@jbrowse/plugin-dotplot-view 3.5.1 → 3.6.0

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Files changed (29) hide show
  1. package/dist/DotplotView/components/ImportForm/ImportSyntenyOpenCustomTrack.js +2 -53
  2. package/dist/DotplotView/components/ImportForm/ImportSyntenyTrackSelector.js +2 -2
  3. package/dist/DotplotView/components/ImportForm/selectors/AnchorsFileSelector.d.ts +3 -0
  4. package/dist/DotplotView/components/ImportForm/selectors/AnchorsFileSelector.js +23 -0
  5. package/dist/DotplotView/components/ImportForm/selectors/PifGzSelector.d.ts +3 -0
  6. package/dist/DotplotView/components/ImportForm/selectors/PifGzSelector.js +13 -0
  7. package/dist/DotplotView/components/ImportForm/selectors/SelectorTypes.d.ts +23 -0
  8. package/dist/DotplotView/components/ImportForm/selectors/SelectorTypes.js +10 -0
  9. package/dist/DotplotView/components/ImportForm/selectors/SwapAssemblies.d.ts +13 -0
  10. package/dist/DotplotView/components/ImportForm/selectors/SwapAssemblies.js +32 -0
  11. package/dist/DotplotView/components/ImportForm/selectors/SyntenyFileSelector.d.ts +3 -0
  12. package/dist/DotplotView/components/ImportForm/selectors/SyntenyFileSelector.js +24 -0
  13. package/dist/DotplotView/components/ImportForm/selectors/index.d.ts +3 -0
  14. package/dist/DotplotView/components/ImportForm/selectors/index.js +12 -0
  15. package/esm/DotplotView/components/ImportForm/ImportSyntenyOpenCustomTrack.js +4 -52
  16. package/esm/DotplotView/components/ImportForm/ImportSyntenyTrackSelector.js +2 -2
  17. package/esm/DotplotView/components/ImportForm/selectors/AnchorsFileSelector.d.ts +3 -0
  18. package/esm/DotplotView/components/ImportForm/selectors/AnchorsFileSelector.js +18 -0
  19. package/esm/DotplotView/components/ImportForm/selectors/PifGzSelector.d.ts +3 -0
  20. package/esm/DotplotView/components/ImportForm/selectors/PifGzSelector.js +8 -0
  21. package/esm/DotplotView/components/ImportForm/selectors/SelectorTypes.d.ts +23 -0
  22. package/esm/DotplotView/components/ImportForm/selectors/SelectorTypes.js +7 -0
  23. package/esm/DotplotView/components/ImportForm/selectors/SwapAssemblies.d.ts +13 -0
  24. package/esm/DotplotView/components/ImportForm/selectors/SwapAssemblies.js +27 -0
  25. package/esm/DotplotView/components/ImportForm/selectors/SyntenyFileSelector.d.ts +3 -0
  26. package/esm/DotplotView/components/ImportForm/selectors/SyntenyFileSelector.js +19 -0
  27. package/esm/DotplotView/components/ImportForm/selectors/index.d.ts +3 -0
  28. package/esm/DotplotView/components/ImportForm/selectors/index.js +3 -0
  29. package/package.json +4 -4
package/dist/DotplotView/components/ImportForm/ImportSyntenyOpenCustomTrack.js CHANGED
@@ -1,15 +1,12 @@
1
1
  "use strict";
2
- var __importDefault = (this && this.__importDefault) || function (mod) {
3
- return (mod && mod.__esModule) ? mod : { "default": mod };
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- };
5
2
  Object.defineProperty(exports, "__esModule", { value: true });
6
3
  const jsx_runtime_1 = require("react/jsx-runtime");
7
4
  const react_1 = require("react");
8
5
  const ui_1 = require("@jbrowse/core/ui");
9
- const Help_1 = __importDefault(require("@mui/icons-material/Help"));
10
6
  const material_1 = require("@mui/material");
11
7
  const mobx_react_1 = require("mobx-react");
12
8
  const getAdapter_1 = require("./getAdapter");
9
+ const selectors_1 = require("./selectors");
13
10
  const util_1 = require("./util");
14
11
  const ImportSyntenyOpenCustomTrack = (0, mobx_react_1.observer)(function ({ model, assembly1, assembly2, }) {
15
12
  const [swap, setSwap] = (0, react_1.useState)(false);
@@ -63,13 +60,6 @@ const ImportSyntenyOpenCustomTrack = (0, mobx_react_1.observer)(function ({ mode
63
60
  indexFileLocation,
64
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  radioOption,
65
62
  ]);
66
- const helpStrings = {
67
- '.paf': 'minimap2 target.fa query.fa',
68
- '.pif.gz': 'minimap2 target.fa query.fa',
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- '.out': 'mashmap target.fa query.fa',
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- '.delta': 'mummer target.fa query.fa',
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- '.chain': 'e.g. queryToTarget.chain',
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- };
73
63
  return ((0, jsx_runtime_1.jsxs)(material_1.Paper, { style: { padding: 12 }, children: [error ? (0, jsx_runtime_1.jsx)(ui_1.ErrorMessage, { error: error }) : null, (0, jsx_runtime_1.jsx)(material_1.Typography, { style: { textAlign: 'center' }, children: "Add a .paf (minimap2), .delta (Mummer), .chain (UCSC liftover), .anchors or .anchors.simple (MCScan), or .pif.gz (jbrowse CLI make-pif) file to view. These file types can also be gzipped." }), (0, jsx_runtime_1.jsx)(material_1.RadioGroup, { value: radioOption, onChange: event => {
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  setValue(event.target.value);
75
65
  }, children: (0, jsx_runtime_1.jsx)(material_1.Grid, { container: true, justifyContent: "center", children: [
@@ -83,47 +73,6 @@ const ImportSyntenyOpenCustomTrack = (0, mobx_react_1.observer)(function ({ mode
83
73
  ].map(extension => ((0, jsx_runtime_1.jsx)(material_1.FormControlLabel, { value: extension, control: (0, jsx_runtime_1.jsx)(material_1.Radio, {}), label: extension }, extension))) }) }), (0, jsx_runtime_1.jsx)(material_1.Grid, { container: true, justifyContent: "center", children: radioOption === '.paf' ||
84
74
  radioOption === '.out' ||
85
75
  radioOption === '.delta' ||
86
- radioOption === '.chain' ||
87
- radioOption === '.pif.gz' ? ((0, jsx_runtime_1.jsxs)("div", { style: {
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- display: 'flex',
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- flexDirection: 'column',
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- gap: 10,
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- }, children: [(0, jsx_runtime_1.jsx)(ui_1.FileSelector, { name: `${radioOption} location`, inline: true, description: "", location: fileLocation, setLocation: loc => {
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- setFileLocation(loc);
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- } }), (0, jsx_runtime_1.jsxs)("div", { children: [(0, jsx_runtime_1.jsxs)("div", { children: ["Verify or click swap", (0, jsx_runtime_1.jsx)(material_1.Tooltip, { title: (0, jsx_runtime_1.jsx)("code", { children: helpStrings[radioOption] }), children: (0, jsx_runtime_1.jsx)(Help_1.default, {}) })] }), (0, jsx_runtime_1.jsxs)("div", { style: {
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- display: 'flex',
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- gap: 20,
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- }, children: [(0, jsx_runtime_1.jsxs)("div", { style: {
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- display: 'grid',
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- gridTemplateColumns: '1fr 1fr',
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- gap: 4,
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- alignItems: 'center',
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- }, children: [(0, jsx_runtime_1.jsx)("div", { children: (0, jsx_runtime_1.jsx)("i", { children: swap ? assembly2 : assembly1 }) }), (0, jsx_runtime_1.jsx)("div", { children: "query assembly" }), (0, jsx_runtime_1.jsx)("div", { children: (0, jsx_runtime_1.jsx)("i", { children: swap ? assembly1 : assembly2 }) }), (0, jsx_runtime_1.jsx)("div", { children: "target assembly" })] }), (0, jsx_runtime_1.jsx)(material_1.Button, { variant: "contained", onClick: () => {
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- setSwap(!swap);
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- }, children: "Swap?" })] })] })] })) : value === '.anchors' || value === '.anchors.simple' ? ((0, jsx_runtime_1.jsxs)("div", { children: [(0, jsx_runtime_1.jsxs)("div", { style: { margin: 20 }, children: ["Open the ", value, " and .bed files for both genome assemblies from the MCScan (Python version) pipeline", ' ', (0, jsx_runtime_1.jsx)("a", { href: "https://github.com/tanghaibao/jcvi/wiki/MCscan-(Python-version)", children: "(more info)" })] }), (0, jsx_runtime_1.jsxs)("div", { children: [(0, jsx_runtime_1.jsx)(ui_1.FileSelector, { inline: true, name: value, location: fileLocation, setLocation: loc => {
104
- setFileLocation(loc);
105
- } }), (0, jsx_runtime_1.jsx)(ui_1.FileSelector, { inline: true, name: "genome 1 .bed (left column of anchors file)", description: "", location: bed1Location, setLocation: loc => {
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- setBed1Location(loc);
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- } }), (0, jsx_runtime_1.jsx)(ui_1.FileSelector, { inline: true, name: "genome 2 .bed (right column of anchors file)", description: "", location: bed2Location, setLocation: loc => {
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- setBed2Location(loc);
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- } })] }), (0, jsx_runtime_1.jsxs)("div", { style: {
110
- margin: 'auto',
111
- display: 'flex',
112
- justifyContent: 'center',
113
- gap: 20,
114
- }, children: [(0, jsx_runtime_1.jsxs)("div", { style: {
115
- display: 'grid',
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- gridTemplateColumns: '1fr 1fr',
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- gap: 4,
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- alignItems: 'center',
119
- }, children: [(0, jsx_runtime_1.jsx)("div", { children: (0, jsx_runtime_1.jsx)("i", { children: swap ? assembly2 : assembly1 }) }), (0, jsx_runtime_1.jsx)("div", { children: "bed1 assembly" }), (0, jsx_runtime_1.jsx)("div", { children: (0, jsx_runtime_1.jsx)("i", { children: swap ? assembly1 : assembly2 }) }), (0, jsx_runtime_1.jsx)("div", { children: "bed2 assembly" })] }), (0, jsx_runtime_1.jsx)(material_1.Button, { variant: "contained", onClick: () => {
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- setSwap(!swap);
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- }, children: "Swap?" })] })] })) : value === '.pif.gz' ? ((0, jsx_runtime_1.jsxs)("div", { style: { display: 'flex' }, children: [(0, jsx_runtime_1.jsx)("div", { children: (0, jsx_runtime_1.jsx)(ui_1.FileSelector, { name: `${value} location`, description: "", location: fileLocation, setLocation: loc => {
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- setFileLocation(loc);
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- } }) }), (0, jsx_runtime_1.jsx)("div", { children: (0, jsx_runtime_1.jsx)(ui_1.FileSelector, { name: `${value} index location`, description: "", location: indexFileLocation, setLocation: loc => {
124
- setIndexFileLocation(loc);
125
- } }) })] })) : ((0, jsx_runtime_1.jsx)(ui_1.FileSelector, { name: value ? `${value} location` : '', description: "", location: fileLocation, setLocation: loc => {
126
- setFileLocation(loc);
127
- } })) })] }));
76
+ radioOption === '.chain' ? ((0, jsx_runtime_1.jsx)(selectors_1.SyntenyFileSelector, { radioOption: radioOption, fileLocation: fileLocation, setFileLocation: setFileLocation, assembly1: assembly1, assembly2: assembly2, swap: swap, setSwap: setSwap })) : radioOption === '.anchors' || radioOption === '.anchors.simple' ? ((0, jsx_runtime_1.jsx)(selectors_1.AnchorsFileSelector, { radioOption: radioOption, fileLocation: fileLocation, setFileLocation: setFileLocation, assembly1: assembly1, assembly2: assembly2, swap: swap, setSwap: setSwap, bed1Location: bed1Location, setBed1Location: setBed1Location, bed2Location: bed2Location, setBed2Location: setBed2Location })) : radioOption === '.pif.gz' ? ((0, jsx_runtime_1.jsx)(selectors_1.PifGzSelector, { radioOption: radioOption, fileLocation: fileLocation, setFileLocation: setFileLocation, assembly1: assembly1, assembly2: assembly2, swap: swap, setSwap: setSwap, indexFileLocation: indexFileLocation, setIndexFileLocation: setIndexFileLocation })) : null })] }));
128
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  });
129
78
  exports.default = ImportSyntenyOpenCustomTrack;
package/dist/DotplotView/components/ImportForm/ImportSyntenyTrackSelector.js CHANGED
@@ -9,7 +9,7 @@ const util_1 = require("@jbrowse/core/util");
9
9
  const tracks_1 = require("@jbrowse/core/util/tracks");
10
10
  const material_1 = require("@mui/material");
11
11
  const mobx_react_1 = require("mobx-react");
12
- function f(track, assembly1, assembly2) {
12
+ function isRelevantTrack(track, assembly1, assembly2) {
13
13
  const assemblyNames = (0, configuration_1.readConfObject)(track, 'assemblyNames');
14
14
  return (assemblyNames.includes(assembly1) &&
15
15
  assemblyNames.includes(assembly2) &&
@@ -23,7 +23,7 @@ const ImportSyntenyTrackSelector = (0, mobx_react_1.observer)(function ({ model,
23
23
  ...tracks,
24
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  ...(sessionTracks || []),
25
25
  ];
26
- const filteredTracks = allTracks.filter(t => f(t, assembly2, assembly1));
26
+ const filteredTracks = allTracks.filter(t => isRelevantTrack(t, assembly2, assembly1));
27
27
  const resetTrack = ((_a = filteredTracks[0]) === null || _a === void 0 ? void 0 : _a.trackId) || '';
28
28
  const [value, setValue] = (0, react_1.useState)(resetTrack);
29
29
  (0, react_1.useEffect)(() => {
package/dist/DotplotView/components/ImportForm/selectors/AnchorsFileSelector.d.ts ADDED
@@ -0,0 +1,3 @@
1
+ import type { SelectorProps } from './SelectorTypes';
2
+ declare const AnchorsFileSelector: ({ assembly1, assembly2, swap, setSwap, fileLocation, setFileLocation, bed1Location, setBed1Location, bed2Location, setBed2Location, radioOption, }: SelectorProps) => import("react/jsx-runtime").JSX.Element;
3
+ export default AnchorsFileSelector;
package/dist/DotplotView/components/ImportForm/selectors/AnchorsFileSelector.js ADDED
@@ -0,0 +1,23 @@
1
+ "use strict";
2
+ var __importDefault = (this && this.__importDefault) || function (mod) {
3
+ return (mod && mod.__esModule) ? mod : { "default": mod };
4
+ };
5
+ Object.defineProperty(exports, "__esModule", { value: true });
6
+ const jsx_runtime_1 = require("react/jsx-runtime");
7
+ const ui_1 = require("@jbrowse/core/ui");
8
+ const mobx_react_1 = require("mobx-react");
9
+ const SwapAssemblies_1 = __importDefault(require("./SwapAssemblies"));
10
+ const AnchorsFileSelector = (0, mobx_react_1.observer)(function ({ assembly1, assembly2, swap, setSwap, fileLocation, setFileLocation, bed1Location, setBed1Location, bed2Location, setBed2Location, radioOption, }) {
11
+ return ((0, jsx_runtime_1.jsxs)("div", { children: [(0, jsx_runtime_1.jsxs)("div", { style: { margin: 20 }, children: ["Open the ", radioOption, " and .bed files for both genome assemblies from the MCScan (Python version) pipeline", ' ', (0, jsx_runtime_1.jsx)("a", { href: "https://github.com/tanghaibao/jcvi/wiki/MCscan-(Python-version)", children: "(more info)" })] }), (0, jsx_runtime_1.jsxs)("div", { children: [(0, jsx_runtime_1.jsx)(ui_1.FileSelector, { inline: true, name: radioOption, location: fileLocation, setLocation: loc => {
12
+ setFileLocation(loc);
13
+ } }), (0, jsx_runtime_1.jsx)(ui_1.FileSelector, { inline: true, name: "genome 1 .bed (left column of anchors file)", description: "", location: bed1Location, setLocation: loc => {
14
+ if (setBed1Location) {
15
+ setBed1Location(loc);
16
+ }
17
+ } }), (0, jsx_runtime_1.jsx)(ui_1.FileSelector, { inline: true, name: "genome 2 .bed (right column of anchors file)", description: "", location: bed2Location, setLocation: loc => {
18
+ if (setBed2Location) {
19
+ setBed2Location(loc);
20
+ }
21
+ } })] }), (0, jsx_runtime_1.jsx)(SwapAssemblies_1.default, { swap: swap, radioOption: radioOption, assembly1: assembly1, assembly2: assembly2, setSwap: setSwap, text1: "bed 1 assembly", text2: "bed 2 assembly" })] }));
22
+ });
23
+ exports.default = AnchorsFileSelector;
package/dist/DotplotView/components/ImportForm/selectors/PifGzSelector.d.ts ADDED
@@ -0,0 +1,3 @@
1
+ import type { SelectorProps } from './SelectorTypes';
2
+ declare const PifGzSelector: ({ assembly1, assembly2, swap, setSwap, fileLocation, setFileLocation, indexFileLocation, setIndexFileLocation, radioOption, }: SelectorProps) => import("react/jsx-runtime").JSX.Element;
3
+ export default PifGzSelector;
package/dist/DotplotView/components/ImportForm/selectors/PifGzSelector.js ADDED
@@ -0,0 +1,13 @@
1
+ "use strict";
2
+ var __importDefault = (this && this.__importDefault) || function (mod) {
3
+ return (mod && mod.__esModule) ? mod : { "default": mod };
4
+ };
5
+ Object.defineProperty(exports, "__esModule", { value: true });
6
+ const jsx_runtime_1 = require("react/jsx-runtime");
7
+ const ui_1 = require("@jbrowse/core/ui");
8
+ const mobx_react_1 = require("mobx-react");
9
+ const SwapAssemblies_1 = __importDefault(require("./SwapAssemblies"));
10
+ const PifGzSelector = (0, mobx_react_1.observer)(function ({ assembly1, assembly2, swap, setSwap, fileLocation, setFileLocation, indexFileLocation = undefined, setIndexFileLocation = () => { }, radioOption, }) {
11
+ return ((0, jsx_runtime_1.jsxs)("div", { children: [(0, jsx_runtime_1.jsxs)("div", { style: { margin: 20 }, children: ["Open the ", radioOption, " and .pif.gz and index file (.pif.gz.tbi or .pif.gz.csi) files for created by `jbrowse make-pif`"] }), (0, jsx_runtime_1.jsxs)("div", { style: { maxWidth: 400, margin: '0 auto' }, children: [(0, jsx_runtime_1.jsx)(ui_1.FileSelector, { name: `${radioOption} location`, inline: true, description: "", location: fileLocation, setLocation: setFileLocation }), (0, jsx_runtime_1.jsx)(ui_1.FileSelector, { name: `${radioOption} index location (.tbi or .csi)`, inline: true, description: "", location: indexFileLocation, setLocation: setIndexFileLocation }), (0, jsx_runtime_1.jsx)(SwapAssemblies_1.default, { swap: swap, radioOption: radioOption, assembly1: assembly1, assembly2: assembly2, setSwap: setSwap, text1: "query assembly", text2: "target assembly" })] })] }));
12
+ });
13
+ exports.default = PifGzSelector;
package/dist/DotplotView/components/ImportForm/selectors/SelectorTypes.d.ts ADDED
@@ -0,0 +1,23 @@
1
+ import type { FileLocation } from '@jbrowse/core/util/types';
2
+ export declare const helpStrings: {
3
+ readonly '.paf': "minimap2 target.fa query.fa";
4
+ readonly '.pif.gz': "minimap2 target.fa query.fa";
5
+ readonly '.out': "mashmap target.fa query.fa";
6
+ readonly '.delta': "mummer target.fa query.fa";
7
+ readonly '.chain': "e.g. queryToTarget.chain";
8
+ };
9
+ export interface SelectorProps {
10
+ assembly1?: string;
11
+ assembly2?: string;
12
+ swap?: boolean;
13
+ setSwap?: (arg: boolean) => void;
14
+ fileLocation?: FileLocation;
15
+ setFileLocation: (arg: FileLocation) => void;
16
+ indexFileLocation?: FileLocation;
17
+ setIndexFileLocation?: (arg: FileLocation) => void;
18
+ bed1Location?: FileLocation;
19
+ setBed1Location?: (arg: FileLocation) => void;
20
+ bed2Location?: FileLocation;
21
+ setBed2Location?: (arg: FileLocation) => void;
22
+ radioOption: string;
23
+ }
package/dist/DotplotView/components/ImportForm/selectors/SelectorTypes.js ADDED
@@ -0,0 +1,10 @@
1
+ "use strict";
2
+ Object.defineProperty(exports, "__esModule", { value: true });
3
+ exports.helpStrings = void 0;
4
+ exports.helpStrings = {
5
+ '.paf': 'minimap2 target.fa query.fa',
6
+ '.pif.gz': 'minimap2 target.fa query.fa',
7
+ '.out': 'mashmap target.fa query.fa',
8
+ '.delta': 'mummer target.fa query.fa',
9
+ '.chain': 'e.g. queryToTarget.chain',
10
+ };
package/dist/DotplotView/components/ImportForm/selectors/SwapAssemblies.d.ts ADDED
@@ -0,0 +1,13 @@
1
+ import type { ReactNode } from 'react';
2
+ export interface SwapAssembliesProps {
3
+ assembly1?: string;
4
+ assembly2?: string;
5
+ swap?: boolean;
6
+ setSwap?: (arg: boolean) => void;
7
+ radioOption: string;
8
+ helpContent?: ReactNode;
9
+ text1: string;
10
+ text2: string;
11
+ }
12
+ declare const SwapAssemblies: ({ assembly1, assembly2, swap, setSwap, radioOption, helpContent, text1, text2, }: SwapAssembliesProps) => import("react/jsx-runtime").JSX.Element;
13
+ export default SwapAssemblies;
package/dist/DotplotView/components/ImportForm/selectors/SwapAssemblies.js ADDED
@@ -0,0 +1,32 @@
1
+ "use strict";
2
+ var __importDefault = (this && this.__importDefault) || function (mod) {
3
+ return (mod && mod.__esModule) ? mod : { "default": mod };
4
+ };
5
+ Object.defineProperty(exports, "__esModule", { value: true });
6
+ const jsx_runtime_1 = require("react/jsx-runtime");
7
+ const Help_1 = __importDefault(require("@mui/icons-material/Help"));
8
+ const material_1 = require("@mui/material");
9
+ const mobx_react_1 = require("mobx-react");
10
+ const mui_1 = require("tss-react/mui");
11
+ const SelectorTypes_1 = require("./SelectorTypes");
12
+ const useStyles = (0, mui_1.makeStyles)()({
13
+ row: {
14
+ display: 'flex',
15
+ gap: 20,
16
+ },
17
+ swap: {
18
+ display: 'grid',
19
+ gridTemplateColumns: '1fr 1fr',
20
+ gap: 4,
21
+ alignItems: 'center',
22
+ },
23
+ });
24
+ const SwapAssemblies = (0, mobx_react_1.observer)(function ({ assembly1, assembly2, swap, setSwap, radioOption, helpContent, text1, text2, }) {
25
+ const { classes } = useStyles();
26
+ return ((0, jsx_runtime_1.jsxs)("div", { children: [(0, jsx_runtime_1.jsxs)("div", { children: ["Verify or click swap", (0, jsx_runtime_1.jsx)(material_1.Tooltip, { title: helpContent || ((0, jsx_runtime_1.jsx)("code", { children: SelectorTypes_1.helpStrings[radioOption] })), children: (0, jsx_runtime_1.jsx)(Help_1.default, {}) })] }), (0, jsx_runtime_1.jsxs)("div", { className: classes.row, children: [(0, jsx_runtime_1.jsxs)("div", { className: classes.swap, children: [(0, jsx_runtime_1.jsx)("div", { children: (0, jsx_runtime_1.jsx)("i", { children: swap ? assembly2 : assembly1 }) }), (0, jsx_runtime_1.jsx)("div", { children: text1 }), (0, jsx_runtime_1.jsx)("div", { children: (0, jsx_runtime_1.jsx)("i", { children: swap ? assembly1 : assembly2 }) }), (0, jsx_runtime_1.jsx)("div", { children: text2 })] }), (0, jsx_runtime_1.jsx)(material_1.Button, { variant: "contained", onClick: () => {
27
+ if (setSwap) {
28
+ setSwap(!swap);
29
+ }
30
+ }, children: "Swap?" })] })] }));
31
+ });
32
+ exports.default = SwapAssemblies;
package/dist/DotplotView/components/ImportForm/selectors/SyntenyFileSelector.d.ts ADDED
@@ -0,0 +1,3 @@
1
+ import type { SelectorProps } from './SelectorTypes';
2
+ declare const SyntenyFileSelector: ({ assembly1, assembly2, swap, setSwap, fileLocation, setFileLocation, radioOption, }: SelectorProps) => import("react/jsx-runtime").JSX.Element;
3
+ export default SyntenyFileSelector;
package/dist/DotplotView/components/ImportForm/selectors/SyntenyFileSelector.js ADDED
@@ -0,0 +1,24 @@
1
+ "use strict";
2
+ var __importDefault = (this && this.__importDefault) || function (mod) {
3
+ return (mod && mod.__esModule) ? mod : { "default": mod };
4
+ };
5
+ Object.defineProperty(exports, "__esModule", { value: true });
6
+ const jsx_runtime_1 = require("react/jsx-runtime");
7
+ const ui_1 = require("@jbrowse/core/ui");
8
+ const mobx_react_1 = require("mobx-react");
9
+ const mui_1 = require("tss-react/mui");
10
+ const SwapAssemblies_1 = __importDefault(require("./SwapAssemblies"));
11
+ const useStyles = (0, mui_1.makeStyles)()({
12
+ container: {
13
+ display: 'flex',
14
+ flexDirection: 'column',
15
+ gap: 10,
16
+ },
17
+ });
18
+ const SyntenyFileSelector = (0, mobx_react_1.observer)(function ({ assembly1, assembly2, swap, setSwap, fileLocation, setFileLocation, radioOption, }) {
19
+ const { classes } = useStyles();
20
+ return ((0, jsx_runtime_1.jsxs)("div", { className: classes.container, children: [(0, jsx_runtime_1.jsx)(ui_1.FileSelector, { name: `${radioOption} location`, inline: true, description: "", location: fileLocation, setLocation: loc => {
21
+ setFileLocation(loc);
22
+ } }), (0, jsx_runtime_1.jsx)(SwapAssemblies_1.default, { assembly1: assembly1, assembly2: assembly2, swap: swap, setSwap: setSwap, radioOption: radioOption, text1: "query assembly", text2: "target assembly" })] }));
23
+ });
24
+ exports.default = SyntenyFileSelector;
package/dist/DotplotView/components/ImportForm/selectors/index.d.ts ADDED
@@ -0,0 +1,3 @@
1
+ export { default as AnchorsFileSelector } from './AnchorsFileSelector';
2
+ export { default as PifGzSelector } from './PifGzSelector';
3
+ export { default as SyntenyFileSelector } from './SyntenyFileSelector';
package/dist/DotplotView/components/ImportForm/selectors/index.js ADDED
@@ -0,0 +1,12 @@
1
+ "use strict";
2
+ var __importDefault = (this && this.__importDefault) || function (mod) {
3
+ return (mod && mod.__esModule) ? mod : { "default": mod };
4
+ };
5
+ Object.defineProperty(exports, "__esModule", { value: true });
6
+ exports.SyntenyFileSelector = exports.PifGzSelector = exports.AnchorsFileSelector = void 0;
7
+ var AnchorsFileSelector_1 = require("./AnchorsFileSelector");
8
+ Object.defineProperty(exports, "AnchorsFileSelector", { enumerable: true, get: function () { return __importDefault(AnchorsFileSelector_1).default; } });
9
+ var PifGzSelector_1 = require("./PifGzSelector");
10
+ Object.defineProperty(exports, "PifGzSelector", { enumerable: true, get: function () { return __importDefault(PifGzSelector_1).default; } });
11
+ var SyntenyFileSelector_1 = require("./SyntenyFileSelector");
12
+ Object.defineProperty(exports, "SyntenyFileSelector", { enumerable: true, get: function () { return __importDefault(SyntenyFileSelector_1).default; } });
package/esm/DotplotView/components/ImportForm/ImportSyntenyOpenCustomTrack.js CHANGED
@@ -1,10 +1,10 @@
1
1
  import { jsx as _jsx, jsxs as _jsxs } from "react/jsx-runtime";
2
2
  import { useEffect, useState } from 'react';
3
- import { ErrorMessage, FileSelector } from '@jbrowse/core/ui';
4
- import HelpIcon from '@mui/icons-material/Help';
5
- import { Button, FormControlLabel, Grid, Paper, Radio, RadioGroup, Tooltip, Typography, } from '@mui/material';
3
+ import { ErrorMessage } from '@jbrowse/core/ui';
4
+ import { FormControlLabel, Grid, Paper, Radio, RadioGroup, Typography, } from '@mui/material';
6
5
  import { observer } from 'mobx-react';
7
6
  import { getAdapter } from './getAdapter';
7
+ import { AnchorsFileSelector, PifGzSelector, SyntenyFileSelector, } from './selectors';
8
8
  import { basename, extName, getName, stripGz } from './util';
9
9
  const ImportSyntenyOpenCustomTrack = observer(function ({ model, assembly1, assembly2, }) {
10
10
  const [swap, setSwap] = useState(false);
@@ -58,13 +58,6 @@ const ImportSyntenyOpenCustomTrack = observer(function ({ model, assembly1, asse
58
58
  indexFileLocation,
59
59
  radioOption,
60
60
  ]);
61
- const helpStrings = {
62
- '.paf': 'minimap2 target.fa query.fa',
63
- '.pif.gz': 'minimap2 target.fa query.fa',
64
- '.out': 'mashmap target.fa query.fa',
65
- '.delta': 'mummer target.fa query.fa',
66
- '.chain': 'e.g. queryToTarget.chain',
67
- };
68
61
  return (_jsxs(Paper, { style: { padding: 12 }, children: [error ? _jsx(ErrorMessage, { error: error }) : null, _jsx(Typography, { style: { textAlign: 'center' }, children: "Add a .paf (minimap2), .delta (Mummer), .chain (UCSC liftover), .anchors or .anchors.simple (MCScan), or .pif.gz (jbrowse CLI make-pif) file to view. These file types can also be gzipped." }), _jsx(RadioGroup, { value: radioOption, onChange: event => {
69
62
  setValue(event.target.value);
70
63
  }, children: _jsx(Grid, { container: true, justifyContent: "center", children: [
@@ -78,47 +71,6 @@ const ImportSyntenyOpenCustomTrack = observer(function ({ model, assembly1, asse
78
71
  ].map(extension => (_jsx(FormControlLabel, { value: extension, control: _jsx(Radio, {}), label: extension }, extension))) }) }), _jsx(Grid, { container: true, justifyContent: "center", children: radioOption === '.paf' ||
79
72
  radioOption === '.out' ||
80
73
  radioOption === '.delta' ||
81
- radioOption === '.chain' ||
82
- radioOption === '.pif.gz' ? (_jsxs("div", { style: {
83
- display: 'flex',
84
- flexDirection: 'column',
85
- gap: 10,
86
- }, children: [_jsx(FileSelector, { name: `${radioOption} location`, inline: true, description: "", location: fileLocation, setLocation: loc => {
87
- setFileLocation(loc);
88
- } }), _jsxs("div", { children: [_jsxs("div", { children: ["Verify or click swap", _jsx(Tooltip, { title: _jsx("code", { children: helpStrings[radioOption] }), children: _jsx(HelpIcon, {}) })] }), _jsxs("div", { style: {
89
- display: 'flex',
90
- gap: 20,
91
- }, children: [_jsxs("div", { style: {
92
- display: 'grid',
93
- gridTemplateColumns: '1fr 1fr',
94
- gap: 4,
95
- alignItems: 'center',
96
- }, children: [_jsx("div", { children: _jsx("i", { children: swap ? assembly2 : assembly1 }) }), _jsx("div", { children: "query assembly" }), _jsx("div", { children: _jsx("i", { children: swap ? assembly1 : assembly2 }) }), _jsx("div", { children: "target assembly" })] }), _jsx(Button, { variant: "contained", onClick: () => {
97
- setSwap(!swap);
98
- }, children: "Swap?" })] })] })] })) : value === '.anchors' || value === '.anchors.simple' ? (_jsxs("div", { children: [_jsxs("div", { style: { margin: 20 }, children: ["Open the ", value, " and .bed files for both genome assemblies from the MCScan (Python version) pipeline", ' ', _jsx("a", { href: "https://github.com/tanghaibao/jcvi/wiki/MCscan-(Python-version)", children: "(more info)" })] }), _jsxs("div", { children: [_jsx(FileSelector, { inline: true, name: value, location: fileLocation, setLocation: loc => {
99
- setFileLocation(loc);
100
- } }), _jsx(FileSelector, { inline: true, name: "genome 1 .bed (left column of anchors file)", description: "", location: bed1Location, setLocation: loc => {
101
- setBed1Location(loc);
102
- } }), _jsx(FileSelector, { inline: true, name: "genome 2 .bed (right column of anchors file)", description: "", location: bed2Location, setLocation: loc => {
103
- setBed2Location(loc);
104
- } })] }), _jsxs("div", { style: {
105
- margin: 'auto',
106
- display: 'flex',
107
- justifyContent: 'center',
108
- gap: 20,
109
- }, children: [_jsxs("div", { style: {
110
- display: 'grid',
111
- gridTemplateColumns: '1fr 1fr',
112
- gap: 4,
113
- alignItems: 'center',
114
- }, children: [_jsx("div", { children: _jsx("i", { children: swap ? assembly2 : assembly1 }) }), _jsx("div", { children: "bed1 assembly" }), _jsx("div", { children: _jsx("i", { children: swap ? assembly1 : assembly2 }) }), _jsx("div", { children: "bed2 assembly" })] }), _jsx(Button, { variant: "contained", onClick: () => {
115
- setSwap(!swap);
116
- }, children: "Swap?" })] })] })) : value === '.pif.gz' ? (_jsxs("div", { style: { display: 'flex' }, children: [_jsx("div", { children: _jsx(FileSelector, { name: `${value} location`, description: "", location: fileLocation, setLocation: loc => {
117
- setFileLocation(loc);
118
- } }) }), _jsx("div", { children: _jsx(FileSelector, { name: `${value} index location`, description: "", location: indexFileLocation, setLocation: loc => {
119
- setIndexFileLocation(loc);
120
- } }) })] })) : (_jsx(FileSelector, { name: value ? `${value} location` : '', description: "", location: fileLocation, setLocation: loc => {
121
- setFileLocation(loc);
122
- } })) })] }));
74
+ radioOption === '.chain' ? (_jsx(SyntenyFileSelector, { radioOption: radioOption, fileLocation: fileLocation, setFileLocation: setFileLocation, assembly1: assembly1, assembly2: assembly2, swap: swap, setSwap: setSwap })) : radioOption === '.anchors' || radioOption === '.anchors.simple' ? (_jsx(AnchorsFileSelector, { radioOption: radioOption, fileLocation: fileLocation, setFileLocation: setFileLocation, assembly1: assembly1, assembly2: assembly2, swap: swap, setSwap: setSwap, bed1Location: bed1Location, setBed1Location: setBed1Location, bed2Location: bed2Location, setBed2Location: setBed2Location })) : radioOption === '.pif.gz' ? (_jsx(PifGzSelector, { radioOption: radioOption, fileLocation: fileLocation, setFileLocation: setFileLocation, assembly1: assembly1, assembly2: assembly2, swap: swap, setSwap: setSwap, indexFileLocation: indexFileLocation, setIndexFileLocation: setIndexFileLocation })) : null })] }));
123
75
  });
124
76
  export default ImportSyntenyOpenCustomTrack;
package/esm/DotplotView/components/ImportForm/ImportSyntenyTrackSelector.js CHANGED
@@ -7,7 +7,7 @@ import { getSession } from '@jbrowse/core/util';
7
7
  import { getTrackName } from '@jbrowse/core/util/tracks';
8
8
  import { MenuItem, Paper, Select, Typography } from '@mui/material';
9
9
  import { observer } from 'mobx-react';
10
- function f(track, assembly1, assembly2) {
10
+ function isRelevantTrack(track, assembly1, assembly2) {
11
11
  const assemblyNames = readConfObject(track, 'assemblyNames');
12
12
  return (assemblyNames.includes(assembly1) &&
13
13
  assemblyNames.includes(assembly2) &&
@@ -21,7 +21,7 @@ const ImportSyntenyTrackSelector = observer(function ({ model, assembly1, assemb
21
21
  ...tracks,
22
22
  ...(sessionTracks || []),
23
23
  ];
24
- const filteredTracks = allTracks.filter(t => f(t, assembly2, assembly1));
24
+ const filteredTracks = allTracks.filter(t => isRelevantTrack(t, assembly2, assembly1));
25
25
  const resetTrack = ((_a = filteredTracks[0]) === null || _a === void 0 ? void 0 : _a.trackId) || '';
26
26
  const [value, setValue] = useState(resetTrack);
27
27
  useEffect(() => {
package/esm/DotplotView/components/ImportForm/selectors/AnchorsFileSelector.d.ts ADDED
@@ -0,0 +1,3 @@
1
+ import type { SelectorProps } from './SelectorTypes';
2
+ declare const AnchorsFileSelector: ({ assembly1, assembly2, swap, setSwap, fileLocation, setFileLocation, bed1Location, setBed1Location, bed2Location, setBed2Location, radioOption, }: SelectorProps) => import("react/jsx-runtime").JSX.Element;
3
+ export default AnchorsFileSelector;
package/esm/DotplotView/components/ImportForm/selectors/AnchorsFileSelector.js ADDED
@@ -0,0 +1,18 @@
1
+ import { jsx as _jsx, jsxs as _jsxs } from "react/jsx-runtime";
2
+ import { FileSelector } from '@jbrowse/core/ui';
3
+ import { observer } from 'mobx-react';
4
+ import SwapAssemblies from './SwapAssemblies';
5
+ const AnchorsFileSelector = observer(function ({ assembly1, assembly2, swap, setSwap, fileLocation, setFileLocation, bed1Location, setBed1Location, bed2Location, setBed2Location, radioOption, }) {
6
+ return (_jsxs("div", { children: [_jsxs("div", { style: { margin: 20 }, children: ["Open the ", radioOption, " and .bed files for both genome assemblies from the MCScan (Python version) pipeline", ' ', _jsx("a", { href: "https://github.com/tanghaibao/jcvi/wiki/MCscan-(Python-version)", children: "(more info)" })] }), _jsxs("div", { children: [_jsx(FileSelector, { inline: true, name: radioOption, location: fileLocation, setLocation: loc => {
7
+ setFileLocation(loc);
8
+ } }), _jsx(FileSelector, { inline: true, name: "genome 1 .bed (left column of anchors file)", description: "", location: bed1Location, setLocation: loc => {
9
+ if (setBed1Location) {
10
+ setBed1Location(loc);
11
+ }
12
+ } }), _jsx(FileSelector, { inline: true, name: "genome 2 .bed (right column of anchors file)", description: "", location: bed2Location, setLocation: loc => {
13
+ if (setBed2Location) {
14
+ setBed2Location(loc);
15
+ }
16
+ } })] }), _jsx(SwapAssemblies, { swap: swap, radioOption: radioOption, assembly1: assembly1, assembly2: assembly2, setSwap: setSwap, text1: "bed 1 assembly", text2: "bed 2 assembly" })] }));
17
+ });
18
+ export default AnchorsFileSelector;
package/esm/DotplotView/components/ImportForm/selectors/PifGzSelector.d.ts ADDED
@@ -0,0 +1,3 @@
1
+ import type { SelectorProps } from './SelectorTypes';
2
+ declare const PifGzSelector: ({ assembly1, assembly2, swap, setSwap, fileLocation, setFileLocation, indexFileLocation, setIndexFileLocation, radioOption, }: SelectorProps) => import("react/jsx-runtime").JSX.Element;
3
+ export default PifGzSelector;
package/esm/DotplotView/components/ImportForm/selectors/PifGzSelector.js ADDED
@@ -0,0 +1,8 @@
1
+ import { jsxs as _jsxs, jsx as _jsx } from "react/jsx-runtime";
2
+ import { FileSelector } from '@jbrowse/core/ui';
3
+ import { observer } from 'mobx-react';
4
+ import SwapAssemblies from './SwapAssemblies';
5
+ const PifGzSelector = observer(function ({ assembly1, assembly2, swap, setSwap, fileLocation, setFileLocation, indexFileLocation = undefined, setIndexFileLocation = () => { }, radioOption, }) {
6
+ return (_jsxs("div", { children: [_jsxs("div", { style: { margin: 20 }, children: ["Open the ", radioOption, " and .pif.gz and index file (.pif.gz.tbi or .pif.gz.csi) files for created by `jbrowse make-pif`"] }), _jsxs("div", { style: { maxWidth: 400, margin: '0 auto' }, children: [_jsx(FileSelector, { name: `${radioOption} location`, inline: true, description: "", location: fileLocation, setLocation: setFileLocation }), _jsx(FileSelector, { name: `${radioOption} index location (.tbi or .csi)`, inline: true, description: "", location: indexFileLocation, setLocation: setIndexFileLocation }), _jsx(SwapAssemblies, { swap: swap, radioOption: radioOption, assembly1: assembly1, assembly2: assembly2, setSwap: setSwap, text1: "query assembly", text2: "target assembly" })] })] }));
7
+ });
8
+ export default PifGzSelector;
package/esm/DotplotView/components/ImportForm/selectors/SelectorTypes.d.ts ADDED
@@ -0,0 +1,23 @@
1
+ import type { FileLocation } from '@jbrowse/core/util/types';
2
+ export declare const helpStrings: {
3
+ readonly '.paf': "minimap2 target.fa query.fa";
4
+ readonly '.pif.gz': "minimap2 target.fa query.fa";
5
+ readonly '.out': "mashmap target.fa query.fa";
6
+ readonly '.delta': "mummer target.fa query.fa";
7
+ readonly '.chain': "e.g. queryToTarget.chain";
8
+ };
9
+ export interface SelectorProps {
10
+ assembly1?: string;
11
+ assembly2?: string;
12
+ swap?: boolean;
13
+ setSwap?: (arg: boolean) => void;
14
+ fileLocation?: FileLocation;
15
+ setFileLocation: (arg: FileLocation) => void;
16
+ indexFileLocation?: FileLocation;
17
+ setIndexFileLocation?: (arg: FileLocation) => void;
18
+ bed1Location?: FileLocation;
19
+ setBed1Location?: (arg: FileLocation) => void;
20
+ bed2Location?: FileLocation;
21
+ setBed2Location?: (arg: FileLocation) => void;
22
+ radioOption: string;
23
+ }
package/esm/DotplotView/components/ImportForm/selectors/SelectorTypes.js ADDED
@@ -0,0 +1,7 @@
1
+ export const helpStrings = {
2
+ '.paf': 'minimap2 target.fa query.fa',
3
+ '.pif.gz': 'minimap2 target.fa query.fa',
4
+ '.out': 'mashmap target.fa query.fa',
5
+ '.delta': 'mummer target.fa query.fa',
6
+ '.chain': 'e.g. queryToTarget.chain',
7
+ };
package/esm/DotplotView/components/ImportForm/selectors/SwapAssemblies.d.ts ADDED
@@ -0,0 +1,13 @@
1
+ import type { ReactNode } from 'react';
2
+ export interface SwapAssembliesProps {
3
+ assembly1?: string;
4
+ assembly2?: string;
5
+ swap?: boolean;
6
+ setSwap?: (arg: boolean) => void;
7
+ radioOption: string;
8
+ helpContent?: ReactNode;
9
+ text1: string;
10
+ text2: string;
11
+ }
12
+ declare const SwapAssemblies: ({ assembly1, assembly2, swap, setSwap, radioOption, helpContent, text1, text2, }: SwapAssembliesProps) => import("react/jsx-runtime").JSX.Element;
13
+ export default SwapAssemblies;
package/esm/DotplotView/components/ImportForm/selectors/SwapAssemblies.js ADDED
@@ -0,0 +1,27 @@
1
+ import { jsx as _jsx, jsxs as _jsxs } from "react/jsx-runtime";
2
+ import HelpIcon from '@mui/icons-material/Help';
3
+ import { Button, Tooltip } from '@mui/material';
4
+ import { observer } from 'mobx-react';
5
+ import { makeStyles } from 'tss-react/mui';
6
+ import { helpStrings } from './SelectorTypes';
7
+ const useStyles = makeStyles()({
8
+ row: {
9
+ display: 'flex',
10
+ gap: 20,
11
+ },
12
+ swap: {
13
+ display: 'grid',
14
+ gridTemplateColumns: '1fr 1fr',
15
+ gap: 4,
16
+ alignItems: 'center',
17
+ },
18
+ });
19
+ const SwapAssemblies = observer(function ({ assembly1, assembly2, swap, setSwap, radioOption, helpContent, text1, text2, }) {
20
+ const { classes } = useStyles();
21
+ return (_jsxs("div", { children: [_jsxs("div", { children: ["Verify or click swap", _jsx(Tooltip, { title: helpContent || (_jsx("code", { children: helpStrings[radioOption] })), children: _jsx(HelpIcon, {}) })] }), _jsxs("div", { className: classes.row, children: [_jsxs("div", { className: classes.swap, children: [_jsx("div", { children: _jsx("i", { children: swap ? assembly2 : assembly1 }) }), _jsx("div", { children: text1 }), _jsx("div", { children: _jsx("i", { children: swap ? assembly1 : assembly2 }) }), _jsx("div", { children: text2 })] }), _jsx(Button, { variant: "contained", onClick: () => {
22
+ if (setSwap) {
23
+ setSwap(!swap);
24
+ }
25
+ }, children: "Swap?" })] })] }));
26
+ });
27
+ export default SwapAssemblies;
package/esm/DotplotView/components/ImportForm/selectors/SyntenyFileSelector.d.ts ADDED
@@ -0,0 +1,3 @@
1
+ import type { SelectorProps } from './SelectorTypes';
2
+ declare const SyntenyFileSelector: ({ assembly1, assembly2, swap, setSwap, fileLocation, setFileLocation, radioOption, }: SelectorProps) => import("react/jsx-runtime").JSX.Element;
3
+ export default SyntenyFileSelector;
package/esm/DotplotView/components/ImportForm/selectors/SyntenyFileSelector.js ADDED
@@ -0,0 +1,19 @@
1
+ import { jsx as _jsx, jsxs as _jsxs } from "react/jsx-runtime";
2
+ import { FileSelector } from '@jbrowse/core/ui';
3
+ import { observer } from 'mobx-react';
4
+ import { makeStyles } from 'tss-react/mui';
5
+ import SwapAssemblies from './SwapAssemblies';
6
+ const useStyles = makeStyles()({
7
+ container: {
8
+ display: 'flex',
9
+ flexDirection: 'column',
10
+ gap: 10,
11
+ },
12
+ });
13
+ const SyntenyFileSelector = observer(function ({ assembly1, assembly2, swap, setSwap, fileLocation, setFileLocation, radioOption, }) {
14
+ const { classes } = useStyles();
15
+ return (_jsxs("div", { className: classes.container, children: [_jsx(FileSelector, { name: `${radioOption} location`, inline: true, description: "", location: fileLocation, setLocation: loc => {
16
+ setFileLocation(loc);
17
+ } }), _jsx(SwapAssemblies, { assembly1: assembly1, assembly2: assembly2, swap: swap, setSwap: setSwap, radioOption: radioOption, text1: "query assembly", text2: "target assembly" })] }));
18
+ });
19
+ export default SyntenyFileSelector;
package/esm/DotplotView/components/ImportForm/selectors/index.d.ts ADDED
@@ -0,0 +1,3 @@
1
+ export { default as AnchorsFileSelector } from './AnchorsFileSelector';
2
+ export { default as PifGzSelector } from './PifGzSelector';
3
+ export { default as SyntenyFileSelector } from './SyntenyFileSelector';
package/esm/DotplotView/components/ImportForm/selectors/index.js ADDED
@@ -0,0 +1,3 @@
1
+ export { default as AnchorsFileSelector } from './AnchorsFileSelector';
2
+ export { default as PifGzSelector } from './PifGzSelector';
3
+ export { default as SyntenyFileSelector } from './SyntenyFileSelector';
package/package.json CHANGED
@@ -1,6 +1,6 @@
1
1
  {
2
2
  "name": "@jbrowse/plugin-dotplot-view",
3
- "version": "3.5.1",
3
+ "version": "3.6.0",
4
4
  "description": "JBrowse 2 dotplot view",
5
5
  "keywords": [
6
6
  "jbrowse",
@@ -36,8 +36,8 @@
36
36
  "clean": "rimraf dist esm *.tsbuildinfo"
37
37
  },
38
38
  "dependencies": {
39
- "@jbrowse/core": "^3.5.1",
40
- "@jbrowse/plugin-alignments": "^3.5.1",
39
+ "@jbrowse/core": "^3.6.0",
40
+ "@jbrowse/plugin-alignments": "^3.6.0",
41
41
  "@mui/icons-material": "^7.0.0",
42
42
  "@mui/material": "^7.0.0",
43
43
  "@mui/x-data-grid": "^8.0.0",
@@ -59,5 +59,5 @@
59
59
  "publishConfig": {
60
60
  "access": "public"
61
61
  },
62
- "gitHead": "cb8859da9d838ad2594964777c5c54f385d98f5e"
62
+ "gitHead": "133a68815ab348d156c18d83cffc997356c3cfbb"
63
63
  }