@jbrowse/plugin-gccontent 2.2.2 → 2.3.0

package/dist/GCContentAdapter/configSchema.js

@@ -10,7 +10,10 @@ const GCContentAdapterF = (pluginManager) => {
         /**
          * #slot
          */
-        sequenceAdapter: pluginManager.pluggableConfigSchemaType('adapter'),
+        sequenceAdapter: {
+            type: 'frozen',
+            defaultValue: null,
+        },
     }, { explicitlyTyped: true });
 };
 exports.default = GCContentAdapterF;

package/dist/GCContentAdapter/configSchema.js.map

@@ -1 +1 @@
-{"version":3,"file":"configSchema.js","sourceRoot":"","sources":["../../src/GCContentAdapter/configSchema.ts"],"names":[],"mappings":";;AACA,+DAAiE;AAEjE;;GAEG;AACH,SAAS,CAAC,KAAI,CAAC,CAAC,wDAAwD;AAExE,MAAM,iBAAiB,GAAG,CAAC,aAA4B,EAAE,EAAE;IACzD,OAAO,IAAA,mCAAmB,EACxB,kBAAkB,EAClB;QACE;;WAEG;QACH,eAAe,EAAE,aAAa,CAAC,yBAAyB,CAAC,SAAS,CAAC;KACpE,EACD,EAAE,eAAe,EAAE,IAAI,EAAE,CAC1B,CAAA;AACH,CAAC,CAAA;AAED,kBAAe,iBAAiB,CAAA"}
+{"version":3,"file":"configSchema.js","sourceRoot":"","sources":["../../src/GCContentAdapter/configSchema.ts"],"names":[],"mappings":";;AACA,+DAAiE;AAEjE;;GAEG;AACH,SAAS,CAAC,KAAI,CAAC,CAAC,wDAAwD;AAExE,MAAM,iBAAiB,GAAG,CAAC,aAA4B,EAAE,EAAE;IACzD,OAAO,IAAA,mCAAmB,EACxB,kBAAkB,EAClB;QACE;;WAEG;QACH,eAAe,EAAE;YACf,IAAI,EAAE,QAAQ;YACd,YAAY,EAAE,IAAI;SACnB;KACF,EACD,EAAE,eAAe,EAAE,IAAI,EAAE,CAC1B,CAAA;AACH,CAAC,CAAA;AAED,kBAAe,iBAAiB,CAAA"}

package/dist/GCContentAdapter/index.js

@@ -31,11 +31,9 @@ const configSchema_1 = __importDefault(require("./configSchema"));
 exports.default = (pluginManager) => {
     pluginManager.addAdapterType(() => new AdapterType_1.default({
         name: 'GCContentAdapter',
+        displayName: 'GC content adapter',
         adapterMetadata: {
-            category: null,
             hiddenFromGUI: true,
-            displayName: null,
-            description: null,
         },
         configSchema: (0, configSchema_1.default)(pluginManager),
         getAdapterClass: () => Promise.resolve().then(() => __importStar(require('./GCContentAdapter'))).then(r => r.default),

package/dist/GCContentAdapter/index.js.map

@@ -1 +1 @@
-{"version":3,"file":"index.js","sourceRoot":"","sources":["../../src/GCContentAdapter/index.ts"],"names":[],"mappings":";;;;;;;;;;;;;;;;;;;;;;;;;;;;AACA,kGAAyE;AAEzE,kEAA0C;AAE1C,kBAAe,CAAC,aAA4B,EAAE,EAAE;IAC9C,aAAa,CAAC,cAAc,CAC1B,GAAG,EAAE,CACH,IAAI,qBAAW,CAAC;QACd,IAAI,EAAE,kBAAkB;QACxB,eAAe,EAAE;YACf,QAAQ,EAAE,IAAI;YACd,aAAa,EAAE,IAAI;YACnB,WAAW,EAAE,IAAI;YACjB,WAAW,EAAE,IAAI;SAClB;QACD,YAAY,EAAE,IAAA,sBAAa,EAAC,aAAa,CAAC;QAC1C,eAAe,EAAE,GAAG,EAAE,CACpB,kDAAO,oBAAoB,IAAE,IAAI,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,OAAO,CAAC;KACpD,CAAC,CACL,CAAA;AACH,CAAC,CAAA"}
+{"version":3,"file":"index.js","sourceRoot":"","sources":["../../src/GCContentAdapter/index.ts"],"names":[],"mappings":";;;;;;;;;;;;;;;;;;;;;;;;;;;;AACA,kGAAyE;AAEzE,kEAA0C;AAE1C,kBAAe,CAAC,aAA4B,EAAE,EAAE;IAC9C,aAAa,CAAC,cAAc,CAC1B,GAAG,EAAE,CACH,IAAI,qBAAW,CAAC;QACd,IAAI,EAAE,kBAAkB;QACxB,WAAW,EAAE,oBAAoB;QACjC,eAAe,EAAE;YACf,aAAa,EAAE,IAAI;SACpB;QACD,YAAY,EAAE,IAAA,sBAAa,EAAC,aAAa,CAAC;QAC1C,eAAe,EAAE,GAAG,EAAE,CACpB,kDAAO,oBAAoB,IAAE,IAAI,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,OAAO,CAAC;KACpD,CAAC,CACL,CAAA;AACH,CAAC,CAAA"}

package/dist/LinearGCContentDisplay/index.js

@@ -3,21 +3,23 @@ var __importDefault = (this && this.__importDefault) || function (mod) {
     return (mod && mod.__esModule) ? mod : { "default": mod };
 };
 Object.defineProperty(exports, "__esModule", { value: true });
-const plugin_linear_genome_view_1 = require("@jbrowse/plugin-linear-genome-view");
+const pluggableElementTypes_1 = require("@jbrowse/core/pluggableElementTypes");
+const plugin_wiggle_1 = require("@jbrowse/plugin-wiggle");
 const config_1 = __importDefault(require("./config"));
 const stateModel_1 = __importDefault(require("./stateModel"));
 exports.default = (pluginManager) => {
     pluginManager.addDisplayType(() => {
         const configSchema = (0, config_1.default)(pluginManager);
         const stateModel = (0, stateModel_1.default)(pluginManager, configSchema);
-        return {
+        return new pluggableElementTypes_1.DisplayType({
             name: 'LinearGCContentDisplay',
             configSchema,
             stateModel,
+            displayName: 'GC content display',
             trackType: 'ReferenceSequenceTrack',
             viewType: 'LinearGenomeView',
-            ReactComponent: plugin_linear_genome_view_1.BaseLinearDisplayComponent,
-        };
+            ReactComponent: plugin_wiggle_1.LinearWiggleDisplayReactComponent,
+        });
     });
 };
 //# sourceMappingURL=index.js.map

package/dist/LinearGCContentDisplay/index.js.map

@@ -1 +1 @@
-{"version":3,"file":"index.js","sourceRoot":"","sources":["../../src/LinearGCContentDisplay/index.ts"],"names":[],"mappings":";;;;;AACA,kFAA+E;AAE/E,sDAA0C;AAC1C,8DAA4C;AAE5C,kBAAe,CAAC,aAA4B,EAAE,EAAE;IAC9C,aAAa,CAAC,cAAc,CAAC,GAAG,EAAE;QAChC,MAAM,YAAY,GAAG,IAAA,gBAAmB,EAAC,aAAa,CAAC,CAAA;QACvD,MAAM,UAAU,GAAG,IAAA,oBAAiB,EAAC,aAAa,EAAE,YAAY,CAAC,CAAA;QACjE,OAAO;YACL,IAAI,EAAE,wBAAwB;YAC9B,YAAY;YACZ,UAAU;YACV,SAAS,EAAE,wBAAwB;YACnC,QAAQ,EAAE,kBAAkB;YAC5B,cAAc,EAAE,sDAA0B;SAC3C,CAAA;IACH,CAAC,CAAC,CAAA;AACJ,CAAC,CAAA"}
+{"version":3,"file":"index.js","sourceRoot":"","sources":["../../src/LinearGCContentDisplay/index.ts"],"names":[],"mappings":";;;;;AAAA,+EAAiE;AAEjE,0DAA0E;AAE1E,sDAA0C;AAC1C,8DAA4C;AAE5C,kBAAe,CAAC,aAA4B,EAAE,EAAE;IAC9C,aAAa,CAAC,cAAc,CAAC,GAAG,EAAE;QAChC,MAAM,YAAY,GAAG,IAAA,gBAAmB,EAAC,aAAa,CAAC,CAAA;QACvD,MAAM,UAAU,GAAG,IAAA,oBAAiB,EAAC,aAAa,EAAE,YAAY,CAAC,CAAA;QACjE,OAAO,IAAI,mCAAW,CAAC;YACrB,IAAI,EAAE,wBAAwB;YAC9B,YAAY;YACZ,UAAU;YACV,WAAW,EAAE,oBAAoB;YACjC,SAAS,EAAE,wBAAwB;YACnC,QAAQ,EAAE,kBAAkB;YAC5B,cAAc,EAAE,iDAAiC;SAClD,CAAC,CAAA;IACJ,CAAC,CAAC,CAAA;AACJ,CAAC,CAAA"}

package/dist/LinearGCContentDisplay/stateModel.d.ts

@@ -130,10 +130,10 @@ export default function stateModelFactory(pluginManager: PluginManager, configSc
     reload(): void;
 } & {
     currBpPerPx: number;
+    scrollTop: number;
     message: string;
     featureIdUnderMouse: string | undefined;
     contextMenuFeature: import("@jbrowse/core/util").Feature | undefined;
-    scrollTop: number;
     estimatedRegionStatsP: Promise<import("@jbrowse/core/data_adapters/BaseAdapter").Stats> | undefined;
     estimatedRegionStats: import("@jbrowse/core/data_adapters/BaseAdapter").Stats | undefined;
 } & {
@@ -201,12 +201,11 @@ export default function stateModelFactory(pluginManager: PluginManager, configSc
         overrideHeight: number;
     }): Promise<JSX.Element>;
 } & {
-    statsReady: boolean;
     message: string | undefined;
     stats: {
         scoreMin: number;
         scoreMax: number;
-    };
+    } | undefined;
     statsFetchInProgress: AbortController | undefined;
 } & {
     updateStats(stats: {
@@ -247,14 +246,14 @@ export default function stateModelFactory(pluginManager: PluginManager, configSc
 } & {
     readonly filled: any;
     readonly summaryScoreModeSetting: any;
-    readonly domain: number[];
+    readonly domain: number[] | undefined;
     readonly needsScalebar: boolean;
     readonly scaleOpts: {
-        domain: number[];
+        domain: number[] | undefined;
         stats: {
             scoreMin: number;
             scoreMax: number;
-        };
+        } | undefined;
         autoscaleType: any;
         scaleType: any;
         inverted: any;
@@ -268,7 +267,7 @@ export default function stateModelFactory(pluginManager: PluginManager, configSc
         values: number[];
         format: (d: import("d3-scale").NumberValue) => string;
         position: import("d3-scale").ScaleLinear<number, number, never> | import("d3-scale").ScaleQuantize<number, never>;
-    };
+    } | undefined;
     readonly adapterCapabilities: string[];
 } & {
     renderProps(): any;

package/dist/LinearGCContentDisplay/stateModel.js

@@ -1,12 +1,11 @@
 "use strict";
 Object.defineProperty(exports, "__esModule", { value: true });
 const configuration_1 = require("@jbrowse/core/configuration");
+const plugin_wiggle_1 = require("@jbrowse/plugin-wiggle");
 const mobx_state_tree_1 = require("mobx-state-tree");
 function stateModelFactory(pluginManager, configSchema) {
-    const WigglePlugin = pluginManager.getPlugin('WigglePlugin');
-    const { linearWiggleDisplayModelFactory } = WigglePlugin.exports;
     return mobx_state_tree_1.types
-        .compose('LinearGCContentDisplay', linearWiggleDisplayModelFactory(pluginManager, configSchema), mobx_state_tree_1.types.model({
+        .compose('LinearGCContentDisplay', (0, plugin_wiggle_1.linearWiggleDisplayModelFactory)(pluginManager, configSchema), mobx_state_tree_1.types.model({
         type: mobx_state_tree_1.types.literal('LinearGCContentDisplay'),
     }))
         .views(self => {

package/dist/LinearGCContentDisplay/stateModel.js.map

@@ -1 +1 @@
-{"version":3,"file":"stateModel.js","sourceRoot":"","sources":["../../src/LinearGCContentDisplay/stateModel.ts"],"names":[],"mappings":";;AAAA,+DAGoC;AAEpC,qDAAuC;AAEvC,SAAwB,iBAAiB,CACvC,aAA4B,EAC5B,YAAwC;IAExC,MAAM,YAAY,GAAG,aAAa,CAAC,SAAS,CAC1C,cAAc,CAC6B,CAAA;IAC7C,MAAM,EAAE,+BAA+B,EAAE,GAAG,YAAY,CAAC,OAAO,CAAA;IAChE,OAAO,uBAAK;SACT,OAAO,CACN,wBAAwB,EACxB,+BAA+B,CAAC,aAAa,EAAE,YAAY,CAAC,EAC5D,uBAAK,CAAC,KAAK,CAAC;QACV,IAAI,EAAE,uBAAK,CAAC,OAAO,CAAC,wBAAwB,CAAC;KAC9C,CAAC,CACH;SACA,KAAK,CAAC,IAAI,CAAC,EAAE;QACZ,MAAM,EAAE,WAAW,EAAE,gBAAgB,EAAE,GAAG,IAAI,CAAA;QAC9C,OAAO;YACL,WAAW;gBACT,MAAM,eAAe,GAAG,IAAA,uBAAO,EAAC,IAAI,CAAC,WAAW,EAAE,SAAS,CAAC,CAAA;gBAC5D,OAAO;oBACL,GAAG,gBAAgB,EAAE;oBACrB,aAAa,EAAE;wBACb,IAAI,EAAE,kBAAkB;wBACxB,eAAe;qBAChB;iBACF,CAAA;YACH,CAAC;SACF,CAAA;IACH,CAAC,CAAC,CAAA;AACN,CAAC;AA/BD,oCA+BC"}
+{"version":3,"file":"stateModel.js","sourceRoot":"","sources":["../../src/LinearGCContentDisplay/stateModel.ts"],"names":[],"mappings":";;AAAA,+DAGoC;AAEpC,0DAAwE;AACxE,qDAAuC;AAEvC,SAAwB,iBAAiB,CACvC,aAA4B,EAC5B,YAAwC;IAExC,OAAO,uBAAK;SACT,OAAO,CACN,wBAAwB,EACxB,IAAA,+CAA+B,EAAC,aAAa,EAAE,YAAY,CAAC,EAC5D,uBAAK,CAAC,KAAK,CAAC;QACV,IAAI,EAAE,uBAAK,CAAC,OAAO,CAAC,wBAAwB,CAAC;KAC9C,CAAC,CACH;SACA,KAAK,CAAC,IAAI,CAAC,EAAE;QACZ,MAAM,EAAE,WAAW,EAAE,gBAAgB,EAAE,GAAG,IAAI,CAAA;QAC9C,OAAO;YACL,WAAW;gBACT,MAAM,eAAe,GAAG,IAAA,uBAAO,EAAC,IAAI,CAAC,WAAW,EAAE,SAAS,CAAC,CAAA;gBAC5D,OAAO;oBACL,GAAG,gBAAgB,EAAE;oBACrB,aAAa,EAAE;wBACb,IAAI,EAAE,kBAAkB;wBACxB,eAAe;qBAChB;iBACF,CAAA;YACH,CAAC;SACF,CAAA;IACH,CAAC,CAAC,CAAA;AACN,CAAC;AA3BD,oCA2BC"}

package/esm/GCContentAdapter/configSchema.js

@@ -8,7 +8,10 @@ const GCContentAdapterF = (pluginManager) => {
         /**
          * #slot
          */
-        sequenceAdapter: pluginManager.pluggableConfigSchemaType('adapter'),
+        sequenceAdapter: {
+            type: 'frozen',
+            defaultValue: null,
+        },
     }, { explicitlyTyped: true });
 };
 export default GCContentAdapterF;

package/esm/GCContentAdapter/configSchema.js.map

@@ -1 +1 @@
-{"version":3,"file":"configSchema.js","sourceRoot":"","sources":["../../src/GCContentAdapter/configSchema.ts"],"names":[],"mappings":"AACA,OAAO,EAAE,mBAAmB,EAAE,MAAM,6BAA6B,CAAA;AAEjE;;GAEG;AACH,SAAS,CAAC,KAAI,CAAC,CAAC,wDAAwD;AAExE,MAAM,iBAAiB,GAAG,CAAC,aAA4B,EAAE,EAAE;IACzD,OAAO,mBAAmB,CACxB,kBAAkB,EAClB;QACE;;WAEG;QACH,eAAe,EAAE,aAAa,CAAC,yBAAyB,CAAC,SAAS,CAAC;KACpE,EACD,EAAE,eAAe,EAAE,IAAI,EAAE,CAC1B,CAAA;AACH,CAAC,CAAA;AAED,eAAe,iBAAiB,CAAA"}
+{"version":3,"file":"configSchema.js","sourceRoot":"","sources":["../../src/GCContentAdapter/configSchema.ts"],"names":[],"mappings":"AACA,OAAO,EAAE,mBAAmB,EAAE,MAAM,6BAA6B,CAAA;AAEjE;;GAEG;AACH,SAAS,CAAC,KAAI,CAAC,CAAC,wDAAwD;AAExE,MAAM,iBAAiB,GAAG,CAAC,aAA4B,EAAE,EAAE;IACzD,OAAO,mBAAmB,CACxB,kBAAkB,EAClB;QACE;;WAEG;QACH,eAAe,EAAE;YACf,IAAI,EAAE,QAAQ;YACd,YAAY,EAAE,IAAI;SACnB;KACF,EACD,EAAE,eAAe,EAAE,IAAI,EAAE,CAC1B,CAAA;AACH,CAAC,CAAA;AAED,eAAe,iBAAiB,CAAA"}

package/esm/GCContentAdapter/index.js

@@ -3,11 +3,9 @@ import configSchemaF from './configSchema';
 export default (pluginManager) => {
     pluginManager.addAdapterType(() => new AdapterType({
         name: 'GCContentAdapter',
+        displayName: 'GC content adapter',
         adapterMetadata: {
-            category: null,
             hiddenFromGUI: true,
-            displayName: null,
-            description: null,
         },
         configSchema: configSchemaF(pluginManager),
         getAdapterClass: () => import('./GCContentAdapter').then(r => r.default),

package/esm/GCContentAdapter/index.js.map

@@ -1 +1 @@
-{"version":3,"file":"index.js","sourceRoot":"","sources":["../../src/GCContentAdapter/index.ts"],"names":[],"mappings":"AACA,OAAO,WAAW,MAAM,iDAAiD,CAAA;AAEzE,OAAO,aAAa,MAAM,gBAAgB,CAAA;AAE1C,eAAe,CAAC,aAA4B,EAAE,EAAE;IAC9C,aAAa,CAAC,cAAc,CAC1B,GAAG,EAAE,CACH,IAAI,WAAW,CAAC;QACd,IAAI,EAAE,kBAAkB;QACxB,eAAe,EAAE;YACf,QAAQ,EAAE,IAAI;YACd,aAAa,EAAE,IAAI;YACnB,WAAW,EAAE,IAAI;YACjB,WAAW,EAAE,IAAI;SAClB;QACD,YAAY,EAAE,aAAa,CAAC,aAAa,CAAC;QAC1C,eAAe,EAAE,GAAG,EAAE,CACpB,MAAM,CAAC,oBAAoB,CAAC,CAAC,IAAI,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,OAAO,CAAC;KACpD,CAAC,CACL,CAAA;AACH,CAAC,CAAA"}
+{"version":3,"file":"index.js","sourceRoot":"","sources":["../../src/GCContentAdapter/index.ts"],"names":[],"mappings":"AACA,OAAO,WAAW,MAAM,iDAAiD,CAAA;AAEzE,OAAO,aAAa,MAAM,gBAAgB,CAAA;AAE1C,eAAe,CAAC,aAA4B,EAAE,EAAE;IAC9C,aAAa,CAAC,cAAc,CAC1B,GAAG,EAAE,CACH,IAAI,WAAW,CAAC;QACd,IAAI,EAAE,kBAAkB;QACxB,WAAW,EAAE,oBAAoB;QACjC,eAAe,EAAE;YACf,aAAa,EAAE,IAAI;SACpB;QACD,YAAY,EAAE,aAAa,CAAC,aAAa,CAAC;QAC1C,eAAe,EAAE,GAAG,EAAE,CACpB,MAAM,CAAC,oBAAoB,CAAC,CAAC,IAAI,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,OAAO,CAAC;KACpD,CAAC,CACL,CAAA;AACH,CAAC,CAAA"}

package/esm/LinearGCContentDisplay/index.js

@@ -1,18 +1,20 @@
-import { BaseLinearDisplayComponent } from '@jbrowse/plugin-linear-genome-view';
+import { DisplayType } from '@jbrowse/core/pluggableElementTypes';
+import { LinearWiggleDisplayReactComponent } from '@jbrowse/plugin-wiggle';
 import configSchemaFactory from './config';
 import stateModelFactory from './stateModel';
 export default (pluginManager) => {
     pluginManager.addDisplayType(() => {
         const configSchema = configSchemaFactory(pluginManager);
         const stateModel = stateModelFactory(pluginManager, configSchema);
-        return {
+        return new DisplayType({
             name: 'LinearGCContentDisplay',
             configSchema,
             stateModel,
+            displayName: 'GC content display',
             trackType: 'ReferenceSequenceTrack',
             viewType: 'LinearGenomeView',
-            ReactComponent: BaseLinearDisplayComponent,
-        };
+            ReactComponent: LinearWiggleDisplayReactComponent,
+        });
     });
 };
 //# sourceMappingURL=index.js.map

package/esm/LinearGCContentDisplay/index.js.map

@@ -1 +1 @@
-{"version":3,"file":"index.js","sourceRoot":"","sources":["../../src/LinearGCContentDisplay/index.ts"],"names":[],"mappings":"AACA,OAAO,EAAE,0BAA0B,EAAE,MAAM,oCAAoC,CAAA;AAE/E,OAAO,mBAAmB,MAAM,UAAU,CAAA;AAC1C,OAAO,iBAAiB,MAAM,cAAc,CAAA;AAE5C,eAAe,CAAC,aAA4B,EAAE,EAAE;IAC9C,aAAa,CAAC,cAAc,CAAC,GAAG,EAAE;QAChC,MAAM,YAAY,GAAG,mBAAmB,CAAC,aAAa,CAAC,CAAA;QACvD,MAAM,UAAU,GAAG,iBAAiB,CAAC,aAAa,EAAE,YAAY,CAAC,CAAA;QACjE,OAAO;YACL,IAAI,EAAE,wBAAwB;YAC9B,YAAY;YACZ,UAAU;YACV,SAAS,EAAE,wBAAwB;YACnC,QAAQ,EAAE,kBAAkB;YAC5B,cAAc,EAAE,0BAA0B;SAC3C,CAAA;IACH,CAAC,CAAC,CAAA;AACJ,CAAC,CAAA"}
+{"version":3,"file":"index.js","sourceRoot":"","sources":["../../src/LinearGCContentDisplay/index.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,WAAW,EAAE,MAAM,qCAAqC,CAAA;AAEjE,OAAO,EAAE,iCAAiC,EAAE,MAAM,wBAAwB,CAAA;AAE1E,OAAO,mBAAmB,MAAM,UAAU,CAAA;AAC1C,OAAO,iBAAiB,MAAM,cAAc,CAAA;AAE5C,eAAe,CAAC,aAA4B,EAAE,EAAE;IAC9C,aAAa,CAAC,cAAc,CAAC,GAAG,EAAE;QAChC,MAAM,YAAY,GAAG,mBAAmB,CAAC,aAAa,CAAC,CAAA;QACvD,MAAM,UAAU,GAAG,iBAAiB,CAAC,aAAa,EAAE,YAAY,CAAC,CAAA;QACjE,OAAO,IAAI,WAAW,CAAC;YACrB,IAAI,EAAE,wBAAwB;YAC9B,YAAY;YACZ,UAAU;YACV,WAAW,EAAE,oBAAoB;YACjC,SAAS,EAAE,wBAAwB;YACnC,QAAQ,EAAE,kBAAkB;YAC5B,cAAc,EAAE,iCAAiC;SAClD,CAAC,CAAA;IACJ,CAAC,CAAC,CAAA;AACJ,CAAC,CAAA"}

package/esm/LinearGCContentDisplay/stateModel.d.ts

@@ -130,10 +130,10 @@ export default function stateModelFactory(pluginManager: PluginManager, configSc
     reload(): void;
 } & {
     currBpPerPx: number;
+    scrollTop: number;
     message: string;
     featureIdUnderMouse: string | undefined;
     contextMenuFeature: import("@jbrowse/core/util").Feature | undefined;
-    scrollTop: number;
     estimatedRegionStatsP: Promise<import("@jbrowse/core/data_adapters/BaseAdapter").Stats> | undefined;
     estimatedRegionStats: import("@jbrowse/core/data_adapters/BaseAdapter").Stats | undefined;
 } & {
@@ -201,12 +201,11 @@ export default function stateModelFactory(pluginManager: PluginManager, configSc
         overrideHeight: number;
     }): Promise<JSX.Element>;
 } & {
-    statsReady: boolean;
     message: string | undefined;
     stats: {
         scoreMin: number;
         scoreMax: number;
-    };
+    } | undefined;
     statsFetchInProgress: AbortController | undefined;
 } & {
     updateStats(stats: {
@@ -247,14 +246,14 @@ export default function stateModelFactory(pluginManager: PluginManager, configSc
 } & {
     readonly filled: any;
     readonly summaryScoreModeSetting: any;
-    readonly domain: number[];
+    readonly domain: number[] | undefined;
     readonly needsScalebar: boolean;
     readonly scaleOpts: {
-        domain: number[];
+        domain: number[] | undefined;
         stats: {
             scoreMin: number;
             scoreMax: number;
-        };
+        } | undefined;
         autoscaleType: any;
         scaleType: any;
         inverted: any;
@@ -268,7 +267,7 @@ export default function stateModelFactory(pluginManager: PluginManager, configSc
         values: number[];
         format: (d: import("d3-scale").NumberValue) => string;
         position: import("d3-scale").ScaleLinear<number, number, never> | import("d3-scale").ScaleQuantize<number, never>;
-    };
+    } | undefined;
     readonly adapterCapabilities: string[];
 } & {
     renderProps(): any;

package/esm/LinearGCContentDisplay/stateModel.js

@@ -1,8 +1,7 @@
 import { getConf, } from '@jbrowse/core/configuration';
+import { linearWiggleDisplayModelFactory } from '@jbrowse/plugin-wiggle';
 import { types } from 'mobx-state-tree';
 export default function stateModelFactory(pluginManager, configSchema) {
-    const WigglePlugin = pluginManager.getPlugin('WigglePlugin');
-    const { linearWiggleDisplayModelFactory } = WigglePlugin.exports;
     return types
         .compose('LinearGCContentDisplay', linearWiggleDisplayModelFactory(pluginManager, configSchema), types.model({
         type: types.literal('LinearGCContentDisplay'),

package/esm/LinearGCContentDisplay/stateModel.js.map

@@ -1 +1 @@
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+{"version":3,"file":"stateModel.js","sourceRoot":"","sources":["../../src/LinearGCContentDisplay/stateModel.ts"],"names":[],"mappings":"AAAA,OAAO,EACL,OAAO,GAER,MAAM,6BAA6B,CAAA;AAEpC,OAAO,EAAE,+BAA+B,EAAE,MAAM,wBAAwB,CAAA;AACxE,OAAO,EAAE,KAAK,EAAE,MAAM,iBAAiB,CAAA;AAEvC,MAAM,CAAC,OAAO,UAAU,iBAAiB,CACvC,aAA4B,EAC5B,YAAwC;IAExC,OAAO,KAAK;SACT,OAAO,CACN,wBAAwB,EACxB,+BAA+B,CAAC,aAAa,EAAE,YAAY,CAAC,EAC5D,KAAK,CAAC,KAAK,CAAC;QACV,IAAI,EAAE,KAAK,CAAC,OAAO,CAAC,wBAAwB,CAAC;KAC9C,CAAC,CACH;SACA,KAAK,CAAC,IAAI,CAAC,EAAE;QACZ,MAAM,EAAE,WAAW,EAAE,gBAAgB,EAAE,GAAG,IAAI,CAAA;QAC9C,OAAO;YACL,WAAW;gBACT,MAAM,eAAe,GAAG,OAAO,CAAC,IAAI,CAAC,WAAW,EAAE,SAAS,CAAC,CAAA;gBAC5D,OAAO;oBACL,GAAG,gBAAgB,EAAE;oBACrB,aAAa,EAAE;wBACb,IAAI,EAAE,kBAAkB;wBACxB,eAAe;qBAChB;iBACF,CAAA;YACH,CAAC;SACF,CAAA;IACH,CAAC,CAAC,CAAA;AACN,CAAC"}

package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@jbrowse/plugin-gccontent",
-  "version": "2.2.2",
+  "version": "2.3.0",
   "description": "JBrowse 2 gccontent concepts",
   "keywords": [
     "jbrowse",
@@ -45,7 +45,6 @@
     "mobx": "^6.0.0",
     "mobx-react": "^7.0.0",
     "mobx-state-tree": "^5.0.0",
-    "prop-types": "^15.0.0",
     "react": ">=16.8.0",
     "rxjs": "^6.0.0"
   },
@@ -55,5 +54,5 @@
   "distModule": "esm/index.js",
   "srcModule": "src/index.ts",
   "module": "esm/index.js",
-  "gitHead": "abbc00e8feedbc58de84a7a3e735ec0224909b29"
+  "gitHead": "a85b280a8af4d1a11e81ab42913f5f6049e6e580"
 }

package/src/GCContentAdapter/configSchema.ts

@@ -13,7 +13,10 @@ const GCContentAdapterF = (pluginManager: PluginManager) => {
       /**
        * #slot
        */
-      sequenceAdapter: pluginManager.pluggableConfigSchemaType('adapter'),
+      sequenceAdapter: {
+        type: 'frozen',
+        defaultValue: null,
+      },
     },
     { explicitlyTyped: true },
   )

package/src/GCContentAdapter/index.ts

@@ -8,11 +8,9 @@ export default (pluginManager: PluginManager) => {
     () =>
       new AdapterType({
         name: 'GCContentAdapter',
+        displayName: 'GC content adapter',
         adapterMetadata: {
-          category: null,
           hiddenFromGUI: true,
-          displayName: null,
-          description: null,
         },
         configSchema: configSchemaF(pluginManager),
         getAdapterClass: () =>

package/src/LinearGCContentDisplay/index.ts

@@ -1,5 +1,6 @@
+import { DisplayType } from '@jbrowse/core/pluggableElementTypes'
 import PluginManager from '@jbrowse/core/PluginManager'
-import { BaseLinearDisplayComponent } from '@jbrowse/plugin-linear-genome-view'
+import { LinearWiggleDisplayReactComponent } from '@jbrowse/plugin-wiggle'
 
 import configSchemaFactory from './config'
 import stateModelFactory from './stateModel'
@@ -8,13 +9,14 @@ export default (pluginManager: PluginManager) => {
   pluginManager.addDisplayType(() => {
     const configSchema = configSchemaFactory(pluginManager)
     const stateModel = stateModelFactory(pluginManager, configSchema)
-    return {
+    return new DisplayType({
       name: 'LinearGCContentDisplay',
       configSchema,
       stateModel,
+      displayName: 'GC content display',
       trackType: 'ReferenceSequenceTrack',
       viewType: 'LinearGenomeView',
-      ReactComponent: BaseLinearDisplayComponent,
-    }
+      ReactComponent: LinearWiggleDisplayReactComponent,
+    })
   })
 }

package/src/LinearGCContentDisplay/stateModel.ts

@@ -3,16 +3,13 @@ import {
   AnyConfigurationSchemaType,
 } from '@jbrowse/core/configuration'
 import PluginManager from '@jbrowse/core/PluginManager'
+import { linearWiggleDisplayModelFactory } from '@jbrowse/plugin-wiggle'
 import { types } from 'mobx-state-tree'
 
 export default function stateModelFactory(
   pluginManager: PluginManager,
   configSchema: AnyConfigurationSchemaType,
 ) {
-  const WigglePlugin = pluginManager.getPlugin(
-    'WigglePlugin',
-  ) as import('@jbrowse/plugin-wiggle').default
-  const { linearWiggleDisplayModelFactory } = WigglePlugin.exports
   return types
     .compose(
       'LinearGCContentDisplay',