@jbrowse/plugin-gccontent 2.3.0 → 2.3.2

package/dist/LinearGCContentDisplay/config.d.ts

@@ -1,2 +1,5 @@
 import PluginManager from '@jbrowse/core/PluginManager';
+/**
+ * #config LinearGCContentDisplay
+ */
 export default function WiggleConfigFactory(pluginManager: PluginManager): import("@jbrowse/core/configuration").AnyConfigurationSchemaType;

package/dist/LinearGCContentDisplay/config.js

@@ -4,10 +4,15 @@ const configuration_1 = require("@jbrowse/core/configuration");
 /**
  * #config LinearGCContentDisplay
  */
-function x() { } // eslint-disable-line @typescript-eslint/no-unused-vars
 function WiggleConfigFactory(pluginManager) {
-    const baseConfiguration = pluginManager.getDisplayType('LinearWiggleDisplay').configSchema;
-    return (0, configuration_1.ConfigurationSchema)('LinearGCContentDisplay', {}, { baseConfiguration, explicitlyTyped: true });
+    return (0, configuration_1.ConfigurationSchema)('LinearGCContentDisplay', {}, {
+        /**
+         * #baseConfiguration
+         */
+        baseConfiguration: pluginManager.getDisplayType('LinearWiggleDisplay')
+            .configSchema,
+        explicitlyTyped: true,
+    });
 }
 exports.default = WiggleConfigFactory;
 //# sourceMappingURL=config.js.map

package/dist/LinearGCContentDisplay/config.js.map

@@ -1 +1 @@
-{"version":3,"file":"config.js","sourceRoot":"","sources":["../../src/LinearGCContentDisplay/config.ts"],"names":[],"mappings":";;AAAA,+DAAiE;AAGjE;;GAEG;AACH,SAAS,CAAC,KAAI,CAAC,CAAC,wDAAwD;AAExE,SAAwB,mBAAmB,CAAC,aAA4B;IACtE,MAAM,iBAAiB,GAAG,aAAa,CAAC,cAAc,CACpD,qBAAqB,CACtB,CAAC,YAAY,CAAA;IAEd,OAAO,IAAA,mCAAmB,EACxB,wBAAwB,EACxB,EAAE,EACF,EAAE,iBAAiB,EAAE,eAAe,EAAE,IAAI,EAAE,CAC7C,CAAA;AACH,CAAC;AAVD,sCAUC"}
+{"version":3,"file":"config.js","sourceRoot":"","sources":["../../src/LinearGCContentDisplay/config.ts"],"names":[],"mappings":";;AAAA,+DAAiE;AAGjE;;GAEG;AACH,SAAwB,mBAAmB,CAAC,aAA4B;IACtE,OAAO,IAAA,mCAAmB,EACxB,wBAAwB,EACxB,EAAE,EACF;QACE;;WAEG;QACH,iBAAiB,EAAE,aAAa,CAAC,cAAc,CAAC,qBAAqB,CAAC;aACnE,YAAY;QACf,eAAe,EAAE,IAAI;KACtB,CACF,CAAA;AACH,CAAC;AAbD,sCAaC"}

package/dist/LinearGCContentDisplay/stateModel.d.ts

@@ -1,6 +1,10 @@
 /// <reference types="react" />
 import { AnyConfigurationSchemaType } from '@jbrowse/core/configuration';
 import PluginManager from '@jbrowse/core/PluginManager';
+/**
+ * #stateModel LinearGCContentDisplay
+ * base model BaseWiggleDisplayModel
+ */
 export default function stateModelFactory(pluginManager: PluginManager, configSchema: AnyConfigurationSchemaType): import("mobx-state-tree").IModelType<{
     id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
     type: import("mobx-state-tree").ISimpleType<string>;
@@ -75,6 +79,9 @@ export default function stateModelFactory(pluginManager: PluginManager, configSc
         min: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
     }, {}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>, [undefined]>;
 } & {
+    /**
+     * #property
+     */
     type: import("mobx-state-tree").ISimpleType<"LinearGCContentDisplay">;
 }, {
     rendererTypeName: string;
@@ -300,5 +307,10 @@ export default function stateModelFactory(pluginManager: PluginManager, configSc
         overrideHeight: number;
     }): Promise<JSX.Element>;
 } & {
+    /**
+     * #method
+     * retrieves the sequence adapter from parent track, and puts it as a
+     * subadapter on a GCContentAdapter
+     */
     renderProps(): any;
 }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>;

package/dist/LinearGCContentDisplay/stateModel.js

@@ -3,14 +3,26 @@ Object.defineProperty(exports, "__esModule", { value: true });
 const configuration_1 = require("@jbrowse/core/configuration");
 const plugin_wiggle_1 = require("@jbrowse/plugin-wiggle");
 const mobx_state_tree_1 = require("mobx-state-tree");
+/**
+ * #stateModel LinearGCContentDisplay
+ * base model BaseWiggleDisplayModel
+ */
 function stateModelFactory(pluginManager, configSchema) {
     return mobx_state_tree_1.types
         .compose('LinearGCContentDisplay', (0, plugin_wiggle_1.linearWiggleDisplayModelFactory)(pluginManager, configSchema), mobx_state_tree_1.types.model({
+        /**
+         * #property
+         */
         type: mobx_state_tree_1.types.literal('LinearGCContentDisplay'),
     }))
         .views(self => {
         const { renderProps: superRenderProps } = self;
         return {
+            /**
+             * #method
+             * retrieves the sequence adapter from parent track, and puts it as a
+             * subadapter on a GCContentAdapter
+             */
             renderProps() {
                 const sequenceAdapter = (0, configuration_1.getConf)(self.parentTrack, 'adapter');
                 return {

package/dist/LinearGCContentDisplay/stateModel.js.map

@@ -1 +1 @@
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+{"version":3,"file":"stateModel.js","sourceRoot":"","sources":["../../src/LinearGCContentDisplay/stateModel.ts"],"names":[],"mappings":";;AAAA,+DAGoC;AAEpC,0DAAwE;AACxE,qDAAuC;AAEvC;;;GAGG;AACH,SAAwB,iBAAiB,CACvC,aAA4B,EAC5B,YAAwC;IAExC,OAAO,uBAAK;SACT,OAAO,CACN,wBAAwB,EACxB,IAAA,+CAA+B,EAAC,aAAa,EAAE,YAAY,CAAC,EAC5D,uBAAK,CAAC,KAAK,CAAC;QACV;;WAEG;QACH,IAAI,EAAE,uBAAK,CAAC,OAAO,CAAC,wBAAwB,CAAC;KAC9C,CAAC,CACH;SACA,KAAK,CAAC,IAAI,CAAC,EAAE;QACZ,MAAM,EAAE,WAAW,EAAE,gBAAgB,EAAE,GAAG,IAAI,CAAA;QAC9C,OAAO;YACL;;;;eAIG;YACH,WAAW;gBACT,MAAM,eAAe,GAAG,IAAA,uBAAO,EAAC,IAAI,CAAC,WAAW,EAAE,SAAS,CAAC,CAAA;gBAC5D,OAAO;oBACL,GAAG,gBAAgB,EAAE;oBACrB,aAAa,EAAE;wBACb,IAAI,EAAE,kBAAkB;wBACxB,eAAe;qBAChB;iBACF,CAAA;YACH,CAAC;SACF,CAAA;IACH,CAAC,CAAC,CAAA;AACN,CAAC;AAnCD,oCAmCC"}

package/esm/LinearGCContentDisplay/config.d.ts

@@ -1,2 +1,5 @@
 import PluginManager from '@jbrowse/core/PluginManager';
+/**
+ * #config LinearGCContentDisplay
+ */
 export default function WiggleConfigFactory(pluginManager: PluginManager): import("@jbrowse/core/configuration").AnyConfigurationSchemaType;

package/esm/LinearGCContentDisplay/config.js

@@ -2,9 +2,14 @@ import { ConfigurationSchema } from '@jbrowse/core/configuration';
 /**
  * #config LinearGCContentDisplay
  */
-function x() { } // eslint-disable-line @typescript-eslint/no-unused-vars
 export default function WiggleConfigFactory(pluginManager) {
-    const baseConfiguration = pluginManager.getDisplayType('LinearWiggleDisplay').configSchema;
-    return ConfigurationSchema('LinearGCContentDisplay', {}, { baseConfiguration, explicitlyTyped: true });
+    return ConfigurationSchema('LinearGCContentDisplay', {}, {
+        /**
+         * #baseConfiguration
+         */
+        baseConfiguration: pluginManager.getDisplayType('LinearWiggleDisplay')
+            .configSchema,
+        explicitlyTyped: true,
+    });
 }
 //# sourceMappingURL=config.js.map

package/esm/LinearGCContentDisplay/config.js.map

@@ -1 +1 @@
-{"version":3,"file":"config.js","sourceRoot":"","sources":["../../src/LinearGCContentDisplay/config.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,mBAAmB,EAAE,MAAM,6BAA6B,CAAA;AAGjE;;GAEG;AACH,SAAS,CAAC,KAAI,CAAC,CAAC,wDAAwD;AAExE,MAAM,CAAC,OAAO,UAAU,mBAAmB,CAAC,aAA4B;IACtE,MAAM,iBAAiB,GAAG,aAAa,CAAC,cAAc,CACpD,qBAAqB,CACtB,CAAC,YAAY,CAAA;IAEd,OAAO,mBAAmB,CACxB,wBAAwB,EACxB,EAAE,EACF,EAAE,iBAAiB,EAAE,eAAe,EAAE,IAAI,EAAE,CAC7C,CAAA;AACH,CAAC"}
+{"version":3,"file":"config.js","sourceRoot":"","sources":["../../src/LinearGCContentDisplay/config.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,mBAAmB,EAAE,MAAM,6BAA6B,CAAA;AAGjE;;GAEG;AACH,MAAM,CAAC,OAAO,UAAU,mBAAmB,CAAC,aAA4B;IACtE,OAAO,mBAAmB,CACxB,wBAAwB,EACxB,EAAE,EACF;QACE;;WAEG;QACH,iBAAiB,EAAE,aAAa,CAAC,cAAc,CAAC,qBAAqB,CAAC;aACnE,YAAY;QACf,eAAe,EAAE,IAAI;KACtB,CACF,CAAA;AACH,CAAC"}

package/esm/LinearGCContentDisplay/stateModel.d.ts

@@ -1,6 +1,10 @@
 /// <reference types="react" />
 import { AnyConfigurationSchemaType } from '@jbrowse/core/configuration';
 import PluginManager from '@jbrowse/core/PluginManager';
+/**
+ * #stateModel LinearGCContentDisplay
+ * base model BaseWiggleDisplayModel
+ */
 export default function stateModelFactory(pluginManager: PluginManager, configSchema: AnyConfigurationSchemaType): import("mobx-state-tree").IModelType<{
     id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
     type: import("mobx-state-tree").ISimpleType<string>;
@@ -75,6 +79,9 @@ export default function stateModelFactory(pluginManager: PluginManager, configSc
         min: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
     }, {}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>, [undefined]>;
 } & {
+    /**
+     * #property
+     */
     type: import("mobx-state-tree").ISimpleType<"LinearGCContentDisplay">;
 }, {
     rendererTypeName: string;
@@ -300,5 +307,10 @@ export default function stateModelFactory(pluginManager: PluginManager, configSc
         overrideHeight: number;
     }): Promise<JSX.Element>;
 } & {
+    /**
+     * #method
+     * retrieves the sequence adapter from parent track, and puts it as a
+     * subadapter on a GCContentAdapter
+     */
     renderProps(): any;
 }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>;

package/esm/LinearGCContentDisplay/stateModel.js

@@ -1,14 +1,26 @@
 import { getConf, } from '@jbrowse/core/configuration';
 import { linearWiggleDisplayModelFactory } from '@jbrowse/plugin-wiggle';
 import { types } from 'mobx-state-tree';
+/**
+ * #stateModel LinearGCContentDisplay
+ * base model BaseWiggleDisplayModel
+ */
 export default function stateModelFactory(pluginManager, configSchema) {
     return types
         .compose('LinearGCContentDisplay', linearWiggleDisplayModelFactory(pluginManager, configSchema), types.model({
+        /**
+         * #property
+         */
         type: types.literal('LinearGCContentDisplay'),
     }))
         .views(self => {
         const { renderProps: superRenderProps } = self;
         return {
+            /**
+             * #method
+             * retrieves the sequence adapter from parent track, and puts it as a
+             * subadapter on a GCContentAdapter
+             */
             renderProps() {
                 const sequenceAdapter = getConf(self.parentTrack, 'adapter');
                 return {

package/esm/LinearGCContentDisplay/stateModel.js.map

@@ -1 +1 @@
-{"version":3,"file":"stateModel.js","sourceRoot":"","sources":["../../src/LinearGCContentDisplay/stateModel.ts"],"names":[],"mappings":"AAAA,OAAO,EACL,OAAO,GAER,MAAM,6BAA6B,CAAA;AAEpC,OAAO,EAAE,+BAA+B,EAAE,MAAM,wBAAwB,CAAA;AACxE,OAAO,EAAE,KAAK,EAAE,MAAM,iBAAiB,CAAA;AAEvC,MAAM,CAAC,OAAO,UAAU,iBAAiB,CACvC,aAA4B,EAC5B,YAAwC;IAExC,OAAO,KAAK;SACT,OAAO,CACN,wBAAwB,EACxB,+BAA+B,CAAC,aAAa,EAAE,YAAY,CAAC,EAC5D,KAAK,CAAC,KAAK,CAAC;QACV,IAAI,EAAE,KAAK,CAAC,OAAO,CAAC,wBAAwB,CAAC;KAC9C,CAAC,CACH;SACA,KAAK,CAAC,IAAI,CAAC,EAAE;QACZ,MAAM,EAAE,WAAW,EAAE,gBAAgB,EAAE,GAAG,IAAI,CAAA;QAC9C,OAAO;YACL,WAAW;gBACT,MAAM,eAAe,GAAG,OAAO,CAAC,IAAI,CAAC,WAAW,EAAE,SAAS,CAAC,CAAA;gBAC5D,OAAO;oBACL,GAAG,gBAAgB,EAAE;oBACrB,aAAa,EAAE;wBACb,IAAI,EAAE,kBAAkB;wBACxB,eAAe;qBAChB;iBACF,CAAA;YACH,CAAC;SACF,CAAA;IACH,CAAC,CAAC,CAAA;AACN,CAAC"}
+{"version":3,"file":"stateModel.js","sourceRoot":"","sources":["../../src/LinearGCContentDisplay/stateModel.ts"],"names":[],"mappings":"AAAA,OAAO,EACL,OAAO,GAER,MAAM,6BAA6B,CAAA;AAEpC,OAAO,EAAE,+BAA+B,EAAE,MAAM,wBAAwB,CAAA;AACxE,OAAO,EAAE,KAAK,EAAE,MAAM,iBAAiB,CAAA;AAEvC;;;GAGG;AACH,MAAM,CAAC,OAAO,UAAU,iBAAiB,CACvC,aAA4B,EAC5B,YAAwC;IAExC,OAAO,KAAK;SACT,OAAO,CACN,wBAAwB,EACxB,+BAA+B,CAAC,aAAa,EAAE,YAAY,CAAC,EAC5D,KAAK,CAAC,KAAK,CAAC;QACV;;WAEG;QACH,IAAI,EAAE,KAAK,CAAC,OAAO,CAAC,wBAAwB,CAAC;KAC9C,CAAC,CACH;SACA,KAAK,CAAC,IAAI,CAAC,EAAE;QACZ,MAAM,EAAE,WAAW,EAAE,gBAAgB,EAAE,GAAG,IAAI,CAAA;QAC9C,OAAO;YACL;;;;eAIG;YACH,WAAW;gBACT,MAAM,eAAe,GAAG,OAAO,CAAC,IAAI,CAAC,WAAW,EAAE,SAAS,CAAC,CAAA;gBAC5D,OAAO;oBACL,GAAG,gBAAgB,EAAE;oBACrB,aAAa,EAAE;wBACb,IAAI,EAAE,kBAAkB;wBACxB,eAAe;qBAChB;iBACF,CAAA;YACH,CAAC;SACF,CAAA;IACH,CAAC,CAAC,CAAA;AACN,CAAC"}

package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@jbrowse/plugin-gccontent",
-  "version": "2.3.0",
+  "version": "2.3.2",
   "description": "JBrowse 2 gccontent concepts",
   "keywords": [
     "jbrowse",
@@ -54,5 +54,5 @@
   "distModule": "esm/index.js",
   "srcModule": "src/index.ts",
   "module": "esm/index.js",
-  "gitHead": "a85b280a8af4d1a11e81ab42913f5f6049e6e580"
+  "gitHead": "467d973535bb7b2664e9f66311fb0dc21c1ce5ba"
 }

package/src/LinearGCContentDisplay/config.ts

@@ -4,16 +4,17 @@ import PluginManager from '@jbrowse/core/PluginManager'
 /**
  * #config LinearGCContentDisplay
  */
-function x() {} // eslint-disable-line @typescript-eslint/no-unused-vars
-
 export default function WiggleConfigFactory(pluginManager: PluginManager) {
-  const baseConfiguration = pluginManager.getDisplayType(
-    'LinearWiggleDisplay',
-  ).configSchema
-
   return ConfigurationSchema(
     'LinearGCContentDisplay',
     {},
-    { baseConfiguration, explicitlyTyped: true },
+    {
+      /**
+       * #baseConfiguration
+       */
+      baseConfiguration: pluginManager.getDisplayType('LinearWiggleDisplay')
+        .configSchema,
+      explicitlyTyped: true,
+    },
   )
 }

package/src/LinearGCContentDisplay/stateModel.ts

@@ -6,6 +6,10 @@ import PluginManager from '@jbrowse/core/PluginManager'
 import { linearWiggleDisplayModelFactory } from '@jbrowse/plugin-wiggle'
 import { types } from 'mobx-state-tree'
 
+/**
+ * #stateModel LinearGCContentDisplay
+ * base model BaseWiggleDisplayModel
+ */
 export default function stateModelFactory(
   pluginManager: PluginManager,
   configSchema: AnyConfigurationSchemaType,
@@ -15,12 +19,20 @@ export default function stateModelFactory(
       'LinearGCContentDisplay',
       linearWiggleDisplayModelFactory(pluginManager, configSchema),
       types.model({
+        /**
+         * #property
+         */
         type: types.literal('LinearGCContentDisplay'),
       }),
     )
     .views(self => {
       const { renderProps: superRenderProps } = self
       return {
+        /**
+         * #method
+         * retrieves the sequence adapter from parent track, and puts it as a
+         * subadapter on a GCContentAdapter
+         */
         renderProps() {
           const sequenceAdapter = getConf(self.parentTrack, 'adapter')
           return {