@jbrowse/plugin-gccontent 2.3.2 → 2.3.3
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/dist/GCContentAdapter/GCContentAdapter.js +4 -3
- package/dist/GCContentAdapter/GCContentAdapter.js.map +1 -1
- package/esm/GCContentAdapter/GCContentAdapter.js +2 -1
- package/esm/GCContentAdapter/GCContentAdapter.js.map +1 -1
- package/package.json +3 -3
- package/src/GCContentAdapter/GCContentAdapter.ts +2 -1
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@@ -1,7 +1,8 @@
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"use strict";
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Object.defineProperty(exports, "__esModule", { value: true });
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const BaseAdapter_1 = require("@jbrowse/core/data_adapters/BaseAdapter");
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const rxjs_1 = require("
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const rxjs_1 = require("rxjs");
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const rxjs_2 = require("@jbrowse/core/util/rxjs");
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const util_1 = require("@jbrowse/core/util");
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const operators_1 = require("rxjs/operators");
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class default_1 extends BaseAdapter_1.BaseFeatureDataAdapter {
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@@ -24,7 +25,7 @@ class default_1 extends BaseAdapter_1.BaseFeatureDataAdapter {
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return adapter.getRefNames();
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}
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getFeatures(query, opts) {
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return (0,
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return (0, rxjs_2.ObservableCreate)(async (observer) => {
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var _a;
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const sequenceAdapter = await this.configure();
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const hw = this.windowSize === 1 ? 1 : this.windowSize / 2; // Half the window size
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@@ -41,7 +42,7 @@ class default_1 extends BaseAdapter_1.BaseFeatureDataAdapter {
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start: queryStart,
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end: queryEnd,
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}, opts);
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const feats = await ret.pipe((0, operators_1.toArray)())
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const feats = await (0, rxjs_1.firstValueFrom)(ret.pipe((0, operators_1.toArray)()));
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const residues = ((_a = feats[0]) === null || _a === void 0 ? void 0 : _a.get('seq')) || '';
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for (let i = hw; i < residues.length - hw; i += this.windowDelta) {
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const r = f ? residues[i] : residues.slice(i - hw, i + hw);
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@@ -1 +1 @@
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-
{"version":3,"file":"GCContentAdapter.js","sourceRoot":"","sources":["../../src/GCContentAdapter/GCContentAdapter.ts"],"names":[],"mappings":";;AAAA,yEAGgD;AAChD,kDAA0D;AAC1D,6CAAmE;AACnE,8CAAwC;AAExC,eAAqB,SAAQ,oCAAsB;IAAnD;;QACU,eAAU,GAAG,IAAI,CAAA;QAEjB,gBAAW,GAAG,IAAI,CAAA;QAElB,WAAM,GAAG,SAAS,CAAA;IAqF5B,CAAC;IAjFQ,KAAK,CAAC,SAAS;;QACpB,MAAM,OAAO,GAAG,MAAM,CAAA,MAAA,IAAI,CAAC,aAAa,qDAAG,IAAI,CAAC,OAAO,CAAC,iBAAiB,CAAC,CAAC,CAAA,CAAA;QAC3E,IAAI,CAAC,OAAO,EAAE;YACZ,MAAM,IAAI,KAAK,CAAC,0BAA0B,CAAC,CAAA;SAC5C;QACD,OAAO,OAAO,CAAC,WAAqC,CAAA;IACtD,CAAC;IAEM,KAAK,CAAC,WAAW;QACtB,MAAM,OAAO,GAAG,MAAM,IAAI,CAAC,SAAS,EAAE,CAAA;QACtC,OAAO,OAAO,CAAC,WAAW,EAAE,CAAA;IAC9B,CAAC;IAEM,WAAW,CAAC,KAAa,EAAE,IAAiB;QACjD,OAAO,IAAA,uBAAgB,EAAU,KAAK,EAAC,QAAQ,EAAC,EAAE;;YAChD,MAAM,eAAe,GAAG,MAAM,IAAI,CAAC,SAAS,EAAE,CAAA;YAC9C,MAAM,EAAE,GAAG,IAAI,CAAC,UAAU,KAAK,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,IAAI,CAAC,UAAU,GAAG,CAAC,CAAA,CAAC,uBAAuB;YAClF,MAAM,CAAC,GAAG,IAAI,CAAC,UAAU,KAAK,CAAC,CAAA;YAE/B,IAAI,EAAE,KAAK,EAAE,UAAU,EAAE,GAAG,EAAE,QAAQ,EAAE,GAAG,KAAK,CAAA;YAChD,UAAU,GAAG,IAAI,CAAC,GAAG,CAAC,CAAC,EAAE,UAAU,GAAG,EAAE,CAAC,CAAA;YACzC,QAAQ,IAAI,EAAE,CAAA;YAEd,IAAI,QAAQ,GAAG,CAAC,IAAI,UAAU,GAAG,QAAQ,EAAE;gBACzC,QAAQ,CAAC,QAAQ,EAAE,CAAA;gBACnB,OAAM;aACP;YAED,MAAM,GAAG,GAAG,eAAe,CAAC,WAAW,CACrC;gBACE,GAAG,KAAK;gBACR,KAAK,EAAE,UAAU;gBACjB,GAAG,EAAE,QAAQ;aACd,EACD,IAAI,CACL,CAAA;YACD,MAAM,KAAK,GAAG,MAAM,GAAG,CAAC,IAAI,CAAC,IAAA,mBAAO,GAAE,CAAC,CAAC,
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{"version":3,"file":"GCContentAdapter.js","sourceRoot":"","sources":["../../src/GCContentAdapter/GCContentAdapter.ts"],"names":[],"mappings":";;AAAA,yEAGgD;AAChD,+BAAqC;AACrC,kDAA0D;AAC1D,6CAAmE;AACnE,8CAAwC;AAExC,eAAqB,SAAQ,oCAAsB;IAAnD;;QACU,eAAU,GAAG,IAAI,CAAA;QAEjB,gBAAW,GAAG,IAAI,CAAA;QAElB,WAAM,GAAG,SAAS,CAAA;IAqF5B,CAAC;IAjFQ,KAAK,CAAC,SAAS;;QACpB,MAAM,OAAO,GAAG,MAAM,CAAA,MAAA,IAAI,CAAC,aAAa,qDAAG,IAAI,CAAC,OAAO,CAAC,iBAAiB,CAAC,CAAC,CAAA,CAAA;QAC3E,IAAI,CAAC,OAAO,EAAE;YACZ,MAAM,IAAI,KAAK,CAAC,0BAA0B,CAAC,CAAA;SAC5C;QACD,OAAO,OAAO,CAAC,WAAqC,CAAA;IACtD,CAAC;IAEM,KAAK,CAAC,WAAW;QACtB,MAAM,OAAO,GAAG,MAAM,IAAI,CAAC,SAAS,EAAE,CAAA;QACtC,OAAO,OAAO,CAAC,WAAW,EAAE,CAAA;IAC9B,CAAC;IAEM,WAAW,CAAC,KAAa,EAAE,IAAiB;QACjD,OAAO,IAAA,uBAAgB,EAAU,KAAK,EAAC,QAAQ,EAAC,EAAE;;YAChD,MAAM,eAAe,GAAG,MAAM,IAAI,CAAC,SAAS,EAAE,CAAA;YAC9C,MAAM,EAAE,GAAG,IAAI,CAAC,UAAU,KAAK,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,IAAI,CAAC,UAAU,GAAG,CAAC,CAAA,CAAC,uBAAuB;YAClF,MAAM,CAAC,GAAG,IAAI,CAAC,UAAU,KAAK,CAAC,CAAA;YAE/B,IAAI,EAAE,KAAK,EAAE,UAAU,EAAE,GAAG,EAAE,QAAQ,EAAE,GAAG,KAAK,CAAA;YAChD,UAAU,GAAG,IAAI,CAAC,GAAG,CAAC,CAAC,EAAE,UAAU,GAAG,EAAE,CAAC,CAAA;YACzC,QAAQ,IAAI,EAAE,CAAA;YAEd,IAAI,QAAQ,GAAG,CAAC,IAAI,UAAU,GAAG,QAAQ,EAAE;gBACzC,QAAQ,CAAC,QAAQ,EAAE,CAAA;gBACnB,OAAM;aACP;YAED,MAAM,GAAG,GAAG,eAAe,CAAC,WAAW,CACrC;gBACE,GAAG,KAAK;gBACR,KAAK,EAAE,UAAU;gBACjB,GAAG,EAAE,QAAQ;aACd,EACD,IAAI,CACL,CAAA;YACD,MAAM,KAAK,GAAG,MAAM,IAAA,qBAAc,EAAC,GAAG,CAAC,IAAI,CAAC,IAAA,mBAAO,GAAE,CAAC,CAAC,CAAA;YACvD,MAAM,QAAQ,GAAG,CAAA,MAAA,KAAK,CAAC,CAAC,CAAC,0CAAE,GAAG,CAAC,KAAK,CAAC,KAAI,EAAE,CAAA;YAE3C,KAAK,IAAI,CAAC,GAAG,EAAE,EAAE,CAAC,GAAG,QAAQ,CAAC,MAAM,GAAG,EAAE,EAAE,CAAC,IAAI,IAAI,CAAC,WAAW,EAAE;gBAChE,MAAM,CAAC,GAAG,CAAC,CAAC,CAAC,CAAC,QAAQ,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,QAAQ,CAAC,KAAK,CAAC,CAAC,GAAG,EAAE,EAAE,CAAC,GAAG,EAAE,CAAC,CAAA;gBAC1D,IAAI,EAAE,GAAG,CAAC,CAAA;gBACV,IAAI,EAAE,GAAG,CAAC,CAAA;gBACV,IAAI,GAAG,GAAG,CAAC,CAAA;gBACX,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,CAAC,CAAC,MAAM,EAAE,CAAC,EAAE,EAAE;oBACjC,IAAI,CAAC,CAAC,CAAC,CAAC,KAAK,GAAG,IAAI,CAAC,CAAC,CAAC,CAAC,KAAK,GAAG,EAAE;wBAChC,EAAE,EAAE,CAAA;qBACL;yBAAM,IAAI,CAAC,CAAC,CAAC,CAAC,KAAK,GAAG,IAAI,CAAC,CAAC,CAAC,CAAC,KAAK,GAAG,EAAE;wBACvC,EAAE,EAAE,CAAA;qBACL;oBACD,IAAI,CAAC,CAAC,CAAC,CAAC,KAAK,GAAG,EAAE;wBAChB,GAAG,EAAE,CAAA;qBACN;iBACF;gBACD,MAAM,GAAG,GAAG,UAAU,CAAA;gBACtB,IAAI,KAAK,CAAA;gBACT,IAAI,IAAI,CAAC,MAAM,KAAK,SAAS,EAAE;oBAC7B,KAAK,GAAG,CAAC,EAAE,GAAG,EAAE,CAAC,GAAG,CAAC,GAAG,IAAI,CAAC,CAAC,CAAA;iBAC/B;qBAAM,IAAI,IAAI,CAAC,MAAM,KAAK,MAAM,EAAE;oBACjC,KAAK,GAAG,CAAC,EAAE,GAAG,EAAE,CAAC,GAAG,CAAC,EAAE,GAAG,EAAE,IAAI,CAAC,CAAC,CAAA;iBACnC;gBAED,QAAQ,CAAC,IAAI,CACX,IAAI,oBAAa,CAAC;oBAChB,QAAQ,EAAE,GAAG,IAAI,CAAC,EAAE,IAAI,GAAG,GAAG,CAAC,EAAE;oBACjC,KAAK,EAAE,GAAG,GAAG,CAAC;oBACd,GAAG,EAAE,GAAG,GAAG,CAAC,GAAG,IAAI,CAAC,WAAW;oBAC/B,KAAK;iBACN,CAAC,CACH,CAAA;aACF;YACD,QAAQ,CAAC,QAAQ,EAAE,CAAA;QACrB,CAAC,CAAC,CAAA;IACJ,CAAC;IAED;;;;OAIG;IACI,aAAa,EAAC,gBAAgB,IAAG,CAAC;;AAzF3C,4BA0FC;AAnFe,sBAAY,GAAG,CAAC,eAAe,CAAC,CAAA"}
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@@ -1,4 +1,5 @@
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import { BaseFeatureDataAdapter, } from '@jbrowse/core/data_adapters/BaseAdapter';
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import { firstValueFrom } from 'rxjs';
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import { ObservableCreate } from '@jbrowse/core/util/rxjs';
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import { SimpleFeature } from '@jbrowse/core/util';
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import { toArray } from 'rxjs/operators';
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@@ -39,7 +40,7 @@ export default class default_1 extends BaseFeatureDataAdapter {
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start: queryStart,
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}, opts);
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const feats = await ret.pipe(toArray())
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const feats = await firstValueFrom(ret.pipe(toArray()));
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const residues = ((_a = feats[0]) === null || _a === void 0 ? void 0 : _a.get('seq')) || '';
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for (let i = hw; i < residues.length - hw; i += this.windowDelta) {
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const r = f ? residues[i] : residues.slice(i - hw, i + hw);
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@@ -1 +1 @@
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{"version":3,"file":"GCContentAdapter.js","sourceRoot":"","sources":["../../src/GCContentAdapter/GCContentAdapter.ts"],"names":[],"mappings":"AAAA,OAAO,EACL,sBAAsB,GAEvB,MAAM,yCAAyC,CAAA;AAChD,OAAO,EAAE,gBAAgB,EAAE,MAAM,yBAAyB,CAAA;AAC1D,OAAO,EAAE,aAAa,EAAmB,MAAM,oBAAoB,CAAA;AACnE,OAAO,EAAE,OAAO,EAAE,MAAM,gBAAgB,CAAA;AAExC,MAAM,CAAC,OAAO,gBAAO,SAAQ,sBAAsB;IAAnD;;QACU,eAAU,GAAG,IAAI,CAAA;QAEjB,gBAAW,GAAG,IAAI,CAAA;QAElB,WAAM,GAAG,SAAS,CAAA;IAqF5B,CAAC;IAjFQ,KAAK,CAAC,SAAS;;QACpB,MAAM,OAAO,GAAG,MAAM,CAAA,MAAA,IAAI,CAAC,aAAa,qDAAG,IAAI,CAAC,OAAO,CAAC,iBAAiB,CAAC,CAAC,CAAA,CAAA;QAC3E,IAAI,CAAC,OAAO,EAAE;YACZ,MAAM,IAAI,KAAK,CAAC,0BAA0B,CAAC,CAAA;SAC5C;QACD,OAAO,OAAO,CAAC,WAAqC,CAAA;IACtD,CAAC;IAEM,KAAK,CAAC,WAAW;QACtB,MAAM,OAAO,GAAG,MAAM,IAAI,CAAC,SAAS,EAAE,CAAA;QACtC,OAAO,OAAO,CAAC,WAAW,EAAE,CAAA;IAC9B,CAAC;IAEM,WAAW,CAAC,KAAa,EAAE,IAAiB;QACjD,OAAO,gBAAgB,CAAU,KAAK,EAAC,QAAQ,EAAC,EAAE;;YAChD,MAAM,eAAe,GAAG,MAAM,IAAI,CAAC,SAAS,EAAE,CAAA;YAC9C,MAAM,EAAE,GAAG,IAAI,CAAC,UAAU,KAAK,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,IAAI,CAAC,UAAU,GAAG,CAAC,CAAA,CAAC,uBAAuB;YAClF,MAAM,CAAC,GAAG,IAAI,CAAC,UAAU,KAAK,CAAC,CAAA;YAE/B,IAAI,EAAE,KAAK,EAAE,UAAU,EAAE,GAAG,EAAE,QAAQ,EAAE,GAAG,KAAK,CAAA;YAChD,UAAU,GAAG,IAAI,CAAC,GAAG,CAAC,CAAC,EAAE,UAAU,GAAG,EAAE,CAAC,CAAA;YACzC,QAAQ,IAAI,EAAE,CAAA;YAEd,IAAI,QAAQ,GAAG,CAAC,IAAI,UAAU,GAAG,QAAQ,EAAE;gBACzC,QAAQ,CAAC,QAAQ,EAAE,CAAA;gBACnB,OAAM;aACP;YAED,MAAM,GAAG,GAAG,eAAe,CAAC,WAAW,CACrC;gBACE,GAAG,KAAK;gBACR,KAAK,EAAE,UAAU;gBACjB,GAAG,EAAE,QAAQ;aACd,EACD,IAAI,CACL,CAAA;YACD,MAAM,KAAK,GAAG,MAAM,GAAG,CAAC,IAAI,CAAC,OAAO,EAAE,CAAC,CAAC,
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{"version":3,"file":"GCContentAdapter.js","sourceRoot":"","sources":["../../src/GCContentAdapter/GCContentAdapter.ts"],"names":[],"mappings":"AAAA,OAAO,EACL,sBAAsB,GAEvB,MAAM,yCAAyC,CAAA;AAChD,OAAO,EAAE,cAAc,EAAE,MAAM,MAAM,CAAA;AACrC,OAAO,EAAE,gBAAgB,EAAE,MAAM,yBAAyB,CAAA;AAC1D,OAAO,EAAE,aAAa,EAAmB,MAAM,oBAAoB,CAAA;AACnE,OAAO,EAAE,OAAO,EAAE,MAAM,gBAAgB,CAAA;AAExC,MAAM,CAAC,OAAO,gBAAO,SAAQ,sBAAsB;IAAnD;;QACU,eAAU,GAAG,IAAI,CAAA;QAEjB,gBAAW,GAAG,IAAI,CAAA;QAElB,WAAM,GAAG,SAAS,CAAA;IAqF5B,CAAC;IAjFQ,KAAK,CAAC,SAAS;;QACpB,MAAM,OAAO,GAAG,MAAM,CAAA,MAAA,IAAI,CAAC,aAAa,qDAAG,IAAI,CAAC,OAAO,CAAC,iBAAiB,CAAC,CAAC,CAAA,CAAA;QAC3E,IAAI,CAAC,OAAO,EAAE;YACZ,MAAM,IAAI,KAAK,CAAC,0BAA0B,CAAC,CAAA;SAC5C;QACD,OAAO,OAAO,CAAC,WAAqC,CAAA;IACtD,CAAC;IAEM,KAAK,CAAC,WAAW;QACtB,MAAM,OAAO,GAAG,MAAM,IAAI,CAAC,SAAS,EAAE,CAAA;QACtC,OAAO,OAAO,CAAC,WAAW,EAAE,CAAA;IAC9B,CAAC;IAEM,WAAW,CAAC,KAAa,EAAE,IAAiB;QACjD,OAAO,gBAAgB,CAAU,KAAK,EAAC,QAAQ,EAAC,EAAE;;YAChD,MAAM,eAAe,GAAG,MAAM,IAAI,CAAC,SAAS,EAAE,CAAA;YAC9C,MAAM,EAAE,GAAG,IAAI,CAAC,UAAU,KAAK,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,IAAI,CAAC,UAAU,GAAG,CAAC,CAAA,CAAC,uBAAuB;YAClF,MAAM,CAAC,GAAG,IAAI,CAAC,UAAU,KAAK,CAAC,CAAA;YAE/B,IAAI,EAAE,KAAK,EAAE,UAAU,EAAE,GAAG,EAAE,QAAQ,EAAE,GAAG,KAAK,CAAA;YAChD,UAAU,GAAG,IAAI,CAAC,GAAG,CAAC,CAAC,EAAE,UAAU,GAAG,EAAE,CAAC,CAAA;YACzC,QAAQ,IAAI,EAAE,CAAA;YAEd,IAAI,QAAQ,GAAG,CAAC,IAAI,UAAU,GAAG,QAAQ,EAAE;gBACzC,QAAQ,CAAC,QAAQ,EAAE,CAAA;gBACnB,OAAM;aACP;YAED,MAAM,GAAG,GAAG,eAAe,CAAC,WAAW,CACrC;gBACE,GAAG,KAAK;gBACR,KAAK,EAAE,UAAU;gBACjB,GAAG,EAAE,QAAQ;aACd,EACD,IAAI,CACL,CAAA;YACD,MAAM,KAAK,GAAG,MAAM,cAAc,CAAC,GAAG,CAAC,IAAI,CAAC,OAAO,EAAE,CAAC,CAAC,CAAA;YACvD,MAAM,QAAQ,GAAG,CAAA,MAAA,KAAK,CAAC,CAAC,CAAC,0CAAE,GAAG,CAAC,KAAK,CAAC,KAAI,EAAE,CAAA;YAE3C,KAAK,IAAI,CAAC,GAAG,EAAE,EAAE,CAAC,GAAG,QAAQ,CAAC,MAAM,GAAG,EAAE,EAAE,CAAC,IAAI,IAAI,CAAC,WAAW,EAAE;gBAChE,MAAM,CAAC,GAAG,CAAC,CAAC,CAAC,CAAC,QAAQ,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,QAAQ,CAAC,KAAK,CAAC,CAAC,GAAG,EAAE,EAAE,CAAC,GAAG,EAAE,CAAC,CAAA;gBAC1D,IAAI,EAAE,GAAG,CAAC,CAAA;gBACV,IAAI,EAAE,GAAG,CAAC,CAAA;gBACV,IAAI,GAAG,GAAG,CAAC,CAAA;gBACX,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,CAAC,CAAC,MAAM,EAAE,CAAC,EAAE,EAAE;oBACjC,IAAI,CAAC,CAAC,CAAC,CAAC,KAAK,GAAG,IAAI,CAAC,CAAC,CAAC,CAAC,KAAK,GAAG,EAAE;wBAChC,EAAE,EAAE,CAAA;qBACL;yBAAM,IAAI,CAAC,CAAC,CAAC,CAAC,KAAK,GAAG,IAAI,CAAC,CAAC,CAAC,CAAC,KAAK,GAAG,EAAE;wBACvC,EAAE,EAAE,CAAA;qBACL;oBACD,IAAI,CAAC,CAAC,CAAC,CAAC,KAAK,GAAG,EAAE;wBAChB,GAAG,EAAE,CAAA;qBACN;iBACF;gBACD,MAAM,GAAG,GAAG,UAAU,CAAA;gBACtB,IAAI,KAAK,CAAA;gBACT,IAAI,IAAI,CAAC,MAAM,KAAK,SAAS,EAAE;oBAC7B,KAAK,GAAG,CAAC,EAAE,GAAG,EAAE,CAAC,GAAG,CAAC,GAAG,IAAI,CAAC,CAAC,CAAA;iBAC/B;qBAAM,IAAI,IAAI,CAAC,MAAM,KAAK,MAAM,EAAE;oBACjC,KAAK,GAAG,CAAC,EAAE,GAAG,EAAE,CAAC,GAAG,CAAC,EAAE,GAAG,EAAE,IAAI,CAAC,CAAC,CAAA;iBACnC;gBAED,QAAQ,CAAC,IAAI,CACX,IAAI,aAAa,CAAC;oBAChB,QAAQ,EAAE,GAAG,IAAI,CAAC,EAAE,IAAI,GAAG,GAAG,CAAC,EAAE;oBACjC,KAAK,EAAE,GAAG,GAAG,CAAC;oBACd,GAAG,EAAE,GAAG,GAAG,CAAC,GAAG,IAAI,CAAC,WAAW;oBAC/B,KAAK;iBACN,CAAC,CACH,CAAA;aACF;YACD,QAAQ,CAAC,QAAQ,EAAE,CAAA;QACrB,CAAC,CAAC,CAAA;IACJ,CAAC;IAED;;;;OAIG;IACI,aAAa,EAAC,gBAAgB,IAAG,CAAC;;AAlF3B,sBAAY,GAAG,CAAC,eAAe,CAAC,CAAA"}
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package/package.json
CHANGED
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{
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"name": "@jbrowse/plugin-gccontent",
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"version": "2.3.
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"version": "2.3.3",
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"description": "JBrowse 2 gccontent concepts",
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"keywords": [
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"jbrowse",
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"mobx-react": "^7.0.0",
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"mobx-state-tree": "^5.0.0",
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"react": ">=16.8.0",
|
|
49
|
-
"rxjs": "^
|
|
49
|
+
"rxjs": "^7.0.0"
|
|
50
50
|
},
|
|
51
51
|
"publishConfig": {
|
|
52
52
|
"access": "public"
|
|
@@ -54,5 +54,5 @@
|
|
|
54
54
|
"distModule": "esm/index.js",
|
|
55
55
|
"srcModule": "src/index.ts",
|
|
56
56
|
"module": "esm/index.js",
|
|
57
|
-
"gitHead": "
|
|
57
|
+
"gitHead": "283e0387ccd5acc9f092cf00804d1fcac212e68d"
|
|
58
58
|
}
|
|
@@ -2,6 +2,7 @@ import {
|
|
|
2
2
|
BaseFeatureDataAdapter,
|
|
3
3
|
BaseOptions,
|
|
4
4
|
} from '@jbrowse/core/data_adapters/BaseAdapter'
|
|
5
|
+
import { firstValueFrom } from 'rxjs'
|
|
5
6
|
import { ObservableCreate } from '@jbrowse/core/util/rxjs'
|
|
6
7
|
import { SimpleFeature, Feature, Region } from '@jbrowse/core/util'
|
|
7
8
|
import { toArray } from 'rxjs/operators'
|
|
@@ -51,7 +52,7 @@ export default class extends BaseFeatureDataAdapter {
|
|
|
51
52
|
},
|
|
52
53
|
opts,
|
|
53
54
|
)
|
|
54
|
-
const feats = await ret.pipe(toArray())
|
|
55
|
+
const feats = await firstValueFrom(ret.pipe(toArray()))
|
|
55
56
|
const residues = feats[0]?.get('seq') || ''
|
|
56
57
|
|
|
57
58
|
for (let i = hw; i < residues.length - hw; i += this.windowDelta) {
|