@jbrowse/plugin-dotplot-view 2.16.0 → 2.17.0

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Files changed (3) hide show
  1. package/dist/DotplotReadVsRef/DotplotReadVsRef.js +3 -2
  2. package/esm/DotplotReadVsRef/DotplotReadVsRef.js +3 -2
  3. package/package.json +2 -2
package/dist/DotplotReadVsRef/DotplotReadVsRef.js CHANGED
@@ -4,8 +4,9 @@ exports.onClick = onClick;
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  const configuration_1 = require("@jbrowse/core/configuration");
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  const util_1 = require("@jbrowse/core/util");
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  const plugin_alignments_1 = require("@jbrowse/plugin-alignments");
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- const { featurizeSA, getClip, getTag, getLength, getLengthSansClipping } = plugin_alignments_1.MismatchParser;
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+ const { featurizeSA, getClip, getLength, getLengthSansClipping } = plugin_alignments_1.MismatchParser;
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  function onClick(feature, self) {
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+ var _a;
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  const session = (0, util_1.getSession)(self);
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  try {
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  const cigar = feature.get('CIGAR');
@@ -19,7 +20,7 @@ function onClick(feature, self) {
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  const assemblyNames = [trackAssembly, readAssembly];
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  const trackId = `track-${Date.now()}`;
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  const trackName = `${readName}_vs_${trackAssembly}`;
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- const SA = getTag(feature, 'SA') || '';
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+ const SA = (_a = feature.get('tags')) === null || _a === void 0 ? void 0 : _a.SA;
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  const SA2 = featurizeSA(SA, feature.id(), strand, readName, true);
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  const feat = feature.toJSON();
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  feat.strand = 1;
package/esm/DotplotReadVsRef/DotplotReadVsRef.js CHANGED
@@ -1,8 +1,9 @@
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  import { getConf } from '@jbrowse/core/configuration';
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  import { getSession, gatherOverlaps } from '@jbrowse/core/util';
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  import { MismatchParser, } from '@jbrowse/plugin-alignments';
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- const { featurizeSA, getClip, getTag, getLength, getLengthSansClipping } = MismatchParser;
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+ const { featurizeSA, getClip, getLength, getLengthSansClipping } = MismatchParser;
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  export function onClick(feature, self) {
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+ var _a;
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  const session = getSession(self);
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  try {
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  const cigar = feature.get('CIGAR');
@@ -16,7 +17,7 @@ export function onClick(feature, self) {
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  const assemblyNames = [trackAssembly, readAssembly];
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  const trackId = `track-${Date.now()}`;
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  const trackName = `${readName}_vs_${trackAssembly}`;
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- const SA = getTag(feature, 'SA') || '';
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+ const SA = (_a = feature.get('tags')) === null || _a === void 0 ? void 0 : _a.SA;
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  const SA2 = featurizeSA(SA, feature.id(), strand, readName, true);
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  const feat = feature.toJSON();
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  feat.strand = 1;
package/package.json CHANGED
@@ -1,6 +1,6 @@
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  {
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  "name": "@jbrowse/plugin-dotplot-view",
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- "version": "2.16.0",
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+ "version": "2.17.0",
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  "description": "JBrowse 2 dotplot view",
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  "keywords": [
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  "jbrowse",
@@ -61,5 +61,5 @@
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  "publishConfig": {
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  "access": "public"
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  },
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- "gitHead": "1e6d4fbc27ce684eed19e3c217f34bd2da24ab75"
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+ "gitHead": "eed30b5e671f8f7823652d7cecc51aa89226de46"
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  }