
+ rendererTypeName: string;
537
+ error: unknown;
538
+ statusMessage: string | undefined;
539
+ } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
540
+ id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
541
+ type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
542
+ rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
543
+ }, {
544
+ rendererTypeName: string;
545
+ error: unknown;
546
+ statusMessage: string | undefined;
547
+ }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
548
+ }> | null;
549
+ readonly adapterConfig: any;
550
+ readonly parentTrack: import("@jbrowse/core/util").AbstractTrackModel;
551
+ readonly parentDisplay: any;
552
+ readonly effectiveRpcDriverName: any;
553
+ } & {
554
+ renderProps(): any;
555
+ renderingProps(): {
556
+ displayModel: {
557
+ id: string;
558
+ type: string;
559
+ rpcDriverName: string | undefined;
560
+ } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
561
+ rendererTypeName: string;
562
+ error: unknown;
563
+ statusMessage: string | undefined;
564
+ } & {
565
+ readonly RenderingComponent: React.FC<{
566
+ model: {
567
+ id: string;
568
+ type: string;
569
+ rpcDriverName: string | undefined;
570
+ } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
571
+ rendererTypeName: string;
572
+ error: unknown;
573
+ statusMessage: string | undefined;
574
+ } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
575
+ id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
576
+ type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
577
+ rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
578
+ }, {
579
+ rendererTypeName: string;
580
+ error: unknown;
581
+ statusMessage: string | undefined;
582
+ }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
583
+ onHorizontalScroll?: () => void;
584
+ blockState?: Record<string, any>;
585
+ }>;
586
+ readonly DisplayBlurb: React.FC<{
587
+ model: {
588
+ id: string;
589
+ type: string;
590
+ rpcDriverName: string | undefined;
591
+ } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
592
+ rendererTypeName: string;
593
+ error: unknown;
594
+ statusMessage: string | undefined;
595
+ } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
596
+ id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
597
+ type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
598
+ rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
599
+ }, {
600
+ rendererTypeName: string;
601
+ error: unknown;
602
+ statusMessage: string | undefined;
603
+ }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
604
+ }> | null;
605
+ readonly adapterConfig: any;
606
+ readonly parentTrack: import("@jbrowse/core/util").AbstractTrackModel;
607
+ readonly parentDisplay: any;
608
+ readonly effectiveRpcDriverName: any;
609
+ } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
610
+ id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
611
+ type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
612
+ rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
613
+ }, {
614
+ rendererTypeName: string;
615
+ error: unknown;
616
+ statusMessage: string | undefined;
617
+ } & {
618
+ readonly RenderingComponent: React.FC<{
619
+ model: {
620
+ id: string;
621
+ type: string;
622
+ rpcDriverName: string | undefined;
623
+ } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
624
+ rendererTypeName: string;
625
+ error: unknown;
626
+ statusMessage: string | undefined;
627
+ } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
628
+ id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
629
+ type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
630
+ rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
631
+ }, {
632
+ rendererTypeName: string;
633
+ error: unknown;
634
+ statusMessage: string | undefined;
635
+ }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
636
+ onHorizontalScroll?: () => void;
637
+ blockState?: Record<string, any>;
638
+ }>;
639
+ readonly DisplayBlurb: React.FC<{
640
+ model: {
641
+ id: string;
642
+ type: string;
643
+ rpcDriverName: string | undefined;
644
+ } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
645
+ rendererTypeName: string;
646
+ error: unknown;
647
+ statusMessage: string | undefined;
648
+ } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
649
+ id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
650
+ type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
651
+ rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
652
+ }, {
653
+ rendererTypeName: string;
654
+ error: unknown;
655
+ statusMessage: string | undefined;
656
+ }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
657
+ }> | null;
658
+ readonly adapterConfig: any;
659
+ readonly parentTrack: import("@jbrowse/core/util").AbstractTrackModel;
660
+ readonly parentDisplay: any;
661
+ readonly effectiveRpcDriverName: any;
662
+ }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
663
+ };
664
+ readonly rendererType: import("@jbrowse/core/pluggableElementTypes").RendererType;
665
+ readonly DisplayMessageComponent: undefined | React.FC<any>;
666
+ trackMenuItems(): import("@jbrowse/core/ui").MenuItem[];
667
+ readonly viewMenuActions: import("@jbrowse/core/ui").MenuItem[];
668
+ regionCannotBeRendered(): null;
669
+ } & {
670
+ setStatusMessage(arg?: string): void;
671
+ setError(error?: unknown): void;
672
+ setRpcDriverName(rpcDriverName: string): void;
673
+ reload(): void;
674
+ } & {
675
+ scrollTop: number;
676
+ } & {
677
+ readonly height: number;
678
+ } & {
679
+ setScrollTop(scrollTop: number): void;
680
+ setHeight(displayHeight: number): number;
681
+ resizeHeight(distance: number): number;
682
+ } & {
683
+ featureDensityStatsP: undefined | Promise<import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats>;
684
+ featureDensityStats: undefined | import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats;
685
+ currStatsBpPerPx: number;
686
+ } & {
687
+ readonly currentBytesRequested: number;
688
+ readonly currentFeatureScreenDensity: number;
689
+ readonly maxFeatureScreenDensity: any;
690
+ readonly featureDensityStatsReady: boolean;
691
+ readonly maxAllowableBytes: number;
692
+ } & {
693
+ afterAttach(): void;
694
+ } & {
695
+ setCurrStatsBpPerPx(n: number): void;
696
+ setFeatureDensityStatsLimit(stats?: import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats): void;
697
+ getFeatureDensityStats(): Promise<import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats>;
698
+ setFeatureDensityStatsP(arg: any): void;
699
+ setFeatureDensityStats(featureDensityStats?: import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats): void;
700
+ clearFeatureDensityStats(): void;
701
+ } & {
702
+ readonly regionTooLarge: boolean;
703
+ readonly regionTooLargeReason: string;
704
+ } & {
705
+ readonly featureDensityStatsReadyAndRegionNotTooLarge: boolean;
706
+ regionCannotBeRenderedText(_region: import("@jbrowse/core/util").Region): "" | "Force load to see features";
707
+ regionCannotBeRendered(_region: import("@jbrowse/core/util").Region): import("react/jsx-runtime").JSX.Element | null;
708
+ } & {
709
+ mouseoverExtraInformation: string | undefined;
710
+ featureIdUnderMouse: undefined | string;
711
+ subfeatureIdUnderMouse: undefined | string;
712
+ contextMenuFeature: undefined | import("@jbrowse/core/util").Feature;
713
+ } & {
714
+ readonly DisplayMessageComponent: undefined | React.FC<any>;
715
+ readonly blockType: "staticBlocks" | "dynamicBlocks";
716
+ readonly blockDefinitions: import("@jbrowse/core/util/blockTypes").BlockSet;
717
+ } & {
718
+ readonly renderDelay: number;
719
+ readonly TooltipComponent: import("@jbrowse/core/util").AnyReactComponentType;
720
+ legendItems(_theme?: import("@mui/material").Theme): import("@jbrowse/plugin-linear-genome-view").LegendItem[];
721
+ svgLegendWidth(theme?: import("@mui/material").Theme): number;
722
+ readonly selectedFeatureId: string | undefined;
723
+ readonly featureWidgetType: {
724
+ type: string;
725
+ id: string;
726
+ };
727
+ } & {
728
+ readonly showTooltipsEnabled: boolean;
729
+ readonly features: import("@jbrowse/core/util/compositeMap").default<string, import("@jbrowse/core/util").Feature>;
730
+ readonly featureUnderMouse: import("@jbrowse/core/util").Feature | undefined;
731
+ getFeatureById(featureId: string, parentFeatureId?: string): import("@jbrowse/core/util").Feature | undefined;
732
+ readonly layoutFeatures: import("@jbrowse/core/util/compositeMap").default<string, import("@jbrowse/plugin-linear-genome-view/src/BaseLinearDisplay/types.ts").LayoutRecord>;
733
+ getFeatureOverlapping(blockKey: string, x: number, y: number): string | undefined;
734
+ getFeatureByID(blockKey: string, id: string): import("@jbrowse/plugin-linear-genome-view/src/BaseLinearDisplay/types.ts").LayoutRecord | undefined;
735
+ searchFeatureByID(id: string): import("@jbrowse/plugin-linear-genome-view/src/BaseLinearDisplay/types.ts").LayoutRecord | undefined;
736
+ readonly floatingLabelData: Map<string, import("@jbrowse/plugin-linear-genome-view/src/BaseLinearDisplay/components/util.ts").FeatureLabelData>;
737
+ } & {
738
+ addBlock(key: string, block: import("@jbrowse/core/util/blockTypes").BaseBlock): void;
739
+ deleteBlock(key: string): void;
740
+ selectFeature(feature: import("@jbrowse/core/util").Feature): void;
741
+ navToFeature(feature: import("@jbrowse/core/util").Feature): void;
742
+ clearFeatureSelection(): void;
743
+ setFeatureIdUnderMouse(feature?: string): void;
744
+ setSubfeatureIdUnderMouse(subfeatureId?: string): void;
745
+ setContextMenuFeature(feature?: import("@jbrowse/core/util").Feature): void;
746
+ setMouseoverExtraInformation(extra?: string): void;
747
+ setShowLegend(s: boolean): void;
748
+ setShowTooltips(arg: boolean): void;
749
+ } & {
750
+ reload(): Promise<void>;
751
+ } & {
752
+ selectFeatureById: (featureId: string, parentFeatureId?: string | undefined, topLevelFeatureId?: string | undefined) => Promise<void>;
753
+ setContextMenuFeatureById: (featureId: string, parentFeatureId?: string | undefined, topLevelFeatureId?: string | undefined) => Promise<void>;
754
+ } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
755
+ id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
756
+ type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
757
+ rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
758
+ } & {
759
+ heightPreConfig: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<number>>;
760
+ } & {
761
+ userBpPerPxLimit: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<number>>;
762
+ userByteSizeLimit: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<number>>;
763
+ } & {
764
+ blockState: import("@jbrowse/mobx-state-tree").IMapType<import("@jbrowse/mobx-state-tree").IModelType<{
765
+ key: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
766
+ region: import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/core/util").Region, import("@jbrowse/core/util").Region, import("@jbrowse/core/util").Region>;
767
+ reloadFlag: import("@jbrowse/mobx-state-tree").IType<number | undefined, number, number>;
768
+ isLeftEndOfDisplayedRegion: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
769
+ isRightEndOfDisplayedRegion: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
770
+ }, {
771
+ stopToken: import("@jbrowse/core/util").StopToken | undefined;
772
+ filled: boolean;
773
+ reactElement: React.ReactElement | undefined;
774
+ features: Map<string, import("@jbrowse/core/util").Feature> | undefined;
775
+ layout: any;
776
+ blockStatusMessage: string;
777
+ error: unknown;
778
+ message: string | undefined;
779
+ maxHeightReached: boolean;
780
+ ReactComponent: ({ model, }: {
781
+ model: {
782
+ error?: unknown;
783
+ reload: () => void;
784
+ message?: React.ReactNode;
785
+ statusMessage?: string;
786
+ reactElement?: React.ReactElement;
787
+ isRenderingPending?: boolean;
788
+ };
789
+ }) => import("react/jsx-runtime").JSX.Element;
790
+ renderProps: any;
791
+ renderArgs: Record<string, unknown> | undefined;
792
+ isRenderingPending: boolean;
793
+ cachedDisplay: import("@jbrowse/core/util").AbstractDisplayModel | undefined;
794
+ } & {
795
+ doReload(): void;
796
+ setStatusMessage(message: string): void;
797
+ setLoading(newStopToken: import("@jbrowse/core/util").StopToken): void;
798
+ setMessage(messageText: string): void;
799
+ setRendered(props: import("@jbrowse/plugin-linear-genome-view/src/BaseLinearDisplay/models/serverSideRenderedBlock.ts").RenderedProps | undefined): void;
800
+ setError(error: unknown): void;
801
+ reload(): void;
802
+ setCachedDisplay(display: import("@jbrowse/core/util").AbstractDisplayModel): void;
803
+ beforeDestroy(): void;
804
+ } & {
805
+ readonly statusMessage: any;
806
+ } & {
807
+ afterAttach(): void;
808
+ }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
809
+ configuration: import("node_modules/@jbrowse/core/src/configuration/configurationSchema.ts").ConfigurationSchemaType<{
810
+ maxFeatureScreenDensity: {
811
+ type: string;
812
+ description: string;
813
+ defaultValue: number;
814
+ };
815
+ fetchSizeLimit: {
816
+ type: string;
817
+ defaultValue: number;
818
+ description: string;
819
+ };
820
+ height: {
821
+ type: string;
822
+ defaultValue: number;
823
+ description: string;
824
+ };
825
+ mouseover: {
826
+ type: string;
827
+ description: string;
828
+ defaultValue: string;
829
+ contextVariable: string[];
830
+ };
831
+ jexlFilters: {
832
+ type: string;
833
+ description: string;
834
+ defaultValue: never[];
835
+ };
836
+ }, import("node_modules/@jbrowse/core/src/configuration/configurationSchema.ts").ConfigurationSchemaOptions<undefined, "displayId">>;
837
+ showLegend: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>>;
838
+ showTooltips: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>>;
839
+ }, {
840
+ rendererTypeName: string;
841
+ error: unknown;
842
+ statusMessage: string | undefined;
843
+ } & {
844
+ readonly RenderingComponent: React.FC<{
845
+ model: {
846
+ id: string;
847
+ type: string;
848
+ rpcDriverName: string | undefined;
849
+ } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
850
+ rendererTypeName: string;
851
+ error: unknown;
852
+ statusMessage: string | undefined;
853
+ } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
854
+ id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
855
+ type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
856
+ rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
857
+ }, {
858
+ rendererTypeName: string;
859
+ error: unknown;
860
+ statusMessage: string | undefined;
861
+ }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
862
+ onHorizontalScroll?: () => void;
863
+ blockState?: Record<string, any>;
864
+ }>;
865
+ readonly DisplayBlurb: React.FC<{
866
+ model: {
867
+ id: string;
868
+ type: string;
869
+ rpcDriverName: string | undefined;
870
+ } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
871
+ rendererTypeName: string;
872
+ error: unknown;
873
+ statusMessage: string | undefined;
874
+ } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
875
+ id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
876
+ type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
877
+ rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
878
+ }, {
879
+ rendererTypeName: string;
880
+ error: unknown;
881
+ statusMessage: string | undefined;
882
+ }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
883
+ }> | null;
884
+ readonly adapterConfig: any;
885
+ readonly parentTrack: import("@jbrowse/core/util").AbstractTrackModel;
886
+ readonly parentDisplay: any;
887
+ readonly effectiveRpcDriverName: any;
888
+ } & {
889
+ renderProps(): any;
890
+ renderingProps(): {
891
+ displayModel: {
892
+ id: string;
893
+ type: string;
894
+ rpcDriverName: string | undefined;
895
+ } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
896
+ rendererTypeName: string;
897
+ error: unknown;
898
+ statusMessage: string | undefined;
899
+ } & {
900
+ readonly RenderingComponent: React.FC<{
901
+ model: {
902
+ id: string;
903
+ type: string;
904
+ rpcDriverName: string | undefined;
905
+ } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
906
+ rendererTypeName: string;
907
+ error: unknown;
908
+ statusMessage: string | undefined;
909
+ } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
910
+ id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
911
+ type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
912
+ rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
913
+ }, {
914
+ rendererTypeName: string;
915
+ error: unknown;
916
+ statusMessage: string | undefined;
917
+ }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
918
+ onHorizontalScroll?: () => void;
919
+ blockState?: Record<string, any>;
920
+ }>;
921
+ readonly DisplayBlurb: React.FC<{
922
+ model: {
923
+ id: string;
924
+ type: string;
925
+ rpcDriverName: string | undefined;
926
+ } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
927
+ rendererTypeName: string;
928
+ error: unknown;
929
+ statusMessage: string | undefined;
930
+ } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
931
+ id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
932
+ type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
933
+ rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
934
+ }, {
935
+ rendererTypeName: string;
936
+ error: unknown;
937
+ statusMessage: string | undefined;
938
+ }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
939
+ }> | null;
940
+ readonly adapterConfig: any;
941
+ readonly parentTrack: import("@jbrowse/core/util").AbstractTrackModel;
942
+ readonly parentDisplay: any;
943
+ readonly effectiveRpcDriverName: any;
944
+ } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
945
+ id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
946
+ type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
947
+ rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
948
+ }, {
949
+ rendererTypeName: string;
950
+ error: unknown;
951
+ statusMessage: string | undefined;
952
+ } & {
953
+ readonly RenderingComponent: React.FC<{
954
+ model: {
955
+ id: string;
956
+ type: string;
957
+ rpcDriverName: string | undefined;
958
+ } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
959
+ rendererTypeName: string;
960
+ error: unknown;
961
+ statusMessage: string | undefined;
962
+ } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
963
+ id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
964
+ type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
965
+ rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
966
+ }, {
967
+ rendererTypeName: string;
968
+ error: unknown;
969
+ statusMessage: string | undefined;
970
+ }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
971
+ onHorizontalScroll?: () => void;
972
+ blockState?: Record<string, any>;
973
+ }>;
974
+ readonly DisplayBlurb: React.FC<{
975
+ model: {
976
+ id: string;
977
+ type: string;
978
+ rpcDriverName: string | undefined;
979
+ } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
980
+ rendererTypeName: string;
981
+ error: unknown;
982
+ statusMessage: string | undefined;
983
+ } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
984
+ id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
985
+ type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
986
+ rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
987
+ }, {
988
+ rendererTypeName: string;
989
+ error: unknown;
990
+ statusMessage: string | undefined;
991
+ }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
992
+ }> | null;
993
+ readonly adapterConfig: any;
994
+ readonly parentTrack: import("@jbrowse/core/util").AbstractTrackModel;
995
+ readonly parentDisplay: any;
996
+ readonly effectiveRpcDriverName: any;
997
+ }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
998
+ };
999
+ readonly rendererType: import("@jbrowse/core/pluggableElementTypes").RendererType;
1000
+ readonly DisplayMessageComponent: undefined | React.FC<any>;
1001
+ trackMenuItems(): import("@jbrowse/core/ui").MenuItem[];
1002
+ readonly viewMenuActions: import("@jbrowse/core/ui").MenuItem[];
1003
+ regionCannotBeRendered(): null;
1004
+ } & {
1005
+ setStatusMessage(arg?: string): void;
1006
+ setError(error?: unknown): void;
1007
+ setRpcDriverName(rpcDriverName: string): void;
1008
+ reload(): void;
1009
+ } & {
1010
+ scrollTop: number;
1011
+ } & {
1012
+ readonly height: number;
1013
+ } & {
1014
+ setScrollTop(scrollTop: number): void;
1015
+ setHeight(displayHeight: number): number;
1016
+ resizeHeight(distance: number): number;
1017
+ } & {
1018
+ featureDensityStatsP: undefined | Promise<import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats>;
1019
+ featureDensityStats: undefined | import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats;
1020
+ currStatsBpPerPx: number;
1021
+ } & {
1022
+ readonly currentBytesRequested: number;
1023
+ readonly currentFeatureScreenDensity: number;
1024
+ readonly maxFeatureScreenDensity: any;
1025
+ readonly featureDensityStatsReady: boolean;
1026
+ readonly maxAllowableBytes: number;
1027
+ } & {
1028
+ afterAttach(): void;
1029
+ } & {
1030
+ setCurrStatsBpPerPx(n: number): void;
1031
+ setFeatureDensityStatsLimit(stats?: import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats): void;
1032
+ getFeatureDensityStats(): Promise<import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats>;
1033
+ setFeatureDensityStatsP(arg: any): void;
1034
+ setFeatureDensityStats(featureDensityStats?: import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats): void;
1035
+ clearFeatureDensityStats(): void;
1036
+ } & {
1037
+ readonly regionTooLarge: boolean;
1038
+ readonly regionTooLargeReason: string;
1039
+ } & {
1040
+ readonly featureDensityStatsReadyAndRegionNotTooLarge: boolean;
1041
+ regionCannotBeRenderedText(_region: import("@jbrowse/core/util").Region): "" | "Force load to see features";
1042
+ regionCannotBeRendered(_region: import("@jbrowse/core/util").Region): import("react/jsx-runtime").JSX.Element | null;
1043
+ } & {
1044
+ mouseoverExtraInformation: string | undefined;
1045
+ featureIdUnderMouse: undefined | string;
1046
+ subfeatureIdUnderMouse: undefined | string;
1047
+ contextMenuFeature: undefined | import("@jbrowse/core/util").Feature;
1048
+ } & {
1049
+ readonly DisplayMessageComponent: undefined | React.FC<any>;
1050
+ readonly blockType: "staticBlocks" | "dynamicBlocks";
1051
+ readonly blockDefinitions: import("@jbrowse/core/util/blockTypes").BlockSet;
1052
+ } & {
1053
+ readonly renderDelay: number;
1054
+ readonly TooltipComponent: import("@jbrowse/core/util").AnyReactComponentType;
1055
+ legendItems(_theme?: import("@mui/material").Theme): import("@jbrowse/plugin-linear-genome-view").LegendItem[];
1056
+ svgLegendWidth(theme?: import("@mui/material").Theme): number;
1057
+ readonly selectedFeatureId: string | undefined;
1058
+ readonly featureWidgetType: {
1059
+ type: string;
1060
+ id: string;
1061
+ };
1062
+ } & {
1063
+ readonly showTooltipsEnabled: boolean;
1064
+ readonly features: import("@jbrowse/core/util/compositeMap").default<string, import("@jbrowse/core/util").Feature>;
1065
+ readonly featureUnderMouse: import("@jbrowse/core/util").Feature | undefined;
1066
+ getFeatureById(featureId: string, parentFeatureId?: string): import("@jbrowse/core/util").Feature | undefined;
1067
+ readonly layoutFeatures: import("@jbrowse/core/util/compositeMap").default<string, import("@jbrowse/plugin-linear-genome-view/src/BaseLinearDisplay/types.ts").LayoutRecord>;
1068
+ getFeatureOverlapping(blockKey: string, x: number, y: number): string | undefined;
1069
+ getFeatureByID(blockKey: string, id: string): import("@jbrowse/plugin-linear-genome-view/src/BaseLinearDisplay/types.ts").LayoutRecord | undefined;
1070
+ searchFeatureByID(id: string): import("@jbrowse/plugin-linear-genome-view/src/BaseLinearDisplay/types.ts").LayoutRecord | undefined;
1071
+ readonly floatingLabelData: Map<string, import("@jbrowse/plugin-linear-genome-view/src/BaseLinearDisplay/components/util.ts").FeatureLabelData>;
1072
+ } & {
1073
+ addBlock(key: string, block: import("@jbrowse/core/util/blockTypes").BaseBlock): void;
1074
+ deleteBlock(key: string): void;
1075
+ selectFeature(feature: import("@jbrowse/core/util").Feature): void;
1076
+ navToFeature(feature: import("@jbrowse/core/util").Feature): void;
1077
+ clearFeatureSelection(): void;
1078
+ setFeatureIdUnderMouse(feature?: string): void;
1079
+ setSubfeatureIdUnderMouse(subfeatureId?: string): void;
1080
+ setContextMenuFeature(feature?: import("@jbrowse/core/util").Feature): void;
1081
+ setMouseoverExtraInformation(extra?: string): void;
1082
+ setShowLegend(s: boolean): void;
1083
+ setShowTooltips(arg: boolean): void;
1084
+ } & {
1085
+ reload(): Promise<void>;
1086
+ } & {
1087
+ selectFeatureById: (featureId: string, parentFeatureId?: string | undefined, topLevelFeatureId?: string | undefined) => Promise<void>;
1088
+ setContextMenuFeatureById: (featureId: string, parentFeatureId?: string | undefined, topLevelFeatureId?: string | undefined) => Promise<void>;
1089
+ }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
1090
+ onMouseMove(_: unknown, featureId?: string): void;
1091
+ onMouseLeave(_: unknown): void;
1092
+ onContextMenu(_: unknown): void;
1093
+ };
243
1094
  renderProps(): any;
244
1095
  } & {
245
1096
  renderSvg(opts: import("@jbrowse/plugin-linear-genome-view").ExportSvgDisplayOptions): Promise<import("react/jsx-runtime").JSX.Element>;
@@ -250,18 +1101,19 @@ export default function stateModelF(pluginManager: PluginManager, configSchema:
250
1101
  currStatsBpPerPx: number;
251
1102
  scoreMin: number;
252
1103
  scoreMax: number;
1104
+ statsRegion?: string;
253
1105
  } | undefined;
254
- statsFetchInProgress: undefined | string;
1106
+ statsFetchInProgress: undefined | import("@jbrowse/core/util").StopToken;
255
1107
  } & {
256
1108
  updateQuantitativeStats(stats: {
257
1109
  currStatsBpPerPx: number;
258
1110
  scoreMin: number;
259
1111
  scoreMax: number;
260
- }): void;
1112
+ }, statsRegion?: string): void;
261
1113
  setColor(color?: string): void;
262
1114
  setPosColor(color?: string): void;
263
1115
  setNegColor(color?: string): void;
264
- setStatsLoading(arg?: string): void;
1116
+ setStatsLoading(arg?: import("@jbrowse/core/util").StopToken): void;
265
1117
  selectFeature(feature: import("@jbrowse/core/util").Feature): void;
266
1118
  setResolution(res: number): void;
267
1119
  setFill(fill: number): void;
@@ -283,17 +1135,7 @@ export default function stateModelF(pluginManager: PluginManager, configSchema:
283
1135
  readonly minScore: number;
284
1136
  } & {
285
1137
  readonly adapterCapabilities: string[];
286
- readonly rendererConfig: {
287
- [x: string]: any;
288
- } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
289
- setSubschema(slotName: string, data: Record<string, unknown>): Record<string, unknown> | ({
290
- [x: string]: any;
291
- } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
292
- setSubschema(slotName: string, data: Record<string, unknown>): Record<string, unknown> | ({
293
- [x: string]: any;
294
- } & import("mobx-state-tree/dist/internal").NonEmptyObject & any & import("mobx-state-tree").IStateTreeNode<AnyConfigurationSchemaType>);
295
- } & import("mobx-state-tree").IStateTreeNode<AnyConfigurationSchemaType>);
296
- } & import("mobx-state-tree").IStateTreeNode<AnyConfigurationSchemaType>;
1138
+ readonly rendererConfig: any;
297
1139
  readonly autoscaleType: string;
298
1140
  } & {
299
1141
  readonly domain: number[] | undefined;
@@ -306,6 +1148,7 @@ export default function stateModelF(pluginManager: PluginManager, configSchema:
306
1148
  currStatsBpPerPx: number;
307
1149
  scoreMin: number;
308
1150
  scoreMax: number;
1151
+ statsRegion?: string;
309
1152
  } | undefined;
310
1153
  autoscaleType: string;
311
1154
  scaleType: string;
@@ -357,10 +1200,10 @@ export default function stateModelF(pluginManager: PluginManager, configSchema:
357
1200
  } | undefined;
358
1201
  } & {
359
1202
  renderProps(): any;
360
- readonly fillSetting: 1 | 2 | 0;
1203
+ readonly fillSetting: 0 | 1 | 2;
361
1204
  readonly quantitativeStatsReady: boolean;
362
1205
  } & {
363
- trackMenuItems(): (import("@jbrowse/core/ui").MenuDivider | import("@jbrowse/core/ui").MenuSubHeader | import("@jbrowse/core/ui").NormalMenuItem | import("@jbrowse/core/ui").CheckboxMenuItem | import("@jbrowse/core/ui").RadioMenuItem | import("@jbrowse/core/ui").SubMenuItem | {
1206
+ wiggleBaseTrackMenuItems(): (import("@jbrowse/core/ui").MenuDivider | import("@jbrowse/core/ui").MenuSubHeader | import("@jbrowse/core/ui").NormalMenuItem | import("@jbrowse/core/ui").CheckboxMenuItem | import("@jbrowse/core/ui").RadioMenuItem | import("@jbrowse/core/ui").SubMenuItem | {
364
1207
  label: string;
365
1208
  icon: import("@mui/material/OverridableComponent").OverridableComponent<import("@mui/material").SvgIconTypeMap<{}, "svg">> & {
366
1209
  muiName: string;
@@ -386,16 +1229,79 @@ export default function stateModelF(pluginManager: PluginManager, configSchema:
386
1229
  onClick: () => void;
387
1230
  subMenu?: undefined;
388
1231
  })[];
1232
+ })[];
1233
+ wiggleOnlyTrackMenuItems(): ({
1234
+ label: string;
1235
+ type: string;
1236
+ checked: boolean;
1237
+ onClick: () => void;
1238
+ subMenu?: undefined;
1239
+ icon?: undefined;
1240
+ } | {
1241
+ label: string;
1242
+ subMenu: {
1243
+ label: string;
1244
+ type: string;
1245
+ checked: boolean;
1246
+ onClick: () => void;
1247
+ }[];
389
1248
  type?: undefined;
390
1249
  checked?: undefined;
391
1250
  onClick?: undefined;
1251
+ icon?: undefined;
1252
+ } | {
1253
+ label: string;
1254
+ icon: import("@mui/material/OverridableComponent").OverridableComponent<import("@mui/material").SvgIconTypeMap<{}, "svg">> & {
1255
+ muiName: string;
1256
+ };
1257
+ onClick: () => void;
1258
+ type?: undefined;
1259
+ checked?: undefined;
1260
+ subMenu?: undefined;
1261
+ } | {
1262
+ type: string;
1263
+ icon: import("@mui/material/OverridableComponent").OverridableComponent<import("@mui/material").SvgIconTypeMap<{}, "svg">> & {
1264
+ muiName: string;
1265
+ };
1266
+ label: string;
1267
+ checked: boolean;
1268
+ onClick: () => void;
1269
+ subMenu?: undefined;
1270
+ })[];
1271
+ } & {
1272
+ trackMenuItems(): (import("@jbrowse/core/ui").MenuDivider | import("@jbrowse/core/ui").MenuSubHeader | import("@jbrowse/core/ui").NormalMenuItem | import("@jbrowse/core/ui").CheckboxMenuItem | import("@jbrowse/core/ui").RadioMenuItem | import("@jbrowse/core/ui").SubMenuItem | {
1273
+ label: string;
1274
+ icon: import("@mui/material/OverridableComponent").OverridableComponent<import("@mui/material").SvgIconTypeMap<{}, "svg">> & {
1275
+ muiName: string;
1276
+ };
1277
+ subMenu: ({
1278
+ label: string;
1279
+ subMenu: {
1280
+ label: string;
1281
+ onClick: () => void;
1282
+ }[];
1283
+ onClick?: undefined;
1284
+ } | {
1285
+ label: string;
1286
+ subMenu: {
1287
+ label: string;
1288
+ type: string;
1289
+ checked: boolean;
1290
+ onClick: () => void;
1291
+ }[];
1292
+ onClick?: undefined;
1293
+ } | {
1294
+ label: string;
1295
+ onClick: () => void;
1296
+ subMenu?: undefined;
1297
+ })[];
392
1298
  } | {
393
1299
  label: string;
394
1300
  type: string;
395
1301
  checked: boolean;
396
1302
  onClick: () => void;
397
- icon?: undefined;
398
1303
  subMenu?: undefined;
1304
+ icon?: undefined;
399
1305
  } | {
400
1306
  label: string;
401
1307
  subMenu: {
@@ -404,19 +1310,19 @@ export default function stateModelF(pluginManager: PluginManager, configSchema:
404
1310
  checked: boolean;
405
1311
  onClick: () => void;
406
1312
  }[];
407
- icon?: undefined;
408
1313
  type?: undefined;
409
1314
  checked?: undefined;
410
1315
  onClick?: undefined;
1316
+ icon?: undefined;
411
1317
  } | {
412
1318
  label: string;
413
1319
  icon: import("@mui/material/OverridableComponent").OverridableComponent<import("@mui/material").SvgIconTypeMap<{}, "svg">> & {
414
1320
  muiName: string;
415
1321
  };
416
1322
  onClick: () => void;
417
- subMenu?: undefined;
418
1323
  type?: undefined;
419
1324
  checked?: undefined;
1325
+ subMenu?: undefined;
420
1326
  } | {
421
1327
  type: string;
422
1328
  icon: import("@mui/material/OverridableComponent").OverridableComponent<import("@mui/material").SvgIconTypeMap<{}, "svg">> & {
@@ -426,6 +1332,17 @@ export default function stateModelF(pluginManager: PluginManager, configSchema:
426
1332
  checked: boolean;
427
1333
  onClick: () => void;
428
1334
  subMenu?: undefined;
1335
+ } | {
1336
+ label: string;
1337
+ icon: import("@mui/material/OverridableComponent").OverridableComponent<import("@mui/material").SvgIconTypeMap<{}, "svg">> & {
1338
+ muiName: string;
1339
+ };
1340
+ subMenu: {
1341
+ label: string;
1342
+ type: string;
1343
+ checked: boolean;
1344
+ onClick: () => void;
1345
+ }[];
429
1346
  })[];
430
1347
  } & {
431
1348
  afterAttach(): void;
@@ -441,4 +1358,4 @@ export default function stateModelF(pluginManager: PluginManager, configSchema:
441
1358
  } & {
442
1359
  trackMenuItems(): import("@jbrowse/core/ui").MenuItem[];
443
1360
  adapterProps(): any;
444
- }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>;
1361
+ }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>;