@jbrowse/plugin-dotplot-view 2.12.0 → 2.12.1

package/dist/DotplotDisplay/index.js

@@ -3,7 +3,8 @@ var __importDefault = (this && this.__importDefault) || function (mod) {
     return (mod && mod.__esModule) ? mod : { "default": mod };
 };
 Object.defineProperty(exports, "__esModule", { value: true });
-exports.configSchemaFactory = void 0;
+exports.default = DotplotDisplayF;
+exports.configSchemaFactory = configSchemaFactory;
 /* eslint-disable @typescript-eslint/no-explicit-any */
 const configuration_1 = require("@jbrowse/core/configuration");
 const mobx_state_tree_1 = require("mobx-state-tree");
@@ -25,7 +26,6 @@ function DotplotDisplayF(pm) {
         });
     });
 }
-exports.default = DotplotDisplayF;
 /**
  * #config DotplotDisplay
  */
@@ -45,4 +45,3 @@ function configSchemaFactory(pm) {
         explicitlyTyped: true,
     });
 }
-exports.configSchemaFactory = configSchemaFactory;

package/dist/DotplotDisplay/renderDotplotBlock.js

@@ -3,7 +3,8 @@ var __importDefault = (this && this.__importDefault) || function (mod) {
     return (mod && mod.__esModule) ? mod : { "default": mod };
 };
 Object.defineProperty(exports, "__esModule", { value: true });
-exports.renderBlockEffect = exports.renderBlockData = void 0;
+exports.renderBlockData = renderBlockData;
+exports.renderBlockEffect = renderBlockEffect;
 const clone_1 = __importDefault(require("clone"));
 const configuration_1 = require("@jbrowse/core/configuration");
 const tracks_1 = require("@jbrowse/core/util/tracks");
@@ -40,7 +41,6 @@ function renderBlockData(self) {
     }
     return undefined;
 }
-exports.renderBlockData = renderBlockData;
 async function renderBlockEffect(props) {
     if (!props) {
         return;
@@ -53,4 +53,3 @@ async function renderBlockEffect(props) {
         renderingComponent: rendererType.ReactComponent,
     };
 }
-exports.renderBlockEffect = renderBlockEffect;

package/dist/DotplotDisplay/stateModelFactory.d.ts

@@ -33,9 +33,7 @@ export declare function stateModelFactory(configSchema: AnyConfigurationSchemaTy
         } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
             rendererTypeName: string;
             error: unknown;
-            message: string | undefined; /**
-             * #property
-             */
+            message: string | undefined;
         } & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
             id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
             type: import("mobx-state-tree").ISimpleType<string>;
@@ -45,14 +43,12 @@ export declare function stateModelFactory(configSchema: AnyConfigurationSchemaTy
             error: unknown;
             message: string | undefined;
         }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
-        onHorizontalScroll?: Function | undefined;
-        blockState?: Record<string, any> | undefined;
+        onHorizontalScroll?: Function;
+        blockState?: Record<string, any>;
     }>;
     readonly DisplayBlurb: React.FC<{
         model: {
-            id: string; /**
-             * #getter
-             */
+            id: string;
             type: string;
             rpcDriverName: string | undefined;
         } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
@@ -60,7 +56,9 @@ export declare function stateModelFactory(configSchema: AnyConfigurationSchemaTy
             error: unknown;
             message: string | undefined;
         } & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
-            id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
+            id: import("mobx-state-tree" /**
+             * #method
+             */).IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
             type: import("mobx-state-tree").ISimpleType<string>;
             rpcDriverName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
         }, {
@@ -73,12 +71,12 @@ export declare function stateModelFactory(configSchema: AnyConfigurationSchemaTy
     readonly parentTrack: any;
     renderProps(): any;
     readonly rendererType: import("@jbrowse/core/pluggableElementTypes").RendererType;
-    readonly DisplayMessageComponent: React.FC<any> | undefined;
+    readonly DisplayMessageComponent: undefined | React.FC<any>;
     trackMenuItems(): import("@jbrowse/core/ui").MenuItem[];
     readonly viewMenuActions: import("@jbrowse/core/ui").MenuItem[];
     regionCannotBeRendered(): null;
 } & {
-    setMessage(arg?: string | undefined): void;
+    setMessage(arg?: string): void;
     setError(error?: unknown): void;
     setRpcDriverName(rpcDriverName: string): void;
     reload(): void;
@@ -90,7 +88,7 @@ export declare function stateModelFactory(configSchema: AnyConfigurationSchemaTy
     renderInProgress: AbortController | undefined;
     filled: boolean;
     data: any;
-    reactElement: React.ReactElement<any, string | React.JSXElementConstructor<any>> | undefined;
+    reactElement: React.ReactElement | undefined;
     message: string | undefined;
     renderingComponent: any;
     ReactComponent2: React.FC<any>;

package/dist/DotplotDisplay/stateModelFactory.js

@@ -3,7 +3,7 @@ var __importDefault = (this && this.__importDefault) || function (mod) {
     return (mod && mod.__esModule) ? mod : { "default": mod };
 };
 Object.defineProperty(exports, "__esModule", { value: true });
-exports.stateModelFactory = void 0;
+exports.stateModelFactory = stateModelFactory;
 /* eslint-disable @typescript-eslint/no-explicit-any */
 const react_1 = __importDefault(require("react"));
 const mobx_state_tree_1 = require("mobx-state-tree");
@@ -161,4 +161,3 @@ function stateModelFactory(configSchema) {
         };
     });
 }
-exports.stateModelFactory = stateModelFactory;

package/dist/DotplotReadVsRef/DotplotReadVsRef.js

@@ -1,6 +1,6 @@
 "use strict";
 Object.defineProperty(exports, "__esModule", { value: true });
-exports.onClick = void 0;
+exports.onClick = onClick;
 const configuration_1 = require("@jbrowse/core/configuration");
 const util_1 = require("@jbrowse/core/util");
 const plugin_alignments_1 = require("@jbrowse/plugin-alignments");
@@ -98,4 +98,3 @@ function onClick(feature, self) {
         session.notifyError(`${e}`, e);
     }
 }
-exports.onClick = onClick;

package/dist/DotplotReadVsRef/index.js

@@ -3,6 +3,7 @@ var __importDefault = (this && this.__importDefault) || function (mod) {
     return (mod && mod.__esModule) ? mod : { "default": mod };
 };
 Object.defineProperty(exports, "__esModule", { value: true });
+exports.default = DotplotReadVsRefMenuItem;
 // icons
 const Add_1 = __importDefault(require("@mui/icons-material/Add"));
 // local
@@ -38,4 +39,3 @@ function DotplotReadVsRefMenuItem(pluginManager) {
         return pluggableElement;
     });
 }
-exports.default = DotplotReadVsRefMenuItem;

package/dist/DotplotRenderer/DotplotRenderer.d.ts

@@ -1,4 +1,3 @@
-/// <reference types="react" />
 import { AnyConfigurationModel } from '@jbrowse/core/configuration';
 import { Region } from '@jbrowse/core/util';
 import ComparativeRenderer, { RenderArgsDeserialized, RenderArgs } from '@jbrowse/core/pluggableElementTypes/renderers/ComparativeServerSideRendererType';
@@ -43,8 +42,8 @@ export default class DotplotRenderer extends ComparativeRenderer {
         bpPerPxX: number;
         bpPerPxY: number;
         canvasRecordedData: any;
-        reactElement?: import("react").ReactElement<any, string | import("react").JSXElementConstructor<any>> | undefined;
-        html?: string | undefined;
+        reactElement?: import("react").ReactElement;
+        html?: string;
     } | {
         height: number;
         width: number;
@@ -53,7 +52,7 @@ export default class DotplotRenderer extends ComparativeRenderer {
         bpPerPxX: number;
         bpPerPxY: number;
         reactElement: import("react").JSX.Element;
-        html?: string | undefined;
+        html?: string;
     } | {
         height: number;
         width: number;
@@ -62,8 +61,8 @@ export default class DotplotRenderer extends ComparativeRenderer {
         bpPerPxX: number;
         bpPerPxY: number;
         imageData: any;
-        reactElement?: import("react").ReactElement<any, string | import("react").JSXElementConstructor<any>> | undefined;
-        html?: string | undefined;
+        reactElement?: import("react").ReactElement;
+        html?: string;
     }>;
 }
 export {};

package/dist/DotplotRenderer/index.js

@@ -3,6 +3,7 @@ var __importDefault = (this && this.__importDefault) || function (mod) {
     return (mod && mod.__esModule) ? mod : { "default": mod };
 };
 Object.defineProperty(exports, "__esModule", { value: true });
+exports.default = DotplotRendererF;
 const DotplotRendering_1 = __importDefault(require("./components/DotplotRendering"));
 const DotplotRenderer_1 = __importDefault(require("./DotplotRenderer"));
 const configSchema_1 = __importDefault(require("./configSchema"));
@@ -14,4 +15,3 @@ function DotplotRendererF(pluginManager) {
         pluginManager,
     }));
 }
-exports.default = DotplotRendererF;

package/dist/DotplotView/1dview.d.ts

@@ -7,9 +7,7 @@ declare const Dotplot1DView: import("mobx-state-tree").IModelType<{
     interRegionPaddingWidth: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<number>, [undefined]>;
     minimumBlockWidth: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<number>, [undefined]>;
 }, {
-    features: import("@jbrowse/core/util").Feature[] | undefined; /**
-     * #getter
-     */
+    features: undefined | import("@jbrowse/core/util").Feature[];
     volatileWidth: number;
 } & {
     setDisplayedRegions(regions: import("@jbrowse/core/util").Region[]): void;
@@ -36,24 +34,24 @@ declare const Dotplot1DView: import("mobx-state-tree").IModelType<{
         offset: number;
         start: number;
         end: number;
-        reversed?: boolean | undefined;
+        reversed?: boolean;
     };
     bpToPx({ refName, coord, regionNumber, }: {
         refName: string;
         coord: number;
-        regionNumber?: number | undefined;
+        regionNumber?: number;
     }): number | undefined;
 } & {
     setFeatures(features: import("@jbrowse/core/util").Feature[]): void;
     showAllRegions(): void;
     zoomOut(): void;
     zoomIn(): void;
-    zoomTo(bpPerPx: number, offset?: number | undefined): number;
+    zoomTo(bpPerPx: number, offset?: number): number;
     scrollTo(offsetPx: number): number;
     centerAt(coord: number, refName: string | undefined, regionNumber: number): void;
     scroll(distance: number): number;
 } & {
-    moveTo(start?: import("@jbrowse/core/util/Base1DUtils").BpOffset | undefined, end?: import("@jbrowse/core/util/Base1DUtils").BpOffset | undefined): void;
+    moveTo(start?: import("@jbrowse/core/util/Base1DUtils").BpOffset, end?: import("@jbrowse/core/util/Base1DUtils").BpOffset): void;
 } & {
     /**
      * #action
@@ -98,9 +96,7 @@ declare const DotplotHView: import("mobx-state-tree").IModelType<{
     interRegionPaddingWidth: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<number>, [undefined]>;
     minimumBlockWidth: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<number>, [undefined]>;
 }, {
-    features: import("@jbrowse/core/util").Feature[] | undefined; /**
-     * #getter
-     */
+    features: undefined | import("@jbrowse/core/util").Feature[];
     volatileWidth: number;
 } & {
     setDisplayedRegions(regions: import("@jbrowse/core/util").Region[]): void;
@@ -127,24 +123,24 @@ declare const DotplotHView: import("mobx-state-tree").IModelType<{
         offset: number;
         start: number;
         end: number;
-        reversed?: boolean | undefined;
+        reversed?: boolean;
     };
     bpToPx({ refName, coord, regionNumber, }: {
         refName: string;
         coord: number;
-        regionNumber?: number | undefined;
+        regionNumber?: number;
     }): number | undefined;
 } & {
     setFeatures(features: import("@jbrowse/core/util").Feature[]): void;
     showAllRegions(): void;
     zoomOut(): void;
     zoomIn(): void;
-    zoomTo(bpPerPx: number, offset?: number | undefined): number;
+    zoomTo(bpPerPx: number, offset?: number): number;
     scrollTo(offsetPx: number): number;
     centerAt(coord: number, refName: string | undefined, regionNumber: number): void;
     scroll(distance: number): number;
 } & {
-    moveTo(start?: import("@jbrowse/core/util/Base1DUtils").BpOffset | undefined, end?: import("@jbrowse/core/util/Base1DUtils").BpOffset | undefined): void;
+    moveTo(start?: import("@jbrowse/core/util/Base1DUtils").BpOffset, end?: import("@jbrowse/core/util/Base1DUtils").BpOffset): void;
 } & {
     /**
      * #action
@@ -191,9 +187,7 @@ declare const DotplotVView: import("mobx-state-tree").IModelType<{
     interRegionPaddingWidth: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<number>, [undefined]>;
     minimumBlockWidth: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<number>, [undefined]>;
 }, {
-    features: import("@jbrowse/core/util").Feature[] | undefined; /**
-     * #getter
-     */
+    features: undefined | import("@jbrowse/core/util").Feature[];
     volatileWidth: number;
 } & {
     setDisplayedRegions(regions: import("@jbrowse/core/util").Region[]): void;
@@ -220,24 +214,24 @@ declare const DotplotVView: import("mobx-state-tree").IModelType<{
         offset: number;
         start: number;
         end: number;
-        reversed?: boolean | undefined;
+        reversed?: boolean;
     };
     bpToPx({ refName, coord, regionNumber, }: {
         refName: string;
         coord: number;
-        regionNumber?: number | undefined;
+        regionNumber?: number;
     }): number | undefined;
 } & {
     setFeatures(features: import("@jbrowse/core/util").Feature[]): void;
     showAllRegions(): void;
     zoomOut(): void;
     zoomIn(): void;
-    zoomTo(bpPerPx: number, offset?: number | undefined): number;
+    zoomTo(bpPerPx: number, offset?: number): number;
     scrollTo(offsetPx: number): number;
     centerAt(coord: number, refName: string | undefined, regionNumber: number): void;
     scroll(distance: number): number;
 } & {
-    moveTo(start?: import("@jbrowse/core/util/Base1DUtils").BpOffset | undefined, end?: import("@jbrowse/core/util/Base1DUtils").BpOffset | undefined): void;
+    moveTo(start?: import("@jbrowse/core/util/Base1DUtils").BpOffset, end?: import("@jbrowse/core/util/Base1DUtils").BpOffset): void;
 } & {
     /**
      * #action

package/dist/DotplotView/components/CursorIcon.js

@@ -3,16 +3,15 @@ var __importDefault = (this && this.__importDefault) || function (mod) {
     return (mod && mod.__esModule) ? mod : { "default": mod };
 };
 Object.defineProperty(exports, "__esModule", { value: true });
-exports.CursorMouse = exports.CursorMove = void 0;
+exports.CursorMove = CursorMove;
+exports.CursorMouse = CursorMouse;
 const SvgIcon_1 = __importDefault(require("@mui/material/SvgIcon"));
 const react_1 = __importDefault(require("react"));
 function CursorMove(props) {
     return (react_1.default.createElement(SvgIcon_1.default, { ...props },
         react_1.default.createElement("path", { fill: "currentColor", d: "M13,6V11H18V7.75L22.25,12L18,16.25V13H13V18H16.25L12,22.25L7.75,18H11V13H6V16.25L1.75,12L6,7.75V11H11V6H7.75L12,1.75L16.25,6H13Z" })));
 }
-exports.CursorMove = CursorMove;
 function CursorMouse(props) {
     return (react_1.default.createElement(SvgIcon_1.default, { ...props },
         react_1.default.createElement("path", { fill: "currentColor", d: "M10.07,14.27C10.57,14.03 11.16,14.25 11.4,14.75L13.7,19.74L15.5,18.89L13.19,13.91C12.95,13.41 13.17,12.81 13.67,12.58L13.95,12.5L16.25,12.05L8,5.12V15.9L9.82,14.43L10.07,14.27M13.64,21.97C13.14,22.21 12.54,22 12.31,21.5L10.13,16.76L7.62,18.78C7.45,18.92 7.24,19 7,19A1,1 0 0,1 6,18V3A1,1 0 0,1 7,2C7.24,2 7.47,2.09 7.64,2.23L7.65,2.22L19.14,11.86C19.57,12.22 19.62,12.85 19.27,13.27C19.12,13.45 18.91,13.57 18.7,13.61L15.54,14.23L17.74,18.96C18,19.46 17.76,20.05 17.26,20.28L13.64,21.97Z" })));
 }
-exports.CursorMouse = CursorMouse;

package/dist/DotplotView/components/ExportSvgDialog.js

@@ -23,6 +23,7 @@ var __importStar = (this && this.__importStar) || function (mod) {
     return result;
 };
 Object.defineProperty(exports, "__esModule", { value: true });
+exports.default = ExportSvgDialog;
 const react_1 = __importStar(require("react"));
 const material_1 = require("@mui/material");
 const ui_1 = require("@jbrowse/core/ui");
@@ -77,4 +78,3 @@ function ExportSvgDialog({ model, handleClose, }) {
                     }
                 } }, "Submit"))));
 }
-exports.default = ExportSvgDialog;

package/dist/DotplotView/components/Grid.js

@@ -4,6 +4,7 @@ var __importDefault = (this && this.__importDefault) || function (mod) {
 };
 Object.defineProperty(exports, "__esModule", { value: true });
 exports.GridRaw = void 0;
+exports.default = Grid;
 const react_1 = __importDefault(require("react"));
 const mobx_react_1 = require("mobx-react");
 const material_1 = require("@mui/material");
@@ -57,4 +58,3 @@ function Grid({ model, children, }) {
     return (react_1.default.createElement("svg", { width: viewWidth, height: viewHeight, style: { background: 'rgba(0,0,0,0.12)' } },
         react_1.default.createElement(exports.GridRaw, { model: model }, children)));
 }
-exports.default = Grid;

package/dist/DotplotView/components/ImportForm/util.js

@@ -1,6 +1,9 @@
 "use strict";
 Object.defineProperty(exports, "__esModule", { value: true });
-exports.extName = exports.basename = exports.stripGz = exports.getName = void 0;
+exports.getName = getName;
+exports.stripGz = stripGz;
+exports.basename = basename;
+exports.extName = extName;
 function getName(sessionTrackData) {
     return sessionTrackData
         ? // @ts-expect-error
@@ -11,17 +14,13 @@ function getName(sessionTrackData) {
                 sessionTrackData.name
         : undefined;
 }
-exports.getName = getName;
 function stripGz(fileName) {
     return fileName.endsWith('.gz') ? fileName.slice(0, -3) : fileName;
 }
-exports.stripGz = stripGz;
 function basename(str) {
     return str.split('#')[0].split('?')[0].split('/').pop();
 }
-exports.basename = basename;
 function extName(str) {
     const r = str.split('.').pop();
     return r ? `.${r}` : '';
 }
-exports.extName = extName;

package/dist/DotplotView/components/util.js

@@ -1,6 +1,9 @@
 "use strict";
 Object.defineProperty(exports, "__esModule", { value: true });
-exports.makeTicks = exports.chooseGridPitch = exports.getBlockLabelKeysToHide = exports.locstr = void 0;
+exports.locstr = locstr;
+exports.getBlockLabelKeysToHide = getBlockLabelKeysToHide;
+exports.chooseGridPitch = chooseGridPitch;
+exports.makeTicks = makeTicks;
 function locstr(px, view, includeAsm = true) {
     const { assemblyName, refName, start, offset, oob } = view.pxToBp(px);
     const coord = Math.floor(start + offset);
@@ -8,7 +11,6 @@ function locstr(px, view, includeAsm = true) {
         ? 'out of bounds'
         : `${includeAsm ? '{' + assemblyName + '}' : ''}${refName}:${coord.toLocaleString('en-US')}`;
 }
-exports.locstr = locstr;
 function getBlockLabelKeysToHide(blocks, length, viewOffsetPx) {
     const blockLabelKeysToHide = new Set();
     const sortedBlocks = [...blocks].sort((a, b) => {
@@ -29,7 +31,6 @@ function getBlockLabelKeysToHide(blocks, length, viewOffsetPx) {
     }
     return blockLabelKeysToHide;
 }
-exports.getBlockLabelKeysToHide = getBlockLabelKeysToHide;
 /**
  * Given a scale ( bp/px ) and minimum distances (px) between major and minor
  * gridlines, return an object like `{ majorPitch: bp, minorPitch: bp }` giving
@@ -61,7 +62,6 @@ function chooseGridPitch(scale, minMajorPitchPx, minMinorPitchPx) {
     }
     return { majorPitch, minorPitch };
 }
-exports.chooseGridPitch = chooseGridPitch;
 function makeTicks(regions, bpPerPx, emitMajor = true, emitMinor = true) {
     const ticks = [];
     const gridPitch = chooseGridPitch(bpPerPx, 60, 15);
@@ -83,4 +83,3 @@ function makeTicks(regions, bpPerPx, emitMajor = true, emitMinor = true) {
     }
     return ticks;
 }
-exports.makeTicks = makeTicks;

package/dist/DotplotView/index.js

@@ -26,6 +26,7 @@ var __importDefault = (this && this.__importDefault) || function (mod) {
     return (mod && mod.__esModule) ? mod : { "default": mod };
 };
 Object.defineProperty(exports, "__esModule", { value: true });
+exports.default = DotplotViewF;
 const react_1 = require("react");
 const ViewType_1 = __importDefault(require("@jbrowse/core/pluggableElementTypes/ViewType"));
 // locals
@@ -40,4 +41,3 @@ function DotplotViewF(pluginManager) {
         });
     });
 }
-exports.default = DotplotViewF;

package/dist/DotplotView/model.d.ts

@@ -42,7 +42,7 @@ export default function stateModelFactory(pm: PluginManager): import("mobx-state
         interRegionPaddingWidth: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<number>, [undefined]>;
         minimumBlockWidth: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<number>, [undefined]>;
     }, {
-        features: import("@jbrowse/core/util").Feature[] | undefined;
+        features: undefined | import("@jbrowse/core/util").Feature[];
         volatileWidth: number;
     } & {
         setDisplayedRegions(regions: import("@jbrowse/core/util").Region[]): void;
@@ -69,28 +69,24 @@ export default function stateModelFactory(pm: PluginManager): import("mobx-state
             offset: number;
             start: number;
             end: number;
-            reversed?: boolean | undefined;
+            reversed?: boolean;
         };
         bpToPx({ refName, coord, regionNumber, }: {
             refName: string;
             coord: number;
-            regionNumber?: number | undefined;
+            regionNumber?: number;
         }): number | undefined;
     } & {
-        setFeatures(features: import("@jbrowse/core/util").Feature[]): void; /**
-         * #property
-         */
+        setFeatures(features: import("@jbrowse/core/util").Feature[]): void;
         showAllRegions(): void;
         zoomOut(): void;
-        zoomIn(): void; /**
-         * #property
-         */
-        zoomTo(bpPerPx: number, offset?: number | undefined): number;
+        zoomIn(): void;
+        zoomTo(bpPerPx: number, offset?: number): number;
         scrollTo(offsetPx: number): number;
         centerAt(coord: number, refName: string | undefined, regionNumber: number): void;
         scroll(distance: number): number;
     } & {
-        moveTo(start?: import("@jbrowse/core/util/Base1DUtils").BpOffset | undefined, end?: import("@jbrowse/core/util/Base1DUtils").BpOffset | undefined): void;
+        moveTo(start?: import("@jbrowse/core/util/Base1DUtils").BpOffset, end?: import("@jbrowse/core/util/Base1DUtils").BpOffset): void;
     } & {
         setScaleFactor(n: number): void;
         center(): void;
@@ -112,7 +108,7 @@ export default function stateModelFactory(pm: PluginManager): import("mobx-state
         interRegionPaddingWidth: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<number>, [undefined]>;
         minimumBlockWidth: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<number>, [undefined]>;
     }, {
-        features: import("@jbrowse/core/util").Feature[] | undefined;
+        features: undefined | import("@jbrowse/core/util").Feature[];
         volatileWidth: number;
     } & {
         setDisplayedRegions(regions: import("@jbrowse/core/util").Region[]): void;
@@ -139,28 +135,24 @@ export default function stateModelFactory(pm: PluginManager): import("mobx-state
             offset: number;
             start: number;
             end: number;
-            reversed?: boolean | undefined;
+            reversed?: boolean;
         };
         bpToPx({ refName, coord, regionNumber, }: {
             refName: string;
             coord: number;
-            regionNumber?: number | undefined;
+            regionNumber?: number;
         }): number | undefined;
     } & {
-        setFeatures(features: import("@jbrowse/core/util").Feature[]): void; /**
-         * #property
-         */
+        setFeatures(features: import("@jbrowse/core/util").Feature[]): void;
         showAllRegions(): void;
         zoomOut(): void;
-        zoomIn(): void; /**
-         * #property
-         */
-        zoomTo(bpPerPx: number, offset?: number | undefined): number;
+        zoomIn(): void;
+        zoomTo(bpPerPx: number, offset?: number): number;
         scrollTo(offsetPx: number): number;
         centerAt(coord: number, refName: string | undefined, regionNumber: number): void;
         scroll(distance: number): number;
     } & {
-        moveTo(start?: import("@jbrowse/core/util/Base1DUtils").BpOffset | undefined, end?: import("@jbrowse/core/util/Base1DUtils").BpOffset | undefined): void;
+        moveTo(start?: import("@jbrowse/core/util/Base1DUtils").BpOffset, end?: import("@jbrowse/core/util/Base1DUtils").BpOffset): void;
     } & {
         setScaleFactor(n: number): void;
         center(): void;
@@ -189,13 +181,15 @@ export default function stateModelFactory(pm: PluginManager): import("mobx-state
         readonly canConfigure: boolean | ({
             [x: string]: any;
         } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
-            setSubschema(slotName: string, data: unknown): any;
+            setSubschema(slotName: string, data: Record<string, unknown>): Record<string, unknown> | ({
+                [x: string]: any;
+            } & import("mobx-state-tree/dist/internal").NonEmptyObject & any & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>);
         } & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>) | undefined;
     } & {
         setMinimized(flag: boolean): void;
-        showDisplay(displayId: string, initialSnapshot?: {} | undefined): void;
+        showDisplay(displayId: string, initialSnapshot?: {}): void;
         hideDisplay(displayId: string): number;
-        replaceDisplay(oldId: string, newId: string, initialSnapshot?: {} | undefined): void;
+        replaceDisplay(oldId: string, newId: string, initialSnapshot?: {}): void;
     } & {
         trackMenuItems(): (import("@jbrowse/core/ui").MenuDivider | import("@jbrowse/core/ui").MenuSubHeader | import("@jbrowse/core/ui").NormalMenuItem | import("@jbrowse/core/ui").CheckboxMenuItem | import("@jbrowse/core/ui").RadioMenuItem | import("@jbrowse/core/ui").SubMenuItem | {
             type: string;
@@ -285,7 +279,7 @@ export default function stateModelFactory(pm: PluginManager): import("mobx-state
         interRegionPaddingWidth: number;
         minimumBlockWidth: number;
     } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
-        features: import("@jbrowse/core/util").Feature[] | undefined;
+        features: undefined | import("@jbrowse/core/util").Feature[];
         volatileWidth: number;
     } & {
         setDisplayedRegions(regions: import("@jbrowse/core/util").Region[]): void;
@@ -312,28 +306,24 @@ export default function stateModelFactory(pm: PluginManager): import("mobx-state
             offset: number;
             start: number;
             end: number;
-            reversed?: boolean | undefined;
+            reversed?: boolean;
         };
         bpToPx({ refName, coord, regionNumber, }: {
             refName: string;
             coord: number;
-            regionNumber?: number | undefined;
+            regionNumber?: number;
         }): number | undefined;
     } & {
-        setFeatures(features: import("@jbrowse/core/util").Feature[]): void; /**
-         * #property
-         */
+        setFeatures(features: import("@jbrowse/core/util").Feature[]): void;
         showAllRegions(): void;
         zoomOut(): void;
-        zoomIn(): void; /**
-         * #property
-         */
-        zoomTo(bpPerPx: number, offset?: number | undefined): number;
+        zoomIn(): void;
+        zoomTo(bpPerPx: number, offset?: number): number;
         scrollTo(offsetPx: number): number;
         centerAt(coord: number, refName: string | undefined, regionNumber: number): void;
         scroll(distance: number): number;
     } & {
-        moveTo(start?: import("@jbrowse/core/util/Base1DUtils").BpOffset | undefined, end?: import("@jbrowse/core/util/Base1DUtils").BpOffset | undefined): void;
+        moveTo(start?: import("@jbrowse/core/util/Base1DUtils").BpOffset, end?: import("@jbrowse/core/util/Base1DUtils").BpOffset): void;
     } & {
         setScaleFactor(n: number): void;
         center(): void;
@@ -354,7 +344,7 @@ export default function stateModelFactory(pm: PluginManager): import("mobx-state
         interRegionPaddingWidth: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<number>, [undefined]>;
         minimumBlockWidth: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<number>, [undefined]>;
     }, {
-        features: import("@jbrowse/core/util").Feature[] | undefined;
+        features: undefined | import("@jbrowse/core/util").Feature[];
         volatileWidth: number;
     } & {
         setDisplayedRegions(regions: import("@jbrowse/core/util").Region[]): void;
@@ -381,28 +371,24 @@ export default function stateModelFactory(pm: PluginManager): import("mobx-state
             offset: number;
             start: number;
             end: number;
-            reversed?: boolean | undefined;
+            reversed?: boolean;
         };
         bpToPx({ refName, coord, regionNumber, }: {
             refName: string;
             coord: number;
-            regionNumber?: number | undefined;
+            regionNumber?: number;
         }): number | undefined;
     } & {
-        setFeatures(features: import("@jbrowse/core/util").Feature[]): void; /**
-         * #property
-         */
+        setFeatures(features: import("@jbrowse/core/util").Feature[]): void;
         showAllRegions(): void;
         zoomOut(): void;
-        zoomIn(): void; /**
-         * #property
-         */
-        zoomTo(bpPerPx: number, offset?: number | undefined): number;
+        zoomIn(): void;
+        zoomTo(bpPerPx: number, offset?: number): number;
         scrollTo(offsetPx: number): number;
         centerAt(coord: number, refName: string | undefined, regionNumber: number): void;
         scroll(distance: number): number;
     } & {
-        moveTo(start?: import("@jbrowse/core/util/Base1DUtils").BpOffset | undefined, end?: import("@jbrowse/core/util/Base1DUtils").BpOffset | undefined): void;
+        moveTo(start?: import("@jbrowse/core/util/Base1DUtils").BpOffset, end?: import("@jbrowse/core/util/Base1DUtils").BpOffset): void;
     } & {
         setScaleFactor(n: number): void;
         center(): void;
@@ -512,7 +498,7 @@ export default function stateModelFactory(pm: PluginManager): import("mobx-state
         offset: number;
         start: number;
         end: number;
-        reversed?: boolean | undefined;
+        reversed?: boolean;
     }[] | undefined;
     /**
      * #action

package/dist/DotplotView/model.js

@@ -27,6 +27,7 @@ var __importDefault = (this && this.__importDefault) || function (mod) {
 };
 Object.defineProperty(exports, "__esModule", { value: true });
 exports.Dotplot1DView = void 0;
+exports.default = stateModelFactory;
 const react_1 = require("react");
 const mobx_state_tree_1 = require("mobx-state-tree");
 const file_saver_1 = require("file-saver");
@@ -657,6 +658,5 @@ function stateModelFactory(pm) {
         },
     }));
 }
-exports.default = stateModelFactory;
 var _1dview_2 = require("./1dview");
 Object.defineProperty(exports, "Dotplot1DView", { enumerable: true, get: function () { return _1dview_2.Dotplot1DView; } });

package/dist/DotplotView/svgcomponents/SVGBackground.js

@@ -3,6 +3,7 @@ var __importDefault = (this && this.__importDefault) || function (mod) {
     return (mod && mod.__esModule) ? mod : { "default": mod };
 };
 Object.defineProperty(exports, "__esModule", { value: true });
+exports.default = SVGBackground;
 const react_1 = __importDefault(require("react"));
 const material_1 = require("@mui/material");
 const util_1 = require("@jbrowse/core/util");
@@ -10,4 +11,3 @@ function SVGBackground({ width, height, }) {
     const theme = (0, material_1.useTheme)();
     return (react_1.default.createElement("rect", { x: 0, y: 0, width: width, height: height, fill: (0, util_1.stripAlpha)(theme.palette.background.default) }));
 }
-exports.default = SVGBackground;

package/dist/DotplotView/svgcomponents/SVGDotplotView.js

@@ -3,7 +3,7 @@ var __importDefault = (this && this.__importDefault) || function (mod) {
     return (mod && mod.__esModule) ? mod : { "default": mod };
 };
 Object.defineProperty(exports, "__esModule", { value: true });
-exports.renderToSvg = void 0;
+exports.renderToSvg = renderToSvg;
 const react_1 = __importDefault(require("react"));
 const mobx_1 = require("mobx");
 const util_1 = require("@jbrowse/core/util");
@@ -45,4 +45,3 @@ async function renderToSvg(model, opts) {
                 react_1.default.createElement("g", { transform: `translate(${borderX} ${viewHeight})` },
                     react_1.default.createElement(Axes_1.HorizontalAxisRaw, { model: model }))))), createRootFn);
 }
-exports.renderToSvg = renderToSvg;

package/dist/LaunchDotplotView.js

@@ -1,5 +1,6 @@
 "use strict";
 Object.defineProperty(exports, "__esModule", { value: true });
+exports.default = LaunchDotplotView;
 const mobx_1 = require("mobx");
 function LaunchDotplotView(pluginManager) {
     pluginManager.addToExtensionPoint('LaunchView-DotplotView', 
@@ -28,7 +29,6 @@ function LaunchDotplotView(pluginManager) {
         }
     });
 }
-exports.default = LaunchDotplotView;
 function tryTrack(model, trackId, idsNotFound) {
     try {
         model.showTrack(trackId);

package/dist/util.js

@@ -1,8 +1,7 @@
 "use strict";
 Object.defineProperty(exports, "__esModule", { value: true });
-exports.getTag = void 0;
+exports.getTag = getTag;
 function getTag(f, tag) {
     const tags = f.get('tags');
     return tags ? tags[tag] : f.get(tag);
 }
-exports.getTag = getTag;

package/esm/DotplotDisplay/stateModelFactory.d.ts

@@ -33,9 +33,7 @@ export declare function stateModelFactory(configSchema: AnyConfigurationSchemaTy
         } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
             rendererTypeName: string;
             error: unknown;
-            message: string | undefined; /**
-             * #property
-             */
+            message: string | undefined;
         } & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
             id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
             type: import("mobx-state-tree").ISimpleType<string>;
@@ -45,14 +43,12 @@ export declare function stateModelFactory(configSchema: AnyConfigurationSchemaTy
             error: unknown;
             message: string | undefined;
         }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
-        onHorizontalScroll?: Function | undefined;
-        blockState?: Record<string, any> | undefined;
+        onHorizontalScroll?: Function;
+        blockState?: Record<string, any>;
     }>;
     readonly DisplayBlurb: React.FC<{
         model: {
-            id: string; /**
-             * #getter
-             */
+            id: string;
             type: string;
             rpcDriverName: string | undefined;
         } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
@@ -60,7 +56,9 @@ export declare function stateModelFactory(configSchema: AnyConfigurationSchemaTy
             error: unknown;
             message: string | undefined;
         } & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
-            id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
+            id: import("mobx-state-tree" /**
+             * #method
+             */).IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
             type: import("mobx-state-tree").ISimpleType<string>;
             rpcDriverName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
         }, {
@@ -73,12 +71,12 @@ export declare function stateModelFactory(configSchema: AnyConfigurationSchemaTy
     readonly parentTrack: any;
     renderProps(): any;
     readonly rendererType: import("@jbrowse/core/pluggableElementTypes").RendererType;
-    readonly DisplayMessageComponent: React.FC<any> | undefined;
+    readonly DisplayMessageComponent: undefined | React.FC<any>;
     trackMenuItems(): import("@jbrowse/core/ui").MenuItem[];
     readonly viewMenuActions: import("@jbrowse/core/ui").MenuItem[];
     regionCannotBeRendered(): null;
 } & {
-    setMessage(arg?: string | undefined): void;
+    setMessage(arg?: string): void;
     setError(error?: unknown): void;
     setRpcDriverName(rpcDriverName: string): void;
     reload(): void;
@@ -90,7 +88,7 @@ export declare function stateModelFactory(configSchema: AnyConfigurationSchemaTy
     renderInProgress: AbortController | undefined;
     filled: boolean;
     data: any;
-    reactElement: React.ReactElement<any, string | React.JSXElementConstructor<any>> | undefined;
+    reactElement: React.ReactElement | undefined;
     message: string | undefined;
     renderingComponent: any;
     ReactComponent2: React.FC<any>;

package/esm/DotplotRenderer/DotplotRenderer.d.ts

@@ -1,4 +1,3 @@
-/// <reference types="react" />
 import { AnyConfigurationModel } from '@jbrowse/core/configuration';
 import { Region } from '@jbrowse/core/util';
 import ComparativeRenderer, { RenderArgsDeserialized, RenderArgs } from '@jbrowse/core/pluggableElementTypes/renderers/ComparativeServerSideRendererType';
@@ -43,8 +42,8 @@ export default class DotplotRenderer extends ComparativeRenderer {
         bpPerPxX: number;
         bpPerPxY: number;
         canvasRecordedData: any;
-        reactElement?: import("react").ReactElement<any, string | import("react").JSXElementConstructor<any>> | undefined;
-        html?: string | undefined;
+        reactElement?: import("react").ReactElement;
+        html?: string;
     } | {
         height: number;
         width: number;
@@ -53,7 +52,7 @@ export default class DotplotRenderer extends ComparativeRenderer {
         bpPerPxX: number;
         bpPerPxY: number;
         reactElement: import("react").JSX.Element;
-        html?: string | undefined;
+        html?: string;
     } | {
         height: number;
         width: number;
@@ -62,8 +61,8 @@ export default class DotplotRenderer extends ComparativeRenderer {
         bpPerPxX: number;
         bpPerPxY: number;
         imageData: any;
-        reactElement?: import("react").ReactElement<any, string | import("react").JSXElementConstructor<any>> | undefined;
-        html?: string | undefined;
+        reactElement?: import("react").ReactElement;
+        html?: string;
     }>;
 }
 export {};

package/esm/DotplotView/1dview.d.ts

@@ -7,9 +7,7 @@ declare const Dotplot1DView: import("mobx-state-tree").IModelType<{
     interRegionPaddingWidth: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<number>, [undefined]>;
     minimumBlockWidth: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<number>, [undefined]>;
 }, {
-    features: import("@jbrowse/core/util").Feature[] | undefined; /**
-     * #getter
-     */
+    features: undefined | import("@jbrowse/core/util").Feature[];
     volatileWidth: number;
 } & {
     setDisplayedRegions(regions: import("@jbrowse/core/util").Region[]): void;
@@ -36,24 +34,24 @@ declare const Dotplot1DView: import("mobx-state-tree").IModelType<{
         offset: number;
         start: number;
         end: number;
-        reversed?: boolean | undefined;
+        reversed?: boolean;
     };
     bpToPx({ refName, coord, regionNumber, }: {
         refName: string;
         coord: number;
-        regionNumber?: number | undefined;
+        regionNumber?: number;
     }): number | undefined;
 } & {
     setFeatures(features: import("@jbrowse/core/util").Feature[]): void;
     showAllRegions(): void;
     zoomOut(): void;
     zoomIn(): void;
-    zoomTo(bpPerPx: number, offset?: number | undefined): number;
+    zoomTo(bpPerPx: number, offset?: number): number;
     scrollTo(offsetPx: number): number;
     centerAt(coord: number, refName: string | undefined, regionNumber: number): void;
     scroll(distance: number): number;
 } & {
-    moveTo(start?: import("@jbrowse/core/util/Base1DUtils").BpOffset | undefined, end?: import("@jbrowse/core/util/Base1DUtils").BpOffset | undefined): void;
+    moveTo(start?: import("@jbrowse/core/util/Base1DUtils").BpOffset, end?: import("@jbrowse/core/util/Base1DUtils").BpOffset): void;
 } & {
     /**
      * #action
@@ -98,9 +96,7 @@ declare const DotplotHView: import("mobx-state-tree").IModelType<{
     interRegionPaddingWidth: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<number>, [undefined]>;
     minimumBlockWidth: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<number>, [undefined]>;
 }, {
-    features: import("@jbrowse/core/util").Feature[] | undefined; /**
-     * #getter
-     */
+    features: undefined | import("@jbrowse/core/util").Feature[];
     volatileWidth: number;
 } & {
     setDisplayedRegions(regions: import("@jbrowse/core/util").Region[]): void;
@@ -127,24 +123,24 @@ declare const DotplotHView: import("mobx-state-tree").IModelType<{
         offset: number;
         start: number;
         end: number;
-        reversed?: boolean | undefined;
+        reversed?: boolean;
     };
     bpToPx({ refName, coord, regionNumber, }: {
         refName: string;
         coord: number;
-        regionNumber?: number | undefined;
+        regionNumber?: number;
     }): number | undefined;
 } & {
     setFeatures(features: import("@jbrowse/core/util").Feature[]): void;
     showAllRegions(): void;
     zoomOut(): void;
     zoomIn(): void;
-    zoomTo(bpPerPx: number, offset?: number | undefined): number;
+    zoomTo(bpPerPx: number, offset?: number): number;
     scrollTo(offsetPx: number): number;
     centerAt(coord: number, refName: string | undefined, regionNumber: number): void;
     scroll(distance: number): number;
 } & {
-    moveTo(start?: import("@jbrowse/core/util/Base1DUtils").BpOffset | undefined, end?: import("@jbrowse/core/util/Base1DUtils").BpOffset | undefined): void;
+    moveTo(start?: import("@jbrowse/core/util/Base1DUtils").BpOffset, end?: import("@jbrowse/core/util/Base1DUtils").BpOffset): void;
 } & {
     /**
      * #action
@@ -191,9 +187,7 @@ declare const DotplotVView: import("mobx-state-tree").IModelType<{
     interRegionPaddingWidth: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<number>, [undefined]>;
     minimumBlockWidth: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<number>, [undefined]>;
 }, {
-    features: import("@jbrowse/core/util").Feature[] | undefined; /**
-     * #getter
-     */
+    features: undefined | import("@jbrowse/core/util").Feature[];
     volatileWidth: number;
 } & {
     setDisplayedRegions(regions: import("@jbrowse/core/util").Region[]): void;
@@ -220,24 +214,24 @@ declare const DotplotVView: import("mobx-state-tree").IModelType<{
         offset: number;
         start: number;
         end: number;
-        reversed?: boolean | undefined;
+        reversed?: boolean;
     };
     bpToPx({ refName, coord, regionNumber, }: {
         refName: string;
         coord: number;
-        regionNumber?: number | undefined;
+        regionNumber?: number;
     }): number | undefined;
 } & {
     setFeatures(features: import("@jbrowse/core/util").Feature[]): void;
     showAllRegions(): void;
     zoomOut(): void;
     zoomIn(): void;
-    zoomTo(bpPerPx: number, offset?: number | undefined): number;
+    zoomTo(bpPerPx: number, offset?: number): number;
     scrollTo(offsetPx: number): number;
     centerAt(coord: number, refName: string | undefined, regionNumber: number): void;
     scroll(distance: number): number;
 } & {
-    moveTo(start?: import("@jbrowse/core/util/Base1DUtils").BpOffset | undefined, end?: import("@jbrowse/core/util/Base1DUtils").BpOffset | undefined): void;
+    moveTo(start?: import("@jbrowse/core/util/Base1DUtils").BpOffset, end?: import("@jbrowse/core/util/Base1DUtils").BpOffset): void;
 } & {
     /**
      * #action

package/esm/DotplotView/model.d.ts

@@ -42,7 +42,7 @@ export default function stateModelFactory(pm: PluginManager): import("mobx-state
         interRegionPaddingWidth: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<number>, [undefined]>;
         minimumBlockWidth: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<number>, [undefined]>;
     }, {
-        features: import("@jbrowse/core/util").Feature[] | undefined;
+        features: undefined | import("@jbrowse/core/util").Feature[];
         volatileWidth: number;
     } & {
         setDisplayedRegions(regions: import("@jbrowse/core/util").Region[]): void;
@@ -69,28 +69,24 @@ export default function stateModelFactory(pm: PluginManager): import("mobx-state
             offset: number;
             start: number;
             end: number;
-            reversed?: boolean | undefined;
+            reversed?: boolean;
         };
         bpToPx({ refName, coord, regionNumber, }: {
             refName: string;
             coord: number;
-            regionNumber?: number | undefined;
+            regionNumber?: number;
         }): number | undefined;
     } & {
-        setFeatures(features: import("@jbrowse/core/util").Feature[]): void; /**
-         * #property
-         */
+        setFeatures(features: import("@jbrowse/core/util").Feature[]): void;
         showAllRegions(): void;
         zoomOut(): void;
-        zoomIn(): void; /**
-         * #property
-         */
-        zoomTo(bpPerPx: number, offset?: number | undefined): number;
+        zoomIn(): void;
+        zoomTo(bpPerPx: number, offset?: number): number;
         scrollTo(offsetPx: number): number;
         centerAt(coord: number, refName: string | undefined, regionNumber: number): void;
         scroll(distance: number): number;
     } & {
-        moveTo(start?: import("@jbrowse/core/util/Base1DUtils").BpOffset | undefined, end?: import("@jbrowse/core/util/Base1DUtils").BpOffset | undefined): void;
+        moveTo(start?: import("@jbrowse/core/util/Base1DUtils").BpOffset, end?: import("@jbrowse/core/util/Base1DUtils").BpOffset): void;
     } & {
         setScaleFactor(n: number): void;
         center(): void;
@@ -112,7 +108,7 @@ export default function stateModelFactory(pm: PluginManager): import("mobx-state
         interRegionPaddingWidth: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<number>, [undefined]>;
         minimumBlockWidth: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<number>, [undefined]>;
     }, {
-        features: import("@jbrowse/core/util").Feature[] | undefined;
+        features: undefined | import("@jbrowse/core/util").Feature[];
         volatileWidth: number;
     } & {
         setDisplayedRegions(regions: import("@jbrowse/core/util").Region[]): void;
@@ -139,28 +135,24 @@ export default function stateModelFactory(pm: PluginManager): import("mobx-state
             offset: number;
             start: number;
             end: number;
-            reversed?: boolean | undefined;
+            reversed?: boolean;
         };
         bpToPx({ refName, coord, regionNumber, }: {
             refName: string;
             coord: number;
-            regionNumber?: number | undefined;
+            regionNumber?: number;
         }): number | undefined;
     } & {
-        setFeatures(features: import("@jbrowse/core/util").Feature[]): void; /**
-         * #property
-         */
+        setFeatures(features: import("@jbrowse/core/util").Feature[]): void;
         showAllRegions(): void;
         zoomOut(): void;
-        zoomIn(): void; /**
-         * #property
-         */
-        zoomTo(bpPerPx: number, offset?: number | undefined): number;
+        zoomIn(): void;
+        zoomTo(bpPerPx: number, offset?: number): number;
         scrollTo(offsetPx: number): number;
         centerAt(coord: number, refName: string | undefined, regionNumber: number): void;
         scroll(distance: number): number;
     } & {
-        moveTo(start?: import("@jbrowse/core/util/Base1DUtils").BpOffset | undefined, end?: import("@jbrowse/core/util/Base1DUtils").BpOffset | undefined): void;
+        moveTo(start?: import("@jbrowse/core/util/Base1DUtils").BpOffset, end?: import("@jbrowse/core/util/Base1DUtils").BpOffset): void;
     } & {
         setScaleFactor(n: number): void;
         center(): void;
@@ -189,13 +181,15 @@ export default function stateModelFactory(pm: PluginManager): import("mobx-state
         readonly canConfigure: boolean | ({
             [x: string]: any;
         } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
-            setSubschema(slotName: string, data: unknown): any;
+            setSubschema(slotName: string, data: Record<string, unknown>): Record<string, unknown> | ({
+                [x: string]: any;
+            } & import("mobx-state-tree/dist/internal").NonEmptyObject & any & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>);
         } & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>) | undefined;
     } & {
         setMinimized(flag: boolean): void;
-        showDisplay(displayId: string, initialSnapshot?: {} | undefined): void;
+        showDisplay(displayId: string, initialSnapshot?: {}): void;
         hideDisplay(displayId: string): number;
-        replaceDisplay(oldId: string, newId: string, initialSnapshot?: {} | undefined): void;
+        replaceDisplay(oldId: string, newId: string, initialSnapshot?: {}): void;
     } & {
         trackMenuItems(): (import("@jbrowse/core/ui").MenuDivider | import("@jbrowse/core/ui").MenuSubHeader | import("@jbrowse/core/ui").NormalMenuItem | import("@jbrowse/core/ui").CheckboxMenuItem | import("@jbrowse/core/ui").RadioMenuItem | import("@jbrowse/core/ui").SubMenuItem | {
             type: string;
@@ -285,7 +279,7 @@ export default function stateModelFactory(pm: PluginManager): import("mobx-state
         interRegionPaddingWidth: number;
         minimumBlockWidth: number;
     } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
-        features: import("@jbrowse/core/util").Feature[] | undefined;
+        features: undefined | import("@jbrowse/core/util").Feature[];
         volatileWidth: number;
     } & {
         setDisplayedRegions(regions: import("@jbrowse/core/util").Region[]): void;
@@ -312,28 +306,24 @@ export default function stateModelFactory(pm: PluginManager): import("mobx-state
             offset: number;
             start: number;
             end: number;
-            reversed?: boolean | undefined;
+            reversed?: boolean;
         };
         bpToPx({ refName, coord, regionNumber, }: {
             refName: string;
             coord: number;
-            regionNumber?: number | undefined;
+            regionNumber?: number;
         }): number | undefined;
     } & {
-        setFeatures(features: import("@jbrowse/core/util").Feature[]): void; /**
-         * #property
-         */
+        setFeatures(features: import("@jbrowse/core/util").Feature[]): void;
         showAllRegions(): void;
         zoomOut(): void;
-        zoomIn(): void; /**
-         * #property
-         */
-        zoomTo(bpPerPx: number, offset?: number | undefined): number;
+        zoomIn(): void;
+        zoomTo(bpPerPx: number, offset?: number): number;
         scrollTo(offsetPx: number): number;
         centerAt(coord: number, refName: string | undefined, regionNumber: number): void;
         scroll(distance: number): number;
     } & {
-        moveTo(start?: import("@jbrowse/core/util/Base1DUtils").BpOffset | undefined, end?: import("@jbrowse/core/util/Base1DUtils").BpOffset | undefined): void;
+        moveTo(start?: import("@jbrowse/core/util/Base1DUtils").BpOffset, end?: import("@jbrowse/core/util/Base1DUtils").BpOffset): void;
     } & {
         setScaleFactor(n: number): void;
         center(): void;
@@ -354,7 +344,7 @@ export default function stateModelFactory(pm: PluginManager): import("mobx-state
         interRegionPaddingWidth: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<number>, [undefined]>;
         minimumBlockWidth: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<number>, [undefined]>;
     }, {
-        features: import("@jbrowse/core/util").Feature[] | undefined;
+        features: undefined | import("@jbrowse/core/util").Feature[];
         volatileWidth: number;
     } & {
         setDisplayedRegions(regions: import("@jbrowse/core/util").Region[]): void;
@@ -381,28 +371,24 @@ export default function stateModelFactory(pm: PluginManager): import("mobx-state
             offset: number;
             start: number;
             end: number;
-            reversed?: boolean | undefined;
+            reversed?: boolean;
         };
         bpToPx({ refName, coord, regionNumber, }: {
             refName: string;
             coord: number;
-            regionNumber?: number | undefined;
+            regionNumber?: number;
         }): number | undefined;
     } & {
-        setFeatures(features: import("@jbrowse/core/util").Feature[]): void; /**
-         * #property
-         */
+        setFeatures(features: import("@jbrowse/core/util").Feature[]): void;
         showAllRegions(): void;
         zoomOut(): void;
-        zoomIn(): void; /**
-         * #property
-         */
-        zoomTo(bpPerPx: number, offset?: number | undefined): number;
+        zoomIn(): void;
+        zoomTo(bpPerPx: number, offset?: number): number;
         scrollTo(offsetPx: number): number;
         centerAt(coord: number, refName: string | undefined, regionNumber: number): void;
         scroll(distance: number): number;
     } & {
-        moveTo(start?: import("@jbrowse/core/util/Base1DUtils").BpOffset | undefined, end?: import("@jbrowse/core/util/Base1DUtils").BpOffset | undefined): void;
+        moveTo(start?: import("@jbrowse/core/util/Base1DUtils").BpOffset, end?: import("@jbrowse/core/util/Base1DUtils").BpOffset): void;
     } & {
         setScaleFactor(n: number): void;
         center(): void;
@@ -512,7 +498,7 @@ export default function stateModelFactory(pm: PluginManager): import("mobx-state
         offset: number;
         start: number;
         end: number;
-        reversed?: boolean | undefined;
+        reversed?: boolean;
     }[] | undefined;
     /**
      * #action

package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@jbrowse/plugin-dotplot-view",
-  "version": "2.12.0",
+  "version": "2.12.1",
   "description": "JBrowse 2 dotplot view",
   "keywords": [
     "jbrowse",
@@ -61,5 +61,5 @@
   "publishConfig": {
     "access": "public"
   },
-  "gitHead": "935f2602d29abc737bb1f493a922b6218d023ae2"
+  "gitHead": "20f16ae5a56ae5e4806aaa373131e540b0b5b0fd"
 }