@jbrowse/plugin-gccontent 3.6.5 → 4.0.0

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (44) hide show
  1. package/esm/GCContentAdapter/GCContentAdapter.d.ts +3 -2
  2. package/esm/GCContentAdapter/GCContentAdapter.js +103 -103
  3. package/esm/GCContentAdapter/configSchema.d.ts +2 -2
  4. package/esm/GCContentAdapter/index.js +2 -2
  5. package/esm/GCContentTrack/configSchema.d.ts +16 -11
  6. package/esm/GCContentTrack/index.js +17 -2
  7. package/esm/LinearGCContentDisplay/components/EditGCContentParams.js +1 -1
  8. package/esm/LinearGCContentDisplay/config1.d.ts +2 -2
  9. package/esm/LinearGCContentDisplay/config2.d.ts +2 -2
  10. package/esm/LinearGCContentDisplay/index.js +10 -7
  11. package/esm/LinearGCContentDisplay/shared.d.ts +1059 -93
  12. package/esm/LinearGCContentDisplay/shared.js +4 -6
  13. package/esm/LinearGCContentDisplay/stateModel1.d.ts +1026 -94
  14. package/esm/LinearGCContentDisplay/stateModel1.js +2 -2
  15. package/esm/LinearGCContentDisplay/stateModel2.d.ts +1026 -94
  16. package/esm/LinearGCContentDisplay/stateModel2.js +2 -2
  17. package/esm/index.js +4 -7
  18. package/package.json +27 -32
  19. package/dist/GCContentAdapter/GCContentAdapter.d.ts +0 -10
  20. package/dist/GCContentAdapter/GCContentAdapter.js +0 -132
  21. package/dist/GCContentAdapter/configSchema.d.ts +0 -16
  22. package/dist/GCContentAdapter/configSchema.js +0 -21
  23. package/dist/GCContentAdapter/index.d.ts +0 -2
  24. package/dist/GCContentAdapter/index.js +0 -52
  25. package/dist/GCContentTrack/configSchema.d.ts +0 -80
  26. package/dist/GCContentTrack/configSchema.js +0 -9
  27. package/dist/GCContentTrack/index.d.ts +0 -2
  28. package/dist/GCContentTrack/index.js +0 -20
  29. package/dist/LinearGCContentDisplay/components/EditGCContentParams.d.ts +0 -12
  30. package/dist/LinearGCContentDisplay/components/EditGCContentParams.js +0 -25
  31. package/dist/LinearGCContentDisplay/config1.d.ts +0 -11
  32. package/dist/LinearGCContentDisplay/config1.js +0 -20
  33. package/dist/LinearGCContentDisplay/config2.d.ts +0 -11
  34. package/dist/LinearGCContentDisplay/config2.js +0 -20
  35. package/dist/LinearGCContentDisplay/index.d.ts +0 -2
  36. package/dist/LinearGCContentDisplay/index.js +0 -40
  37. package/dist/LinearGCContentDisplay/shared.d.ts +0 -427
  38. package/dist/LinearGCContentDisplay/shared.js +0 -96
  39. package/dist/LinearGCContentDisplay/stateModel1.d.ts +0 -429
  40. package/dist/LinearGCContentDisplay/stateModel1.js +0 -13
  41. package/dist/LinearGCContentDisplay/stateModel2.d.ts +0 -429
  42. package/dist/LinearGCContentDisplay/stateModel2.js +0 -13
  43. package/dist/index.d.ts +0 -6
  44. package/dist/index.js +0 -21
package/esm/LinearGCContentDisplay/shared.d.ts CHANGED
@@ -1,28 +1,28 @@
1
1
  import type PluginManager from '@jbrowse/core/PluginManager';
2
2
  import type { AnyConfigurationSchemaType } from '@jbrowse/core/configuration';
3
- export default function SharedModelF(pluginManager: PluginManager, configSchema: AnyConfigurationSchemaType): import("mobx-state-tree").IModelType<{
4
- id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
5
- type: import("mobx-state-tree").ISimpleType<string>;
6
- rpcDriverName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
7
- } & {
8
- heightPreConfig: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
9
- } & {
10
- userBpPerPxLimit: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
11
- userByteSizeLimit: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
12
- } & {
13
- blockState: import("mobx-state-tree").IMapType<import("mobx-state-tree").IModelType<{
14
- key: import("mobx-state-tree").ISimpleType<string>;
15
- region: import("mobx-state-tree").IType<import("@jbrowse/core/util").Region, import("@jbrowse/core/util").Region, import("@jbrowse/core/util").Region>;
16
- reloadFlag: import("mobx-state-tree").IType<number | undefined, number, number>;
17
- isLeftEndOfDisplayedRegion: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
18
- isRightEndOfDisplayedRegion: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
3
+ export default function SharedModelF(pluginManager: PluginManager, configSchema: AnyConfigurationSchemaType): import("@jbrowse/mobx-state-tree").IModelType<{
4
+ id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
5
+ type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
6
+ rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
7
+ } & {
8
+ heightPreConfig: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<number>>;
9
+ } & {
10
+ userBpPerPxLimit: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<number>>;
11
+ userByteSizeLimit: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<number>>;
12
+ } & {
13
+ blockState: import("@jbrowse/mobx-state-tree").IMapType<import("@jbrowse/mobx-state-tree").IModelType<{
14
+ key: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
15
+ region: import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/core/util").Region, import("@jbrowse/core/util").Region, import("@jbrowse/core/util").Region>;
16
+ reloadFlag: import("@jbrowse/mobx-state-tree").IType<number | undefined, number, number>;
17
+ isLeftEndOfDisplayedRegion: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
18
+ isRightEndOfDisplayedRegion: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
19
19
  }, {
20
- stopToken: string | undefined;
20
+ stopToken: import("@jbrowse/core/util").StopToken | undefined;
21
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  filled: boolean;
22
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  reactElement: React.ReactElement | undefined;
23
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  features: Map<string, import("@jbrowse/core/util").Feature> | undefined;
24
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  layout: any;
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- status: string;
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+ blockStatusMessage: string;
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  error: unknown;
27
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  message: string | undefined;
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  maxHeightReached: boolean;
@@ -30,25 +30,32 @@ export default function SharedModelF(pluginManager: PluginManager, configSchema:
30
30
  model: {
31
31
  error?: unknown;
32
32
  reload: () => void;
33
- message: React.ReactNode;
34
- filled?: boolean;
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- status?: string;
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+ message?: React.ReactNode;
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+ statusMessage?: string;
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  reactElement?: React.ReactElement;
36
+ isRenderingPending?: boolean;
37
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  };
38
- }) => import("react/jsx-runtime").JSX.Element | undefined;
38
+ }) => import("react/jsx-runtime").JSX.Element;
39
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  renderProps: any;
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+ renderArgs: Record<string, unknown> | undefined;
41
+ isRenderingPending: boolean;
42
+ cachedDisplay: import("@jbrowse/core/util").AbstractDisplayModel | undefined;
40
43
  } & {
41
44
  doReload(): void;
42
- afterAttach(): void;
43
- setStatus(message: string): void;
44
- setLoading(newStopToken: string): void;
45
+ setStatusMessage(message: string): void;
46
+ setLoading(newStopToken: import("@jbrowse/core/util").StopToken): void;
45
47
  setMessage(messageText: string): void;
46
- setRendered(props: import("@jbrowse/plugin-linear-genome-view/src/BaseLinearDisplay/models/serverSideRenderedBlock").RenderedProps | undefined): void;
48
+ setRendered(props: import("@jbrowse/plugin-linear-genome-view/src/BaseLinearDisplay/models/serverSideRenderedBlock.ts").RenderedProps | undefined): void;
47
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  setError(error: unknown): void;
48
50
  reload(): void;
51
+ setCachedDisplay(display: import("@jbrowse/core/util").AbstractDisplayModel): void;
49
52
  beforeDestroy(): void;
50
- }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
51
- configuration: import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
53
+ } & {
54
+ readonly statusMessage: any;
55
+ } & {
56
+ afterAttach(): void;
57
+ }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
58
+ configuration: import("node_modules/@jbrowse/core/src/configuration/configurationSchema.ts").ConfigurationSchemaType<{
52
59
  maxFeatureScreenDensity: {
53
60
  type: string;
54
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  description: string;
@@ -75,54 +82,56 @@ export default function SharedModelF(pluginManager: PluginManager, configSchema:
75
82
  description: string;
76
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  defaultValue: never[];
77
84
  };
78
- }, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, "displayId">>;
79
- } & {
80
- selectedRendering: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
81
- resolution: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<number>, [undefined]>;
82
- fill: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<boolean>>;
83
- minSize: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
84
- color: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
85
- posColor: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
86
- negColor: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
87
- summaryScoreMode: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
88
- rendererTypeNameState: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
89
- scale: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
90
- autoscale: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
91
- displayCrossHatches: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<boolean>>;
92
- constraints: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").IModelType<{
93
- max: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
94
- min: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
95
- }, {}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>, [undefined]>;
85
+ }, import("node_modules/@jbrowse/core/src/configuration/configurationSchema.ts").ConfigurationSchemaOptions<undefined, "displayId">>;
86
+ showLegend: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>>;
87
+ showTooltips: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>>;
88
+ } & {
89
+ selectedRendering: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
90
+ resolution: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<number>, [undefined]>;
91
+ fill: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>>;
92
+ minSize: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<number>>;
93
+ color: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
94
+ posColor: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
95
+ negColor: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
96
+ summaryScoreMode: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
97
+ rendererTypeNameState: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
98
+ scale: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
99
+ autoscale: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
100
+ displayCrossHatches: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>>;
101
+ constraints: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").IModelType<{
102
+ max: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<number>>;
103
+ min: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<number>>;
104
+ }, {}, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>, [undefined]>;
96
105
  configuration: AnyConfigurationSchemaType;
97
106
  } & {
98
- type: import("mobx-state-tree").ISimpleType<"LinearWiggleDisplay">;
99
- invertedSetting: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<boolean>>;
107
+ type: import("@jbrowse/mobx-state-tree").ISimpleType<"LinearWiggleDisplay">;
108
+ invertedSetting: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>>;
100
109
  } & {
101
- windowSize: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
102
- windowDelta: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
110
+ windowSize: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<number>>;
111
+ windowDelta: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<number>>;
103
112
  }, {
104
113
  rendererTypeName: string;
105
114
  error: unknown;
106
- message: string | undefined;
115
+ statusMessage: string | undefined;
107
116
  } & {
108
117
  readonly RenderingComponent: React.FC<{
109
118
  model: {
110
119
  id: string;
111
120
  type: string;
112
121
  rpcDriverName: string | undefined;
113
- } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
122
+ } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
114
123
  rendererTypeName: string;
115
124
  error: unknown;
116
- message: string | undefined;
117
- } & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
118
- id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
119
- type: import("mobx-state-tree").ISimpleType<string>;
120
- rpcDriverName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
125
+ statusMessage: string | undefined;
126
+ } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
127
+ id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
128
+ type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
129
+ rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
121
130
  }, {
122
131
  rendererTypeName: string;
123
132
  error: unknown;
124
- message: string | undefined;
125
- }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
133
+ statusMessage: string | undefined;
134
+ }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
126
135
  onHorizontalScroll?: () => void;
127
136
  blockState?: Record<string, any>;
128
137
  }>;
@@ -131,30 +140,142 @@ export default function SharedModelF(pluginManager: PluginManager, configSchema:
131
140
  id: string;
132
141
  type: string;
133
142
  rpcDriverName: string | undefined;
134
- } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
143
+ } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
135
144
  rendererTypeName: string;
136
145
  error: unknown;
137
- message: string | undefined;
138
- } & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
139
- id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
140
- type: import("mobx-state-tree").ISimpleType<string>;
141
- rpcDriverName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
146
+ statusMessage: string | undefined;
147
+ } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
148
+ id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
149
+ type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
150
+ rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
142
151
  }, {
143
152
  rendererTypeName: string;
144
153
  error: unknown;
145
- message: string | undefined;
146
- }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
154
+ statusMessage: string | undefined;
155
+ }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
147
156
  }> | null;
148
157
  readonly adapterConfig: any;
149
- readonly parentTrack: any;
158
+ readonly parentTrack: import("@jbrowse/core/util").AbstractTrackModel;
159
+ readonly parentDisplay: any;
160
+ readonly effectiveRpcDriverName: any;
161
+ } & {
150
162
  renderProps(): any;
163
+ renderingProps(): {
164
+ displayModel: {
165
+ id: string;
166
+ type: string;
167
+ rpcDriverName: string | undefined;
168
+ } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
169
+ rendererTypeName: string;
170
+ error: unknown;
171
+ statusMessage: string | undefined;
172
+ } & {
173
+ readonly RenderingComponent: React.FC<{
174
+ model: {
175
+ id: string;
176
+ type: string;
177
+ rpcDriverName: string | undefined;
178
+ } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
179
+ rendererTypeName: string;
180
+ error: unknown;
181
+ statusMessage: string | undefined;
182
+ } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
183
+ id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
184
+ type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
185
+ rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
186
+ }, {
187
+ rendererTypeName: string;
188
+ error: unknown;
189
+ statusMessage: string | undefined;
190
+ }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
191
+ onHorizontalScroll?: () => void;
192
+ blockState?: Record<string, any>;
193
+ }>;
194
+ readonly DisplayBlurb: React.FC<{
195
+ model: {
196
+ id: string;
197
+ type: string;
198
+ rpcDriverName: string | undefined;
199
+ } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
200
+ rendererTypeName: string;
201
+ error: unknown;
202
+ statusMessage: string | undefined;
203
+ } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
204
+ id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
205
+ type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
206
+ rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
207
+ }, {
208
+ rendererTypeName: string;
209
+ error: unknown;
210
+ statusMessage: string | undefined;
211
+ }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
212
+ }> | null;
213
+ readonly adapterConfig: any;
214
+ readonly parentTrack: import("@jbrowse/core/util").AbstractTrackModel;
215
+ readonly parentDisplay: any;
216
+ readonly effectiveRpcDriverName: any;
217
+ } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
218
+ id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
219
+ type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
220
+ rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
221
+ }, {
222
+ rendererTypeName: string;
223
+ error: unknown;
224
+ statusMessage: string | undefined;
225
+ } & {
226
+ readonly RenderingComponent: React.FC<{
227
+ model: {
228
+ id: string;
229
+ type: string;
230
+ rpcDriverName: string | undefined;
231
+ } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
232
+ rendererTypeName: string;
233
+ error: unknown;
234
+ statusMessage: string | undefined;
235
+ } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
236
+ id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
237
+ type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
238
+ rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
239
+ }, {
240
+ rendererTypeName: string;
241
+ error: unknown;
242
+ statusMessage: string | undefined;
243
+ }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
244
+ onHorizontalScroll?: () => void;
245
+ blockState?: Record<string, any>;
246
+ }>;
247
+ readonly DisplayBlurb: React.FC<{
248
+ model: {
249
+ id: string;
250
+ type: string;
251
+ rpcDriverName: string | undefined;
252
+ } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
253
+ rendererTypeName: string;
254
+ error: unknown;
255
+ statusMessage: string | undefined;
256
+ } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
257
+ id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
258
+ type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
259
+ rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
260
+ }, {
261
+ rendererTypeName: string;
262
+ error: unknown;
263
+ statusMessage: string | undefined;
264
+ }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
265
+ }> | null;
266
+ readonly adapterConfig: any;
267
+ readonly parentTrack: import("@jbrowse/core/util").AbstractTrackModel;
268
+ readonly parentDisplay: any;
269
+ readonly effectiveRpcDriverName: any;
270
+ }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
271
+ };
151
272
  readonly rendererType: import("@jbrowse/core/pluggableElementTypes").RendererType;
152
273
  readonly DisplayMessageComponent: undefined | React.FC<any>;
153
274
  trackMenuItems(): import("@jbrowse/core/ui").MenuItem[];
154
275
  readonly viewMenuActions: import("@jbrowse/core/ui").MenuItem[];
155
276
  regionCannotBeRendered(): null;
156
277
  } & {
157
- setMessage(arg?: string): void;
278
+ setStatusMessage(arg?: string): void;
158
279
  setError(error?: unknown): void;
159
280
  setRpcDriverName(rpcDriverName: string): void;
160
281
  reload(): void;
@@ -189,11 +310,13 @@ export default function SharedModelF(pluginManager: PluginManager, configSchema:
189
310
  readonly regionTooLarge: boolean;
190
311
  readonly regionTooLargeReason: string;
191
312
  } & {
192
- readonly statsReadyAndRegionNotTooLarge: boolean;
313
+ readonly featureDensityStatsReadyAndRegionNotTooLarge: boolean;
193
314
  regionCannotBeRenderedText(_region: import("@jbrowse/core/util").Region): "" | "Force load to see features";
194
315
  regionCannotBeRendered(_region: import("@jbrowse/core/util").Region): import("react/jsx-runtime").JSX.Element | null;
195
316
  } & {
317
+ mouseoverExtraInformation: string | undefined;
196
318
  featureIdUnderMouse: undefined | string;
319
+ subfeatureIdUnderMouse: undefined | string;
197
320
  contextMenuFeature: undefined | import("@jbrowse/core/util").Feature;
198
321
  } & {
199
322
  readonly DisplayMessageComponent: undefined | React.FC<any>;
@@ -202,14 +325,23 @@ export default function SharedModelF(pluginManager: PluginManager, configSchema:
202
325
  } & {
203
326
  readonly renderDelay: number;
204
327
  readonly TooltipComponent: import("@jbrowse/core/util").AnyReactComponentType;
328
+ legendItems(_theme?: import("@mui/material").Theme): import("@jbrowse/plugin-linear-genome-view").LegendItem[];
329
+ svgLegendWidth(theme?: import("@mui/material").Theme): number;
205
330
  readonly selectedFeatureId: string | undefined;
206
- copyInfoToClipboard(feature: import("@jbrowse/core/util").Feature): void;
331
+ readonly featureWidgetType: {
332
+ type: string;
333
+ id: string;
334
+ };
207
335
  } & {
336
+ readonly showTooltipsEnabled: boolean;
208
337
  readonly features: import("@jbrowse/core/util/compositeMap").default<string, import("@jbrowse/core/util").Feature>;
209
338
  readonly featureUnderMouse: import("@jbrowse/core/util").Feature | undefined;
339
+ getFeatureById(featureId: string, parentFeatureId?: string): import("@jbrowse/core/util").Feature | undefined;
340
+ readonly layoutFeatures: import("@jbrowse/core/util/compositeMap").default<string, import("@jbrowse/plugin-linear-genome-view/src/BaseLinearDisplay/types.ts").LayoutRecord>;
210
341
  getFeatureOverlapping(blockKey: string, x: number, y: number): string | undefined;
211
- getFeatureByID(blockKey: string, id: string): [number, number, number, number] | undefined;
212
- searchFeatureByID(id: string): [number, number, number, number] | undefined;
342
+ getFeatureByID(blockKey: string, id: string): import("@jbrowse/plugin-linear-genome-view/src/BaseLinearDisplay/types.ts").LayoutRecord | undefined;
343
+ searchFeatureByID(id: string): import("@jbrowse/plugin-linear-genome-view/src/BaseLinearDisplay/types.ts").LayoutRecord | undefined;
344
+ readonly floatingLabelData: Map<string, import("@jbrowse/plugin-linear-genome-view/src/BaseLinearDisplay/components/util.ts").FeatureLabelData>;
213
345
  } & {
214
346
  addBlock(key: string, block: import("@jbrowse/core/util/blockTypes").BaseBlock): void;
215
347
  deleteBlock(key: string): void;
@@ -217,12 +349,746 @@ export default function SharedModelF(pluginManager: PluginManager, configSchema:
217
349
  navToFeature(feature: import("@jbrowse/core/util").Feature): void;
218
350
  clearFeatureSelection(): void;
219
351
  setFeatureIdUnderMouse(feature?: string): void;
352
+ setSubfeatureIdUnderMouse(subfeatureId?: string): void;
220
353
  setContextMenuFeature(feature?: import("@jbrowse/core/util").Feature): void;
354
+ setMouseoverExtraInformation(extra?: string): void;
355
+ setShowLegend(s: boolean): void;
356
+ setShowTooltips(arg: boolean): void;
221
357
  } & {
222
358
  reload(): Promise<void>;
359
+ } & {
360
+ selectFeatureById: (featureId: string, parentFeatureId?: string | undefined, topLevelFeatureId?: string | undefined) => Promise<void>;
361
+ setContextMenuFeatureById: (featureId: string, parentFeatureId?: string | undefined, topLevelFeatureId?: string | undefined) => Promise<void>;
223
362
  } & {
224
363
  trackMenuItems(): import("@jbrowse/core/ui").MenuItem[];
225
364
  contextMenuItems(): import("@jbrowse/core/ui").MenuItem[];
365
+ renderingProps(): {
366
+ displayModel: {
367
+ id: string;
368
+ type: string;
369
+ rpcDriverName: string | undefined;
370
+ heightPreConfig: number | undefined;
371
+ userBpPerPxLimit: number | undefined;
372
+ userByteSizeLimit: number | undefined;
373
+ blockState: import("@jbrowse/mobx-state-tree").IMSTMap<import("@jbrowse/mobx-state-tree").IModelType<{
374
+ key: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
375
+ region: import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/core/util").Region, import("@jbrowse/core/util").Region, import("@jbrowse/core/util").Region>;
376
+ reloadFlag: import("@jbrowse/mobx-state-tree").IType<number | undefined, number, number>;
377
+ isLeftEndOfDisplayedRegion: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
378
+ isRightEndOfDisplayedRegion: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
379
+ }, {
380
+ stopToken: import("@jbrowse/core/util").StopToken | undefined;
381
+ filled: boolean;
382
+ reactElement: React.ReactElement | undefined;
383
+ features: Map<string, import("@jbrowse/core/util").Feature> | undefined;
384
+ layout: any;
385
+ blockStatusMessage: string;
386
+ error: unknown;
387
+ message: string | undefined;
388
+ maxHeightReached: boolean;
389
+ ReactComponent: ({ model, }: {
390
+ model: {
391
+ error?: unknown;
392
+ reload: () => void;
393
+ message?: React.ReactNode;
394
+ statusMessage?: string;
395
+ reactElement?: React.ReactElement;
396
+ isRenderingPending?: boolean;
397
+ };
398
+ }) => import("react/jsx-runtime").JSX.Element;
399
+ renderProps: any;
400
+ renderArgs: Record<string, unknown> | undefined;
401
+ isRenderingPending: boolean;
402
+ cachedDisplay: import("@jbrowse/core/util").AbstractDisplayModel | undefined;
403
+ } & {
404
+ doReload(): void;
405
+ setStatusMessage(message: string): void;
406
+ setLoading(newStopToken: import("@jbrowse/core/util").StopToken): void;
407
+ setMessage(messageText: string): void;
408
+ setRendered(props: import("@jbrowse/plugin-linear-genome-view/src/BaseLinearDisplay/models/serverSideRenderedBlock.ts").RenderedProps | undefined): void;
409
+ setError(error: unknown): void;
410
+ reload(): void;
411
+ setCachedDisplay(display: import("@jbrowse/core/util").AbstractDisplayModel): void;
412
+ beforeDestroy(): void;
413
+ } & {
414
+ readonly statusMessage: any;
415
+ } & {
416
+ afterAttach(): void;
417
+ }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>> & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IMapType<import("@jbrowse/mobx-state-tree").IModelType<{
418
+ key: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
419
+ region: import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/core/util").Region, import("@jbrowse/core/util").Region, import("@jbrowse/core/util").Region>;
420
+ reloadFlag: import("@jbrowse/mobx-state-tree").IType<number | undefined, number, number>;
421
+ isLeftEndOfDisplayedRegion: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
422
+ isRightEndOfDisplayedRegion: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
423
+ }, {
424
+ stopToken: import("@jbrowse/core/util").StopToken | undefined;
425
+ filled: boolean;
426
+ reactElement: React.ReactElement | undefined;
427
+ features: Map<string, import("@jbrowse/core/util").Feature> | undefined;
428
+ layout: any;
429
+ blockStatusMessage: string;
430
+ error: unknown;
431
+ message: string | undefined;
432
+ maxHeightReached: boolean;
433
+ ReactComponent: ({ model, }: {
434
+ model: {
435
+ error?: unknown;
436
+ reload: () => void;
437
+ message?: React.ReactNode;
438
+ statusMessage?: string;
439
+ reactElement?: React.ReactElement;
440
+ isRenderingPending?: boolean;
441
+ };
442
+ }) => import("react/jsx-runtime").JSX.Element;
443
+ renderProps: any;
444
+ renderArgs: Record<string, unknown> | undefined;
445
+ isRenderingPending: boolean;
446
+ cachedDisplay: import("@jbrowse/core/util").AbstractDisplayModel | undefined;
447
+ } & {
448
+ doReload(): void;
449
+ setStatusMessage(message: string): void;
450
+ setLoading(newStopToken: import("@jbrowse/core/util").StopToken): void;
451
+ setMessage(messageText: string): void;
452
+ setRendered(props: import("@jbrowse/plugin-linear-genome-view/src/BaseLinearDisplay/models/serverSideRenderedBlock.ts").RenderedProps | undefined): void;
453
+ setError(error: unknown): void;
454
+ reload(): void;
455
+ setCachedDisplay(display: import("@jbrowse/core/util").AbstractDisplayModel): void;
456
+ beforeDestroy(): void;
457
+ } & {
458
+ readonly statusMessage: any;
459
+ } & {
460
+ afterAttach(): void;
461
+ }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>>;
462
+ configuration: {
463
+ [x: string]: any;
464
+ } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
465
+ setSubschema(slotName: string, data: Record<string, unknown>): Record<string, unknown> | ({
466
+ [x: string]: any;
467
+ } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
468
+ setSubschema(slotName: string, data: Record<string, unknown>): Record<string, unknown> | ({
469
+ [x: string]: any;
470
+ } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & any & import("@jbrowse/mobx-state-tree").IStateTreeNode<AnyConfigurationSchemaType>);
471
+ } & import("@jbrowse/mobx-state-tree").IStateTreeNode<AnyConfigurationSchemaType>);
472
+ } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("node_modules/@jbrowse/core/src/configuration/configurationSchema.ts").ConfigurationSchemaType<{
473
+ maxFeatureScreenDensity: {
474
+ type: string;
475
+ description: string;
476
+ defaultValue: number;
477
+ };
478
+ fetchSizeLimit: {
479
+ type: string;
480
+ defaultValue: number;
481
+ description: string;
482
+ };
483
+ height: {
484
+ type: string;
485
+ defaultValue: number;
486
+ description: string;
487
+ };
488
+ mouseover: {
489
+ type: string;
490
+ description: string;
491
+ defaultValue: string;
492
+ contextVariable: string[];
493
+ };
494
+ jexlFilters: {
495
+ type: string;
496
+ description: string;
497
+ defaultValue: never[];
498
+ };
499
+ }, import("node_modules/@jbrowse/core/src/configuration/configurationSchema.ts").ConfigurationSchemaOptions<undefined, "displayId">>>;
500
+ showLegend: boolean | undefined;
501
+ showTooltips: boolean | undefined;
502
+ } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
503
+ rendererTypeName: string;
504
+ error: unknown;
505
+ statusMessage: string | undefined;
506
+ } & {
507
+ readonly RenderingComponent: React.FC<{
508
+ model: {
509
+ id: string;
510
+ type: string;
511
+ rpcDriverName: string | undefined;
512
+ } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
513
+ rendererTypeName: string;
514
+ error: unknown;
515
+ statusMessage: string | undefined;
516
+ } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
517
+ id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
518
+ type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
519
+ rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
520
+ }, {
521
+ rendererTypeName: string;
522
+ error: unknown;
523
+ statusMessage: string | undefined;
524
+ }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
525
+ onHorizontalScroll?: () => void;
526
+ blockState?: Record<string, any>;
527
+ }>;
528
+ readonly DisplayBlurb: React.FC<{
529
+ model: {
530
+ id: string;
531
+ type: string;
532
+ rpcDriverName: string | undefined;
533
+ } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
534
+ rendererTypeName: string;
535
+ error: unknown;
536
+ statusMessage: string | undefined;
537
+ } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
538
+ id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
539
+ type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
540
+ rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
541
+ }, {
542
+ rendererTypeName: string;
543
+ error: unknown;
544
+ statusMessage: string | undefined;
545
+ }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
546
+ }> | null;
547
+ readonly adapterConfig: any;
548
+ readonly parentTrack: import("@jbrowse/core/util").AbstractTrackModel;
549
+ readonly parentDisplay: any;
550
+ readonly effectiveRpcDriverName: any;
551
+ } & {
552
+ renderProps(): any;
553
+ renderingProps(): {
554
+ displayModel: {
555
+ id: string;
556
+ type: string;
557
+ rpcDriverName: string | undefined;
558
+ } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
559
+ rendererTypeName: string;
560
+ error: unknown;
561
+ statusMessage: string | undefined;
562
+ } & {
563
+ readonly RenderingComponent: React.FC<{
564
+ model: {
565
+ id: string;
566
+ type: string;
567
+ rpcDriverName: string | undefined;
568
+ } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
569
+ rendererTypeName: string;
570
+ error: unknown;
571
+ statusMessage: string | undefined;
572
+ } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
573
+ id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
574
+ type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
575
+ rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
576
+ }, {
577
+ rendererTypeName: string;
578
+ error: unknown;
579
+ statusMessage: string | undefined;
580
+ }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
581
+ onHorizontalScroll?: () => void;
582
+ blockState?: Record<string, any>;
583
+ }>;
584
+ readonly DisplayBlurb: React.FC<{
585
+ model: {
586
+ id: string;
587
+ type: string;
588
+ rpcDriverName: string | undefined;
589
+ } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
590
+ rendererTypeName: string;
591
+ error: unknown;
592
+ statusMessage: string | undefined;
593
+ } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
594
+ id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
595
+ type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
596
+ rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
597
+ }, {
598
+ rendererTypeName: string;
599
+ error: unknown;
600
+ statusMessage: string | undefined;
601
+ }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
602
+ }> | null;
603
+ readonly adapterConfig: any;
604
+ readonly parentTrack: import("@jbrowse/core/util").AbstractTrackModel;
605
+ readonly parentDisplay: any;
606
+ readonly effectiveRpcDriverName: any;
607
+ } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
608
+ id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
609
+ type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
610
+ rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
611
+ }, {
612
+ rendererTypeName: string;
613
+ error: unknown;
614
+ statusMessage: string | undefined;
615
+ } & {
616
+ readonly RenderingComponent: React.FC<{
617
+ model: {
618
+ id: string;
619
+ type: string;
620
+ rpcDriverName: string | undefined;
621
+ } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
622
+ rendererTypeName: string;
623
+ error: unknown;
624
+ statusMessage: string | undefined;
625
+ } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
626
+ id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
627
+ type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
628
+ rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
629
+ }, {
630
+ rendererTypeName: string;
631
+ error: unknown;
632
+ statusMessage: string | undefined;
633
+ }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
634
+ onHorizontalScroll?: () => void;
635
+ blockState?: Record<string, any>;
636
+ }>;
637
+ readonly DisplayBlurb: React.FC<{
638
+ model: {
639
+ id: string;
640
+ type: string;
641
+ rpcDriverName: string | undefined;
642
+ } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
643
+ rendererTypeName: string;
644
+ error: unknown;
645
+ statusMessage: string | undefined;
646
+ } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
647
+ id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
648
+ type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
649
+ rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
650
+ }, {
651
+ rendererTypeName: string;
652
+ error: unknown;
653
+ statusMessage: string | undefined;
654
+ }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
655
+ }> | null;
656
+ readonly adapterConfig: any;
657
+ readonly parentTrack: import("@jbrowse/core/util").AbstractTrackModel;
658
+ readonly parentDisplay: any;
659
+ readonly effectiveRpcDriverName: any;
660
+ }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
661
+ };
662
+ readonly rendererType: import("@jbrowse/core/pluggableElementTypes").RendererType;
663
+ readonly DisplayMessageComponent: undefined | React.FC<any>;
664
+ trackMenuItems(): import("@jbrowse/core/ui").MenuItem[];
665
+ readonly viewMenuActions: import("@jbrowse/core/ui").MenuItem[];
666
+ regionCannotBeRendered(): null;
667
+ } & {
668
+ setStatusMessage(arg?: string): void;
669
+ setError(error?: unknown): void;
670
+ setRpcDriverName(rpcDriverName: string): void;
671
+ reload(): void;
672
+ } & {
673
+ scrollTop: number;
674
+ } & {
675
+ readonly height: number;
676
+ } & {
677
+ setScrollTop(scrollTop: number): void;
678
+ setHeight(displayHeight: number): number;
679
+ resizeHeight(distance: number): number;
680
+ } & {
681
+ featureDensityStatsP: undefined | Promise<import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats>;
682
+ featureDensityStats: undefined | import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats;
683
+ currStatsBpPerPx: number;
684
+ } & {
685
+ readonly currentBytesRequested: number;
686
+ readonly currentFeatureScreenDensity: number;
687
+ readonly maxFeatureScreenDensity: any;
688
+ readonly featureDensityStatsReady: boolean;
689
+ readonly maxAllowableBytes: number;
690
+ } & {
691
+ afterAttach(): void;
692
+ } & {
693
+ setCurrStatsBpPerPx(n: number): void;
694
+ setFeatureDensityStatsLimit(stats?: import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats): void;
695
+ getFeatureDensityStats(): Promise<import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats>;
696
+ setFeatureDensityStatsP(arg: any): void;
697
+ setFeatureDensityStats(featureDensityStats?: import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats): void;
698
+ clearFeatureDensityStats(): void;
699
+ } & {
700
+ readonly regionTooLarge: boolean;
701
+ readonly regionTooLargeReason: string;
702
+ } & {
703
+ readonly featureDensityStatsReadyAndRegionNotTooLarge: boolean;
704
+ regionCannotBeRenderedText(_region: import("@jbrowse/core/util").Region): "" | "Force load to see features";
705
+ regionCannotBeRendered(_region: import("@jbrowse/core/util").Region): import("react/jsx-runtime").JSX.Element | null;
706
+ } & {
707
+ mouseoverExtraInformation: string | undefined;
708
+ featureIdUnderMouse: undefined | string;
709
+ subfeatureIdUnderMouse: undefined | string;
710
+ contextMenuFeature: undefined | import("@jbrowse/core/util").Feature;
711
+ } & {
712
+ readonly DisplayMessageComponent: undefined | React.FC<any>;
713
+ readonly blockType: "staticBlocks" | "dynamicBlocks";
714
+ readonly blockDefinitions: import("@jbrowse/core/util/blockTypes").BlockSet;
715
+ } & {
716
+ readonly renderDelay: number;
717
+ readonly TooltipComponent: import("@jbrowse/core/util").AnyReactComponentType;
718
+ legendItems(_theme?: import("@mui/material").Theme): import("@jbrowse/plugin-linear-genome-view").LegendItem[];
719
+ svgLegendWidth(theme?: import("@mui/material").Theme): number;
720
+ readonly selectedFeatureId: string | undefined;
721
+ readonly featureWidgetType: {
722
+ type: string;
723
+ id: string;
724
+ };
725
+ } & {
726
+ readonly showTooltipsEnabled: boolean;
727
+ readonly features: import("@jbrowse/core/util/compositeMap").default<string, import("@jbrowse/core/util").Feature>;
728
+ readonly featureUnderMouse: import("@jbrowse/core/util").Feature | undefined;
729
+ getFeatureById(featureId: string, parentFeatureId?: string): import("@jbrowse/core/util").Feature | undefined;
730
+ readonly layoutFeatures: import("@jbrowse/core/util/compositeMap").default<string, import("@jbrowse/plugin-linear-genome-view/src/BaseLinearDisplay/types.ts").LayoutRecord>;
731
+ getFeatureOverlapping(blockKey: string, x: number, y: number): string | undefined;
732
+ getFeatureByID(blockKey: string, id: string): import("@jbrowse/plugin-linear-genome-view/src/BaseLinearDisplay/types.ts").LayoutRecord | undefined;
733
+ searchFeatureByID(id: string): import("@jbrowse/plugin-linear-genome-view/src/BaseLinearDisplay/types.ts").LayoutRecord | undefined;
734
+ readonly floatingLabelData: Map<string, import("@jbrowse/plugin-linear-genome-view/src/BaseLinearDisplay/components/util.ts").FeatureLabelData>;
735
+ } & {
736
+ addBlock(key: string, block: import("@jbrowse/core/util/blockTypes").BaseBlock): void;
737
+ deleteBlock(key: string): void;
738
+ selectFeature(feature: import("@jbrowse/core/util").Feature): void;
739
+ navToFeature(feature: import("@jbrowse/core/util").Feature): void;
740
+ clearFeatureSelection(): void;
741
+ setFeatureIdUnderMouse(feature?: string): void;
742
+ setSubfeatureIdUnderMouse(subfeatureId?: string): void;
743
+ setContextMenuFeature(feature?: import("@jbrowse/core/util").Feature): void;
744
+ setMouseoverExtraInformation(extra?: string): void;
745
+ setShowLegend(s: boolean): void;
746
+ setShowTooltips(arg: boolean): void;
747
+ } & {
748
+ reload(): Promise<void>;
749
+ } & {
750
+ selectFeatureById: (featureId: string, parentFeatureId?: string | undefined, topLevelFeatureId?: string | undefined) => Promise<void>;
751
+ setContextMenuFeatureById: (featureId: string, parentFeatureId?: string | undefined, topLevelFeatureId?: string | undefined) => Promise<void>;
752
+ } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
753
+ id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
754
+ type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
755
+ rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
756
+ } & {
757
+ heightPreConfig: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<number>>;
758
+ } & {
759
+ userBpPerPxLimit: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<number>>;
760
+ userByteSizeLimit: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<number>>;
761
+ } & {
762
+ blockState: import("@jbrowse/mobx-state-tree").IMapType<import("@jbrowse/mobx-state-tree").IModelType<{
763
+ key: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
764
+ region: import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/core/util").Region, import("@jbrowse/core/util").Region, import("@jbrowse/core/util").Region>;
765
+ reloadFlag: import("@jbrowse/mobx-state-tree").IType<number | undefined, number, number>;
766
+ isLeftEndOfDisplayedRegion: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
767
+ isRightEndOfDisplayedRegion: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
768
+ }, {
769
+ stopToken: import("@jbrowse/core/util").StopToken | undefined;
770
+ filled: boolean;
771
+ reactElement: React.ReactElement | undefined;
772
+ features: Map<string, import("@jbrowse/core/util").Feature> | undefined;
773
+ layout: any;
774
+ blockStatusMessage: string;
775
+ error: unknown;
776
+ message: string | undefined;
777
+ maxHeightReached: boolean;
778
+ ReactComponent: ({ model, }: {
779
+ model: {
780
+ error?: unknown;
781
+ reload: () => void;
782
+ message?: React.ReactNode;
783
+ statusMessage?: string;
784
+ reactElement?: React.ReactElement;
785
+ isRenderingPending?: boolean;
786
+ };
787
+ }) => import("react/jsx-runtime").JSX.Element;
788
+ renderProps: any;
789
+ renderArgs: Record<string, unknown> | undefined;
790
+ isRenderingPending: boolean;
791
+ cachedDisplay: import("@jbrowse/core/util").AbstractDisplayModel | undefined;
792
+ } & {
793
+ doReload(): void;
794
+ setStatusMessage(message: string): void;
795
+ setLoading(newStopToken: import("@jbrowse/core/util").StopToken): void;
796
+ setMessage(messageText: string): void;
797
+ setRendered(props: import("@jbrowse/plugin-linear-genome-view/src/BaseLinearDisplay/models/serverSideRenderedBlock.ts").RenderedProps | undefined): void;
798
+ setError(error: unknown): void;
799
+ reload(): void;
800
+ setCachedDisplay(display: import("@jbrowse/core/util").AbstractDisplayModel): void;
801
+ beforeDestroy(): void;
802
+ } & {
803
+ readonly statusMessage: any;
804
+ } & {
805
+ afterAttach(): void;
806
+ }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
807
+ configuration: import("node_modules/@jbrowse/core/src/configuration/configurationSchema.ts").ConfigurationSchemaType<{
808
+ maxFeatureScreenDensity: {
809
+ type: string;
810
+ description: string;
811
+ defaultValue: number;
812
+ };
813
+ fetchSizeLimit: {
814
+ type: string;
815
+ defaultValue: number;
816
+ description: string;
817
+ };
818
+ height: {
819
+ type: string;
820
+ defaultValue: number;
821
+ description: string;
822
+ };
823
+ mouseover: {
824
+ type: string;
825
+ description: string;
826
+ defaultValue: string;
827
+ contextVariable: string[];
828
+ };
829
+ jexlFilters: {
830
+ type: string;
831
+ description: string;
832
+ defaultValue: never[];
833
+ };
834
+ }, import("node_modules/@jbrowse/core/src/configuration/configurationSchema.ts").ConfigurationSchemaOptions<undefined, "displayId">>;
835
+ showLegend: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>>;
836
+ showTooltips: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>>;
837
+ }, {
838
+ rendererTypeName: string;
839
+ error: unknown;
840
+ statusMessage: string | undefined;
841
+ } & {
842
+ readonly RenderingComponent: React.FC<{
843
+ model: {
844
+ id: string;
845
+ type: string;
846
+ rpcDriverName: string | undefined;
847
+ } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
848
+ rendererTypeName: string;
849
+ error: unknown;
850
+ statusMessage: string | undefined;
851
+ } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
852
+ id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
853
+ type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
854
+ rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
855
+ }, {
856
+ rendererTypeName: string;
857
+ error: unknown;
858
+ statusMessage: string | undefined;
859
+ }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
860
+ onHorizontalScroll?: () => void;
861
+ blockState?: Record<string, any>;
862
+ }>;
863
+ readonly DisplayBlurb: React.FC<{
864
+ model: {
865
+ id: string;
866
+ type: string;
867
+ rpcDriverName: string | undefined;
868
+ } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
869
+ rendererTypeName: string;
870
+ error: unknown;
871
+ statusMessage: string | undefined;
872
+ } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
873
+ id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
874
+ type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
875
+ rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
876
+ }, {
877
+ rendererTypeName: string;
878
+ error: unknown;
879
+ statusMessage: string | undefined;
880
+ }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
881
+ }> | null;
882
+ readonly adapterConfig: any;
883
+ readonly parentTrack: import("@jbrowse/core/util").AbstractTrackModel;
884
+ readonly parentDisplay: any;
885
+ readonly effectiveRpcDriverName: any;
886
+ } & {
887
+ renderProps(): any;
888
+ renderingProps(): {
889
+ displayModel: {
890
+ id: string;
891
+ type: string;
892
+ rpcDriverName: string | undefined;
893
+ } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
894
+ rendererTypeName: string;
895
+ error: unknown;
896
+ statusMessage: string | undefined;
897
+ } & {
898
+ readonly RenderingComponent: React.FC<{
899
+ model: {
900
+ id: string;
901
+ type: string;
902
+ rpcDriverName: string | undefined;
903
+ } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
904
+ rendererTypeName: string;
905
+ error: unknown;
906
+ statusMessage: string | undefined;
907
+ } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
908
+ id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
909
+ type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
910
+ rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
911
+ }, {
912
+ rendererTypeName: string;
913
+ error: unknown;
914
+ statusMessage: string | undefined;
915
+ }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
916
+ onHorizontalScroll?: () => void;
917
+ blockState?: Record<string, any>;
918
+ }>;
919
+ readonly DisplayBlurb: React.FC<{
920
+ model: {
921
+ id: string;
922
+ type: string;
923
+ rpcDriverName: string | undefined;
924
+ } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
925
+ rendererTypeName: string;
926
+ error: unknown;
927
+ statusMessage: string | undefined;
928
+ } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
929
+ id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
930
+ type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
931
+ rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
932
+ }, {
933
+ rendererTypeName: string;
934
+ error: unknown;
935
+ statusMessage: string | undefined;
936
+ }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
937
+ }> | null;
938
+ readonly adapterConfig: any;
939
+ readonly parentTrack: import("@jbrowse/core/util").AbstractTrackModel;
940
+ readonly parentDisplay: any;
941
+ readonly effectiveRpcDriverName: any;
942
+ } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
943
+ id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
944
+ type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
945
+ rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
946
+ }, {
947
+ rendererTypeName: string;
948
+ error: unknown;
949
+ statusMessage: string | undefined;
950
+ } & {
951
+ readonly RenderingComponent: React.FC<{
952
+ model: {
953
+ id: string;
954
+ type: string;
955
+ rpcDriverName: string | undefined;
956
+ } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
957
+ rendererTypeName: string;
958
+ error: unknown;
959
+ statusMessage: string | undefined;
960
+ } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
961
+ id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
962
+ type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
963
+ rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
964
+ }, {
965
+ rendererTypeName: string;
966
+ error: unknown;
967
+ statusMessage: string | undefined;
968
+ }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
969
+ onHorizontalScroll?: () => void;
970
+ blockState?: Record<string, any>;
971
+ }>;
972
+ readonly DisplayBlurb: React.FC<{
973
+ model: {
974
+ id: string;
975
+ type: string;
976
+ rpcDriverName: string | undefined;
977
+ } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
978
+ rendererTypeName: string;
979
+ error: unknown;
980
+ statusMessage: string | undefined;
981
+ } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
982
+ id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
983
+ type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
984
+ rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
985
+ }, {
986
+ rendererTypeName: string;
987
+ error: unknown;
988
+ statusMessage: string | undefined;
989
+ }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
990
+ }> | null;
991
+ readonly adapterConfig: any;
992
+ readonly parentTrack: import("@jbrowse/core/util").AbstractTrackModel;
993
+ readonly parentDisplay: any;
994
+ readonly effectiveRpcDriverName: any;
995
+ }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
996
+ };
997
+ readonly rendererType: import("@jbrowse/core/pluggableElementTypes").RendererType;
998
+ readonly DisplayMessageComponent: undefined | React.FC<any>;
999
+ trackMenuItems(): import("@jbrowse/core/ui").MenuItem[];
1000
+ readonly viewMenuActions: import("@jbrowse/core/ui").MenuItem[];
1001
+ regionCannotBeRendered(): null;
1002
+ } & {
1003
+ setStatusMessage(arg?: string): void;
1004
+ setError(error?: unknown): void;
1005
+ setRpcDriverName(rpcDriverName: string): void;
1006
+ reload(): void;
1007
+ } & {
1008
+ scrollTop: number;
1009
+ } & {
1010
+ readonly height: number;
1011
+ } & {
1012
+ setScrollTop(scrollTop: number): void;
1013
+ setHeight(displayHeight: number): number;
1014
+ resizeHeight(distance: number): number;
1015
+ } & {
1016
+ featureDensityStatsP: undefined | Promise<import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats>;
1017
+ featureDensityStats: undefined | import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats;
1018
+ currStatsBpPerPx: number;
1019
+ } & {
1020
+ readonly currentBytesRequested: number;
1021
+ readonly currentFeatureScreenDensity: number;
1022
+ readonly maxFeatureScreenDensity: any;
1023
+ readonly featureDensityStatsReady: boolean;
1024
+ readonly maxAllowableBytes: number;
1025
+ } & {
1026
+ afterAttach(): void;
1027
+ } & {
1028
+ setCurrStatsBpPerPx(n: number): void;
1029
+ setFeatureDensityStatsLimit(stats?: import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats): void;
1030
+ getFeatureDensityStats(): Promise<import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats>;
1031
+ setFeatureDensityStatsP(arg: any): void;
1032
+ setFeatureDensityStats(featureDensityStats?: import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats): void;
1033
+ clearFeatureDensityStats(): void;
1034
+ } & {
1035
+ readonly regionTooLarge: boolean;
1036
+ readonly regionTooLargeReason: string;
1037
+ } & {
1038
+ readonly featureDensityStatsReadyAndRegionNotTooLarge: boolean;
1039
+ regionCannotBeRenderedText(_region: import("@jbrowse/core/util").Region): "" | "Force load to see features";
1040
+ regionCannotBeRendered(_region: import("@jbrowse/core/util").Region): import("react/jsx-runtime").JSX.Element | null;
1041
+ } & {
1042
+ mouseoverExtraInformation: string | undefined;
1043
+ featureIdUnderMouse: undefined | string;
1044
+ subfeatureIdUnderMouse: undefined | string;
1045
+ contextMenuFeature: undefined | import("@jbrowse/core/util").Feature;
1046
+ } & {
1047
+ readonly DisplayMessageComponent: undefined | React.FC<any>;
1048
+ readonly blockType: "staticBlocks" | "dynamicBlocks";
1049
+ readonly blockDefinitions: import("@jbrowse/core/util/blockTypes").BlockSet;
1050
+ } & {
1051
+ readonly renderDelay: number;
1052
+ readonly TooltipComponent: import("@jbrowse/core/util").AnyReactComponentType;
1053
+ legendItems(_theme?: import("@mui/material").Theme): import("@jbrowse/plugin-linear-genome-view").LegendItem[];
1054
+ svgLegendWidth(theme?: import("@mui/material").Theme): number;
1055
+ readonly selectedFeatureId: string | undefined;
1056
+ readonly featureWidgetType: {
1057
+ type: string;
1058
+ id: string;
1059
+ };
1060
+ } & {
1061
+ readonly showTooltipsEnabled: boolean;
1062
+ readonly features: import("@jbrowse/core/util/compositeMap").default<string, import("@jbrowse/core/util").Feature>;
1063
+ readonly featureUnderMouse: import("@jbrowse/core/util").Feature | undefined;
1064
+ getFeatureById(featureId: string, parentFeatureId?: string): import("@jbrowse/core/util").Feature | undefined;
1065
+ readonly layoutFeatures: import("@jbrowse/core/util/compositeMap").default<string, import("@jbrowse/plugin-linear-genome-view/src/BaseLinearDisplay/types.ts").LayoutRecord>;
1066
+ getFeatureOverlapping(blockKey: string, x: number, y: number): string | undefined;
1067
+ getFeatureByID(blockKey: string, id: string): import("@jbrowse/plugin-linear-genome-view/src/BaseLinearDisplay/types.ts").LayoutRecord | undefined;
1068
+ searchFeatureByID(id: string): import("@jbrowse/plugin-linear-genome-view/src/BaseLinearDisplay/types.ts").LayoutRecord | undefined;
1069
+ readonly floatingLabelData: Map<string, import("@jbrowse/plugin-linear-genome-view/src/BaseLinearDisplay/components/util.ts").FeatureLabelData>;
1070
+ } & {
1071
+ addBlock(key: string, block: import("@jbrowse/core/util/blockTypes").BaseBlock): void;
1072
+ deleteBlock(key: string): void;
1073
+ selectFeature(feature: import("@jbrowse/core/util").Feature): void;
1074
+ navToFeature(feature: import("@jbrowse/core/util").Feature): void;
1075
+ clearFeatureSelection(): void;
1076
+ setFeatureIdUnderMouse(feature?: string): void;
1077
+ setSubfeatureIdUnderMouse(subfeatureId?: string): void;
1078
+ setContextMenuFeature(feature?: import("@jbrowse/core/util").Feature): void;
1079
+ setMouseoverExtraInformation(extra?: string): void;
1080
+ setShowLegend(s: boolean): void;
1081
+ setShowTooltips(arg: boolean): void;
1082
+ } & {
1083
+ reload(): Promise<void>;
1084
+ } & {
1085
+ selectFeatureById: (featureId: string, parentFeatureId?: string | undefined, topLevelFeatureId?: string | undefined) => Promise<void>;
1086
+ setContextMenuFeatureById: (featureId: string, parentFeatureId?: string | undefined, topLevelFeatureId?: string | undefined) => Promise<void>;
1087
+ }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
1088
+ onMouseMove(_: unknown, featureId?: string): void;
1089
+ onMouseLeave(_: unknown): void;
1090
+ onContextMenu(_: unknown): void;
1091
+ };
226
1092
  renderProps(): any;
227
1093
  } & {
228
1094
  renderSvg(opts: import("@jbrowse/plugin-linear-genome-view").ExportSvgDisplayOptions): Promise<import("react/jsx-runtime").JSX.Element>;
@@ -233,18 +1099,19 @@ export default function SharedModelF(pluginManager: PluginManager, configSchema:
233
1099
  currStatsBpPerPx: number;
234
1100
  scoreMin: number;
235
1101
  scoreMax: number;
1102
+ statsRegion?: string;
236
1103
  } | undefined;
237
- statsFetchInProgress: undefined | string;
1104
+ statsFetchInProgress: undefined | import("@jbrowse/core/util").StopToken;
238
1105
  } & {
239
1106
  updateQuantitativeStats(stats: {
240
1107
  currStatsBpPerPx: number;
241
1108
  scoreMin: number;
242
1109
  scoreMax: number;
243
- }): void;
1110
+ }, statsRegion?: string): void;
244
1111
  setColor(color?: string): void;
245
1112
  setPosColor(color?: string): void;
246
1113
  setNegColor(color?: string): void;
247
- setStatsLoading(arg?: string): void;
1114
+ setStatsLoading(arg?: import("@jbrowse/core/util").StopToken): void;
248
1115
  selectFeature(feature: import("@jbrowse/core/util").Feature): void;
249
1116
  setResolution(res: number): void;
250
1117
  setFill(fill: number): void;
@@ -266,17 +1133,7 @@ export default function SharedModelF(pluginManager: PluginManager, configSchema:
266
1133
  readonly minScore: number;
267
1134
  } & {
268
1135
  readonly adapterCapabilities: string[];
269
- readonly rendererConfig: {
270
- [x: string]: any;
271
- } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
272
- setSubschema(slotName: string, data: Record<string, unknown>): Record<string, unknown> | ({
273
- [x: string]: any;
274
- } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
275
- setSubschema(slotName: string, data: Record<string, unknown>): Record<string, unknown> | ({
276
- [x: string]: any;
277
- } & import("mobx-state-tree/dist/internal").NonEmptyObject & any & import("mobx-state-tree").IStateTreeNode<AnyConfigurationSchemaType>);
278
- } & import("mobx-state-tree").IStateTreeNode<AnyConfigurationSchemaType>);
279
- } & import("mobx-state-tree").IStateTreeNode<AnyConfigurationSchemaType>;
1136
+ readonly rendererConfig: any;
280
1137
  readonly autoscaleType: string;
281
1138
  } & {
282
1139
  readonly domain: number[] | undefined;
@@ -289,6 +1146,7 @@ export default function SharedModelF(pluginManager: PluginManager, configSchema:
289
1146
  currStatsBpPerPx: number;
290
1147
  scoreMin: number;
291
1148
  scoreMax: number;
1149
+ statsRegion?: string;
292
1150
  } | undefined;
293
1151
  autoscaleType: string;
294
1152
  scaleType: string;
@@ -340,10 +1198,10 @@ export default function SharedModelF(pluginManager: PluginManager, configSchema:
340
1198
  } | undefined;
341
1199
  } & {
342
1200
  renderProps(): any;
343
- readonly fillSetting: 1 | 2 | 0;
1201
+ readonly fillSetting: 0 | 1 | 2;
344
1202
  readonly quantitativeStatsReady: boolean;
345
1203
  } & {
346
- trackMenuItems(): (import("@jbrowse/core/ui").MenuDivider | import("@jbrowse/core/ui").MenuSubHeader | import("@jbrowse/core/ui").NormalMenuItem | import("@jbrowse/core/ui").CheckboxMenuItem | import("@jbrowse/core/ui").RadioMenuItem | import("@jbrowse/core/ui").SubMenuItem | {
1204
+ wiggleBaseTrackMenuItems(): (import("@jbrowse/core/ui").MenuDivider | import("@jbrowse/core/ui").MenuSubHeader | import("@jbrowse/core/ui").NormalMenuItem | import("@jbrowse/core/ui").CheckboxMenuItem | import("@jbrowse/core/ui").RadioMenuItem | import("@jbrowse/core/ui").SubMenuItem | {
347
1205
  label: string;
348
1206
  icon: import("@mui/material/OverridableComponent").OverridableComponent<import("@mui/material").SvgIconTypeMap<{}, "svg">> & {
349
1207
  muiName: string;
@@ -369,16 +1227,79 @@ export default function SharedModelF(pluginManager: PluginManager, configSchema:
369
1227
  onClick: () => void;
370
1228
  subMenu?: undefined;
371
1229
  })[];
1230
+ })[];
1231
+ wiggleOnlyTrackMenuItems(): ({
1232
+ label: string;
1233
+ type: string;
1234
+ checked: boolean;
1235
+ onClick: () => void;
1236
+ subMenu?: undefined;
1237
+ icon?: undefined;
1238
+ } | {
1239
+ label: string;
1240
+ subMenu: {
1241
+ label: string;
1242
+ type: string;
1243
+ checked: boolean;
1244
+ onClick: () => void;
1245
+ }[];
372
1246
  type?: undefined;
373
1247
  checked?: undefined;
374
1248
  onClick?: undefined;
1249
+ icon?: undefined;
1250
+ } | {
1251
+ label: string;
1252
+ icon: import("@mui/material/OverridableComponent").OverridableComponent<import("@mui/material").SvgIconTypeMap<{}, "svg">> & {
1253
+ muiName: string;
1254
+ };
1255
+ onClick: () => void;
1256
+ type?: undefined;
1257
+ checked?: undefined;
1258
+ subMenu?: undefined;
1259
+ } | {
1260
+ type: string;
1261
+ icon: import("@mui/material/OverridableComponent").OverridableComponent<import("@mui/material").SvgIconTypeMap<{}, "svg">> & {
1262
+ muiName: string;
1263
+ };
1264
+ label: string;
1265
+ checked: boolean;
1266
+ onClick: () => void;
1267
+ subMenu?: undefined;
1268
+ })[];
1269
+ } & {
1270
+ trackMenuItems(): (import("@jbrowse/core/ui").MenuDivider | import("@jbrowse/core/ui").MenuSubHeader | import("@jbrowse/core/ui").NormalMenuItem | import("@jbrowse/core/ui").CheckboxMenuItem | import("@jbrowse/core/ui").RadioMenuItem | import("@jbrowse/core/ui").SubMenuItem | {
1271
+ label: string;
1272
+ icon: import("@mui/material/OverridableComponent").OverridableComponent<import("@mui/material").SvgIconTypeMap<{}, "svg">> & {
1273
+ muiName: string;
1274
+ };
1275
+ subMenu: ({
1276
+ label: string;
1277
+ subMenu: {
1278
+ label: string;
1279
+ onClick: () => void;
1280
+ }[];
1281
+ onClick?: undefined;
1282
+ } | {
1283
+ label: string;
1284
+ subMenu: {
1285
+ label: string;
1286
+ type: string;
1287
+ checked: boolean;
1288
+ onClick: () => void;
1289
+ }[];
1290
+ onClick?: undefined;
1291
+ } | {
1292
+ label: string;
1293
+ onClick: () => void;
1294
+ subMenu?: undefined;
1295
+ })[];
375
1296
  } | {
376
1297
  label: string;
377
1298
  type: string;
378
1299
  checked: boolean;
379
1300
  onClick: () => void;
380
- icon?: undefined;
381
1301
  subMenu?: undefined;
1302
+ icon?: undefined;
382
1303
  } | {
383
1304
  label: string;
384
1305
  subMenu: {
@@ -387,19 +1308,19 @@ export default function SharedModelF(pluginManager: PluginManager, configSchema:
387
1308
  checked: boolean;
388
1309
  onClick: () => void;
389
1310
  }[];
390
- icon?: undefined;
391
1311
  type?: undefined;
392
1312
  checked?: undefined;
393
1313
  onClick?: undefined;
1314
+ icon?: undefined;
394
1315
  } | {
395
1316
  label: string;
396
1317
  icon: import("@mui/material/OverridableComponent").OverridableComponent<import("@mui/material").SvgIconTypeMap<{}, "svg">> & {
397
1318
  muiName: string;
398
1319
  };
399
1320
  onClick: () => void;
400
- subMenu?: undefined;
401
1321
  type?: undefined;
402
1322
  checked?: undefined;
1323
+ subMenu?: undefined;
403
1324
  } | {
404
1325
  type: string;
405
1326
  icon: import("@mui/material/OverridableComponent").OverridableComponent<import("@mui/material").SvgIconTypeMap<{}, "svg">> & {
@@ -409,6 +1330,17 @@ export default function SharedModelF(pluginManager: PluginManager, configSchema:
409
1330
  checked: boolean;
410
1331
  onClick: () => void;
411
1332
  subMenu?: undefined;
1333
+ } | {
1334
+ label: string;
1335
+ icon: import("@mui/material/OverridableComponent").OverridableComponent<import("@mui/material").SvgIconTypeMap<{}, "svg">> & {
1336
+ muiName: string;
1337
+ };
1338
+ subMenu: {
1339
+ label: string;
1340
+ type: string;
1341
+ checked: boolean;
1342
+ onClick: () => void;
1343
+ }[];
412
1344
  })[];
413
1345
  } & {
414
1346
  afterAttach(): void;
@@ -424,4 +1356,38 @@ export default function SharedModelF(pluginManager: PluginManager, configSchema:
424
1356
  } & {
425
1357
  trackMenuItems(): import("@jbrowse/core/ui").MenuItem[];
426
1358
  adapterProps(): any;
427
- }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>;
1359
+ }, import("@jbrowse/mobx-state-tree")._NotCustomized, {
1360
+ id: string;
1361
+ type: "LinearWiggleDisplay";
1362
+ rpcDriverName: string | undefined;
1363
+ heightPreConfig: number | undefined;
1364
+ userBpPerPxLimit: number | undefined;
1365
+ userByteSizeLimit: number | undefined;
1366
+ blockState: import("mobx").IKeyValueMap<import("@jbrowse/mobx-state-tree").ModelSnapshotType<{
1367
+ key: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
1368
+ region: import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/core/util").Region, import("@jbrowse/core/util").Region, import("@jbrowse/core/util").Region>;
1369
+ reloadFlag: import("@jbrowse/mobx-state-tree").IType<number | undefined, number, number>;
1370
+ isLeftEndOfDisplayedRegion: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
1371
+ isRightEndOfDisplayedRegion: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
1372
+ }>>;
1373
+ configuration: import("@jbrowse/mobx-state-tree").ModelSnapshotType<Record<string, any>>;
1374
+ showLegend: boolean | undefined;
1375
+ showTooltips: boolean | undefined;
1376
+ selectedRendering: string;
1377
+ resolution: number;
1378
+ fill: boolean | undefined;
1379
+ minSize: number | undefined;
1380
+ color: string | undefined;
1381
+ posColor: string | undefined;
1382
+ negColor: string | undefined;
1383
+ summaryScoreMode: string | undefined;
1384
+ rendererTypeNameState: string | undefined;
1385
+ scale: string | undefined;
1386
+ autoscale: string | undefined;
1387
+ displayCrossHatches: boolean | undefined;
1388
+ constraints: import("@jbrowse/mobx-state-tree").ModelSnapshotType<{
1389
+ max: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<number>>;
1390
+ min: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<number>>;
1391
+ }>;
1392
+ invertedSetting: boolean | undefined;
1393
+ } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & import("@jbrowse/mobx-state-tree")._NotCustomized>;