@jbrowse/plugin-dotplot-view 2.7.1 → 2.7.2

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (23) hide show
  1. package/dist/DotplotView/components/DotplotView.js +4 -0
  2. package/dist/DotplotView/components/{ImportCustomTrack.js → ImportForm/ImportCustomTrack.js} +5 -21
  3. package/dist/DotplotView/components/{ImportSyntenyTrackSelector.d.ts → ImportForm/ImportSyntenyTrackSelector.d.ts} +1 -1
  4. package/{esm/DotplotView/components/ImportForm.d.ts → dist/DotplotView/components/ImportForm/index.d.ts} +1 -1
  5. package/dist/DotplotView/components/ImportForm/util.d.ts +10 -0
  6. package/dist/DotplotView/components/ImportForm/util.js +27 -0
  7. package/dist/DotplotView/model.d.ts +70 -37
  8. package/dist/DotplotView/model.js +1 -1
  9. package/esm/DotplotView/components/DotplotView.js +4 -0
  10. package/esm/DotplotView/components/{ImportCustomTrack.js → ImportForm/ImportCustomTrack.js} +4 -17
  11. package/esm/DotplotView/components/{ImportSyntenyTrackSelector.d.ts → ImportForm/ImportSyntenyTrackSelector.d.ts} +1 -1
  12. package/{dist/DotplotView/components/ImportForm.d.ts → esm/DotplotView/components/ImportForm/index.d.ts} +1 -1
  13. package/esm/DotplotView/components/ImportForm/util.d.ts +10 -0
  14. package/esm/DotplotView/components/ImportForm/util.js +20 -0
  15. package/esm/DotplotView/model.d.ts +70 -37
  16. package/esm/DotplotView/model.js +1 -1
  17. package/package.json +2 -2
  18. /package/dist/DotplotView/components/{ImportCustomTrack.d.ts → ImportForm/ImportCustomTrack.d.ts} +0 -0
  19. /package/dist/DotplotView/components/{ImportSyntenyTrackSelector.js → ImportForm/ImportSyntenyTrackSelector.js} +0 -0
  20. /package/dist/DotplotView/components/{ImportForm.js → ImportForm/index.js} +0 -0
  21. /package/esm/DotplotView/components/{ImportCustomTrack.d.ts → ImportForm/ImportCustomTrack.d.ts} +0 -0
  22. /package/esm/DotplotView/components/{ImportSyntenyTrackSelector.js → ImportForm/ImportSyntenyTrackSelector.js} +0 -0
  23. /package/esm/DotplotView/components/{ImportForm.js → ImportForm/index.js} +0 -0
@@ -245,6 +245,8 @@ const DotplotViewInternal = (0, mobx_react_1.observer)(function ({ model, }) {
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  if (mousedown && mouseup) {
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  model.zoomIn(mousedown, mouseup);
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  }
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+ // below line is needed to prevent tooltip from sticking
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+ setMouseOvered(false);
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  },
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  },
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  {
@@ -253,6 +255,8 @@ const DotplotViewInternal = (0, mobx_react_1.observer)(function ({ model, }) {
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  if (mousedown && mouseup) {
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  model.onDotplotView(mousedown, mouseup);
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  }
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+ // below line is needed to prevent tooltip from sticking
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+ setMouseOvered(false);
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  },
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  },
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  ] })),
@@ -22,28 +22,12 @@ var __importStar = (this && this.__importStar) || function (mod) {
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  __setModuleDefault(result, mod);
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  return result;
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  };
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- var __importDefault = (this && this.__importDefault) || function (mod) {
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- return (mod && mod.__esModule) ? mod : { "default": mod };
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- };
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  Object.defineProperty(exports, "__esModule", { value: true });
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  const react_1 = __importStar(require("react"));
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- const path_1 = __importDefault(require("path"));
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  const material_1 = require("@mui/material");
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  const ui_1 = require("@jbrowse/core/ui");
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  const mobx_react_1 = require("mobx-react");
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- function getName(sessionTrackData) {
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- return sessionTrackData
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- ? // @ts-expect-error
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- sessionTrackData.uri ||
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- // @ts-expect-error
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- sessionTrackData.localPath ||
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- // @ts-expect-error
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- sessionTrackData.name
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- : undefined;
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- }
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- function stripGz(fileName) {
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- return fileName.endsWith('.gz') ? fileName.slice(0, -3) : fileName;
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- }
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+ const util_1 = require("./util");
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  function getAdapter({ radioOption, assembly1, assembly2, fileLocation, bed1Location, bed2Location, }) {
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  if (radioOption === '.paf') {
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  return {
@@ -96,7 +80,7 @@ function getAdapter({ radioOption, assembly1, assembly2, fileLocation, bed1Locat
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  };
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  }
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  else {
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- throw new Error('Unknown type');
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+ throw new Error(`Unknown to detect type ${radioOption} from filename (select radio button to clarify)`);
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  }
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  }
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  const OpenTrack = (0, mobx_react_1.observer)(({ assembly1, assembly2, setSessionTrackData, }) => {
@@ -105,12 +89,12 @@ const OpenTrack = (0, mobx_react_1.observer)(({ assembly1, assembly2, setSession
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  const [fileLocation, setFileLocation] = (0, react_1.useState)();
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  const [value, setValue] = (0, react_1.useState)('');
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  const [error, setError] = (0, react_1.useState)();
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- const fileName = getName(fileLocation);
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- const radioOption = value || (fileName ? path_1.default.extname(stripGz(fileName)) : '');
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+ const fileName = (0, util_1.getName)(fileLocation);
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+ const radioOption = value || (fileName ? (0, util_1.extName)((0, util_1.stripGz)(fileName)) : '');
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  (0, react_1.useEffect)(() => {
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  try {
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  if (fileLocation) {
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- const fn = fileName ? path_1.default.basename(fileName) : 'MyTrack';
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+ const fn = fileName ? (0, util_1.basename)(fileName) : 'MyTrack';
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  const trackId = `${fn}-${Date.now()}`;
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  setError(undefined);
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  setSessionTrackData({
@@ -1,5 +1,5 @@
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  import React from 'react';
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- import { DotplotViewModel } from '../model';
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+ import { DotplotViewModel } from '../../model';
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  declare const Selector: ({ model, assembly1, assembly2, setShowTrackId, }: {
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  model: DotplotViewModel;
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  assembly1: string;
@@ -1,5 +1,5 @@
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  import React from 'react';
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- import { DotplotViewModel } from '../model';
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+ import { DotplotViewModel } from '../../model';
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  declare const DotplotImportForm: ({ model }: {
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  model: DotplotViewModel;
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  }) => React.JSX.Element;
@@ -0,0 +1,10 @@
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+ export declare function getName(sessionTrackData?: {
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+ uri: string;
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+ } | {
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+ localPath: string;
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+ } | {
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+ name: string;
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+ }): any;
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+ export declare function stripGz(fileName: string): string;
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+ export declare function basename(str: string): string | undefined;
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+ export declare function extName(str: string): string;
@@ -0,0 +1,27 @@
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+ "use strict";
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+ Object.defineProperty(exports, "__esModule", { value: true });
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+ exports.extName = exports.basename = exports.stripGz = exports.getName = void 0;
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+ function getName(sessionTrackData) {
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+ return sessionTrackData
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+ ? // @ts-expect-error
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+ sessionTrackData.uri ||
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+ // @ts-expect-error
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+ sessionTrackData.localPath ||
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+ // @ts-expect-error
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+ sessionTrackData.name
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+ : undefined;
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+ }
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+ exports.getName = getName;
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+ function stripGz(fileName) {
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+ return fileName.endsWith('.gz') ? fileName.slice(0, -3) : fileName;
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+ }
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+ exports.stripGz = stripGz;
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+ function basename(str) {
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+ return str.split('#')[0].split('?')[0].split('/').pop();
21
+ }
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+ exports.basename = basename;
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+ function extName(str) {
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+ const r = str.split('.').pop();
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+ return r ? `.${r}` : '';
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+ }
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+ exports.extName = extName;
@@ -68,17 +68,25 @@ export default function stateModelFactory(pm: PluginManager): import("mobx-state
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  } & {
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  readonly dynamicBlocks: import("@jbrowse/core/util/blockTypes").BlockSet;
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  readonly staticBlocks: import("@jbrowse/core/util/blockTypes").BlockSet;
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- readonly currBp: number;
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+ readonly currBp: number; /**
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+ * #property
73
+ */
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  } & {
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  pxToBp(px: number): {
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- coord: number;
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+ coord: number; /**
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+ * #property
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+ */
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  index: number;
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  refName: string;
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  oob: boolean;
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- assemblyName: string;
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+ assemblyName: string; /**
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+ * #property
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+ */
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  offset: number;
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  start: number;
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- end: number;
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+ end: number; /**
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+ * #property
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+ */
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  reversed: boolean;
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  };
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  bpToPx({ refName, coord, regionNumber, }: {
@@ -86,9 +94,7 @@ export default function stateModelFactory(pm: PluginManager): import("mobx-state
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  * #property
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  */
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  coord: number;
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- regionNumber?: number | undefined; /**
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- * #property
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- */
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+ regionNumber?: number | undefined;
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  }): number | undefined;
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  } & {
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  setFeatures(features: import("@jbrowse/core/util").Feature[]): void;
@@ -153,17 +159,25 @@ export default function stateModelFactory(pm: PluginManager): import("mobx-state
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  } & {
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  readonly dynamicBlocks: import("@jbrowse/core/util/blockTypes").BlockSet;
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  readonly staticBlocks: import("@jbrowse/core/util/blockTypes").BlockSet;
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- readonly currBp: number;
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+ readonly currBp: number; /**
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+ * #property
164
+ */
157
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  } & {
158
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  pxToBp(px: number): {
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- coord: number;
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+ coord: number; /**
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+ * #property
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+ */
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  index: number;
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  refName: string;
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  oob: boolean;
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- assemblyName: string;
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+ assemblyName: string; /**
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+ * #property
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+ */
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  offset: number;
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  start: number;
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- end: number;
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+ end: number; /**
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+ * #property
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+ */
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  reversed: boolean;
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  };
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  bpToPx({ refName, coord, regionNumber, }: {
@@ -171,9 +185,7 @@ export default function stateModelFactory(pm: PluginManager): import("mobx-state
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  * #property
172
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  */
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  coord: number;
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- regionNumber?: number | undefined; /**
175
- * #property
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- */
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+ regionNumber?: number | undefined;
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  }): number | undefined;
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  } & {
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  setFeatures(features: import("@jbrowse/core/util").Feature[]): void;
@@ -220,20 +232,23 @@ export default function stateModelFactory(pm: PluginManager): import("mobx-state
220
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  } & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>) | undefined;
221
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  } & {
222
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  setMinimized(flag: boolean): void;
223
- showDisplay(displayId: string, initialSnapshot?: {} | undefined): void; /**
235
+ showDisplay(displayId: string, initialSnapshot?: {} | undefined): void;
236
+ /**
237
+ * #property
238
+ */
239
+ hideDisplay(displayId: string): number; /**
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  * #property
225
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  */
226
- hideDisplay(displayId: string): number;
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  replaceDisplay(oldId: string, newId: string, initialSnapshot?: {} | undefined): void;
228
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  } & {
229
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  trackMenuItems(): (import("@jbrowse/core/ui").MenuDivider | import("@jbrowse/core/ui").MenuSubHeader | import("@jbrowse/core/ui").NormalMenuItem | import("@jbrowse/core/ui").CheckboxMenuItem | import("@jbrowse/core/ui").RadioMenuItem | import("@jbrowse/core/ui").SubMenuItem | {
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  type: string;
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- label: string; /**
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- * #property
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- */
246
+ label: string;
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  subMenu: {
235
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  type: string;
236
- label: string;
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+ label: string; /**
250
+ * #property
251
+ */
237
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  checked: boolean;
238
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  onClick: () => void;
239
254
  }[];
@@ -356,17 +371,25 @@ export default function stateModelFactory(pm: PluginManager): import("mobx-state
356
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  } & {
357
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  readonly dynamicBlocks: import("@jbrowse/core/util/blockTypes").BlockSet;
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  readonly staticBlocks: import("@jbrowse/core/util/blockTypes").BlockSet;
359
- readonly currBp: number;
374
+ readonly currBp: number; /**
375
+ * #property
376
+ */
360
377
  } & {
361
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  pxToBp(px: number): {
362
- coord: number;
379
+ coord: number; /**
380
+ * #property
381
+ */
363
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  index: number;
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  refName: string;
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  oob: boolean;
366
- assemblyName: string;
385
+ assemblyName: string; /**
386
+ * #property
387
+ */
367
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  offset: number;
368
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  start: number;
369
- end: number;
390
+ end: number; /**
391
+ * #property
392
+ */
370
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  reversed: boolean;
371
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  };
372
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  bpToPx({ refName, coord, regionNumber, }: {
@@ -374,9 +397,7 @@ export default function stateModelFactory(pm: PluginManager): import("mobx-state
374
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  * #property
375
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  */
376
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  coord: number;
377
- regionNumber?: number | undefined; /**
378
- * #property
379
- */
400
+ regionNumber?: number | undefined;
380
401
  }): number | undefined;
381
402
  } & {
382
403
  setFeatures(features: import("@jbrowse/core/util").Feature[]): void;
@@ -440,17 +461,25 @@ export default function stateModelFactory(pm: PluginManager): import("mobx-state
440
461
  } & {
441
462
  readonly dynamicBlocks: import("@jbrowse/core/util/blockTypes").BlockSet;
442
463
  readonly staticBlocks: import("@jbrowse/core/util/blockTypes").BlockSet;
443
- readonly currBp: number;
464
+ readonly currBp: number; /**
465
+ * #property
466
+ */
444
467
  } & {
445
468
  pxToBp(px: number): {
446
- coord: number;
469
+ coord: number; /**
470
+ * #property
471
+ */
447
472
  index: number;
448
473
  refName: string;
449
474
  oob: boolean;
450
- assemblyName: string;
475
+ assemblyName: string; /**
476
+ * #property
477
+ */
451
478
  offset: number;
452
479
  start: number;
453
- end: number;
480
+ end: number; /**
481
+ * #property
482
+ */
454
483
  reversed: boolean;
455
484
  };
456
485
  bpToPx({ refName, coord, regionNumber, }: {
@@ -458,9 +487,7 @@ export default function stateModelFactory(pm: PluginManager): import("mobx-state
458
487
  * #property
459
488
  */
460
489
  coord: number;
461
- regionNumber?: number | undefined; /**
462
- * #property
463
- */
490
+ regionNumber?: number | undefined;
464
491
  }): number | undefined;
465
492
  } & {
466
493
  setFeatures(features: import("@jbrowse/core/util").Feature[]): void;
@@ -576,14 +603,20 @@ export default function stateModelFactory(pm: PluginManager): import("mobx-state
576
603
  * #action
577
604
  */
578
605
  getCoords(mousedown: Coord, mouseup: Coord): {
579
- coord: number;
606
+ coord: number; /**
607
+ * #property
608
+ */
580
609
  index: number;
581
610
  refName: string;
582
611
  oob: boolean;
583
- assemblyName: string;
612
+ assemblyName: string; /**
613
+ * #property
614
+ */
584
615
  offset: number;
585
616
  start: number;
586
- end: number;
617
+ end: number; /**
618
+ * #property
619
+ */
587
620
  reversed: boolean;
588
621
  }[] | undefined;
589
622
  /**
@@ -62,7 +62,7 @@ const pxWidthForBlocks = (blocks, hide) => {
62
62
  */
63
63
  function stateModelFactory(pm) {
64
64
  return mobx_state_tree_1.types
65
- .compose(BaseViewModel_1.default, mobx_state_tree_1.types.model('DotplotView', {
65
+ .compose('DotplotView', BaseViewModel_1.default, mobx_state_tree_1.types.model({
66
66
  /**
67
67
  * #property
68
68
  */
@@ -217,6 +217,8 @@ const DotplotViewInternal = observer(function ({ model, }) {
217
217
  if (mousedown && mouseup) {
218
218
  model.zoomIn(mousedown, mouseup);
219
219
  }
220
+ // below line is needed to prevent tooltip from sticking
221
+ setMouseOvered(false);
220
222
  },
221
223
  },
222
224
  {
@@ -225,6 +227,8 @@ const DotplotViewInternal = observer(function ({ model, }) {
225
227
  if (mousedown && mouseup) {
226
228
  model.onDotplotView(mousedown, mouseup);
227
229
  }
230
+ // below line is needed to prevent tooltip from sticking
231
+ setMouseOvered(false);
228
232
  },
229
233
  },
230
234
  ] })),
@@ -1,21 +1,8 @@
1
1
  import React, { useState, useEffect } from 'react';
2
- import path from 'path';
3
2
  import { FormControlLabel, Grid, Paper, Radio, RadioGroup, Typography, } from '@mui/material';
4
3
  import { ErrorMessage, FileSelector } from '@jbrowse/core/ui';
5
4
  import { observer } from 'mobx-react';
6
- function getName(sessionTrackData) {
7
- return sessionTrackData
8
- ? // @ts-expect-error
9
- sessionTrackData.uri ||
10
- // @ts-expect-error
11
- sessionTrackData.localPath ||
12
- // @ts-expect-error
13
- sessionTrackData.name
14
- : undefined;
15
- }
16
- function stripGz(fileName) {
17
- return fileName.endsWith('.gz') ? fileName.slice(0, -3) : fileName;
18
- }
5
+ import { basename, extName, getName, stripGz } from './util';
19
6
  function getAdapter({ radioOption, assembly1, assembly2, fileLocation, bed1Location, bed2Location, }) {
20
7
  if (radioOption === '.paf') {
21
8
  return {
@@ -68,7 +55,7 @@ function getAdapter({ radioOption, assembly1, assembly2, fileLocation, bed1Locat
68
55
  };
69
56
  }
70
57
  else {
71
- throw new Error('Unknown type');
58
+ throw new Error(`Unknown to detect type ${radioOption} from filename (select radio button to clarify)`);
72
59
  }
73
60
  }
74
61
  const OpenTrack = observer(({ assembly1, assembly2, setSessionTrackData, }) => {
@@ -78,11 +65,11 @@ const OpenTrack = observer(({ assembly1, assembly2, setSessionTrackData, }) => {
78
65
  const [value, setValue] = useState('');
79
66
  const [error, setError] = useState();
80
67
  const fileName = getName(fileLocation);
81
- const radioOption = value || (fileName ? path.extname(stripGz(fileName)) : '');
68
+ const radioOption = value || (fileName ? extName(stripGz(fileName)) : '');
82
69
  useEffect(() => {
83
70
  try {
84
71
  if (fileLocation) {
85
- const fn = fileName ? path.basename(fileName) : 'MyTrack';
72
+ const fn = fileName ? basename(fileName) : 'MyTrack';
86
73
  const trackId = `${fn}-${Date.now()}`;
87
74
  setError(undefined);
88
75
  setSessionTrackData({
@@ -1,5 +1,5 @@
1
1
  import React from 'react';
2
- import { DotplotViewModel } from '../model';
2
+ import { DotplotViewModel } from '../../model';
3
3
  declare const Selector: ({ model, assembly1, assembly2, setShowTrackId, }: {
4
4
  model: DotplotViewModel;
5
5
  assembly1: string;
@@ -1,5 +1,5 @@
1
1
  import React from 'react';
2
- import { DotplotViewModel } from '../model';
2
+ import { DotplotViewModel } from '../../model';
3
3
  declare const DotplotImportForm: ({ model }: {
4
4
  model: DotplotViewModel;
5
5
  }) => React.JSX.Element;
@@ -0,0 +1,10 @@
1
+ export declare function getName(sessionTrackData?: {
2
+ uri: string;
3
+ } | {
4
+ localPath: string;
5
+ } | {
6
+ name: string;
7
+ }): any;
8
+ export declare function stripGz(fileName: string): string;
9
+ export declare function basename(str: string): string | undefined;
10
+ export declare function extName(str: string): string;
@@ -0,0 +1,20 @@
1
+ export function getName(sessionTrackData) {
2
+ return sessionTrackData
3
+ ? // @ts-expect-error
4
+ sessionTrackData.uri ||
5
+ // @ts-expect-error
6
+ sessionTrackData.localPath ||
7
+ // @ts-expect-error
8
+ sessionTrackData.name
9
+ : undefined;
10
+ }
11
+ export function stripGz(fileName) {
12
+ return fileName.endsWith('.gz') ? fileName.slice(0, -3) : fileName;
13
+ }
14
+ export function basename(str) {
15
+ return str.split('#')[0].split('?')[0].split('/').pop();
16
+ }
17
+ export function extName(str) {
18
+ const r = str.split('.').pop();
19
+ return r ? `.${r}` : '';
20
+ }
@@ -68,17 +68,25 @@ export default function stateModelFactory(pm: PluginManager): import("mobx-state
68
68
  } & {
69
69
  readonly dynamicBlocks: import("@jbrowse/core/util/blockTypes").BlockSet;
70
70
  readonly staticBlocks: import("@jbrowse/core/util/blockTypes").BlockSet;
71
- readonly currBp: number;
71
+ readonly currBp: number; /**
72
+ * #property
73
+ */
72
74
  } & {
73
75
  pxToBp(px: number): {
74
- coord: number;
76
+ coord: number; /**
77
+ * #property
78
+ */
75
79
  index: number;
76
80
  refName: string;
77
81
  oob: boolean;
78
- assemblyName: string;
82
+ assemblyName: string; /**
83
+ * #property
84
+ */
79
85
  offset: number;
80
86
  start: number;
81
- end: number;
87
+ end: number; /**
88
+ * #property
89
+ */
82
90
  reversed: boolean;
83
91
  };
84
92
  bpToPx({ refName, coord, regionNumber, }: {
@@ -86,9 +94,7 @@ export default function stateModelFactory(pm: PluginManager): import("mobx-state
86
94
  * #property
87
95
  */
88
96
  coord: number;
89
- regionNumber?: number | undefined; /**
90
- * #property
91
- */
97
+ regionNumber?: number | undefined;
92
98
  }): number | undefined;
93
99
  } & {
94
100
  setFeatures(features: import("@jbrowse/core/util").Feature[]): void;
@@ -153,17 +159,25 @@ export default function stateModelFactory(pm: PluginManager): import("mobx-state
153
159
  } & {
154
160
  readonly dynamicBlocks: import("@jbrowse/core/util/blockTypes").BlockSet;
155
161
  readonly staticBlocks: import("@jbrowse/core/util/blockTypes").BlockSet;
156
- readonly currBp: number;
162
+ readonly currBp: number; /**
163
+ * #property
164
+ */
157
165
  } & {
158
166
  pxToBp(px: number): {
159
- coord: number;
167
+ coord: number; /**
168
+ * #property
169
+ */
160
170
  index: number;
161
171
  refName: string;
162
172
  oob: boolean;
163
- assemblyName: string;
173
+ assemblyName: string; /**
174
+ * #property
175
+ */
164
176
  offset: number;
165
177
  start: number;
166
- end: number;
178
+ end: number; /**
179
+ * #property
180
+ */
167
181
  reversed: boolean;
168
182
  };
169
183
  bpToPx({ refName, coord, regionNumber, }: {
@@ -171,9 +185,7 @@ export default function stateModelFactory(pm: PluginManager): import("mobx-state
171
185
  * #property
172
186
  */
173
187
  coord: number;
174
- regionNumber?: number | undefined; /**
175
- * #property
176
- */
188
+ regionNumber?: number | undefined;
177
189
  }): number | undefined;
178
190
  } & {
179
191
  setFeatures(features: import("@jbrowse/core/util").Feature[]): void;
@@ -220,20 +232,23 @@ export default function stateModelFactory(pm: PluginManager): import("mobx-state
220
232
  } & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>) | undefined;
221
233
  } & {
222
234
  setMinimized(flag: boolean): void;
223
- showDisplay(displayId: string, initialSnapshot?: {} | undefined): void; /**
235
+ showDisplay(displayId: string, initialSnapshot?: {} | undefined): void;
236
+ /**
237
+ * #property
238
+ */
239
+ hideDisplay(displayId: string): number; /**
224
240
  * #property
225
241
  */
226
- hideDisplay(displayId: string): number;
227
242
  replaceDisplay(oldId: string, newId: string, initialSnapshot?: {} | undefined): void;
228
243
  } & {
229
244
  trackMenuItems(): (import("@jbrowse/core/ui").MenuDivider | import("@jbrowse/core/ui").MenuSubHeader | import("@jbrowse/core/ui").NormalMenuItem | import("@jbrowse/core/ui").CheckboxMenuItem | import("@jbrowse/core/ui").RadioMenuItem | import("@jbrowse/core/ui").SubMenuItem | {
230
245
  type: string;
231
- label: string; /**
232
- * #property
233
- */
246
+ label: string;
234
247
  subMenu: {
235
248
  type: string;
236
- label: string;
249
+ label: string; /**
250
+ * #property
251
+ */
237
252
  checked: boolean;
238
253
  onClick: () => void;
239
254
  }[];
@@ -356,17 +371,25 @@ export default function stateModelFactory(pm: PluginManager): import("mobx-state
356
371
  } & {
357
372
  readonly dynamicBlocks: import("@jbrowse/core/util/blockTypes").BlockSet;
358
373
  readonly staticBlocks: import("@jbrowse/core/util/blockTypes").BlockSet;
359
- readonly currBp: number;
374
+ readonly currBp: number; /**
375
+ * #property
376
+ */
360
377
  } & {
361
378
  pxToBp(px: number): {
362
- coord: number;
379
+ coord: number; /**
380
+ * #property
381
+ */
363
382
  index: number;
364
383
  refName: string;
365
384
  oob: boolean;
366
- assemblyName: string;
385
+ assemblyName: string; /**
386
+ * #property
387
+ */
367
388
  offset: number;
368
389
  start: number;
369
- end: number;
390
+ end: number; /**
391
+ * #property
392
+ */
370
393
  reversed: boolean;
371
394
  };
372
395
  bpToPx({ refName, coord, regionNumber, }: {
@@ -374,9 +397,7 @@ export default function stateModelFactory(pm: PluginManager): import("mobx-state
374
397
  * #property
375
398
  */
376
399
  coord: number;
377
- regionNumber?: number | undefined; /**
378
- * #property
379
- */
400
+ regionNumber?: number | undefined;
380
401
  }): number | undefined;
381
402
  } & {
382
403
  setFeatures(features: import("@jbrowse/core/util").Feature[]): void;
@@ -440,17 +461,25 @@ export default function stateModelFactory(pm: PluginManager): import("mobx-state
440
461
  } & {
441
462
  readonly dynamicBlocks: import("@jbrowse/core/util/blockTypes").BlockSet;
442
463
  readonly staticBlocks: import("@jbrowse/core/util/blockTypes").BlockSet;
443
- readonly currBp: number;
464
+ readonly currBp: number; /**
465
+ * #property
466
+ */
444
467
  } & {
445
468
  pxToBp(px: number): {
446
- coord: number;
469
+ coord: number; /**
470
+ * #property
471
+ */
447
472
  index: number;
448
473
  refName: string;
449
474
  oob: boolean;
450
- assemblyName: string;
475
+ assemblyName: string; /**
476
+ * #property
477
+ */
451
478
  offset: number;
452
479
  start: number;
453
- end: number;
480
+ end: number; /**
481
+ * #property
482
+ */
454
483
  reversed: boolean;
455
484
  };
456
485
  bpToPx({ refName, coord, regionNumber, }: {
@@ -458,9 +487,7 @@ export default function stateModelFactory(pm: PluginManager): import("mobx-state
458
487
  * #property
459
488
  */
460
489
  coord: number;
461
- regionNumber?: number | undefined; /**
462
- * #property
463
- */
490
+ regionNumber?: number | undefined;
464
491
  }): number | undefined;
465
492
  } & {
466
493
  setFeatures(features: import("@jbrowse/core/util").Feature[]): void;
@@ -576,14 +603,20 @@ export default function stateModelFactory(pm: PluginManager): import("mobx-state
576
603
  * #action
577
604
  */
578
605
  getCoords(mousedown: Coord, mouseup: Coord): {
579
- coord: number;
606
+ coord: number; /**
607
+ * #property
608
+ */
580
609
  index: number;
581
610
  refName: string;
582
611
  oob: boolean;
583
- assemblyName: string;
612
+ assemblyName: string; /**
613
+ * #property
614
+ */
584
615
  offset: number;
585
616
  start: number;
586
- end: number;
617
+ end: number; /**
618
+ * #property
619
+ */
587
620
  reversed: boolean;
588
621
  }[] | undefined;
589
622
  /**
@@ -33,7 +33,7 @@ const pxWidthForBlocks = (blocks, hide) => {
33
33
  */
34
34
  export default function stateModelFactory(pm) {
35
35
  return types
36
- .compose(BaseViewModel, types.model('DotplotView', {
36
+ .compose('DotplotView', BaseViewModel, types.model({
37
37
  /**
38
38
  * #property
39
39
  */
package/package.json CHANGED
@@ -1,6 +1,6 @@
1
1
  {
2
2
  "name": "@jbrowse/plugin-dotplot-view",
3
- "version": "2.7.1",
3
+ "version": "2.7.2",
4
4
  "description": "JBrowse 2 dotplot view",
5
5
  "keywords": [
6
6
  "jbrowse",
@@ -64,5 +64,5 @@
64
64
  "publishConfig": {
65
65
  "access": "public"
66
66
  },
67
- "gitHead": "2cda1611eebd12517f2a3cfc1b612face27005d4"
67
+ "gitHead": "9052b295f2d322e729254457ed9fe2231fb22cce"
68
68
  }