@jbrowse/plugin-dotplot-view 2.17.0 → 3.0.0

package/dist/DotplotView/model.d.ts

@@ -1,8 +1,9 @@
-import React from 'react';
-import { Instance, SnapshotIn } from 'mobx-state-tree';
-import { Base1DViewModel } from '@jbrowse/core/util/Base1DViewModel';
-import PluginManager from '@jbrowse/core/PluginManager';
+import type React from 'react';
 import { TrackSelector as TrackSelectorIcon } from '@jbrowse/core/ui/Icons';
+import type { ImportFormSyntenyTrack } from './types';
+import type PluginManager from '@jbrowse/core/PluginManager';
+import type { Base1DViewModel } from '@jbrowse/core/util/Base1DViewModel';
+import type { Instance, SnapshotIn } from 'mobx-state-tree';
 type Coord = [number, number];
 export interface ExportSvgOptions {
     rasterizeLayers?: boolean;
@@ -12,12 +13,6 @@ export interface ExportSvgOptions {
     }>;
     themeName?: string;
 }
-/**
- * #stateModel DotplotView
- * #category view
- * extends
- * - [BaseViewModel](../baseviewmodel)
- */
 export default function stateModelFactory(pm: PluginManager): import("mobx-state-tree").IModelType<{
     id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
     displayName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
@@ -220,58 +215,33 @@ export default function stateModelFactory(pm: PluginManager): import("mobx-state
     wheelMode: string;
     borderX: number;
     borderY: number;
+    importFormSyntenyTrackSelections: import("mobx").IObservableArray<ImportFormSyntenyTrack>;
+} & {
+    importFormRemoveRow(idx: number): void;
+    clearImportFormSyntenyTracks(): void;
+    setImportFormSyntenyTrack(arg: number, val: ImportFormSyntenyTrack): void;
 } & {
-    /**
-     * #getter
-     */
     readonly width: number;
 } & {
-    /**
-     * #getter
-     */
     readonly assemblyErrors: string;
-    /**
-     * #getter
-     */
     readonly assembliesInitialized: boolean;
 } & {
-    /**
-     * #getter
-     */
     readonly initialized: boolean;
-    /**
-     * #getter
-     */
     readonly hticks: {
         type: string;
         base: number;
         index: number;
         refName: string;
     }[];
-    /**
-     * #getter
-     */
     readonly vticks: {
         type: string;
         base: number;
         index: number;
         refName: string;
     }[];
-    /**
-     * #getter
-     */
     readonly loading: boolean;
-    /**
-     * #getter
-     */
     readonly viewWidth: number;
-    /**
-     * #getter
-     */
     readonly viewHeight: number;
-    /**
-     * #getter
-     */
     readonly views: ({
         id: string;
         displayedRegions: import("@jbrowse/core/util").Region[] & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").IType<import("@jbrowse/core/util").Region[], import("@jbrowse/core/util").Region[], import("@jbrowse/core/util").Region[]>, [undefined]>>;
@@ -403,87 +373,26 @@ export default function stateModelFactory(pm: PluginManager): import("mobx-state
     } & {
         readonly width: any;
     }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>, [undefined]>>)[];
-    /**
-     * #method
-     */
     renderProps(): any;
 } & {
-    /**
-     * #action
-     */
     setShowPanButtons(flag: boolean): void;
-    /**
-     * #action
-     */
     setWheelMode(str: string): void;
-    /**
-     * #action
-     */
     setCursorMode(str: string): void;
-    /**
-     * #action
-     */
     setDrawCigar(flag: boolean): void;
-    /**
-     * #action
-     * returns to the import form
-     */
     clearView(): void;
-    /**
-     * #action
-     */
     setBorderX(n: number): void;
-    /**
-     * #action
-     */
     setBorderY(n: number): void;
-    /**
-     * #action
-     */
     setWidth(newWidth: number): number;
-    /**
-     * #action
-     */
     setHeight(newHeight: number): number;
-    /**
-     * #action
-     */
     setError(e: unknown): void;
-    /**
-     * #action
-     */
     zoomOut(): void;
-    /**
-     * #action
-     */
     zoomIn(): void;
-    /**
-     * #action
-     */
     activateTrackSelector(): import("@jbrowse/core/util").Widget;
-    /**
-     * #action
-     */
     showTrack(trackId: string, initialSnapshot?: {}): void;
-    /**
-     * #action
-     */
     hideTrack(trackId: string): number;
-    /**
-     * #action
-     */
     toggleTrack(trackId: string): boolean;
-    /**
-     * #action
-     */
     setAssemblyNames(target: string, query: string): void;
-    /**
-     * #action
-     */
     setViews(arr: SnapshotIn<Base1DViewModel>[]): void;
-    /**
-     * #action
-     */
     getCoords(mousedown: Coord, mouseup: Coord): {
         coord: number;
         index: number;
@@ -495,60 +404,29 @@ export default function stateModelFactory(pm: PluginManager): import("mobx-state
         end: number;
         reversed?: boolean;
     }[] | undefined;
-    /**
-     * #action
-     * zooms into clicked and dragged region
-     */
     zoomInToMouseCoords(mousedown: Coord, mouseup: Coord): void;
-    /**
-     * #action
-     */
     showAllRegions(): void;
-    /**
-     * #action
-     * creates a linear synteny view from the clicked and dragged region
-     */
     onDotplotView(mousedown: Coord, mouseup: Coord): void;
 } & {
-    /**
-     * #action
-     * creates an svg export and save using FileSaver
-     */
     exportSvg(opts?: ExportSvgOptions): Promise<void>;
     beforeDestroy(): void;
     afterAttach(): void;
-    /**
-     * #action
-     */
     squareView(): void;
-    /**
-     * #action
-     */
     squareViewProportional(): void;
 } & {
-    /**
-     * #method
-     */
     menuItems(): ({
         label: string;
-        onClick: () => void;
         icon: import("@mui/material/OverridableComponent").OverridableComponent<import("@mui/material").SvgIconTypeMap<{}, "svg">> & {
             muiName: string;
         };
-    } | {
-        label: string;
         onClick: () => void;
-        icon?: undefined;
     } | {
         label: string;
         onClick: () => import("@jbrowse/core/util").Widget;
         icon: typeof TrackSelectorIcon;
     })[];
-    /**
-     * #getter
-     */
     readonly error: unknown;
 }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>;
 export type DotplotViewStateModel = ReturnType<typeof stateModelFactory>;
 export type DotplotViewModel = Instance<DotplotViewStateModel>;
-export { type Dotplot1DViewModel, Dotplot1DView } from './1dview';
+export { Dotplot1DView, type Dotplot1DViewModel } from './1dview';