@jbrowse/plugin-dotplot-view 3.7.0 → 4.0.1

package/dist/DotplotView/model.d.ts

@@ -1,440 +0,0 @@
-import type React from 'react';
-import { TrackSelector as TrackSelectorIcon } from '@jbrowse/core/ui/Icons';
-import type { ImportFormSyntenyTrack } from './types';
-import type PluginManager from '@jbrowse/core/PluginManager';
-import type { Base1DViewModel } from '@jbrowse/core/util/Base1DViewModel';
-import type { Instance, SnapshotIn } from 'mobx-state-tree';
-type Coord = [number, number];
-export interface ExportSvgOptions {
-    rasterizeLayers?: boolean;
-    filename?: string;
-    Wrapper?: React.FC<{
-        children: React.ReactNode;
-    }>;
-    themeName?: string;
-}
-export default function stateModelFactory(pm: PluginManager): import("mobx-state-tree").IModelType<{
-    id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
-    displayName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
-    minimized: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
-} & {
-    id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
-    type: import("mobx-state-tree").ISimpleType<"DotplotView">;
-    height: import("mobx-state-tree").IType<number | undefined, number, number>;
-    borderSize: import("mobx-state-tree").IType<number | undefined, number, number>;
-    tickSize: import("mobx-state-tree").IType<number | undefined, number, number>;
-    vtextRotation: import("mobx-state-tree").IType<number | undefined, number, number>;
-    htextRotation: import("mobx-state-tree").IType<number | undefined, number, number>;
-    fontSize: import("mobx-state-tree").IType<number | undefined, number, number>;
-    trackSelectorType: import("mobx-state-tree").IType<string | undefined, string, string>;
-    assemblyNames: import("mobx-state-tree").IArrayType<import("mobx-state-tree").ISimpleType<string>>;
-    drawCigar: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
-    hview: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").IModelType<{
-        id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
-        displayedRegions: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").IType<import("@jbrowse/core/util").Region[], import("@jbrowse/core/util").Region[], import("@jbrowse/core/util").Region[]>, [undefined]>;
-        bpPerPx: import("mobx-state-tree").IType<number | undefined, number, number>;
-        offsetPx: import("mobx-state-tree").IType<number | undefined, number, number>;
-        interRegionPaddingWidth: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<number>, [undefined]>;
-        minimumBlockWidth: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<number>, [undefined]>;
-    }, {
-        features: undefined | import("@jbrowse/core/util").Feature[];
-        volatileWidth: number;
-    } & {
-        setDisplayedRegions(regions: import("@jbrowse/core/util").Region[]): void;
-        setBpPerPx(val: number): void;
-        setVolatileWidth(width: number): void;
-    } & {
-        readonly width: number;
-        readonly assemblyNames: string[];
-        readonly displayedRegionsTotalPx: number;
-        readonly maxOffset: number;
-        readonly minOffset: number;
-        readonly totalBp: number;
-    } & {
-        readonly dynamicBlocks: import("@jbrowse/core/util/blockTypes").BlockSet;
-        readonly staticBlocks: import("@jbrowse/core/util/blockTypes").BlockSet;
-        readonly currBp: number;
-    } & {
-        pxToBp(px: number): {
-            coord: number;
-            index: number;
-            refName: string;
-            oob: boolean;
-            assemblyName: string;
-            offset: number;
-            start: number;
-            end: number;
-            reversed?: boolean;
-        };
-        bpToPx({ refName, coord, regionNumber, }: {
-            refName: string;
-            coord: number;
-            regionNumber?: number;
-        }): number | undefined;
-    } & {
-        setFeatures(features: import("@jbrowse/core/util").Feature[]): void;
-        showAllRegions(): void;
-        zoomOut(): void;
-        zoomIn(): void;
-        zoomTo(bpPerPx: number, offset?: number): number;
-        scrollTo(offsetPx: number): number;
-        centerAt(coord: number, refName: string | undefined, regionNumber: number): void;
-        scroll(distance: number): number;
-    } & {
-        moveTo(start?: import("@jbrowse/core/util/Base1DUtils").BpOffset, end?: import("@jbrowse/core/util/Base1DUtils").BpOffset): void;
-    } & {
-        setScaleFactor(n: number): void;
-        center(): void;
-    } & {
-        readonly dynamicBlocks: import("@jbrowse/core/util/blockTypes").BlockSet;
-        readonly scaleFactor: number;
-        readonly maxBpPerPx: number;
-        readonly minBpPerPx: number;
-        readonly maxOffset: number;
-        readonly minOffset: number;
-    } & {
-        readonly width: any;
-    }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>, [undefined]>;
-    vview: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").IModelType<{
-        id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
-        displayedRegions: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").IType<import("@jbrowse/core/util").Region[], import("@jbrowse/core/util").Region[], import("@jbrowse/core/util").Region[]>, [undefined]>;
-        bpPerPx: import("mobx-state-tree").IType<number | undefined, number, number>;
-        offsetPx: import("mobx-state-tree").IType<number | undefined, number, number>;
-        interRegionPaddingWidth: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<number>, [undefined]>;
-        minimumBlockWidth: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<number>, [undefined]>;
-    }, {
-        features: undefined | import("@jbrowse/core/util").Feature[];
-        volatileWidth: number;
-    } & {
-        setDisplayedRegions(regions: import("@jbrowse/core/util").Region[]): void;
-        setBpPerPx(val: number): void;
-        setVolatileWidth(width: number): void;
-    } & {
-        readonly width: number;
-        readonly assemblyNames: string[];
-        readonly displayedRegionsTotalPx: number;
-        readonly maxOffset: number;
-        readonly minOffset: number;
-        readonly totalBp: number;
-    } & {
-        readonly dynamicBlocks: import("@jbrowse/core/util/blockTypes").BlockSet;
-        readonly staticBlocks: import("@jbrowse/core/util/blockTypes").BlockSet;
-        readonly currBp: number;
-    } & {
-        pxToBp(px: number): {
-            coord: number;
-            index: number;
-            refName: string;
-            oob: boolean;
-            assemblyName: string;
-            offset: number;
-            start: number;
-            end: number;
-            reversed?: boolean;
-        };
-        bpToPx({ refName, coord, regionNumber, }: {
-            refName: string;
-            coord: number;
-            regionNumber?: number;
-        }): number | undefined;
-    } & {
-        setFeatures(features: import("@jbrowse/core/util").Feature[]): void;
-        showAllRegions(): void;
-        zoomOut(): void;
-        zoomIn(): void;
-        zoomTo(bpPerPx: number, offset?: number): number;
-        scrollTo(offsetPx: number): number;
-        centerAt(coord: number, refName: string | undefined, regionNumber: number): void;
-        scroll(distance: number): number;
-    } & {
-        moveTo(start?: import("@jbrowse/core/util/Base1DUtils").BpOffset, end?: import("@jbrowse/core/util/Base1DUtils").BpOffset): void;
-    } & {
-        setScaleFactor(n: number): void;
-        center(): void;
-    } & {
-        readonly dynamicBlocks: import("@jbrowse/core/util/blockTypes").BlockSet;
-        readonly scaleFactor: number;
-        readonly maxBpPerPx: number;
-        readonly minBpPerPx: number;
-        readonly maxOffset: number;
-        readonly minOffset: number;
-    } & {
-        readonly width: any;
-    }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>, [undefined]>;
-    tracks: import("mobx-state-tree").IArrayType<import("mobx-state-tree").IModelType<{
-        id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
-        type: import("mobx-state-tree").ISimpleType<string>;
-        configuration: import("@jbrowse/core/configuration").AnyConfigurationSchemaType;
-        minimized: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
-        pinned: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
-        displays: import("mobx-state-tree").IArrayType<import("mobx-state-tree").IAnyType>;
-    }, {
-        readonly rpcSessionId: any;
-        readonly name: any;
-        readonly textSearchAdapter: any;
-        readonly adapterConfig: any;
-        readonly adapterType: import("@jbrowse/core/pluggableElementTypes").AdapterType;
-        readonly viewMenuActions: import("@jbrowse/core/ui").MenuItem[];
-        readonly canConfigure: boolean | ({
-            [x: string]: any;
-        } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
-            setSubschema(slotName: string, data: Record<string, unknown>): Record<string, unknown> | ({
-                [x: string]: any;
-            } & import("mobx-state-tree/dist/internal").NonEmptyObject & any & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>);
-        } & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>) | undefined;
-    } & {
-        setPinned(flag: boolean): void;
-        setMinimized(flag: boolean): void;
-        showDisplay(displayId: string, initialSnapshot?: {}): void;
-        hideDisplay(displayId: string): number;
-        replaceDisplay(oldId: string, newId: string, initialSnapshot?: {}): void;
-    } & {
-        trackMenuItems(): (import("@jbrowse/core/ui").MenuDivider | import("@jbrowse/core/ui").MenuSubHeader | import("@jbrowse/core/ui").NormalMenuItem | import("@jbrowse/core/ui").CheckboxMenuItem | import("@jbrowse/core/ui").RadioMenuItem | import("@jbrowse/core/ui").SubMenuItem | {
-            type: string;
-            label: string;
-            priority: number;
-            subMenu: {
-                type: string;
-                label: string;
-                checked: boolean;
-                onClick: () => void;
-            }[];
-        })[];
-    }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
-    viewTrackConfigs: import("mobx-state-tree").IArrayType<import("mobx-state-tree").IAnyModelType>;
-}, {
-    width: number;
-} & {
-    menuItems(): import("@jbrowse/core/ui").MenuItem[];
-} & {
-    setDisplayName(name: string): void;
-    setWidth(newWidth: number): void;
-    setMinimized(flag: boolean): void;
-} & {
-    volatileWidth: number | undefined;
-    volatileError: unknown;
-    cursorMode: string;
-    showPanButtons: boolean;
-    wheelMode: string;
-    borderX: number;
-    borderY: number;
-    importFormSyntenyTrackSelections: import("mobx").IObservableArray<ImportFormSyntenyTrack>;
-} & {
-    importFormRemoveRow(idx: number): void;
-    clearImportFormSyntenyTracks(): void;
-    setImportFormSyntenyTrack(arg: number, val: ImportFormSyntenyTrack): void;
-} & {
-    readonly width: number;
-} & {
-    readonly assemblyErrors: string;
-    readonly assembliesInitialized: boolean;
-} & {
-    readonly initialized: boolean;
-    readonly hticks: {
-        type: string;
-        base: number;
-        index: number;
-        refName: string;
-    }[];
-    readonly vticks: {
-        type: string;
-        base: number;
-        index: number;
-        refName: string;
-    }[];
-    readonly loading: boolean;
-    readonly viewWidth: number;
-    readonly viewHeight: number;
-    readonly views: ({
-        id: string;
-        displayedRegions: import("@jbrowse/core/util").Region[] & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").IType<import("@jbrowse/core/util").Region[], import("@jbrowse/core/util").Region[], import("@jbrowse/core/util").Region[]>, [undefined]>>;
-        bpPerPx: number;
-        offsetPx: number;
-        interRegionPaddingWidth: number;
-        minimumBlockWidth: number;
-    } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
-        features: undefined | import("@jbrowse/core/util").Feature[];
-        volatileWidth: number;
-    } & {
-        setDisplayedRegions(regions: import("@jbrowse/core/util").Region[]): void;
-        setBpPerPx(val: number): void;
-        setVolatileWidth(width: number): void;
-    } & {
-        readonly width: number;
-        readonly assemblyNames: string[];
-        readonly displayedRegionsTotalPx: number;
-        readonly maxOffset: number;
-        readonly minOffset: number;
-        readonly totalBp: number;
-    } & {
-        readonly dynamicBlocks: import("@jbrowse/core/util/blockTypes").BlockSet;
-        readonly staticBlocks: import("@jbrowse/core/util/blockTypes").BlockSet;
-        readonly currBp: number;
-    } & {
-        pxToBp(px: number): {
-            coord: number;
-            index: number;
-            refName: string;
-            oob: boolean;
-            assemblyName: string;
-            offset: number;
-            start: number;
-            end: number;
-            reversed?: boolean;
-        };
-        bpToPx({ refName, coord, regionNumber, }: {
-            refName: string;
-            coord: number;
-            regionNumber?: number;
-        }): number | undefined;
-    } & {
-        setFeatures(features: import("@jbrowse/core/util").Feature[]): void;
-        showAllRegions(): void;
-        zoomOut(): void;
-        zoomIn(): void;
-        zoomTo(bpPerPx: number, offset?: number): number;
-        scrollTo(offsetPx: number): number;
-        centerAt(coord: number, refName: string | undefined, regionNumber: number): void;
-        scroll(distance: number): number;
-    } & {
-        moveTo(start?: import("@jbrowse/core/util/Base1DUtils").BpOffset, end?: import("@jbrowse/core/util/Base1DUtils").BpOffset): void;
-    } & {
-        setScaleFactor(n: number): void;
-        center(): void;
-    } & {
-        readonly dynamicBlocks: import("@jbrowse/core/util/blockTypes").BlockSet;
-        readonly scaleFactor: number;
-        readonly maxBpPerPx: number;
-        readonly minBpPerPx: number;
-        readonly maxOffset: number;
-        readonly minOffset: number;
-    } & {
-        readonly width: any;
-    } & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").IModelType<{
-        id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
-        displayedRegions: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").IType<import("@jbrowse/core/util").Region[], import("@jbrowse/core/util").Region[], import("@jbrowse/core/util").Region[]>, [undefined]>;
-        bpPerPx: import("mobx-state-tree").IType<number | undefined, number, number>;
-        offsetPx: import("mobx-state-tree").IType<number | undefined, number, number>;
-        interRegionPaddingWidth: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<number>, [undefined]>;
-        minimumBlockWidth: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<number>, [undefined]>;
-    }, {
-        features: undefined | import("@jbrowse/core/util").Feature[];
-        volatileWidth: number;
-    } & {
-        setDisplayedRegions(regions: import("@jbrowse/core/util").Region[]): void;
-        setBpPerPx(val: number): void;
-        setVolatileWidth(width: number): void;
-    } & {
-        readonly width: number;
-        readonly assemblyNames: string[];
-        readonly displayedRegionsTotalPx: number;
-        readonly maxOffset: number;
-        readonly minOffset: number;
-        readonly totalBp: number;
-    } & {
-        readonly dynamicBlocks: import("@jbrowse/core/util/blockTypes").BlockSet;
-        readonly staticBlocks: import("@jbrowse/core/util/blockTypes").BlockSet;
-        readonly currBp: number;
-    } & {
-        pxToBp(px: number): {
-            coord: number;
-            index: number;
-            refName: string;
-            oob: boolean;
-            assemblyName: string;
-            offset: number;
-            start: number;
-            end: number;
-            reversed?: boolean;
-        };
-        bpToPx({ refName, coord, regionNumber, }: {
-            refName: string;
-            coord: number;
-            regionNumber?: number;
-        }): number | undefined;
-    } & {
-        setFeatures(features: import("@jbrowse/core/util").Feature[]): void;
-        showAllRegions(): void;
-        zoomOut(): void;
-        zoomIn(): void;
-        zoomTo(bpPerPx: number, offset?: number): number;
-        scrollTo(offsetPx: number): number;
-        centerAt(coord: number, refName: string | undefined, regionNumber: number): void;
-        scroll(distance: number): number;
-    } & {
-        moveTo(start?: import("@jbrowse/core/util/Base1DUtils").BpOffset, end?: import("@jbrowse/core/util/Base1DUtils").BpOffset): void;
-    } & {
-        setScaleFactor(n: number): void;
-        center(): void;
-    } & {
-        readonly dynamicBlocks: import("@jbrowse/core/util/blockTypes").BlockSet;
-        readonly scaleFactor: number;
-        readonly maxBpPerPx: number;
-        readonly minBpPerPx: number;
-        readonly maxOffset: number;
-        readonly minOffset: number;
-    } & {
-        readonly width: any;
-    }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>, [undefined]>>)[];
-    renderProps(): any;
-} & {
-    setShowPanButtons(flag: boolean): void;
-    setWheelMode(str: string): void;
-    setCursorMode(str: string): void;
-    setDrawCigar(flag: boolean): void;
-    clearView(): void;
-    setBorderX(n: number): void;
-    setBorderY(n: number): void;
-    setWidth(newWidth: number): number;
-    setHeight(newHeight: number): number;
-    setError(e: unknown): void;
-    zoomOut(): void;
-    zoomIn(): void;
-} & {
-    activateTrackSelector(): import("@jbrowse/core/util").Widget;
-    showTrack(trackId: string, initialSnapshot?: {}): void;
-    hideTrack(trackId: string): number;
-    toggleTrack(trackId: string): boolean;
-    setAssemblyNames(target: string, query: string): void;
-    setViews(arr: SnapshotIn<Base1DViewModel>[]): void;
-    getCoords(mousedown: Coord, mouseup: Coord): {
-        coord: number;
-        index: number;
-        refName: string;
-        oob: boolean;
-        assemblyName: string;
-        offset: number;
-        start: number;
-        end: number;
-        reversed?: boolean;
-    }[] | undefined;
-    zoomInToMouseCoords(mousedown: Coord, mouseup: Coord): void;
-    calculateBorders(): {
-        borderX: number;
-        borderY: number;
-    };
-    showAllRegions(): void;
-    onDotplotView(mousedown: Coord, mouseup: Coord): void;
-} & {
-    exportSvg(opts?: ExportSvgOptions): Promise<void>;
-    beforeDestroy(): void;
-    afterAttach(): void;
-    squareView(): void;
-    squareViewProportional(): void;
-} & {
-    menuItems(): ({
-        label: string;
-        icon: import("@mui/material/OverridableComponent").OverridableComponent<import("@mui/material").SvgIconTypeMap<{}, "svg">> & {
-            muiName: string;
-        };
-        onClick: () => void;
-    } | {
-        label: string;
-        onClick: () => import("@jbrowse/core/util").Widget;
-        icon: typeof TrackSelectorIcon;
-    })[];
-    readonly error: unknown;
-}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>;
-export type DotplotViewStateModel = ReturnType<typeof stateModelFactory>;
-export type DotplotViewModel = Instance<DotplotViewStateModel>;
-export { Dotplot1DView, type Dotplot1DViewModel } from './1dview';