@jbrowse/plugin-dotplot-view 2.13.1 → 2.15.0

package/esm/DotplotView/model.js

@@ -275,15 +275,6 @@ export default function stateModelFactory(pm) {
         setError(e) {
             self.volatileError = e;
         },
-        /**
-         * #action
-         * removes the view itself from the state tree entirely by calling the
-         * parent removeView
-         */
-        closeView() {
-            // eslint-disable-next-line @typescript-eslint/no-explicit-any
-            getParent(self, 2).removeView(self);
-        },
         /**
          * #action
          */
@@ -342,7 +333,9 @@ export default function stateModelFactory(pm) {
             const schema = pm.pluggableConfigSchemaType('track');
             const conf = resolveIdentifier(schema, getRoot(self), trackId);
             const t = self.tracks.filter(t => t.configuration === conf);
-            transaction(() => t.forEach(t => self.tracks.remove(t)));
+            transaction(() => {
+                t.forEach(t => self.tracks.remove(t));
+            });
             return t.length;
         },
         /**
@@ -589,15 +582,21 @@ export default function stateModelFactory(pm) {
                 },
                 {
                     label: 'Square view - same bp per pixel',
-                    onClick: () => self.squareView(),
+                    onClick: () => {
+                        self.squareView();
+                    },
                 },
                 {
                     label: 'Rectangular view - same total bp',
-                    onClick: () => self.squareView(),
+                    onClick: () => {
+                        self.squareView();
+                    },
                 },
                 {
                     label: 'Show all regions',
-                    onClick: () => self.showAllRegions(),
+                    onClick: () => {
+                        self.showAllRegions();
+                    },
                 },
                 {
                     label: 'Export SVG',

package/esm/DotplotView/svgcomponents/SVGDotplotView.js

@@ -12,7 +12,6 @@ export async function renderToSvg(model, opts) {
     var _a;
     await when(() => model.initialized);
     const { themeName = 'default', Wrapper = ({ children }) => children } = opts;
-    // eslint-disable-next-line @typescript-eslint/no-explicit-any
     const { createRootFn } = getRoot(model);
     const session = getSession(model);
     const theme = (_a = session.allThemes) === null || _a === void 0 ? void 0 : _a.call(session)[themeName];
@@ -35,7 +34,9 @@ export async function renderToSvg(model, opts) {
                     React.createElement("defs", null,
                         React.createElement("clipPath", { id: "clip-ruler" },
                             React.createElement("rect", { x: 0, y: 0, width: viewWidth, height: viewHeight }))),
-                    React.createElement("g", { clipPath: "url(#clip-ruler)" }, displayResults.map(({ result }, i) => (React.createElement("g", { key: i }, result))))),
+                    React.createElement("g", { clipPath: "url(#clip-ruler)" }, displayResults.map(({ result }, i) => (
+                    /* biome-ignore lint/suspicious/noArrayIndexKey: */
+                    React.createElement("g", { key: i }, result))))),
                 React.createElement("g", { transform: `translate(${borderX} ${viewHeight})` },
                     React.createElement(HorizontalAxisRaw, { model: model }))))), createRootFn);
 }

package/esm/LaunchDotplotView.js

@@ -15,7 +15,9 @@ export default function LaunchDotplotView(pluginManager) {
             });
             // http://localhost:3000/?config=test_data%2Fvolvox%2Fconfig.json&session=spec-{"views":[{"type":"DotplotView","views":[{"assembly":"volvox"},{"assembly":"volvox"}],"tracks":["volvox_fake_synteny"]}]}
             const idsNotFound = [];
-            tracks.forEach(track => tryTrack(model, track, idsNotFound));
+            tracks.forEach(track => {
+                tryTrack(model, track, idsNotFound);
+            });
             if (idsNotFound.length) {
                 throw new Error(`Could not resolve identifiers: ${idsNotFound.join(',')}`);
             }
@@ -31,7 +33,7 @@ function tryTrack(model, trackId, idsNotFound) {
         model.showTrack(trackId);
     }
     catch (e) {
-        if (`${e}`.match('Could not resolve identifier')) {
+        if (/Could not resolve identifier/.exec(`${e}`)) {
             idsNotFound.push(trackId);
         }
         else {

package/esm/ServerSideRenderedBlockContent.js

@@ -28,8 +28,12 @@ function LoadingMessage() {
     const [shown, setShown] = useState(false);
     const { classes } = useStyles();
     useEffect(() => {
-        const timeout = setTimeout(() => setShown(true), 300);
-        return () => clearTimeout(timeout);
+        const timeout = setTimeout(() => {
+            setShown(true);
+        }, 300);
+        return () => {
+            clearTimeout(timeout);
+        };
     }, []);
     return shown ? (React.createElement("div", { className: classes.loading },
         React.createElement(LoadingEllipses, null))) : null;
@@ -37,7 +41,7 @@ function LoadingMessage() {
 function BlockMessage({ messageText }) {
     const { classes } = useStyles();
     return (React.createElement("div", { className: classes.blockMessage },
-        React.createElement(Typography, null, `${messageText}`)));
+        React.createElement(Typography, null, messageText)));
 }
 function BlockError({ error }) {
     const { classes } = useStyles();

package/esm/ServerSideSyntenyRendering.d.ts

@@ -1,7 +1,7 @@
 import React from 'react';
 /**
- * A block whose content is rendered outside of the main thread and hydrated by this
- * component.
+ * A block whose content is rendered outside of the main thread and hydrated by
+ * this component.
  */
 interface ModelType {
     imageData: string;

package/esm/ServerSideSyntenyRendering.js

@@ -14,7 +14,7 @@ const ServerSideSyntenyRendering = observer(function ({ model, }) {
         const context = canvas.getContext('2d');
         drawImageOntoCanvasContext(imageData, context);
         setDone(true);
-    }, [height, imageData, width]);
+    }, [imageData]);
     return (React.createElement("canvas", { "data-testid": `prerendered_canvas${done ? '_done' : ''}`, ref: featureCanvas, width: width * highResolutionScaling, height: height * highResolutionScaling, style: { width, height, ...style } }));
 });
 export default ServerSideSyntenyRendering;

package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@jbrowse/plugin-dotplot-view",
-  "version": "2.13.1",
+  "version": "2.15.0",
   "description": "JBrowse 2 dotplot view",
   "keywords": [
     "jbrowse",
@@ -24,7 +24,7 @@
   ],
   "scripts": {
     "build": "npm-run-all build:*",
-    "test": "cd ../..; jest plugins/dotplot-view",
+    "test": "cd ../..; jest --passWithNoTests plugins/dotplot-view",
     "prepublishOnly": "yarn test",
     "prepack": "yarn build && yarn useDist",
     "postpack": "yarn useSrc",
@@ -37,7 +37,7 @@
   },
   "dependencies": {
     "@floating-ui/react": "^0.26.3",
-    "@mui/icons-material": "^5.0.1",
+    "@mui/icons-material": "^6.0.0",
     "@mui/x-data-grid": "^7.0.0",
     "@types/file-saver": "^2.0.1",
     "clone": "^2.1.2",
@@ -46,7 +46,7 @@
   "peerDependencies": {
     "@jbrowse/core": "^2.0.0",
     "@jbrowse/plugin-alignments": "^2.0.0",
-    "@mui/material": "^5.0.0",
+    "@mui/material": "^6.0.0",
     "mobx": "^6.0.0",
     "mobx-react": "^9.0.0",
     "mobx-state-tree": "^5.0.0",
@@ -61,5 +61,5 @@
   "publishConfig": {
     "access": "public"
   },
-  "gitHead": "fcebca71cc1d066654603e1a9accfa6c6d4f764d"
+  "gitHead": "87eeb1fbf8311dbf88d5e75b5a265f03beffdda8"
 }