@jbrowse/plugin-gccontent 2.11.0 → 2.11.2

package/dist/GCContentAdapter/GCContentAdapter.d.ts

@@ -1,6 +1,6 @@
 import { BaseFeatureDataAdapter, BaseOptions } from '@jbrowse/core/data_adapters/BaseAdapter';
 import { Feature, Region } from '@jbrowse/core/util';
-export default class extends BaseFeatureDataAdapter {
+export default class GCContentAdapter extends BaseFeatureDataAdapter {
     private gcMode;
     static capabilities: string[];
     configure(): Promise<BaseFeatureDataAdapter>;

package/dist/GCContentAdapter/GCContentAdapter.js

@@ -5,7 +5,7 @@ const rxjs_1 = require("rxjs");
 const rxjs_2 = require("@jbrowse/core/util/rxjs");
 const util_1 = require("@jbrowse/core/util");
 const operators_1 = require("rxjs/operators");
-class default_1 extends BaseAdapter_1.BaseFeatureDataAdapter {
+class GCContentAdapter extends BaseAdapter_1.BaseFeatureDataAdapter {
     constructor() {
         super(...arguments);
         this.gcMode = 'content';
@@ -70,6 +70,7 @@ class default_1 extends BaseAdapter_1.BaseFeatureDataAdapter {
                 }
                 observer.next(new util_1.SimpleFeature({
                     uniqueId: `${this.id}_${pos + i}`,
+                    refName: query.refName,
                     start: pos + i,
                     end: pos + i + windowDelta,
                     score,
@@ -85,5 +86,5 @@ class default_1 extends BaseAdapter_1.BaseFeatureDataAdapter {
      */
     freeResources( /* { region } */) { }
 }
-default_1.capabilities = ['hasLocalStats'];
-exports.default = default_1;
+GCContentAdapter.capabilities = ['hasLocalStats'];
+exports.default = GCContentAdapter;

package/dist/GCContentAdapter/index.d.ts

@@ -1,3 +1,2 @@
 import PluginManager from '@jbrowse/core/PluginManager';
-declare const _default: (pluginManager: PluginManager) => void;
-export default _default;
+export default function GCContentAdapterF(pluginManager: PluginManager): void;

package/dist/GCContentAdapter/index.js

@@ -28,7 +28,7 @@ var __importDefault = (this && this.__importDefault) || function (mod) {
 Object.defineProperty(exports, "__esModule", { value: true });
 const AdapterType_1 = __importDefault(require("@jbrowse/core/pluggableElementTypes/AdapterType"));
 const configSchema_1 = __importDefault(require("./configSchema"));
-exports.default = (pluginManager) => {
+function GCContentAdapterF(pluginManager) {
     pluginManager.addAdapterType(() => new AdapterType_1.default({
         name: 'GCContentAdapter',
         displayName: 'GC content adapter',
@@ -38,4 +38,5 @@ exports.default = (pluginManager) => {
         configSchema: (0, configSchema_1.default)(pluginManager),
         getAdapterClass: () => Promise.resolve().then(() => __importStar(require('./GCContentAdapter'))).then(r => r.default),
     }));
-};
+}
+exports.default = GCContentAdapterF;

package/dist/GCContentTrack/index.d.ts

@@ -1,3 +1,2 @@
 import PluginManager from '@jbrowse/core/PluginManager';
-declare const _default: (pm: PluginManager) => void;
-export default _default;
+export default function GCContentTrackF(pm: PluginManager): void;

package/dist/GCContentTrack/index.js

@@ -6,7 +6,7 @@ Object.defineProperty(exports, "__esModule", { value: true });
 const TrackType_1 = __importDefault(require("@jbrowse/core/pluggableElementTypes/TrackType"));
 const models_1 = require("@jbrowse/core/pluggableElementTypes/models");
 const configSchema_1 = __importDefault(require("./configSchema"));
-exports.default = (pm) => {
+function GCContentTrackF(pm) {
     pm.addTrackType(() => {
         const configSchema = (0, configSchema_1.default)(pm);
         return new TrackType_1.default({
@@ -16,4 +16,5 @@ exports.default = (pm) => {
             stateModel: (0, models_1.createBaseTrackModel)(pm, 'GCContentTrack', configSchema),
         });
     });
-};
+}
+exports.default = GCContentTrackF;

package/dist/LinearGCContentDisplay/index.d.ts

@@ -1,3 +1,2 @@
 import PluginManager from '@jbrowse/core/PluginManager';
-declare const _default: (pluginManager: PluginManager) => void;
-export default _default;
+export default function LinearGCContentDisplayF(pluginManager: PluginManager): void;

package/dist/LinearGCContentDisplay/index.js

@@ -9,7 +9,7 @@ const config1_1 = __importDefault(require("./config1"));
 const config2_1 = __importDefault(require("./config2"));
 const stateModel1_1 = __importDefault(require("./stateModel1"));
 const stateModel2_1 = __importDefault(require("./stateModel2"));
-exports.default = (pluginManager) => {
+function LinearGCContentDisplayF(pluginManager) {
     pluginManager.addDisplayType(() => {
         const configSchema = (0, config1_1.default)(pluginManager);
         const stateModel = (0, stateModel1_1.default)(pluginManager, configSchema);
@@ -36,4 +36,5 @@ exports.default = (pluginManager) => {
             ReactComponent: plugin_wiggle_1.LinearWiggleDisplayReactComponent,
         });
     });
-};
+}
+exports.default = LinearGCContentDisplayF;

package/dist/LinearGCContentDisplay/shared.d.ts

@@ -77,9 +77,7 @@ export default function SharedModelF(pluginManager: PluginManager, configSchema:
             defaultValue: number;
         };
         fetchSizeLimit: {
-            type: string; /**
-             * #property
-             */
+            type: string;
             defaultValue: number;
             description: string;
         };
@@ -94,6 +92,11 @@ export default function SharedModelF(pluginManager: PluginManager, configSchema:
             defaultValue: string;
             contextVariable: string[];
         };
+        jexlFilters: {
+            type: string;
+            description: string;
+            defaultValue: never[];
+        };
     }, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, "displayId">>;
 } & {
     selectedRendering: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
@@ -238,6 +241,7 @@ export default function SharedModelF(pluginManager: PluginManager, configSchema:
     addBlock(key: string, block: import("@jbrowse/core/util/blockTypes").BaseBlock): void;
     deleteBlock(key: string): void;
     selectFeature(feature: import("@jbrowse/core/util").Feature): void;
+    navToFeature(feature: import("@jbrowse/core/util").Feature): void;
     clearFeatureSelection(): void;
     setFeatureIdUnderMouse(feature?: string | undefined): void;
     setContextMenuFeature(feature?: import("@jbrowse/core/util").Feature | undefined): void;

package/dist/LinearGCContentDisplay/stateModel1.d.ts

@@ -91,6 +91,11 @@ export default function stateModelF(pluginManager: PluginManager, configSchema:
             defaultValue: string;
             contextVariable: string[];
         };
+        jexlFilters: {
+            type: string;
+            description: string;
+            defaultValue: never[];
+        };
     }, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, "displayId">>;
 } & {
     selectedRendering: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
@@ -229,6 +234,7 @@ export default function stateModelF(pluginManager: PluginManager, configSchema:
     addBlock(key: string, block: import("@jbrowse/core/util/blockTypes").BaseBlock): void;
     deleteBlock(key: string): void;
     selectFeature(feature: import("@jbrowse/core/util").Feature): void;
+    navToFeature(feature: import("@jbrowse/core/util").Feature): void;
     clearFeatureSelection(): void;
     setFeatureIdUnderMouse(feature?: string | undefined): void;
     setContextMenuFeature(feature?: import("@jbrowse/core/util").Feature | undefined): void;

package/dist/LinearGCContentDisplay/stateModel2.d.ts

@@ -96,6 +96,11 @@ export default function stateModelF(pluginManager: PluginManager, configSchema:
             defaultValue: string;
             contextVariable: string[];
         };
+        jexlFilters: {
+            type: string;
+            description: string;
+            defaultValue: never[];
+        };
     }, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, "displayId">>;
 } & {
     selectedRendering: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
@@ -234,6 +239,7 @@ export default function stateModelF(pluginManager: PluginManager, configSchema:
     addBlock(key: string, block: import("@jbrowse/core/util/blockTypes").BaseBlock): void;
     deleteBlock(key: string): void;
     selectFeature(feature: import("@jbrowse/core/util").Feature): void;
+    navToFeature(feature: import("@jbrowse/core/util").Feature): void;
     clearFeatureSelection(): void;
     setFeatureIdUnderMouse(feature?: string | undefined): void;
     setContextMenuFeature(feature?: import("@jbrowse/core/util").Feature | undefined): void;

package/esm/GCContentAdapter/GCContentAdapter.d.ts

@@ -1,6 +1,6 @@
 import { BaseFeatureDataAdapter, BaseOptions } from '@jbrowse/core/data_adapters/BaseAdapter';
 import { Feature, Region } from '@jbrowse/core/util';
-export default class extends BaseFeatureDataAdapter {
+export default class GCContentAdapter extends BaseFeatureDataAdapter {
     private gcMode;
     static capabilities: string[];
     configure(): Promise<BaseFeatureDataAdapter>;

package/esm/GCContentAdapter/GCContentAdapter.js

@@ -3,7 +3,7 @@ import { firstValueFrom } from 'rxjs';
 import { ObservableCreate } from '@jbrowse/core/util/rxjs';
 import { SimpleFeature } from '@jbrowse/core/util';
 import { toArray } from 'rxjs/operators';
-class default_1 extends BaseFeatureDataAdapter {
+class GCContentAdapter extends BaseFeatureDataAdapter {
     constructor() {
         super(...arguments);
         this.gcMode = 'content';
@@ -68,6 +68,7 @@ class default_1 extends BaseFeatureDataAdapter {
                 }
                 observer.next(new SimpleFeature({
                     uniqueId: `${this.id}_${pos + i}`,
+                    refName: query.refName,
                     start: pos + i,
                     end: pos + i + windowDelta,
                     score,
@@ -83,5 +84,5 @@ class default_1 extends BaseFeatureDataAdapter {
      */
     freeResources( /* { region } */) { }
 }
-default_1.capabilities = ['hasLocalStats'];
-export default default_1;
+GCContentAdapter.capabilities = ['hasLocalStats'];
+export default GCContentAdapter;

package/esm/GCContentAdapter/index.d.ts

@@ -1,3 +1,2 @@
 import PluginManager from '@jbrowse/core/PluginManager';
-declare const _default: (pluginManager: PluginManager) => void;
-export default _default;
+export default function GCContentAdapterF(pluginManager: PluginManager): void;

package/esm/GCContentAdapter/index.js

@@ -1,6 +1,6 @@
 import AdapterType from '@jbrowse/core/pluggableElementTypes/AdapterType';
 import configSchemaF from './configSchema';
-export default (pluginManager) => {
+export default function GCContentAdapterF(pluginManager) {
     pluginManager.addAdapterType(() => new AdapterType({
         name: 'GCContentAdapter',
         displayName: 'GC content adapter',
@@ -10,4 +10,4 @@ export default (pluginManager) => {
         configSchema: configSchemaF(pluginManager),
         getAdapterClass: () => import('./GCContentAdapter').then(r => r.default),
     }));
-};
+}

package/esm/GCContentTrack/index.d.ts

@@ -1,3 +1,2 @@
 import PluginManager from '@jbrowse/core/PluginManager';
-declare const _default: (pm: PluginManager) => void;
-export default _default;
+export default function GCContentTrackF(pm: PluginManager): void;

package/esm/GCContentTrack/index.js

@@ -1,7 +1,7 @@
 import TrackType from '@jbrowse/core/pluggableElementTypes/TrackType';
 import { createBaseTrackModel } from '@jbrowse/core/pluggableElementTypes/models';
 import configSchemaF from './configSchema';
-export default (pm) => {
+export default function GCContentTrackF(pm) {
     pm.addTrackType(() => {
         const configSchema = configSchemaF(pm);
         return new TrackType({
@@ -11,4 +11,4 @@ export default (pm) => {
             stateModel: createBaseTrackModel(pm, 'GCContentTrack', configSchema),
         });
     });
-};
+}

package/esm/LinearGCContentDisplay/index.d.ts

@@ -1,3 +1,2 @@
 import PluginManager from '@jbrowse/core/PluginManager';
-declare const _default: (pluginManager: PluginManager) => void;
-export default _default;
+export default function LinearGCContentDisplayF(pluginManager: PluginManager): void;

package/esm/LinearGCContentDisplay/index.js

@@ -4,7 +4,7 @@ import configSchemaFactory1 from './config1';
 import configSchemaFactory2 from './config2';
 import stateModelF1 from './stateModel1';
 import stateModelF2 from './stateModel2';
-export default (pluginManager) => {
+export default function LinearGCContentDisplayF(pluginManager) {
     pluginManager.addDisplayType(() => {
         const configSchema = configSchemaFactory1(pluginManager);
         const stateModel = stateModelF1(pluginManager, configSchema);
@@ -31,4 +31,4 @@ export default (pluginManager) => {
             ReactComponent: LinearWiggleDisplayReactComponent,
         });
     });
-};
+}

package/esm/LinearGCContentDisplay/shared.d.ts

@@ -77,9 +77,7 @@ export default function SharedModelF(pluginManager: PluginManager, configSchema:
             defaultValue: number;
         };
         fetchSizeLimit: {
-            type: string; /**
-             * #property
-             */
+            type: string;
             defaultValue: number;
             description: string;
         };
@@ -94,6 +92,11 @@ export default function SharedModelF(pluginManager: PluginManager, configSchema:
             defaultValue: string;
             contextVariable: string[];
         };
+        jexlFilters: {
+            type: string;
+            description: string;
+            defaultValue: never[];
+        };
     }, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, "displayId">>;
 } & {
     selectedRendering: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
@@ -238,6 +241,7 @@ export default function SharedModelF(pluginManager: PluginManager, configSchema:
     addBlock(key: string, block: import("@jbrowse/core/util/blockTypes").BaseBlock): void;
     deleteBlock(key: string): void;
     selectFeature(feature: import("@jbrowse/core/util").Feature): void;
+    navToFeature(feature: import("@jbrowse/core/util").Feature): void;
     clearFeatureSelection(): void;
     setFeatureIdUnderMouse(feature?: string | undefined): void;
     setContextMenuFeature(feature?: import("@jbrowse/core/util").Feature | undefined): void;

package/esm/LinearGCContentDisplay/stateModel1.d.ts

@@ -91,6 +91,11 @@ export default function stateModelF(pluginManager: PluginManager, configSchema:
             defaultValue: string;
             contextVariable: string[];
         };
+        jexlFilters: {
+            type: string;
+            description: string;
+            defaultValue: never[];
+        };
     }, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, "displayId">>;
 } & {
     selectedRendering: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
@@ -229,6 +234,7 @@ export default function stateModelF(pluginManager: PluginManager, configSchema:
     addBlock(key: string, block: import("@jbrowse/core/util/blockTypes").BaseBlock): void;
     deleteBlock(key: string): void;
     selectFeature(feature: import("@jbrowse/core/util").Feature): void;
+    navToFeature(feature: import("@jbrowse/core/util").Feature): void;
     clearFeatureSelection(): void;
     setFeatureIdUnderMouse(feature?: string | undefined): void;
     setContextMenuFeature(feature?: import("@jbrowse/core/util").Feature | undefined): void;

package/esm/LinearGCContentDisplay/stateModel2.d.ts

@@ -96,6 +96,11 @@ export default function stateModelF(pluginManager: PluginManager, configSchema:
             defaultValue: string;
             contextVariable: string[];
         };
+        jexlFilters: {
+            type: string;
+            description: string;
+            defaultValue: never[];
+        };
     }, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, "displayId">>;
 } & {
     selectedRendering: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
@@ -234,6 +239,7 @@ export default function stateModelF(pluginManager: PluginManager, configSchema:
     addBlock(key: string, block: import("@jbrowse/core/util/blockTypes").BaseBlock): void;
     deleteBlock(key: string): void;
     selectFeature(feature: import("@jbrowse/core/util").Feature): void;
+    navToFeature(feature: import("@jbrowse/core/util").Feature): void;
     clearFeatureSelection(): void;
     setFeatureIdUnderMouse(feature?: string | undefined): void;
     setContextMenuFeature(feature?: import("@jbrowse/core/util").Feature | undefined): void;

package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@jbrowse/plugin-gccontent",
-  "version": "2.11.0",
+  "version": "2.11.2",
   "description": "JBrowse 2 gccontent concepts",
   "keywords": [
     "jbrowse",
@@ -53,5 +53,5 @@
   "distModule": "esm/index.js",
   "srcModule": "src/index.ts",
   "module": "esm/index.js",
-  "gitHead": "3d43a820b9274a6160aa4dc15616147f390d9094"
+  "gitHead": "511048cb6965f0bf624c96de244e7fd47fce17d6"
 }