@jbrowse/plugin-gccontent 2.4.2 → 2.5.0

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (11) hide show
  1. package/dist/GCContentAdapter/GCContentAdapter.js +1 -1
  2. package/dist/GCContentAdapter/GCContentAdapter.js.map +1 -1
  3. package/dist/GCContentAdapter/configSchema.d.ts +9 -1
  4. package/dist/LinearGCContentDisplay/config.d.ts +1 -1
  5. package/dist/LinearGCContentDisplay/stateModel.d.ts +34 -11
  6. package/esm/GCContentAdapter/GCContentAdapter.js +2 -1
  7. package/esm/GCContentAdapter/GCContentAdapter.js.map +1 -1
  8. package/esm/GCContentAdapter/configSchema.d.ts +9 -1
  9. package/esm/LinearGCContentDisplay/config.d.ts +1 -1
  10. package/esm/LinearGCContentDisplay/stateModel.d.ts +34 -11
  11. package/package.json +2 -2
package/dist/GCContentAdapter/GCContentAdapter.js CHANGED
@@ -85,6 +85,6 @@ class default_1 extends BaseAdapter_1.BaseFeatureDataAdapter {
85
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  */
86
86
  freeResources( /* { region } */) { }
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  }
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- exports.default = default_1;
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  default_1.capabilities = ['hasLocalStats'];
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+ exports.default = default_1;
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  //# sourceMappingURL=GCContentAdapter.js.map
package/dist/GCContentAdapter/GCContentAdapter.js.map CHANGED
@@ -1 +1 @@
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1
+ {"version":3,"file":"GCContentAdapter.js","sourceRoot":"","sources":["../../src/GCContentAdapter/GCContentAdapter.ts"],"names":[],"mappings":";;AAAA,yEAGgD;AAChD,+BAAqC;AACrC,kDAA0D;AAC1D,6CAAmE;AACnE,8CAAwC;AAExC,eAAqB,SAAQ,oCAAsB;IAAnD;;QACU,eAAU,GAAG,IAAI,CAAA;QAEjB,gBAAW,GAAG,IAAI,CAAA;QAElB,WAAM,GAAG,SAAS,CAAA;IAqF5B,CAAC;IAjFQ,KAAK,CAAC,SAAS;;QACpB,MAAM,OAAO,GAAG,MAAM,CAAA,MAAA,IAAI,CAAC,aAAa,qDAAG,IAAI,CAAC,OAAO,CAAC,iBAAiB,CAAC,CAAC,CAAA,CAAA;QAC3E,IAAI,CAAC,OAAO,EAAE;YACZ,MAAM,IAAI,KAAK,CAAC,0BAA0B,CAAC,CAAA;SAC5C;QACD,OAAO,OAAO,CAAC,WAAqC,CAAA;IACtD,CAAC;IAEM,KAAK,CAAC,WAAW;QACtB,MAAM,OAAO,GAAG,MAAM,IAAI,CAAC,SAAS,EAAE,CAAA;QACtC,OAAO,OAAO,CAAC,WAAW,EAAE,CAAA;IAC9B,CAAC;IAEM,WAAW,CAAC,KAAa,EAAE,IAAiB;QACjD,OAAO,IAAA,uBAAgB,EAAU,KAAK,EAAC,QAAQ,EAAC,EAAE;;YAChD,MAAM,eAAe,GAAG,MAAM,IAAI,CAAC,SAAS,EAAE,CAAA;YAC9C,MAAM,EAAE,GAAG,IAAI,CAAC,UAAU,KAAK,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,IAAI,CAAC,UAAU,GAAG,CAAC,CAAA,CAAC,uBAAuB;YAClF,MAAM,CAAC,GAAG,IAAI,CAAC,UAAU,KAAK,CAAC,CAAA;YAE/B,IAAI,EAAE,KAAK,EAAE,UAAU,EAAE,GAAG,EAAE,QAAQ,EAAE,GAAG,KAAK,CAAA;YAChD,UAAU,GAAG,IAAI,CAAC,GAAG,CAAC,CAAC,EAAE,UAAU,GAAG,EAAE,CAAC,CAAA;YACzC,QAAQ,IAAI,EAAE,CAAA;YAEd,IAAI,QAAQ,GAAG,CAAC,IAAI,UAAU,GAAG,QAAQ,EAAE;gBACzC,QAAQ,CAAC,QAAQ,EAAE,CAAA;gBACnB,OAAM;aACP;YAED,MAAM,GAAG,GAAG,eAAe,CAAC,WAAW,CACrC;gBACE,GAAG,KAAK;gBACR,KAAK,EAAE,UAAU;gBACjB,GAAG,EAAE,QAAQ;aACd,EACD,IAAI,CACL,CAAA;YACD,MAAM,KAAK,GAAG,MAAM,IAAA,qBAAc,EAAC,GAAG,CAAC,IAAI,CAAC,IAAA,mBAAO,GAAE,CAAC,CAAC,CAAA;YACvD,MAAM,QAAQ,GAAG,CAAA,MAAA,KAAK,CAAC,CAAC,CAAC,0CAAE,GAAG,CAAC,KAAK,CAAC,KAAI,EAAE,CAAA;YAE3C,KAAK,IAAI,CAAC,GAAG,EAAE,EAAE,CAAC,GAAG,QAAQ,CAAC,MAAM,GAAG,EAAE,EAAE,CAAC,IAAI,IAAI,CAAC,WAAW,EAAE;gBAChE,MAAM,CAAC,GAAG,CAAC,CAAC,CAAC,CAAC,QAAQ,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,QAAQ,CAAC,KAAK,CAAC,CAAC,GAAG,EAAE,EAAE,CAAC,GAAG,EAAE,CAAC,CAAA;gBAC1D,IAAI,EAAE,GAAG,CAAC,CAAA;gBACV,IAAI,EAAE,GAAG,CAAC,CAAA;gBACV,IAAI,GAAG,GAAG,CAAC,CAAA;gBACX,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,CAAC,CAAC,MAAM,EAAE,CAAC,EAAE,EAAE;oBACjC,IAAI,CAAC,CAAC,CAAC,CAAC,KAAK,GAAG,IAAI,CAAC,CAAC,CAAC,CAAC,KAAK,GAAG,EAAE;wBAChC,EAAE,EAAE,CAAA;qBACL;yBAAM,IAAI,CAAC,CAAC,CAAC,CAAC,KAAK,GAAG,IAAI,CAAC,CAAC,CAAC,CAAC,KAAK,GAAG,EAAE;wBACvC,EAAE,EAAE,CAAA;qBACL;oBACD,IAAI,CAAC,CAAC,CAAC,CAAC,KAAK,GAAG,EAAE;wBAChB,GAAG,EAAE,CAAA;qBACN;iBACF;gBACD,MAAM,GAAG,GAAG,UAAU,CAAA;gBACtB,IAAI,KAAK,CAAA;gBACT,IAAI,IAAI,CAAC,MAAM,KAAK,SAAS,EAAE;oBAC7B,KAAK,GAAG,CAAC,EAAE,GAAG,EAAE,CAAC,GAAG,CAAC,GAAG,IAAI,CAAC,CAAC,CAAA;iBAC/B;qBAAM,IAAI,IAAI,CAAC,MAAM,KAAK,MAAM,EAAE;oBACjC,KAAK,GAAG,CAAC,EAAE,GAAG,EAAE,CAAC,GAAG,CAAC,EAAE,GAAG,EAAE,IAAI,CAAC,CAAC,CAAA;iBACnC;gBAED,QAAQ,CAAC,IAAI,CACX,IAAI,oBAAa,CAAC;oBAChB,QAAQ,EAAE,GAAG,IAAI,CAAC,EAAE,IAAI,GAAG,GAAG,CAAC,EAAE;oBACjC,KAAK,EAAE,GAAG,GAAG,CAAC;oBACd,GAAG,EAAE,GAAG,GAAG,CAAC,GAAG,IAAI,CAAC,WAAW;oBAC/B,KAAK;iBACN,CAAC,CACH,CAAA;aACF;YACD,QAAQ,CAAC,QAAQ,EAAE,CAAA;QACrB,CAAC,CAAC,CAAA;IACJ,CAAC;IAED;;;;OAIG;IACI,aAAa,EAAC,gBAAgB,IAAG,CAAC;;AAlF3B,sBAAY,GAAG,CAAC,eAAe,CAAC,AAApB,CAAoB"}
package/dist/GCContentAdapter/configSchema.d.ts CHANGED
@@ -1,3 +1,11 @@
1
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  import PluginManager from '@jbrowse/core/PluginManager';
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- declare const GCContentAdapterF: (pluginManager: PluginManager) => import("@jbrowse/core/configuration").AnyConfigurationSchemaType;
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+ declare const GCContentAdapterF: (pluginManager: PluginManager) => import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
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+ /**
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+ * #slot
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+ */
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+ sequenceAdapter: {
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+ type: string;
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+ defaultValue: null;
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+ };
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+ }, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, undefined>>;
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  export default GCContentAdapterF;
package/dist/LinearGCContentDisplay/config.d.ts CHANGED
@@ -2,4 +2,4 @@ import PluginManager from '@jbrowse/core/PluginManager';
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  /**
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  * #config LinearGCContentDisplay
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  */
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- export default function WiggleConfigFactory(pluginManager: PluginManager): import("@jbrowse/core/configuration").AnyConfigurationSchemaType;
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+ export default function WiggleConfigFactory(pluginManager: PluginManager): import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{}, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<import("@jbrowse/core/configuration").AnyConfigurationSchemaType, undefined>>;
package/dist/LinearGCContentDisplay/stateModel.d.ts CHANGED
@@ -59,9 +59,32 @@ export default function stateModelFactory(pluginManager: PluginManager, configSc
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  }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
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  userBpPerPxLimit: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
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  userByteSizeLimit: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
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+ configuration: import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
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+ maxFeatureScreenDensity: {
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+ type: string;
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+ description: string;
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+ defaultValue: number;
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+ };
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+ fetchSizeLimit: {
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+ type: string;
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+ defaultValue: number;
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+ description: string;
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+ };
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+ height: {
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+ type: string;
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+ defaultValue: number;
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+ description: string;
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+ };
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+ mouseover: {
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+ type: string;
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+ description: string;
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+ defaultValue: string;
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+ contextVariable: string[];
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+ };
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+ }, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, "displayId">>;
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  } & {
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  type: import("mobx-state-tree").ISimpleType<"LinearWiggleDisplay">;
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- configuration: import("mobx-state-tree").ITypeUnion<any, any, any>;
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+ configuration: AnyConfigurationSchemaType;
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  selectedRendering: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
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  resolution: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<number>, [undefined]>;
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  fill: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<boolean>>;
@@ -141,8 +164,8 @@ export default function stateModelFactory(pluginManager: PluginManager, configSc
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  message: string;
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  featureIdUnderMouse: string | undefined;
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  contextMenuFeature: import("@jbrowse/core/util").Feature | undefined;
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- estimatedRegionsStatsP: Promise<import("@jbrowse/core/data_adapters/BaseAdapter").Stats> | undefined;
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- estimatedRegionsStats: import("@jbrowse/core/data_adapters/BaseAdapter").Stats | undefined;
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+ featureDensityStatsP: Promise<import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats> | undefined;
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+ featureDensityStats: import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats | undefined;
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  } & {
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  readonly height: number;
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  readonly blockType: "dynamicBlocks" | "staticBlocks";
@@ -161,26 +184,26 @@ export default function stateModelFactory(pluginManager: PluginManager, configSc
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  readonly currentBytesRequested: number;
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  readonly currentFeatureScreenDensity: number;
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  readonly maxFeatureScreenDensity: any;
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- readonly estimatedStatsReady: boolean;
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+ readonly featureDensityStatsReady: boolean;
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  readonly maxAllowableBytes: number;
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  } & {
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  setMessage(message: string): void;
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  } & {
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  afterAttach(): void;
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- estimateRegionsStats(): Promise<import("@jbrowse/core/data_adapters/BaseAdapter").Stats>;
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- setRegionsStatsP(arg: any): void;
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- setRegionsStats(estimatedRegionsStats?: import("@jbrowse/core/data_adapters/BaseAdapter").Stats | undefined): void;
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- clearRegionsStats(): void;
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+ getFeatureDensityStats(): Promise<import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats>;
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+ setFeatureDensityStatsP(arg: any): void;
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+ setFeatureDensityStats(featureDensityStats?: import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats | undefined): void;
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+ clearFeatureDensityStats(): void;
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  setHeight(displayHeight: number): number;
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  resizeHeight(distance: number): number;
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  setScrollTop(scrollTop: number): void;
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- updateStatsLimit(stats?: import("@jbrowse/core/data_adapters/BaseAdapter").Stats | undefined): void;
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+ setFeatureDensityStatsLimit(stats?: import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats | undefined): void;
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  addBlock(key: string, block: import("@jbrowse/core/util/blockTypes").BaseBlock): void;
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  setCurrBpPerPx(n: number): void;
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  deleteBlock(key: string): void;
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  selectFeature(feature: import("@jbrowse/core/util").Feature): void;
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  clearFeatureSelection(): void;
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- setFeatureIdUnderMouse(feature: string | undefined): void;
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+ setFeatureIdUnderMouse(feature?: string | undefined): void;
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  reload(): void;
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  setContextMenuFeature(feature?: import("@jbrowse/core/util").Feature | undefined): void;
186
209
  } & {
@@ -209,7 +232,7 @@ export default function stateModelFactory(pluginManager: PluginManager, configSc
209
232
  } | undefined;
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  statsFetchInProgress: AbortController | undefined;
211
234
  } & {
212
- updateStats(stats: {
235
+ updateQuantitativeStats(stats: {
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  scoreMin: number;
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  scoreMax: number;
215
238
  }): void;
package/esm/GCContentAdapter/GCContentAdapter.js CHANGED
@@ -3,7 +3,7 @@ import { firstValueFrom } from 'rxjs';
3
3
  import { ObservableCreate } from '@jbrowse/core/util/rxjs';
4
4
  import { SimpleFeature } from '@jbrowse/core/util';
5
5
  import { toArray } from 'rxjs/operators';
6
- export default class default_1 extends BaseFeatureDataAdapter {
6
+ class default_1 extends BaseFeatureDataAdapter {
7
7
  constructor() {
8
8
  super(...arguments);
9
9
  this.windowSize = 1000;
@@ -84,4 +84,5 @@ export default class default_1 extends BaseFeatureDataAdapter {
84
84
  freeResources( /* { region } */) { }
85
85
  }
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  default_1.capabilities = ['hasLocalStats'];
87
+ export default default_1;
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  //# sourceMappingURL=GCContentAdapter.js.map
package/esm/GCContentAdapter/GCContentAdapter.js.map CHANGED
@@ -1 +1 @@
1
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1
+ {"version":3,"file":"GCContentAdapter.js","sourceRoot":"","sources":["../../src/GCContentAdapter/GCContentAdapter.ts"],"names":[],"mappings":"AAAA,OAAO,EACL,sBAAsB,GAEvB,MAAM,yCAAyC,CAAA;AAChD,OAAO,EAAE,cAAc,EAAE,MAAM,MAAM,CAAA;AACrC,OAAO,EAAE,gBAAgB,EAAE,MAAM,yBAAyB,CAAA;AAC1D,OAAO,EAAE,aAAa,EAAmB,MAAM,oBAAoB,CAAA;AACnE,OAAO,EAAE,OAAO,EAAE,MAAM,gBAAgB,CAAA;AAExC,eAAqB,SAAQ,sBAAsB;IAAnD;;QACU,eAAU,GAAG,IAAI,CAAA;QAEjB,gBAAW,GAAG,IAAI,CAAA;QAElB,WAAM,GAAG,SAAS,CAAA;IAqF5B,CAAC;IAjFQ,KAAK,CAAC,SAAS;;QACpB,MAAM,OAAO,GAAG,MAAM,CAAA,MAAA,IAAI,CAAC,aAAa,qDAAG,IAAI,CAAC,OAAO,CAAC,iBAAiB,CAAC,CAAC,CAAA,CAAA;QAC3E,IAAI,CAAC,OAAO,EAAE;YACZ,MAAM,IAAI,KAAK,CAAC,0BAA0B,CAAC,CAAA;SAC5C;QACD,OAAO,OAAO,CAAC,WAAqC,CAAA;IACtD,CAAC;IAEM,KAAK,CAAC,WAAW;QACtB,MAAM,OAAO,GAAG,MAAM,IAAI,CAAC,SAAS,EAAE,CAAA;QACtC,OAAO,OAAO,CAAC,WAAW,EAAE,CAAA;IAC9B,CAAC;IAEM,WAAW,CAAC,KAAa,EAAE,IAAiB;QACjD,OAAO,gBAAgB,CAAU,KAAK,EAAC,QAAQ,EAAC,EAAE;;YAChD,MAAM,eAAe,GAAG,MAAM,IAAI,CAAC,SAAS,EAAE,CAAA;YAC9C,MAAM,EAAE,GAAG,IAAI,CAAC,UAAU,KAAK,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,IAAI,CAAC,UAAU,GAAG,CAAC,CAAA,CAAC,uBAAuB;YAClF,MAAM,CAAC,GAAG,IAAI,CAAC,UAAU,KAAK,CAAC,CAAA;YAE/B,IAAI,EAAE,KAAK,EAAE,UAAU,EAAE,GAAG,EAAE,QAAQ,EAAE,GAAG,KAAK,CAAA;YAChD,UAAU,GAAG,IAAI,CAAC,GAAG,CAAC,CAAC,EAAE,UAAU,GAAG,EAAE,CAAC,CAAA;YACzC,QAAQ,IAAI,EAAE,CAAA;YAEd,IAAI,QAAQ,GAAG,CAAC,IAAI,UAAU,GAAG,QAAQ,EAAE;gBACzC,QAAQ,CAAC,QAAQ,EAAE,CAAA;gBACnB,OAAM;aACP;YAED,MAAM,GAAG,GAAG,eAAe,CAAC,WAAW,CACrC;gBACE,GAAG,KAAK;gBACR,KAAK,EAAE,UAAU;gBACjB,GAAG,EAAE,QAAQ;aACd,EACD,IAAI,CACL,CAAA;YACD,MAAM,KAAK,GAAG,MAAM,cAAc,CAAC,GAAG,CAAC,IAAI,CAAC,OAAO,EAAE,CAAC,CAAC,CAAA;YACvD,MAAM,QAAQ,GAAG,CAAA,MAAA,KAAK,CAAC,CAAC,CAAC,0CAAE,GAAG,CAAC,KAAK,CAAC,KAAI,EAAE,CAAA;YAE3C,KAAK,IAAI,CAAC,GAAG,EAAE,EAAE,CAAC,GAAG,QAAQ,CAAC,MAAM,GAAG,EAAE,EAAE,CAAC,IAAI,IAAI,CAAC,WAAW,EAAE;gBAChE,MAAM,CAAC,GAAG,CAAC,CAAC,CAAC,CAAC,QAAQ,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,QAAQ,CAAC,KAAK,CAAC,CAAC,GAAG,EAAE,EAAE,CAAC,GAAG,EAAE,CAAC,CAAA;gBAC1D,IAAI,EAAE,GAAG,CAAC,CAAA;gBACV,IAAI,EAAE,GAAG,CAAC,CAAA;gBACV,IAAI,GAAG,GAAG,CAAC,CAAA;gBACX,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,CAAC,CAAC,MAAM,EAAE,CAAC,EAAE,EAAE;oBACjC,IAAI,CAAC,CAAC,CAAC,CAAC,KAAK,GAAG,IAAI,CAAC,CAAC,CAAC,CAAC,KAAK,GAAG,EAAE;wBAChC,EAAE,EAAE,CAAA;qBACL;yBAAM,IAAI,CAAC,CAAC,CAAC,CAAC,KAAK,GAAG,IAAI,CAAC,CAAC,CAAC,CAAC,KAAK,GAAG,EAAE;wBACvC,EAAE,EAAE,CAAA;qBACL;oBACD,IAAI,CAAC,CAAC,CAAC,CAAC,KAAK,GAAG,EAAE;wBAChB,GAAG,EAAE,CAAA;qBACN;iBACF;gBACD,MAAM,GAAG,GAAG,UAAU,CAAA;gBACtB,IAAI,KAAK,CAAA;gBACT,IAAI,IAAI,CAAC,MAAM,KAAK,SAAS,EAAE;oBAC7B,KAAK,GAAG,CAAC,EAAE,GAAG,EAAE,CAAC,GAAG,CAAC,GAAG,IAAI,CAAC,CAAC,CAAA;iBAC/B;qBAAM,IAAI,IAAI,CAAC,MAAM,KAAK,MAAM,EAAE;oBACjC,KAAK,GAAG,CAAC,EAAE,GAAG,EAAE,CAAC,GAAG,CAAC,EAAE,GAAG,EAAE,IAAI,CAAC,CAAC,CAAA;iBACnC;gBAED,QAAQ,CAAC,IAAI,CACX,IAAI,aAAa,CAAC;oBAChB,QAAQ,EAAE,GAAG,IAAI,CAAC,EAAE,IAAI,GAAG,GAAG,CAAC,EAAE;oBACjC,KAAK,EAAE,GAAG,GAAG,CAAC;oBACd,GAAG,EAAE,GAAG,GAAG,CAAC,GAAG,IAAI,CAAC,WAAW;oBAC/B,KAAK;iBACN,CAAC,CACH,CAAA;aACF;YACD,QAAQ,CAAC,QAAQ,EAAE,CAAA;QACrB,CAAC,CAAC,CAAA;IACJ,CAAC;IAED;;;;OAIG;IACI,aAAa,EAAC,gBAAgB,IAAG,CAAC;;AAlF3B,sBAAY,GAAG,CAAC,eAAe,CAAC,AAApB,CAAoB"}
package/esm/GCContentAdapter/configSchema.d.ts CHANGED
@@ -1,3 +1,11 @@
1
1
  import PluginManager from '@jbrowse/core/PluginManager';
2
- declare const GCContentAdapterF: (pluginManager: PluginManager) => import("@jbrowse/core/configuration").AnyConfigurationSchemaType;
2
+ declare const GCContentAdapterF: (pluginManager: PluginManager) => import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
3
+ /**
4
+ * #slot
5
+ */
6
+ sequenceAdapter: {
7
+ type: string;
8
+ defaultValue: null;
9
+ };
10
+ }, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, undefined>>;
3
11
  export default GCContentAdapterF;
package/esm/LinearGCContentDisplay/config.d.ts CHANGED
@@ -2,4 +2,4 @@ import PluginManager from '@jbrowse/core/PluginManager';
2
2
  /**
3
3
  * #config LinearGCContentDisplay
4
4
  */
5
- export default function WiggleConfigFactory(pluginManager: PluginManager): import("@jbrowse/core/configuration").AnyConfigurationSchemaType;
5
+ export default function WiggleConfigFactory(pluginManager: PluginManager): import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{}, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<import("@jbrowse/core/configuration").AnyConfigurationSchemaType, undefined>>;
package/esm/LinearGCContentDisplay/stateModel.d.ts CHANGED
@@ -59,9 +59,32 @@ export default function stateModelFactory(pluginManager: PluginManager, configSc
59
59
  }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
60
60
  userBpPerPxLimit: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
61
61
  userByteSizeLimit: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
62
+ configuration: import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
63
+ maxFeatureScreenDensity: {
64
+ type: string;
65
+ description: string;
66
+ defaultValue: number;
67
+ };
68
+ fetchSizeLimit: {
69
+ type: string;
70
+ defaultValue: number;
71
+ description: string;
72
+ };
73
+ height: {
74
+ type: string;
75
+ defaultValue: number;
76
+ description: string;
77
+ };
78
+ mouseover: {
79
+ type: string;
80
+ description: string;
81
+ defaultValue: string;
82
+ contextVariable: string[];
83
+ };
84
+ }, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, "displayId">>;
62
85
  } & {
63
86
  type: import("mobx-state-tree").ISimpleType<"LinearWiggleDisplay">;
64
- configuration: import("mobx-state-tree").ITypeUnion<any, any, any>;
87
+ configuration: AnyConfigurationSchemaType;
65
88
  selectedRendering: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
66
89
  resolution: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<number>, [undefined]>;
67
90
  fill: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<boolean>>;
@@ -141,8 +164,8 @@ export default function stateModelFactory(pluginManager: PluginManager, configSc
141
164
  message: string;
142
165
  featureIdUnderMouse: string | undefined;
143
166
  contextMenuFeature: import("@jbrowse/core/util").Feature | undefined;
144
- estimatedRegionsStatsP: Promise<import("@jbrowse/core/data_adapters/BaseAdapter").Stats> | undefined;
145
- estimatedRegionsStats: import("@jbrowse/core/data_adapters/BaseAdapter").Stats | undefined;
167
+ featureDensityStatsP: Promise<import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats> | undefined;
168
+ featureDensityStats: import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats | undefined;
146
169
  } & {
147
170
  readonly height: number;
148
171
  readonly blockType: "dynamicBlocks" | "staticBlocks";
@@ -161,26 +184,26 @@ export default function stateModelFactory(pluginManager: PluginManager, configSc
161
184
  readonly currentBytesRequested: number;
162
185
  readonly currentFeatureScreenDensity: number;
163
186
  readonly maxFeatureScreenDensity: any;
164
- readonly estimatedStatsReady: boolean;
187
+ readonly featureDensityStatsReady: boolean;
165
188
  readonly maxAllowableBytes: number;
166
189
  } & {
167
190
  setMessage(message: string): void;
168
191
  } & {
169
192
  afterAttach(): void;
170
- estimateRegionsStats(): Promise<import("@jbrowse/core/data_adapters/BaseAdapter").Stats>;
171
- setRegionsStatsP(arg: any): void;
172
- setRegionsStats(estimatedRegionsStats?: import("@jbrowse/core/data_adapters/BaseAdapter").Stats | undefined): void;
173
- clearRegionsStats(): void;
193
+ getFeatureDensityStats(): Promise<import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats>;
194
+ setFeatureDensityStatsP(arg: any): void;
195
+ setFeatureDensityStats(featureDensityStats?: import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats | undefined): void;
196
+ clearFeatureDensityStats(): void;
174
197
  setHeight(displayHeight: number): number;
175
198
  resizeHeight(distance: number): number;
176
199
  setScrollTop(scrollTop: number): void;
177
- updateStatsLimit(stats?: import("@jbrowse/core/data_adapters/BaseAdapter").Stats | undefined): void;
200
+ setFeatureDensityStatsLimit(stats?: import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats | undefined): void;
178
201
  addBlock(key: string, block: import("@jbrowse/core/util/blockTypes").BaseBlock): void;
179
202
  setCurrBpPerPx(n: number): void;
180
203
  deleteBlock(key: string): void;
181
204
  selectFeature(feature: import("@jbrowse/core/util").Feature): void;
182
205
  clearFeatureSelection(): void;
183
- setFeatureIdUnderMouse(feature: string | undefined): void;
206
+ setFeatureIdUnderMouse(feature?: string | undefined): void;
184
207
  reload(): void;
185
208
  setContextMenuFeature(feature?: import("@jbrowse/core/util").Feature | undefined): void;
186
209
  } & {
@@ -209,7 +232,7 @@ export default function stateModelFactory(pluginManager: PluginManager, configSc
209
232
  } | undefined;
210
233
  statsFetchInProgress: AbortController | undefined;
211
234
  } & {
212
- updateStats(stats: {
235
+ updateQuantitativeStats(stats: {
213
236
  scoreMin: number;
214
237
  scoreMax: number;
215
238
  }): void;
package/package.json CHANGED
@@ -1,6 +1,6 @@
1
1
  {
2
2
  "name": "@jbrowse/plugin-gccontent",
3
- "version": "2.4.2",
3
+ "version": "2.5.0",
4
4
  "description": "JBrowse 2 gccontent concepts",
5
5
  "keywords": [
6
6
  "jbrowse",
@@ -54,5 +54,5 @@
54
54
  "distModule": "esm/index.js",
55
55
  "srcModule": "src/index.ts",
56
56
  "module": "esm/index.js",
57
- "gitHead": "36e382a70e7d220343b873e7e6aba5c83e5342c8"
57
+ "gitHead": "d1ca073996d008f0fe9a52f7c1a47ae649dcfdaf"
58
58
  }