@jbrowse/plugin-gccontent 2.10.3 → 2.11.1
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/dist/GCContentAdapter/GCContentAdapter.d.ts +1 -1
- package/dist/GCContentAdapter/GCContentAdapter.js +4 -3
- package/dist/GCContentAdapter/index.d.ts +1 -2
- package/dist/GCContentAdapter/index.js +3 -2
- package/dist/GCContentTrack/configSchema.d.ts +82 -0
- package/dist/GCContentTrack/configSchema.js +16 -0
- package/dist/GCContentTrack/index.d.ts +2 -0
- package/dist/GCContentTrack/index.js +20 -0
- package/dist/LinearGCContentDisplay/{config.d.ts → config1.d.ts} +1 -1
- package/dist/LinearGCContentDisplay/{config.js → config1.js} +2 -2
- package/dist/LinearGCContentDisplay/config2.d.ts +16 -0
- package/dist/LinearGCContentDisplay/config2.js +28 -0
- package/dist/LinearGCContentDisplay/index.d.ts +1 -2
- package/dist/LinearGCContentDisplay/index.js +22 -6
- package/{esm/LinearGCContentDisplay/stateModel.d.ts → dist/LinearGCContentDisplay/shared.d.ts} +12 -17
- package/dist/LinearGCContentDisplay/{stateModel.js → shared.js} +6 -9
- package/dist/LinearGCContentDisplay/stateModel1.d.ts +403 -0
- package/dist/LinearGCContentDisplay/stateModel1.js +19 -0
- package/dist/LinearGCContentDisplay/stateModel2.d.ts +408 -0
- package/dist/LinearGCContentDisplay/stateModel2.js +24 -0
- package/dist/index.js +2 -0
- package/esm/GCContentAdapter/GCContentAdapter.d.ts +1 -1
- package/esm/GCContentAdapter/GCContentAdapter.js +4 -3
- package/esm/GCContentAdapter/index.d.ts +1 -2
- package/esm/GCContentAdapter/index.js +2 -2
- package/esm/GCContentTrack/configSchema.d.ts +82 -0
- package/esm/GCContentTrack/configSchema.js +14 -0
- package/esm/GCContentTrack/index.d.ts +2 -0
- package/esm/GCContentTrack/index.js +14 -0
- package/esm/LinearGCContentDisplay/{config.d.ts → config1.d.ts} +1 -1
- package/esm/LinearGCContentDisplay/{config.js → config1.js} +1 -1
- package/esm/LinearGCContentDisplay/config2.d.ts +16 -0
- package/esm/LinearGCContentDisplay/config2.js +25 -0
- package/esm/LinearGCContentDisplay/index.d.ts +1 -2
- package/esm/LinearGCContentDisplay/index.js +21 -6
- package/{dist/LinearGCContentDisplay/stateModel.d.ts → esm/LinearGCContentDisplay/shared.d.ts} +12 -17
- package/esm/LinearGCContentDisplay/{stateModel.js → shared.js} +5 -8
- package/esm/LinearGCContentDisplay/stateModel1.d.ts +403 -0
- package/esm/LinearGCContentDisplay/stateModel1.js +13 -0
- package/esm/LinearGCContentDisplay/stateModel2.d.ts +408 -0
- package/esm/LinearGCContentDisplay/stateModel2.js +18 -0
- package/esm/index.js +2 -0
- package/package.json +2 -2
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@@ -0,0 +1,25 @@
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import { ConfigurationSchema } from '@jbrowse/core/configuration';
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/**
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* #config LinearGCContentTrackDisplay
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* #category display
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* extends LinearWiggleDisplay, used specifically for GCContentTrack
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*/
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export default function LinearGCContentTrackDisplayF(pluginManager) {
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return ConfigurationSchema('LinearGCContentTrackDisplay', {
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windowSize: {
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type: 'number',
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defaultValue: 100,
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},
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windowDelta: {
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type: 'number',
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defaultValue: 100,
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},
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}, {
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/**
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* #baseConfiguration
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*/
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baseConfiguration: pluginManager.getDisplayType('LinearWiggleDisplay')
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.configSchema,
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explicitlyTyped: true,
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});
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}
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import { DisplayType } from '@jbrowse/core/pluggableElementTypes';
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import { LinearWiggleDisplayReactComponent } from '@jbrowse/plugin-wiggle';
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import
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import
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import configSchemaFactory1 from './config1';
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import configSchemaFactory2 from './config2';
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import stateModelF1 from './stateModel1';
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import stateModelF2 from './stateModel2';
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export default function LinearGCContentDisplayF(pluginManager) {
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pluginManager.addDisplayType(() => {
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const configSchema =
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const stateModel =
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const configSchema = configSchemaFactory1(pluginManager);
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const stateModel = stateModelF1(pluginManager, configSchema);
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return new DisplayType({
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name: 'LinearGCContentDisplay',
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configSchema,
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ReactComponent: LinearWiggleDisplayReactComponent,
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});
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});
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-
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pluginManager.addDisplayType(() => {
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const configSchema = configSchemaFactory2(pluginManager);
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const stateModel = stateModelF2(pluginManager, configSchema);
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return new DisplayType({
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name: 'LinearGCContentTrackDisplay',
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configSchema,
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stateModel,
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displayName: 'GC content display',
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trackType: 'GCContentTrack',
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viewType: 'LinearGenomeView',
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ReactComponent: LinearWiggleDisplayReactComponent,
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});
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});
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}
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package/{dist/LinearGCContentDisplay/stateModel.d.ts → esm/LinearGCContentDisplay/shared.d.ts}
RENAMED
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import { AnyConfigurationSchemaType } from '@jbrowse/core/configuration';
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import PluginManager from '@jbrowse/core/PluginManager';
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/**
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* #stateModel
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* #stateModel SharedGCContentModel
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* #category display
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*
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* extends
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* - [LinearWiggleDisplay](../linearwiggledisplay)
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*/
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export default function
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export default function SharedModelF(pluginManager: PluginManager, configSchema: AnyConfigurationSchemaType): import("mobx-state-tree").IModelType<{
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id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
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type: import("mobx-state-tree").ISimpleType<string>;
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rpcDriverName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
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@@ -76,7 +77,9 @@ export default function stateModelFactory(pluginManager: PluginManager, configSc
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defaultValue: number;
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};
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fetchSizeLimit: {
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type: string;
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type: string; /**
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* #property
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*/
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defaultValue: number;
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description: string;
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};
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@@ -109,18 +112,10 @@ export default function stateModelFactory(pluginManager: PluginManager, configSc
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max: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
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min: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
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}, {}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>, [undefined]>;
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configuration: AnyConfigurationSchemaType;
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* #method
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* retrieves the sequence adapter from parent track, and puts it as a
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* subadapter on a GCContentAdapter
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*/
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configuration: AnyConfigurationSchemaType;
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} & {
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type: import("mobx-state-tree").ISimpleType<"LinearWiggleDisplay">;
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} & {
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/**
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* #property
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*/
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type: import("mobx-state-tree").ISimpleType<"LinearGCContentDisplay">;
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/**
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* #property
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*/
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@@ -138,13 +133,13 @@ export default function stateModelFactory(pluginManager: PluginManager, configSc
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model: {
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id: string;
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type: string;
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rpcDriverName: string | undefined;
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rpcDriverName: string | undefined; /**
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* #property
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*/
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} & import("mobx-state-tree/dist/internal").NonEmptyObject & {
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rendererTypeName: string;
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error: unknown;
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message: string | undefined;
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* #property
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*/
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message: string | undefined;
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} & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
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id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
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type: import("mobx-state-tree").ISimpleType<string>;
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@@ -5,17 +5,14 @@ import { types } from 'mobx-state-tree';
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import { lazy } from 'react';
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const EditGCContentParamsDialog = lazy(() => import('./components/EditGCContentParams'));
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/**
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* #stateModel
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* #stateModel SharedGCContentModel
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* #category display
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*
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* extends
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* - [LinearWiggleDisplay](../linearwiggledisplay)
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*/
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export default function
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export default function SharedModelF(pluginManager, configSchema) {
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return types
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.compose('
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* #property
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*/
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type: types.literal('LinearGCContentDisplay'),
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.compose('SharedGCContentModel', linearWiggleDisplayModelFactory(pluginManager, configSchema), types.model({
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* #property
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/// <reference types="react" />
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import { AnyConfigurationSchemaType } from '@jbrowse/core/configuration';
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import PluginManager from '@jbrowse/core/PluginManager';
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/**
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* #stateModel LinearGCContentDisplay
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* #category display
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* base model `SharedGCContentModel`
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*/
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export default function stateModelF(pluginManager: PluginManager, configSchema: AnyConfigurationSchemaType): import("mobx-state-tree").IModelType<{
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id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
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type: import("mobx-state-tree").ISimpleType<string>;
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rpcDriverName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
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} & {
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heightPreConfig: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
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} & {
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userBpPerPxLimit: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
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userByteSizeLimit: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
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} & {
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blockState: import("mobx-state-tree").IMapType<import("mobx-state-tree").IModelType<{
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key: import("mobx-state-tree").ISimpleType<string>;
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region: import("mobx-state-tree").IModelType<{
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refName: import("mobx-state-tree").ISimpleType<string>;
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start: import("mobx-state-tree").ISimpleType<number>;
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end: import("mobx-state-tree").ISimpleType<number>;
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reversed: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<boolean>, [undefined]>;
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} & {
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assemblyName: import("mobx-state-tree").ISimpleType<string>;
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}, {
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setRefName(newRefName: string): void;
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}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>;
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reloadFlag: import("mobx-state-tree").IType<number | undefined, number, number>;
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isLeftEndOfDisplayedRegion: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
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isRightEndOfDisplayedRegion: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
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}, {
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renderInProgress: AbortController | undefined;
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filled: boolean;
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reactElement: import("react").ReactElement<any, string | import("react").JSXElementConstructor<any>> | undefined;
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features: Map<string, import("@jbrowse/core/util").Feature> | undefined;
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layout: any;
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status: string;
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error: unknown;
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message: string | undefined;
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maxHeightReached: boolean;
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ReactComponent: ({ model, }: {
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model: {
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error?: unknown;
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reload: () => void;
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message: import("react").ReactNode;
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filled?: boolean | undefined;
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status?: string | undefined;
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reactElement?: import("react").ReactElement<any, string | import("react").JSXElementConstructor<any>> | undefined;
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};
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}) => import("react").JSX.Element | undefined;
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renderProps: any;
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} & {
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doReload(): void;
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afterAttach(): void;
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setStatus(message: string): void;
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setLoading(abortController: AbortController): void;
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setMessage(messageText: string): void;
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setRendered(props: {
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reactElement: import("react").ReactElement<any, string | import("react").JSXElementConstructor<any>>;
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features: Map<string, import("@jbrowse/core/util").Feature>;
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layout: any;
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maxHeightReached: boolean;
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renderProps: any;
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} | undefined): void;
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setError(error: unknown): void;
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reload(): void;
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beforeDestroy(): void;
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}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
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configuration: import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
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maxFeatureScreenDensity: {
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description: string;
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defaultValue: number;
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};
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fetchSizeLimit: {
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defaultValue: number;
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description: string;
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};
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height: {
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type: string;
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defaultValue: number;
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description: string;
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};
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mouseover: {
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description: string;
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defaultValue: string;
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contextVariable: string[];
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};
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}, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, "displayId">>;
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} & {
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selectedRendering: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
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resolution: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<number>, [undefined]>;
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fill: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<boolean>>;
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minSize: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
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color: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
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posColor: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
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negColor: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
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summaryScoreMode: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
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rendererTypeNameState: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
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scale: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
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autoscale: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
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displayCrossHatches: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<boolean>>;
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constraints: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").IModelType<{
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max: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
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min: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
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}, {}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>, [undefined]>;
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configuration: AnyConfigurationSchemaType;
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} & {
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type: import("mobx-state-tree").ISimpleType<"LinearWiggleDisplay">;
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} & {
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windowSize: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
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windowDelta: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
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} & {
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type: import("mobx-state-tree").ISimpleType<"LinearGCContentDisplay">;
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}, {
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rendererTypeName: string;
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error: unknown;
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message: string | undefined;
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} & {
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readonly RenderingComponent: import("react").FC<{
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model: {
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id: string;
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type: string;
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rpcDriverName: string | undefined;
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} & import("mobx-state-tree/dist/internal").NonEmptyObject & {
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rendererTypeName: string;
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error: unknown;
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message: string | undefined;
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} & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
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id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
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type: import("mobx-state-tree").ISimpleType<string>;
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rpcDriverName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
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}, {
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rendererTypeName: string;
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error: unknown;
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message: string | undefined;
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}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
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onHorizontalScroll?: Function | undefined;
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blockState?: Record<string, any> | undefined;
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}>;
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readonly DisplayBlurb: import("react").FC<{
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model: {
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id: string;
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type: string;
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rpcDriverName: string | undefined;
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} & import("mobx-state-tree/dist/internal").NonEmptyObject & {
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rendererTypeName: string;
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error: unknown;
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message: string | undefined;
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} & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
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id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
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type: import("mobx-state-tree").ISimpleType<string>;
|
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rpcDriverName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
|
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}, {
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rendererTypeName: string;
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error: unknown;
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message: string | undefined;
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}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
|
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|
+
}> | null;
|
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|
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readonly adapterConfig: any;
|
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|
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readonly parentTrack: any;
|
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|
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renderProps(): any;
|
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|
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readonly rendererType: import("@jbrowse/core/pluggableElementTypes").RendererType;
|
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|
+
readonly DisplayMessageComponent: import("react").FC<any> | undefined;
|
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|
+
trackMenuItems(): import("@jbrowse/core/ui").MenuItem[];
|
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|
+
readonly viewMenuActions: import("@jbrowse/core/ui").MenuItem[];
|
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|
+
regionCannotBeRendered(): null;
|
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173
|
+
} & {
|
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174
|
+
setMessage(arg?: string | undefined): void;
|
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|
+
setError(error?: unknown): void;
|
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|
+
setRpcDriverName(rpcDriverName: string): void;
|
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|
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reload(): void;
|
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178
|
+
} & {
|
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179
|
+
scrollTop: number;
|
|
180
|
+
} & {
|
|
181
|
+
readonly height: number;
|
|
182
|
+
} & {
|
|
183
|
+
setScrollTop(scrollTop: number): void;
|
|
184
|
+
setHeight(displayHeight: number): number;
|
|
185
|
+
resizeHeight(distance: number): number;
|
|
186
|
+
} & {
|
|
187
|
+
featureDensityStatsP: Promise<import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats> | undefined;
|
|
188
|
+
featureDensityStats: import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats | undefined;
|
|
189
|
+
currStatsBpPerPx: number;
|
|
190
|
+
} & {
|
|
191
|
+
readonly currentBytesRequested: number;
|
|
192
|
+
readonly currentFeatureScreenDensity: number;
|
|
193
|
+
readonly maxFeatureScreenDensity: any;
|
|
194
|
+
readonly featureDensityStatsReady: boolean;
|
|
195
|
+
readonly maxAllowableBytes: number;
|
|
196
|
+
} & {
|
|
197
|
+
afterAttach(): void;
|
|
198
|
+
} & {
|
|
199
|
+
setCurrStatsBpPerPx(n: number): void;
|
|
200
|
+
setFeatureDensityStatsLimit(stats?: import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats | undefined): void;
|
|
201
|
+
getFeatureDensityStats(): Promise<import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats>;
|
|
202
|
+
setFeatureDensityStatsP(arg: any): void;
|
|
203
|
+
setFeatureDensityStats(featureDensityStats?: import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats | undefined): void;
|
|
204
|
+
clearFeatureDensityStats(): void;
|
|
205
|
+
} & {
|
|
206
|
+
readonly regionTooLarge: boolean;
|
|
207
|
+
readonly regionTooLargeReason: string;
|
|
208
|
+
} & {
|
|
209
|
+
regionCannotBeRenderedText(_region: import("@jbrowse/core/util").Region): "" | "Force load to see features";
|
|
210
|
+
regionCannotBeRendered(_region: import("@jbrowse/core/util").Region): import("react").JSX.Element | null;
|
|
211
|
+
} & {
|
|
212
|
+
featureIdUnderMouse: string | undefined;
|
|
213
|
+
contextMenuFeature: import("@jbrowse/core/util").Feature | undefined;
|
|
214
|
+
} & {
|
|
215
|
+
readonly blockType: "dynamicBlocks" | "staticBlocks";
|
|
216
|
+
readonly blockDefinitions: import("@jbrowse/core/util/blockTypes").BlockSet;
|
|
217
|
+
} & {
|
|
218
|
+
readonly renderDelay: number;
|
|
219
|
+
readonly TooltipComponent: import("react").FC<any>;
|
|
220
|
+
readonly selectedFeatureId: string | undefined;
|
|
221
|
+
readonly DisplayMessageComponent: import("react").FC<any> | undefined;
|
|
222
|
+
} & {
|
|
223
|
+
readonly features: import("@jbrowse/core/util/compositeMap").default<string, import("@jbrowse/core/util").Feature>;
|
|
224
|
+
readonly featureUnderMouse: import("@jbrowse/core/util").Feature | undefined;
|
|
225
|
+
getFeatureOverlapping(blockKey: string, x: number, y: number): string | undefined;
|
|
226
|
+
getFeatureByID(blockKey: string, id: string): [number, number, number, number] | undefined;
|
|
227
|
+
searchFeatureByID(id: string): [number, number, number, number] | undefined;
|
|
228
|
+
} & {
|
|
229
|
+
addBlock(key: string, block: import("@jbrowse/core/util/blockTypes").BaseBlock): void;
|
|
230
|
+
deleteBlock(key: string): void;
|
|
231
|
+
selectFeature(feature: import("@jbrowse/core/util").Feature): void;
|
|
232
|
+
clearFeatureSelection(): void;
|
|
233
|
+
setFeatureIdUnderMouse(feature?: string | undefined): void;
|
|
234
|
+
setContextMenuFeature(feature?: import("@jbrowse/core/util").Feature | undefined): void;
|
|
235
|
+
} & {
|
|
236
|
+
reload(): Promise<void>;
|
|
237
|
+
} & {
|
|
238
|
+
trackMenuItems(): import("@jbrowse/core/ui").MenuItem[];
|
|
239
|
+
contextMenuItems(): import("@jbrowse/core/ui").MenuItem[];
|
|
240
|
+
renderProps(): any;
|
|
241
|
+
} & {
|
|
242
|
+
renderSvg(opts: import("@jbrowse/plugin-linear-genome-view").ExportSvgDisplayOptions): Promise<import("react").JSX.Element>;
|
|
243
|
+
afterAttach(): void;
|
|
244
|
+
} & {
|
|
245
|
+
message: string | undefined;
|
|
246
|
+
stats: {
|
|
247
|
+
scoreMin: number;
|
|
248
|
+
scoreMax: number;
|
|
249
|
+
} | undefined;
|
|
250
|
+
statsFetchInProgress: AbortController | undefined;
|
|
251
|
+
} & {
|
|
252
|
+
updateQuantitativeStats(stats: {
|
|
253
|
+
scoreMin: number;
|
|
254
|
+
scoreMax: number;
|
|
255
|
+
}): void;
|
|
256
|
+
setColor(color?: string | undefined): void;
|
|
257
|
+
setPosColor(color?: string | undefined): void;
|
|
258
|
+
setNegColor(color?: string | undefined): void;
|
|
259
|
+
setLoading(aborter: AbortController): void;
|
|
260
|
+
selectFeature(feature: import("@jbrowse/core/util").Feature): void;
|
|
261
|
+
setResolution(res: number): void;
|
|
262
|
+
setFill(fill: number): void;
|
|
263
|
+
toggleLogScale(): void;
|
|
264
|
+
setScaleType(scale?: string | undefined): void;
|
|
265
|
+
setSummaryScoreMode(val: string): void;
|
|
266
|
+
setAutoscale(val: string): void;
|
|
267
|
+
setMaxScore(val?: number | undefined): void;
|
|
268
|
+
setRendererType(val: string): void;
|
|
269
|
+
setMinScore(val?: number | undefined): void;
|
|
270
|
+
toggleCrossHatches(): void;
|
|
271
|
+
setCrossHatches(cross: boolean): void;
|
|
272
|
+
} & {
|
|
273
|
+
readonly adapterTypeName: any;
|
|
274
|
+
readonly rendererTypeNameSimple: any;
|
|
275
|
+
readonly filters: undefined;
|
|
276
|
+
readonly scaleType: any;
|
|
277
|
+
readonly maxScore: any;
|
|
278
|
+
readonly minScore: any;
|
|
279
|
+
} & {
|
|
280
|
+
readonly adapterCapabilities: string[];
|
|
281
|
+
readonly rendererConfig: {
|
|
282
|
+
[x: string]: any;
|
|
283
|
+
} & import("mobx-state-tree/dist/internal").NonEmptyObject & {
|
|
284
|
+
setSubschema(slotName: string, data: unknown): any;
|
|
285
|
+
} & import("mobx-state-tree").IStateTreeNode<AnyConfigurationSchemaType>;
|
|
286
|
+
readonly autoscaleType: any;
|
|
287
|
+
} & {
|
|
288
|
+
readonly domain: number[] | undefined;
|
|
289
|
+
} & {
|
|
290
|
+
readonly filled: boolean;
|
|
291
|
+
readonly summaryScoreModeSetting: string;
|
|
292
|
+
readonly scaleOpts: {
|
|
293
|
+
domain: number[] | undefined;
|
|
294
|
+
stats: {
|
|
295
|
+
scoreMin: number;
|
|
296
|
+
scoreMax: number;
|
|
297
|
+
} | undefined;
|
|
298
|
+
autoscaleType: any;
|
|
299
|
+
scaleType: any;
|
|
300
|
+
inverted: any;
|
|
301
|
+
};
|
|
302
|
+
readonly canHaveFill: boolean;
|
|
303
|
+
readonly displayCrossHatchesSetting: boolean;
|
|
304
|
+
readonly hasResolution: boolean;
|
|
305
|
+
readonly hasGlobalStats: boolean;
|
|
306
|
+
} & {
|
|
307
|
+
scoreTrackMenuItems(): ({
|
|
308
|
+
label: string;
|
|
309
|
+
subMenu: {
|
|
310
|
+
label: string;
|
|
311
|
+
onClick: () => void;
|
|
312
|
+
}[];
|
|
313
|
+
onClick?: undefined;
|
|
314
|
+
} | {
|
|
315
|
+
label: string;
|
|
316
|
+
subMenu: {
|
|
317
|
+
label: string;
|
|
318
|
+
type: string;
|
|
319
|
+
checked: boolean;
|
|
320
|
+
onClick: () => void;
|
|
321
|
+
}[];
|
|
322
|
+
onClick?: undefined;
|
|
323
|
+
} | {
|
|
324
|
+
label: string;
|
|
325
|
+
onClick: () => void;
|
|
326
|
+
subMenu?: undefined;
|
|
327
|
+
})[];
|
|
328
|
+
} & {
|
|
329
|
+
reload(): Promise<void>;
|
|
330
|
+
} & {
|
|
331
|
+
readonly TooltipComponent: import("react").FC<{}>;
|
|
332
|
+
readonly rendererTypeName: string;
|
|
333
|
+
} & {
|
|
334
|
+
readonly ticks: {
|
|
335
|
+
range: number[];
|
|
336
|
+
values: number[];
|
|
337
|
+
format: (d: import("d3-scale").NumberValue) => string;
|
|
338
|
+
position: import("d3-scale").ScaleLinear<number, number, never> | import("d3-scale").ScaleQuantize<number, never>;
|
|
339
|
+
} | undefined;
|
|
340
|
+
} & {
|
|
341
|
+
renderProps(): any;
|
|
342
|
+
readonly needsScalebar: boolean;
|
|
343
|
+
readonly fillSetting: 1 | 2 | 0;
|
|
344
|
+
} & {
|
|
345
|
+
trackMenuItems(): (import("@jbrowse/core/ui").MenuDivider | import("@jbrowse/core/ui").MenuSubHeader | import("@jbrowse/core/ui").NormalMenuItem | import("@jbrowse/core/ui").CheckboxMenuItem | import("@jbrowse/core/ui").RadioMenuItem | import("@jbrowse/core/ui").SubMenuItem | {
|
|
346
|
+
label: string;
|
|
347
|
+
subMenu: ({
|
|
348
|
+
label: string;
|
|
349
|
+
subMenu: {
|
|
350
|
+
label: string;
|
|
351
|
+
onClick: () => void;
|
|
352
|
+
}[];
|
|
353
|
+
onClick?: undefined;
|
|
354
|
+
} | {
|
|
355
|
+
label: string;
|
|
356
|
+
subMenu: {
|
|
357
|
+
label: string;
|
|
358
|
+
type: string;
|
|
359
|
+
checked: boolean;
|
|
360
|
+
onClick: () => void;
|
|
361
|
+
}[];
|
|
362
|
+
onClick?: undefined;
|
|
363
|
+
} | {
|
|
364
|
+
label: string;
|
|
365
|
+
onClick: () => void;
|
|
366
|
+
subMenu?: undefined;
|
|
367
|
+
})[];
|
|
368
|
+
type?: undefined;
|
|
369
|
+
checked?: undefined;
|
|
370
|
+
onClick?: undefined;
|
|
371
|
+
} | {
|
|
372
|
+
label: string;
|
|
373
|
+
subMenu: {
|
|
374
|
+
label: string;
|
|
375
|
+
type: string;
|
|
376
|
+
checked: boolean;
|
|
377
|
+
onClick: () => void;
|
|
378
|
+
}[];
|
|
379
|
+
type?: undefined;
|
|
380
|
+
checked?: undefined;
|
|
381
|
+
onClick?: undefined;
|
|
382
|
+
} | {
|
|
383
|
+
type: string;
|
|
384
|
+
label: string;
|
|
385
|
+
checked: boolean;
|
|
386
|
+
onClick: () => void;
|
|
387
|
+
subMenu?: undefined;
|
|
388
|
+
})[];
|
|
389
|
+
} & {
|
|
390
|
+
afterAttach(): void;
|
|
391
|
+
renderSvg(opts: import("@jbrowse/plugin-linear-genome-view").ExportSvgDisplayOptions): Promise<import("react").JSX.Element>;
|
|
392
|
+
} & {
|
|
393
|
+
setGCContentParams({ windowSize, windowDelta, }: {
|
|
394
|
+
windowSize: number;
|
|
395
|
+
windowDelta: number;
|
|
396
|
+
}): void;
|
|
397
|
+
} & {
|
|
398
|
+
readonly windowSizeSetting: any;
|
|
399
|
+
readonly windowDeltaSetting: any;
|
|
400
|
+
} & {
|
|
401
|
+
trackMenuItems(): import("@jbrowse/core/ui").MenuItem[];
|
|
402
|
+
renderProps(): any;
|
|
403
|
+
}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>;
|
|
@@ -0,0 +1,13 @@
|
|
|
1
|
+
import { types } from 'mobx-state-tree';
|
|
2
|
+
// locals
|
|
3
|
+
import SharedModelF from './shared';
|
|
4
|
+
/**
|
|
5
|
+
* #stateModel LinearGCContentDisplay
|
|
6
|
+
* #category display
|
|
7
|
+
* base model `SharedGCContentModel`
|
|
8
|
+
*/
|
|
9
|
+
export default function stateModelF(pluginManager, configSchema) {
|
|
10
|
+
return types.compose('LinearGCContentDisplay', SharedModelF(pluginManager, configSchema), types.model({
|
|
11
|
+
type: types.literal('LinearGCContentDisplay'),
|
|
12
|
+
}));
|
|
13
|
+
}
|