@jbrowse/plugin-dotplot-view 3.6.5 → 4.0.0

package/esm/DotplotView/model.d.ts

@@ -1,9 +1,9 @@
 import type React from 'react';
 import { TrackSelector as TrackSelectorIcon } from '@jbrowse/core/ui/Icons';
-import type { ImportFormSyntenyTrack } from './types';
+import type { DotplotViewInit, ImportFormSyntenyTrack } from './types.ts';
 import type PluginManager from '@jbrowse/core/PluginManager';
 import type { Base1DViewModel } from '@jbrowse/core/util/Base1DViewModel';
-import type { Instance, SnapshotIn } from 'mobx-state-tree';
+import type { Instance, SnapshotIn } from '@jbrowse/mobx-state-tree';
 type Coord = [number, number];
 export interface ExportSvgOptions {
     rasterizeLayers?: boolean;
@@ -13,29 +13,29 @@ export interface ExportSvgOptions {
     }>;
     themeName?: string;
 }
-export default function stateModelFactory(pm: PluginManager): import("mobx-state-tree").IModelType<{
-    id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
-    displayName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
-    minimized: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
+export default function stateModelFactory(pm: PluginManager): import("@jbrowse/mobx-state-tree").IModelType<{
+    id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
+    displayName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
+    minimized: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
 } & {
-    id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
-    type: import("mobx-state-tree").ISimpleType<"DotplotView">;
-    height: import("mobx-state-tree").IType<number | undefined, number, number>;
-    borderSize: import("mobx-state-tree").IType<number | undefined, number, number>;
-    tickSize: import("mobx-state-tree").IType<number | undefined, number, number>;
-    vtextRotation: import("mobx-state-tree").IType<number | undefined, number, number>;
-    htextRotation: import("mobx-state-tree").IType<number | undefined, number, number>;
-    fontSize: import("mobx-state-tree").IType<number | undefined, number, number>;
-    trackSelectorType: import("mobx-state-tree").IType<string | undefined, string, string>;
-    assemblyNames: import("mobx-state-tree").IArrayType<import("mobx-state-tree").ISimpleType<string>>;
-    drawCigar: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
-    hview: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").IModelType<{
-        id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
-        displayedRegions: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").IType<import("@jbrowse/core/util").Region[], import("@jbrowse/core/util").Region[], import("@jbrowse/core/util").Region[]>, [undefined]>;
-        bpPerPx: import("mobx-state-tree").IType<number | undefined, number, number>;
-        offsetPx: import("mobx-state-tree").IType<number | undefined, number, number>;
-        interRegionPaddingWidth: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<number>, [undefined]>;
-        minimumBlockWidth: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<number>, [undefined]>;
+    id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
+    type: import("@jbrowse/mobx-state-tree").ISimpleType<"DotplotView">;
+    height: import("@jbrowse/mobx-state-tree").IType<number | undefined, number, number>;
+    borderSize: import("@jbrowse/mobx-state-tree").IType<number | undefined, number, number>;
+    tickSize: import("@jbrowse/mobx-state-tree").IType<number | undefined, number, number>;
+    vtextRotation: import("@jbrowse/mobx-state-tree").IType<number | undefined, number, number>;
+    htextRotation: import("@jbrowse/mobx-state-tree").IType<number | undefined, number, number>;
+    fontSize: import("@jbrowse/mobx-state-tree").IType<number | undefined, number, number>;
+    trackSelectorType: import("@jbrowse/mobx-state-tree").IType<string | undefined, string, string>;
+    assemblyNames: import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
+    drawCigar: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
+    hview: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").IModelType<{
+        id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
+        displayedRegions: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/core/util").Region[], import("@jbrowse/core/util").Region[], import("@jbrowse/core/util").Region[]>, [undefined]>;
+        bpPerPx: import("@jbrowse/mobx-state-tree").IType<number | undefined, number, number>;
+        offsetPx: import("@jbrowse/mobx-state-tree").IType<number | undefined, number, number>;
+        interRegionPaddingWidth: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<number>, [undefined]>;
+        minimumBlockWidth: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<number>, [undefined]>;
     }, {
         features: undefined | import("@jbrowse/core/util").Feature[];
         volatileWidth: number;
@@ -94,14 +94,14 @@ export default function stateModelFactory(pm: PluginManager): import("mobx-state
         readonly minOffset: number;
     } & {
         readonly width: any;
-    }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>, [undefined]>;
-    vview: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").IModelType<{
-        id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
-        displayedRegions: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").IType<import("@jbrowse/core/util").Region[], import("@jbrowse/core/util").Region[], import("@jbrowse/core/util").Region[]>, [undefined]>;
-        bpPerPx: import("mobx-state-tree").IType<number | undefined, number, number>;
-        offsetPx: import("mobx-state-tree").IType<number | undefined, number, number>;
-        interRegionPaddingWidth: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<number>, [undefined]>;
-        minimumBlockWidth: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<number>, [undefined]>;
+    }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>, [undefined]>;
+    vview: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").IModelType<{
+        id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
+        displayedRegions: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/core/util").Region[], import("@jbrowse/core/util").Region[], import("@jbrowse/core/util").Region[]>, [undefined]>;
+        bpPerPx: import("@jbrowse/mobx-state-tree").IType<number | undefined, number, number>;
+        offsetPx: import("@jbrowse/mobx-state-tree").IType<number | undefined, number, number>;
+        interRegionPaddingWidth: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<number>, [undefined]>;
+        minimumBlockWidth: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<number>, [undefined]>;
     }, {
         features: undefined | import("@jbrowse/core/util").Feature[];
         volatileWidth: number;
@@ -160,48 +160,10 @@ export default function stateModelFactory(pm: PluginManager): import("mobx-state
         readonly minOffset: number;
     } & {
         readonly width: any;
-    }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>, [undefined]>;
-    tracks: import("mobx-state-tree").IArrayType<import("mobx-state-tree").IModelType<{
-        id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
-        type: import("mobx-state-tree").ISimpleType<string>;
-        configuration: import("@jbrowse/core/configuration").AnyConfigurationSchemaType;
-        minimized: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
-        pinned: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
-        displays: import("mobx-state-tree").IArrayType<import("mobx-state-tree").IAnyType>;
-    }, {
-        readonly rpcSessionId: any;
-        readonly name: any;
-        readonly textSearchAdapter: any;
-        readonly adapterConfig: any;
-        readonly adapterType: import("@jbrowse/core/pluggableElementTypes").AdapterType;
-        readonly viewMenuActions: import("@jbrowse/core/ui").MenuItem[];
-        readonly canConfigure: boolean | ({
-            [x: string]: any;
-        } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
-            setSubschema(slotName: string, data: Record<string, unknown>): Record<string, unknown> | ({
-                [x: string]: any;
-            } & import("mobx-state-tree/dist/internal").NonEmptyObject & any & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>);
-        } & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>) | undefined;
-    } & {
-        setPinned(flag: boolean): void;
-        setMinimized(flag: boolean): void;
-        showDisplay(displayId: string, initialSnapshot?: {}): void;
-        hideDisplay(displayId: string): number;
-        replaceDisplay(oldId: string, newId: string, initialSnapshot?: {}): void;
-    } & {
-        trackMenuItems(): (import("@jbrowse/core/ui").MenuDivider | import("@jbrowse/core/ui").MenuSubHeader | import("@jbrowse/core/ui").NormalMenuItem | import("@jbrowse/core/ui").CheckboxMenuItem | import("@jbrowse/core/ui").RadioMenuItem | import("@jbrowse/core/ui").SubMenuItem | {
-            type: string;
-            label: string;
-            priority: number;
-            subMenu: {
-                type: string;
-                label: string;
-                checked: boolean;
-                onClick: () => void;
-            }[];
-        })[];
-    }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
-    viewTrackConfigs: import("mobx-state-tree").IArrayType<import("mobx-state-tree").IAnyModelType>;
+    }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>, [undefined]>;
+    tracks: import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").IAnyType>;
+    viewTrackConfigs: import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").IAnyModelType>;
+    init: import("@jbrowse/mobx-state-tree").IType<DotplotViewInit | undefined, DotplotViewInit | undefined, DotplotViewInit | undefined>;
 }, {
     width: number;
 } & {
@@ -242,17 +204,20 @@ export default function stateModelFactory(pm: PluginManager): import("mobx-state
         index: number;
         refName: string;
     }[];
-    readonly loading: boolean;
+    readonly hasSomethingToShow: boolean;
+    readonly showLoading: boolean;
+    readonly showImportForm: boolean;
+    readonly loadingMessage: "Loading" | undefined;
     readonly viewWidth: number;
     readonly viewHeight: number;
     readonly views: ({
         id: string;
-        displayedRegions: import("@jbrowse/core/util").Region[] & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").IType<import("@jbrowse/core/util").Region[], import("@jbrowse/core/util").Region[], import("@jbrowse/core/util").Region[]>, [undefined]>>;
+        displayedRegions: import("@jbrowse/core/util").Region[] & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/core/util").Region[], import("@jbrowse/core/util").Region[], import("@jbrowse/core/util").Region[]>, [undefined]>>;
         bpPerPx: number;
         offsetPx: number;
         interRegionPaddingWidth: number;
         minimumBlockWidth: number;
-    } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
+    } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
         features: undefined | import("@jbrowse/core/util").Feature[];
         volatileWidth: number;
     } & {
@@ -310,13 +275,13 @@ export default function stateModelFactory(pm: PluginManager): import("mobx-state
         readonly minOffset: number;
     } & {
         readonly width: any;
-    } & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").IModelType<{
-        id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
-        displayedRegions: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").IType<import("@jbrowse/core/util").Region[], import("@jbrowse/core/util").Region[], import("@jbrowse/core/util").Region[]>, [undefined]>;
-        bpPerPx: import("mobx-state-tree").IType<number | undefined, number, number>;
-        offsetPx: import("mobx-state-tree").IType<number | undefined, number, number>;
-        interRegionPaddingWidth: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<number>, [undefined]>;
-        minimumBlockWidth: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<number>, [undefined]>;
+    } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").IModelType<{
+        id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
+        displayedRegions: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/core/util").Region[], import("@jbrowse/core/util").Region[], import("@jbrowse/core/util").Region[]>, [undefined]>;
+        bpPerPx: import("@jbrowse/mobx-state-tree").IType<number | undefined, number, number>;
+        offsetPx: import("@jbrowse/mobx-state-tree").IType<number | undefined, number, number>;
+        interRegionPaddingWidth: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<number>, [undefined]>;
+        minimumBlockWidth: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<number>, [undefined]>;
     }, {
         features: undefined | import("@jbrowse/core/util").Feature[];
         volatileWidth: number;
@@ -375,7 +340,7 @@ export default function stateModelFactory(pm: PluginManager): import("mobx-state
         readonly minOffset: number;
     } & {
         readonly width: any;
-    }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>, [undefined]>>)[];
+    }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>, [undefined]>>)[];
     renderProps(): any;
 } & {
     setShowPanButtons(flag: boolean): void;
@@ -388,12 +353,14 @@ export default function stateModelFactory(pm: PluginManager): import("mobx-state
     setWidth(newWidth: number): number;
     setHeight(newHeight: number): number;
     setError(e: unknown): void;
+    setInit(init?: DotplotViewInit): void;
     zoomOut(): void;
     zoomIn(): void;
+} & {
     activateTrackSelector(): import("@jbrowse/core/util").Widget;
-    showTrack(trackId: string, initialSnapshot?: {}): void;
-    hideTrack(trackId: string): number;
-    toggleTrack(trackId: string): boolean;
+    showTrack(trackId: string, initialSnapshot?: {}): any;
+    hideTrack(trackId: string): 0 | 1;
+    toggleTrack(trackId: string): void;
     setAssemblyNames(target: string, query: string): void;
     setViews(arr: SnapshotIn<Base1DViewModel>[]): void;
     getCoords(mousedown: Coord, mouseup: Coord): {
@@ -408,7 +375,12 @@ export default function stateModelFactory(pm: PluginManager): import("mobx-state
         reversed?: boolean;
     }[] | undefined;
     zoomInToMouseCoords(mousedown: Coord, mouseup: Coord): void;
+    calculateBorders(): {
+        borderX: number;
+        borderY: number;
+    };
     showAllRegions(): void;
+    initializeDisplayedRegions(): void;
     onDotplotView(mousedown: Coord, mouseup: Coord): void;
 } & {
     exportSvg(opts?: ExportSvgOptions): Promise<void>;
@@ -429,7 +401,158 @@ export default function stateModelFactory(pm: PluginManager): import("mobx-state
         icon: typeof TrackSelectorIcon;
     })[];
     readonly error: unknown;
-}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>;
+}, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree").ModelSnapshotType<{
+    id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
+    displayName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
+    minimized: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
+} & {
+    id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
+    type: import("@jbrowse/mobx-state-tree").ISimpleType<"DotplotView">;
+    height: import("@jbrowse/mobx-state-tree").IType<number | undefined, number, number>;
+    borderSize: import("@jbrowse/mobx-state-tree").IType<number | undefined, number, number>;
+    tickSize: import("@jbrowse/mobx-state-tree").IType<number | undefined, number, number>;
+    vtextRotation: import("@jbrowse/mobx-state-tree").IType<number | undefined, number, number>;
+    htextRotation: import("@jbrowse/mobx-state-tree").IType<number | undefined, number, number>;
+    fontSize: import("@jbrowse/mobx-state-tree").IType<number | undefined, number, number>;
+    trackSelectorType: import("@jbrowse/mobx-state-tree").IType<string | undefined, string, string>;
+    assemblyNames: import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
+    drawCigar: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
+    hview: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").IModelType<{
+        id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
+        displayedRegions: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/core/util").Region[], import("@jbrowse/core/util").Region[], import("@jbrowse/core/util").Region[]>, [undefined]>;
+        bpPerPx: import("@jbrowse/mobx-state-tree").IType<number | undefined, number, number>;
+        offsetPx: import("@jbrowse/mobx-state-tree").IType<number | undefined, number, number>;
+        interRegionPaddingWidth: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<number>, [undefined]>;
+        minimumBlockWidth: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<number>, [undefined]>;
+    }, {
+        features: undefined | import("@jbrowse/core/util").Feature[];
+        volatileWidth: number;
+    } & {
+        setDisplayedRegions(regions: import("@jbrowse/core/util").Region[]): void;
+        setBpPerPx(val: number): void;
+        setVolatileWidth(width: number): void;
+    } & {
+        readonly width: number;
+        readonly assemblyNames: string[];
+        readonly displayedRegionsTotalPx: number;
+        readonly maxOffset: number;
+        readonly minOffset: number;
+        readonly totalBp: number;
+    } & {
+        readonly dynamicBlocks: import("@jbrowse/core/util/blockTypes").BlockSet;
+        readonly staticBlocks: import("@jbrowse/core/util/blockTypes").BlockSet;
+        readonly currBp: number;
+    } & {
+        pxToBp(px: number): {
+            coord: number;
+            index: number;
+            refName: string;
+            oob: boolean;
+            assemblyName: string;
+            offset: number;
+            start: number;
+            end: number;
+            reversed?: boolean;
+        };
+        bpToPx({ refName, coord, regionNumber, }: {
+            refName: string;
+            coord: number;
+            regionNumber?: number;
+        }): number | undefined;
+    } & {
+        setFeatures(features: import("@jbrowse/core/util").Feature[]): void;
+        showAllRegions(): void;
+        zoomOut(): void;
+        zoomIn(): void;
+        zoomTo(bpPerPx: number, offset?: number): number;
+        scrollTo(offsetPx: number): number;
+        centerAt(coord: number, refName: string | undefined, regionNumber: number): void;
+        scroll(distance: number): number;
+    } & {
+        moveTo(start?: import("@jbrowse/core/util/Base1DUtils").BpOffset, end?: import("@jbrowse/core/util/Base1DUtils").BpOffset): void;
+    } & {
+        setScaleFactor(n: number): void;
+        center(): void;
+    } & {
+        readonly dynamicBlocks: import("@jbrowse/core/util/blockTypes").BlockSet;
+        readonly scaleFactor: number;
+        readonly maxBpPerPx: number;
+        readonly minBpPerPx: number;
+        readonly maxOffset: number;
+        readonly minOffset: number;
+    } & {
+        readonly width: any;
+    }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>, [undefined]>;
+    vview: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").IModelType<{
+        id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
+        displayedRegions: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/core/util").Region[], import("@jbrowse/core/util").Region[], import("@jbrowse/core/util").Region[]>, [undefined]>;
+        bpPerPx: import("@jbrowse/mobx-state-tree").IType<number | undefined, number, number>;
+        offsetPx: import("@jbrowse/mobx-state-tree").IType<number | undefined, number, number>;
+        interRegionPaddingWidth: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<number>, [undefined]>;
+        minimumBlockWidth: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<number>, [undefined]>;
+    }, {
+        features: undefined | import("@jbrowse/core/util").Feature[];
+        volatileWidth: number;
+    } & {
+        setDisplayedRegions(regions: import("@jbrowse/core/util").Region[]): void;
+        setBpPerPx(val: number): void;
+        setVolatileWidth(width: number): void;
+    } & {
+        readonly width: number;
+        readonly assemblyNames: string[];
+        readonly displayedRegionsTotalPx: number;
+        readonly maxOffset: number;
+        readonly minOffset: number;
+        readonly totalBp: number;
+    } & {
+        readonly dynamicBlocks: import("@jbrowse/core/util/blockTypes").BlockSet;
+        readonly staticBlocks: import("@jbrowse/core/util/blockTypes").BlockSet;
+        readonly currBp: number;
+    } & {
+        pxToBp(px: number): {
+            coord: number;
+            index: number;
+            refName: string;
+            oob: boolean;
+            assemblyName: string;
+            offset: number;
+            start: number;
+            end: number;
+            reversed?: boolean;
+        };
+        bpToPx({ refName, coord, regionNumber, }: {
+            refName: string;
+            coord: number;
+            regionNumber?: number;
+        }): number | undefined;
+    } & {
+        setFeatures(features: import("@jbrowse/core/util").Feature[]): void;
+        showAllRegions(): void;
+        zoomOut(): void;
+        zoomIn(): void;
+        zoomTo(bpPerPx: number, offset?: number): number;
+        scrollTo(offsetPx: number): number;
+        centerAt(coord: number, refName: string | undefined, regionNumber: number): void;
+        scroll(distance: number): number;
+    } & {
+        moveTo(start?: import("@jbrowse/core/util/Base1DUtils").BpOffset, end?: import("@jbrowse/core/util/Base1DUtils").BpOffset): void;
+    } & {
+        setScaleFactor(n: number): void;
+        center(): void;
+    } & {
+        readonly dynamicBlocks: import("@jbrowse/core/util/blockTypes").BlockSet;
+        readonly scaleFactor: number;
+        readonly maxBpPerPx: number;
+        readonly minBpPerPx: number;
+        readonly maxOffset: number;
+        readonly minOffset: number;
+    } & {
+        readonly width: any;
+    }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>, [undefined]>;
+    tracks: import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").IAnyType>;
+    viewTrackConfigs: import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").IAnyModelType>;
+    init: import("@jbrowse/mobx-state-tree").IType<DotplotViewInit | undefined, DotplotViewInit | undefined, DotplotViewInit | undefined>;
+}>>;
 export type DotplotViewStateModel = ReturnType<typeof stateModelFactory>;
 export type DotplotViewModel = Instance<DotplotViewStateModel>;
-export { Dotplot1DView, type Dotplot1DViewModel } from './1dview';
+export { Dotplot1DView, type Dotplot1DViewModel } from './1dview.ts';