@jbrowse/plugin-gccontent 2.2.1

package/dist/LinearGCContentDisplay/stateModel.d.ts

@@ -0,0 +1,305 @@
+/// <reference types="react" />
+import { AnyConfigurationSchemaType } from '@jbrowse/core/configuration';
+import PluginManager from '@jbrowse/core/PluginManager';
+export default function stateModelFactory(pluginManager: PluginManager, configSchema: AnyConfigurationSchemaType): import("mobx-state-tree").IModelType<{
+    id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
+    type: import("mobx-state-tree").ISimpleType<string>;
+    rpcDriverName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
+} & {
+    height: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<number>, [undefined]>;
+    blockState: import("mobx-state-tree").IMapType<import("mobx-state-tree").IModelType<{
+        key: import("mobx-state-tree").ISimpleType<string>;
+        region: import("mobx-state-tree").IModelType<{
+            refName: import("mobx-state-tree").ISimpleType<string>;
+            start: import("mobx-state-tree").ISimpleType<number>;
+            end: import("mobx-state-tree").ISimpleType<number>;
+            reversed: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<boolean>, [undefined]>;
+        } & {
+            assemblyName: import("mobx-state-tree").ISimpleType<string>;
+        }, {
+            setRefName(newRefName: string): void;
+        }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>;
+        reloadFlag: import("mobx-state-tree").IType<number | undefined, number, number>;
+        isLeftEndOfDisplayedRegion: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
+        isRightEndOfDisplayedRegion: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
+    }, {
+        renderInProgress: AbortController | undefined;
+        filled: boolean;
+        reactElement: import("react").ReactElement<any, string | import("react").JSXElementConstructor<any>> | undefined;
+        features: Map<string, import("@jbrowse/core/util").Feature> | undefined;
+        layout: any;
+        status: string;
+        error: unknown;
+        message: string | undefined;
+        maxHeightReached: boolean;
+        ReactComponent: ({ model, }: {
+            model: any;
+        }) => any;
+        renderProps: any;
+    } & {
+        doReload(): void;
+        afterAttach(): void;
+        setStatus(message: string): void;
+        setLoading(abortController: AbortController): void;
+        setMessage(messageText: string): void;
+        setRendered(props: {
+            reactElement: import("react").ReactElement<any, string | import("react").JSXElementConstructor<any>>;
+            features: Map<string, import("@jbrowse/core/util").Feature>;
+            layout: any;
+            maxHeightReached: boolean;
+            renderProps: any;
+        } | undefined): void;
+        setError(error: unknown): void;
+        reload(): void;
+        beforeDestroy(): void;
+    }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
+    userBpPerPxLimit: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
+    userByteSizeLimit: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
+} & {
+    type: import("mobx-state-tree").ISimpleType<"LinearWiggleDisplay">;
+    configuration: import("mobx-state-tree").ITypeUnion<any, any, any>;
+    selectedRendering: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
+    resolution: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<number>, [undefined]>;
+    fill: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<boolean>>;
+    minSize: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
+    color: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
+    posColor: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
+    negColor: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
+    summaryScoreMode: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
+    rendererTypeNameState: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
+    scale: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
+    autoscale: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
+    displayCrossHatches: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<boolean>>;
+    constraints: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").IModelType<{
+        max: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
+        min: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
+    }, {}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>, [undefined]>;
+} & {
+    type: import("mobx-state-tree").ISimpleType<"LinearGCContentDisplay">;
+}, {
+    rendererTypeName: string;
+    error: unknown;
+} & {
+    readonly RenderingComponent: import("react").FC<{
+        model: {
+            id: string;
+            type: string;
+            rpcDriverName: string | undefined;
+        } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
+            rendererTypeName: string;
+            error: unknown;
+        } & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
+            id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
+            type: import("mobx-state-tree").ISimpleType<string>;
+            rpcDriverName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
+        }, {
+            rendererTypeName: string;
+            error: unknown;
+        }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
+        onHorizontalScroll?: Function | undefined;
+        blockState?: Record<string, any> | undefined;
+    }>;
+    readonly DisplayBlurb: import("react").FC<{
+        model: {
+            id: string;
+            type: string;
+            rpcDriverName: string | undefined;
+        } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
+            rendererTypeName: string;
+            error: unknown;
+        } & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
+            id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
+            type: import("mobx-state-tree").ISimpleType<string>;
+            rpcDriverName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
+        }, {
+            rendererTypeName: string;
+            error: unknown;
+        }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
+    }> | null;
+    readonly adapterConfig: any;
+    readonly parentTrack: any;
+    renderProps(): any;
+    readonly rendererType: import("@jbrowse/core/pluggableElementTypes").RendererType;
+    readonly DisplayMessageComponent: import("react").FC<any> | undefined;
+    trackMenuItems(): import("@jbrowse/core/ui").MenuItem[];
+    readonly viewMenuActions: import("@jbrowse/core/ui").MenuItem[];
+    regionCannotBeRendered(): undefined;
+} & {
+    setError(error?: unknown): void;
+    setRpcDriverName(rpcDriverName: string): void;
+    reload(): void;
+} & {
+    currBpPerPx: number;
+    message: string;
+    featureIdUnderMouse: string | undefined;
+    contextMenuFeature: import("@jbrowse/core/util").Feature | undefined;
+    scrollTop: number;
+    estimatedRegionStatsP: Promise<import("@jbrowse/core/data_adapters/BaseAdapter").Stats> | undefined;
+    estimatedRegionStats: import("@jbrowse/core/data_adapters/BaseAdapter").Stats | undefined;
+} & {
+    readonly blockType: "dynamicBlocks" | "staticBlocks";
+    readonly blockDefinitions: import("@jbrowse/core/util/blockTypes").BlockSet;
+} & {
+    readonly renderDelay: number;
+    readonly TooltipComponent: import("react").FC<any>;
+    readonly selectedFeatureId: string | undefined;
+    readonly DisplayMessageComponent: import("react").FC<any> | undefined;
+} & {
+    readonly features: import("@jbrowse/core/util/compositeMap").default<string, import("@jbrowse/core/util").Feature>;
+    readonly featureUnderMouse: import("@jbrowse/core/util").Feature | undefined;
+    getFeatureOverlapping(blockKey: string, x: number, y: number): any;
+    getFeatureByID(blockKey: string, id: string): [number, number, number, number] | undefined;
+    searchFeatureByID(id: string): [number, number, number, number] | undefined;
+    readonly currentBytesRequested: number;
+    readonly currentFeatureScreenDensity: number;
+    readonly maxFeatureScreenDensity: any;
+    readonly estimatedStatsReady: boolean;
+    readonly maxAllowableBytes: number;
+} & {
+    setMessage(message: string): void;
+    afterAttach(): void;
+    estimateRegionsStats(regions: import("@jbrowse/core/util").Region[], opts: {
+        headers?: Record<string, string> | undefined;
+        signal?: AbortSignal | undefined;
+        filters?: string[] | undefined;
+    }): Promise<{}>;
+    setRegionStatsP(p?: Promise<import("@jbrowse/core/data_adapters/BaseAdapter").Stats> | undefined): void;
+    setRegionStats(estimatedRegionStats?: import("@jbrowse/core/data_adapters/BaseAdapter").Stats | undefined): void;
+    clearRegionStats(): void;
+    setHeight(displayHeight: number): number;
+    resizeHeight(distance: number): number;
+    setScrollTop(scrollTop: number): void;
+    updateStatsLimit(stats: import("@jbrowse/core/data_adapters/BaseAdapter").Stats): void;
+    addBlock(key: string, block: import("@jbrowse/core/util/blockTypes").BaseBlock): void;
+    setCurrBpPerPx(n: number): void;
+    deleteBlock(key: string): void;
+    selectFeature(feature: import("@jbrowse/core/util").Feature): void;
+    clearFeatureSelection(): void;
+    setFeatureIdUnderMouse(feature: string | undefined): void;
+    reload(): void;
+    setContextMenuFeature(feature?: import("@jbrowse/core/util").Feature | undefined): void;
+} & {
+    readonly regionTooLarge: boolean;
+    readonly regionTooLargeReason: string;
+} & {
+    reload(): Promise<void>;
+    afterAttach(): void;
+} & {
+    regionCannotBeRenderedText(_region: import("@jbrowse/core/util").Region): "" | "Force load to see features";
+    regionCannotBeRendered(_region: import("@jbrowse/core/util").Region): JSX.Element | null;
+    trackMenuItems(): import("@jbrowse/core/ui").MenuItem[];
+    contextMenuItems(): {
+        label: string;
+        icon: import("@mui/material/OverridableComponent").OverridableComponent<import("@mui/material").SvgIconTypeMap<{}, "svg">> & {
+            muiName: string;
+        };
+        onClick: () => void;
+    }[];
+    renderProps(): any;
+} & {
+    renderSvg(opts: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView").ExportSvgOptions & {
+        overrideHeight: number;
+    }): Promise<JSX.Element>;
+} & {
+    statsReady: boolean;
+    message: string | undefined;
+    stats: {
+        scoreMin: number;
+        scoreMax: number;
+    };
+    statsFetchInProgress: AbortController | undefined;
+} & {
+    updateStats(stats: {
+        scoreMin: number;
+        scoreMax: number;
+    }): void;
+    setColor(color?: string | undefined): void;
+    setPosColor(color?: string | undefined): void;
+    setNegColor(color?: string | undefined): void;
+    setLoading(aborter: AbortController): void;
+    selectFeature(feature: import("@jbrowse/core/util").Feature): void;
+    setResolution(res: number): void;
+    setFill(fill: number): void;
+    toggleLogScale(): void;
+    setScaleType(scale?: string | undefined): void;
+    setSummaryScoreMode(val: string): void;
+    setAutoscale(val: string): void;
+    setMaxScore(val?: number | undefined): void;
+    setRendererType(val: string): void;
+    setMinScore(val?: number | undefined): void;
+    toggleCrossHatches(): void;
+    setCrossHatches(cross: boolean): void;
+} & {
+    readonly TooltipComponent: import("react").FC<{}>;
+    readonly adapterTypeName: any;
+    readonly rendererTypeNameSimple: any;
+    readonly rendererTypeName: string;
+    readonly filters: undefined;
+    readonly scaleType: any;
+    readonly maxScore: any;
+    readonly minScore: any;
+} & {
+    readonly rendererConfig: {
+        [x: string]: any;
+    } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
+        setSubschema(slotName: string, data: unknown): any;
+    } & import("mobx-state-tree").IStateTreeNode<AnyConfigurationSchemaType>;
+} & {
+    readonly filled: any;
+    readonly summaryScoreModeSetting: any;
+    readonly domain: number[];
+    readonly needsScalebar: boolean;
+    readonly scaleOpts: {
+        domain: number[];
+        stats: {
+            scoreMin: number;
+            scoreMax: number;
+        };
+        autoscaleType: any;
+        scaleType: any;
+        inverted: any;
+    };
+    readonly canHaveFill: boolean;
+    readonly autoscaleType: any;
+    readonly displayCrossHatchesSetting: any;
+} & {
+    readonly ticks: {
+        range: number[];
+        values: number[];
+        format: (d: import("d3-scale").NumberValue) => string;
+        position: import("d3-scale").ScaleLinear<number, number, never> | import("d3-scale").ScaleQuantize<number, never>;
+    };
+    readonly adapterCapabilities: string[];
+} & {
+    renderProps(): any;
+    readonly hasResolution: boolean;
+    readonly hasGlobalStats: boolean;
+    readonly fillSetting: 0 | 1 | 2;
+} & {
+    trackMenuItems(): (import("@jbrowse/core/ui").MenuDivider | import("@jbrowse/core/ui").MenuSubHeader | import("@jbrowse/core/ui").NormalMenuItem | import("@jbrowse/core/ui").CheckboxMenuItem | import("@jbrowse/core/ui").RadioMenuItem | import("@jbrowse/core/ui").SubMenuItem | {
+        label: string;
+        subMenu: {
+            label: string;
+            type: string;
+            checked: boolean;
+            onClick: () => void;
+        }[];
+        type?: undefined;
+        checked?: undefined;
+        onClick?: undefined;
+    } | {
+        type: string;
+        label: string;
+        checked: any;
+        onClick: () => void;
+        subMenu?: undefined;
+    })[];
+} & {
+    reload(): Promise<void>;
+    afterAttach(): void;
+    renderSvg(opts: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView").ExportSvgOptions & {
+        overrideHeight: number;
+    }): Promise<JSX.Element>;
+} & {
+    renderProps(): any;
+}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>;

package/dist/LinearGCContentDisplay/stateModel.js

@@ -0,0 +1,29 @@
+"use strict";
+Object.defineProperty(exports, "__esModule", { value: true });
+const configuration_1 = require("@jbrowse/core/configuration");
+const mobx_state_tree_1 = require("mobx-state-tree");
+function stateModelFactory(pluginManager, configSchema) {
+    const WigglePlugin = pluginManager.getPlugin('WigglePlugin');
+    const { linearWiggleDisplayModelFactory } = WigglePlugin.exports;
+    return mobx_state_tree_1.types
+        .compose('LinearGCContentDisplay', linearWiggleDisplayModelFactory(pluginManager, configSchema), mobx_state_tree_1.types.model({
+        type: mobx_state_tree_1.types.literal('LinearGCContentDisplay'),
+    }))
+        .views(self => {
+        const { renderProps: superRenderProps } = self;
+        return {
+            renderProps() {
+                const sequenceAdapter = (0, configuration_1.getConf)(self.parentTrack, 'adapter');
+                return {
+                    ...superRenderProps(),
+                    adapterConfig: {
+                        type: 'GCContentAdapter',
+                        sequenceAdapter,
+                    },
+                };
+            },
+        };
+    });
+}
+exports.default = stateModelFactory;
+//# sourceMappingURL=stateModel.js.map

package/dist/LinearGCContentDisplay/stateModel.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"stateModel.js","sourceRoot":"","sources":["../../src/LinearGCContentDisplay/stateModel.ts"],"names":[],"mappings":";;AAAA,+DAGoC;AAEpC,qDAAuC;AAEvC,SAAwB,iBAAiB,CACvC,aAA4B,EAC5B,YAAwC;IAExC,MAAM,YAAY,GAAG,aAAa,CAAC,SAAS,CAC1C,cAAc,CAC6B,CAAA;IAC7C,MAAM,EAAE,+BAA+B,EAAE,GAAG,YAAY,CAAC,OAAO,CAAA;IAChE,OAAO,uBAAK;SACT,OAAO,CACN,wBAAwB,EACxB,+BAA+B,CAAC,aAAa,EAAE,YAAY,CAAC,EAC5D,uBAAK,CAAC,KAAK,CAAC;QACV,IAAI,EAAE,uBAAK,CAAC,OAAO,CAAC,wBAAwB,CAAC;KAC9C,CAAC,CACH;SACA,KAAK,CAAC,IAAI,CAAC,EAAE;QACZ,MAAM,EAAE,WAAW,EAAE,gBAAgB,EAAE,GAAG,IAAI,CAAA;QAC9C,OAAO;YACL,WAAW;gBACT,MAAM,eAAe,GAAG,IAAA,uBAAO,EAAC,IAAI,CAAC,WAAW,EAAE,SAAS,CAAC,CAAA;gBAC5D,OAAO;oBACL,GAAG,gBAAgB,EAAE;oBACrB,aAAa,EAAE;wBACb,IAAI,EAAE,kBAAkB;wBACxB,eAAe;qBAChB;iBACF,CAAA;YACH,CAAC;SACF,CAAA;IACH,CAAC,CAAC,CAAA;AACN,CAAC;AA/BD,oCA+BC"}

package/dist/index.d.ts

@@ -0,0 +1,6 @@
+import Plugin from '@jbrowse/core/Plugin';
+import PluginManager from '@jbrowse/core/PluginManager';
+export default class GCContentPlugin extends Plugin {
+    name: string;
+    install(pluginManager: PluginManager): void;
+}

package/dist/index.js

@@ -0,0 +1,21 @@
+"use strict";
+var __importDefault = (this && this.__importDefault) || function (mod) {
+    return (mod && mod.__esModule) ? mod : { "default": mod };
+};
+Object.defineProperty(exports, "__esModule", { value: true });
+const Plugin_1 = __importDefault(require("@jbrowse/core/Plugin"));
+// locals
+const GCContentAdapter_1 = __importDefault(require("./GCContentAdapter"));
+const LinearGCContentDisplay_1 = __importDefault(require("./LinearGCContentDisplay"));
+class GCContentPlugin extends Plugin_1.default {
+    constructor() {
+        super(...arguments);
+        this.name = 'GCContentPlugin';
+    }
+    install(pluginManager) {
+        (0, GCContentAdapter_1.default)(pluginManager);
+        (0, LinearGCContentDisplay_1.default)(pluginManager);
+    }
+}
+exports.default = GCContentPlugin;
+//# sourceMappingURL=index.js.map

package/dist/index.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"index.js","sourceRoot":"","sources":["../src/index.ts"],"names":[],"mappings":";;;;;AAAA,kEAAyC;AAGzC,SAAS;AACT,0EAAkD;AAClD,sFAA8D;AAE9D,MAAqB,eAAgB,SAAQ,gBAAM;IAAnD;;QACE,SAAI,GAAG,iBAAiB,CAAA;IAM1B,CAAC;IAJC,OAAO,CAAC,aAA4B;QAClC,IAAA,0BAAiB,EAAC,aAAa,CAAC,CAAA;QAChC,IAAA,gCAAuB,EAAC,aAAa,CAAC,CAAA;IACxC,CAAC;CACF;AAPD,kCAOC"}

package/esm/GCContentAdapter/GCContentAdapter.d.ts

@@ -0,0 +1,17 @@
+import { BaseFeatureDataAdapter, BaseOptions } from '@jbrowse/core/data_adapters/BaseAdapter';
+import { Feature, Region } from '@jbrowse/core/util';
+export default class extends BaseFeatureDataAdapter {
+    private windowSize;
+    private windowDelta;
+    private gcMode;
+    static capabilities: string[];
+    configure(): Promise<BaseFeatureDataAdapter>;
+    getRefNames(): Promise<string[]>;
+    getFeatures(query: Region, opts: BaseOptions): import("rxjs").Observable<Feature>;
+    /**
+     * called to provide a hint that data tied to a certain region
+     * will not be needed for the forseeable future and can be purged
+     * from caches, etc
+     */
+    freeResources(): void;
+}

package/esm/GCContentAdapter/GCContentAdapter.js

@@ -0,0 +1,86 @@
+import { BaseFeatureDataAdapter, } from '@jbrowse/core/data_adapters/BaseAdapter';
+import { ObservableCreate } from '@jbrowse/core/util/rxjs';
+import { SimpleFeature } from '@jbrowse/core/util';
+import { toArray } from 'rxjs/operators';
+export default class default_1 extends BaseFeatureDataAdapter {
+    constructor() {
+        super(...arguments);
+        this.windowSize = 1000;
+        this.windowDelta = 1000;
+        this.gcMode = 'content';
+    }
+    async configure() {
+        var _a;
+        const adapter = await ((_a = this.getSubAdapter) === null || _a === void 0 ? void 0 : _a.call(this, this.getConf('sequenceAdapter')));
+        if (!adapter) {
+            throw new Error('Error getting subadapter');
+        }
+        return adapter.dataAdapter;
+    }
+    async getRefNames() {
+        const adapter = await this.configure();
+        return adapter.getRefNames();
+    }
+    getFeatures(query, opts) {
+        return ObservableCreate(async (observer) => {
+            var _a;
+            const sequenceAdapter = await this.configure();
+            const hw = this.windowSize === 1 ? 1 : this.windowSize / 2; // Half the window size
+            const f = this.windowSize === 1;
+            let { start: queryStart, end: queryEnd } = query;
+            queryStart = Math.max(0, queryStart - hw);
+            queryEnd += hw;
+            if (queryEnd < 0 || queryStart > queryEnd) {
+                observer.complete();
+                return;
+            }
+            const ret = sequenceAdapter.getFeatures({
+                ...query,
+                start: queryStart,
+                end: queryEnd,
+            }, opts);
+            const feats = await ret.pipe(toArray()).toPromise();
+            const residues = ((_a = feats[0]) === null || _a === void 0 ? void 0 : _a.get('seq')) || '';
+            for (let i = hw; i < residues.length - hw; i += this.windowDelta) {
+                const r = f ? residues[i] : residues.slice(i - hw, i + hw);
+                let nc = 0;
+                let ng = 0;
+                let len = 0;
+                for (let j = 0; j < r.length; j++) {
+                    if (r[j] === 'c' || r[j] === 'C') {
+                        nc++;
+                    }
+                    else if (r[j] === 'g' || r[j] === 'G') {
+                        ng++;
+                    }
+                    if (r[j] !== 'N') {
+                        len++;
+                    }
+                }
+                const pos = queryStart;
+                let score;
+                if (this.gcMode === 'content') {
+                    score = (ng + nc) / (len || 1);
+                }
+                else if (this.gcMode === 'skew') {
+                    score = (ng - nc) / (ng + nc || 1);
+                }
+                observer.next(new SimpleFeature({
+                    uniqueId: `${this.id}_${pos + i}`,
+                    start: pos + i,
+                    end: pos + i + this.windowDelta,
+                    score,
+                }));
+            }
+            observer.complete();
+        });
+    }
+    /**
+     * called to provide a hint that data tied to a certain region
+     * will not be needed for the forseeable future and can be purged
+     * from caches, etc
+     */
+    freeResources( /* { region } */) { }
+}
+default_1.capabilities = ['hasLocalStats'];
+//# sourceMappingURL=GCContentAdapter.js.map

package/esm/GCContentAdapter/GCContentAdapter.js.map

@@ -0,0 +1 @@
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package/esm/GCContentAdapter/configSchema.d.ts

@@ -0,0 +1,3 @@
+import PluginManager from '@jbrowse/core/PluginManager';
+declare const GCContentAdapterF: (pluginManager: PluginManager) => import("@jbrowse/core/configuration").AnyConfigurationSchemaType;
+export default GCContentAdapterF;

package/esm/GCContentAdapter/configSchema.js

@@ -0,0 +1,15 @@
+import { ConfigurationSchema } from '@jbrowse/core/configuration';
+/**
+ * #config GCContentAdapter
+ */
+function x() { } // eslint-disable-line @typescript-eslint/no-unused-vars
+const GCContentAdapterF = (pluginManager) => {
+    return ConfigurationSchema('GCContentAdapter', {
+        /**
+         * #slot
+         */
+        sequenceAdapter: pluginManager.pluggableConfigSchemaType('adapter'),
+    }, { explicitlyTyped: true });
+};
+export default GCContentAdapterF;
+//# sourceMappingURL=configSchema.js.map

package/esm/GCContentAdapter/configSchema.js.map

@@ -0,0 +1 @@
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package/esm/GCContentAdapter/index.d.ts

@@ -0,0 +1,3 @@
+import PluginManager from '@jbrowse/core/PluginManager';
+declare const _default: (pluginManager: PluginManager) => void;
+export default _default;

package/esm/GCContentAdapter/index.js

@@ -0,0 +1,16 @@
+import AdapterType from '@jbrowse/core/pluggableElementTypes/AdapterType';
+import configSchemaF from './configSchema';
+export default (pluginManager) => {
+    pluginManager.addAdapterType(() => new AdapterType({
+        name: 'GCContentAdapter',
+        adapterMetadata: {
+            category: null,
+            hiddenFromGUI: true,
+            displayName: null,
+            description: null,
+        },
+        configSchema: configSchemaF(pluginManager),
+        getAdapterClass: () => import('./GCContentAdapter').then(r => r.default),
+    }));
+};
+//# sourceMappingURL=index.js.map

package/esm/GCContentAdapter/index.js.map

@@ -0,0 +1 @@
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package/esm/LinearGCContentDisplay/config.d.ts

@@ -0,0 +1,2 @@
+import PluginManager from '@jbrowse/core/PluginManager';
+export default function WiggleConfigFactory(pluginManager: PluginManager): import("@jbrowse/core/configuration").AnyConfigurationSchemaType;

package/esm/LinearGCContentDisplay/config.js

@@ -0,0 +1,10 @@
+import { ConfigurationSchema } from '@jbrowse/core/configuration';
+/**
+ * #config LinearGCContentDisplay
+ */
+function x() { } // eslint-disable-line @typescript-eslint/no-unused-vars
+export default function WiggleConfigFactory(pluginManager) {
+    const baseConfiguration = pluginManager.getDisplayType('LinearWiggleDisplay').configSchema;
+    return ConfigurationSchema('LinearGCContentDisplay', {}, { baseConfiguration, explicitlyTyped: true });
+}
+//# sourceMappingURL=config.js.map

package/esm/LinearGCContentDisplay/config.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"config.js","sourceRoot":"","sources":["../../src/LinearGCContentDisplay/config.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,mBAAmB,EAAE,MAAM,6BAA6B,CAAA;AAGjE;;GAEG;AACH,SAAS,CAAC,KAAI,CAAC,CAAC,wDAAwD;AAExE,MAAM,CAAC,OAAO,UAAU,mBAAmB,CAAC,aAA4B;IACtE,MAAM,iBAAiB,GAAG,aAAa,CAAC,cAAc,CACpD,qBAAqB,CACtB,CAAC,YAAY,CAAA;IAEd,OAAO,mBAAmB,CACxB,wBAAwB,EACxB,EAAE,EACF,EAAE,iBAAiB,EAAE,eAAe,EAAE,IAAI,EAAE,CAC7C,CAAA;AACH,CAAC"}

package/esm/LinearGCContentDisplay/index.d.ts

@@ -0,0 +1,3 @@
+import PluginManager from '@jbrowse/core/PluginManager';
+declare const _default: (pluginManager: PluginManager) => void;
+export default _default;

package/esm/LinearGCContentDisplay/index.js

@@ -0,0 +1,18 @@
+import { BaseLinearDisplayComponent } from '@jbrowse/plugin-linear-genome-view';
+import configSchemaFactory from './config';
+import stateModelFactory from './stateModel';
+export default (pluginManager) => {
+    pluginManager.addDisplayType(() => {
+        const configSchema = configSchemaFactory(pluginManager);
+        const stateModel = stateModelFactory(pluginManager, configSchema);
+        return {
+            name: 'LinearGCContentDisplay',
+            configSchema,
+            stateModel,
+            trackType: 'ReferenceSequenceTrack',
+            viewType: 'LinearGenomeView',
+            ReactComponent: BaseLinearDisplayComponent,
+        };
+    });
+};
+//# sourceMappingURL=index.js.map

package/esm/LinearGCContentDisplay/index.js.map

@@ -0,0 +1 @@
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