@jbrowse/plugin-dotplot-view 2.11.2 → 2.12.0

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Files changed (9) hide show
  1. package/dist/DotplotView/1dview.d.ts +15 -42
  2. package/dist/DotplotView/components/DotplotView.js +4 -6
  3. package/dist/DotplotView/components/DotplotWarnings.js +4 -2
  4. package/dist/DotplotView/model.d.ts +38 -105
  5. package/esm/DotplotView/1dview.d.ts +15 -42
  6. package/esm/DotplotView/components/DotplotView.js +4 -6
  7. package/esm/DotplotView/components/DotplotWarnings.js +4 -2
  8. package/esm/DotplotView/model.d.ts +38 -105
  9. package/package.json +3 -5
package/dist/DotplotView/1dview.d.ts CHANGED
@@ -1,24 +1,15 @@
1
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  import { Instance } from 'mobx-state-tree';
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  declare const Dotplot1DView: import("mobx-state-tree").IModelType<{
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  id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
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- displayedRegions: import("mobx-state-tree").IArrayType<import("mobx-state-tree").IModelType<{
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- refName: import("mobx-state-tree").ISimpleType<string>;
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- start: import("mobx-state-tree").ISimpleType<number>;
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- end: import("mobx-state-tree").ISimpleType<number>;
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- reversed: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<boolean>, [undefined]>;
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- } & {
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- assemblyName: import("mobx-state-tree").ISimpleType<string>; /**
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- * #getter
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- */
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- }, {
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- setRefName(newRefName: string): void;
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- }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
4
+ displayedRegions: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").IType<import("@jbrowse/core/util").Region[], import("@jbrowse/core/util").Region[], import("@jbrowse/core/util").Region[]>, [undefined]>;
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  bpPerPx: import("mobx-state-tree").IType<number | undefined, number, number>;
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  offsetPx: import("mobx-state-tree").IType<number | undefined, number, number>;
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  interRegionPaddingWidth: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<number>, [undefined]>;
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  minimumBlockWidth: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<number>, [undefined]>;
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  }, {
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- features: import("@jbrowse/core/util").Feature[] | undefined;
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+ features: import("@jbrowse/core/util").Feature[] | undefined; /**
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+ * #getter
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+ */
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  volatileWidth: number;
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  } & {
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  setDisplayedRegions(regions: import("@jbrowse/core/util").Region[]): void;
@@ -45,7 +36,7 @@ declare const Dotplot1DView: import("mobx-state-tree").IModelType<{
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  offset: number;
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  start: number;
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  end: number;
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- reversed: boolean;
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+ reversed?: boolean | undefined;
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  };
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  bpToPx({ refName, coord, regionNumber, }: {
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  refName: string;
@@ -101,24 +92,15 @@ declare const Dotplot1DView: import("mobx-state-tree").IModelType<{
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  }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>;
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  declare const DotplotHView: import("mobx-state-tree").IModelType<{
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  id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
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- displayedRegions: import("mobx-state-tree").IArrayType<import("mobx-state-tree").IModelType<{
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- refName: import("mobx-state-tree").ISimpleType<string>;
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- start: import("mobx-state-tree").ISimpleType<number>;
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- end: import("mobx-state-tree").ISimpleType<number>;
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- reversed: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<boolean>, [undefined]>;
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- } & {
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- assemblyName: import("mobx-state-tree").ISimpleType<string>; /**
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- * #getter
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- */
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- }, {
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- setRefName(newRefName: string): void;
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- }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
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+ displayedRegions: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").IType<import("@jbrowse/core/util").Region[], import("@jbrowse/core/util").Region[], import("@jbrowse/core/util").Region[]>, [undefined]>;
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  bpPerPx: import("mobx-state-tree").IType<number | undefined, number, number>;
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  offsetPx: import("mobx-state-tree").IType<number | undefined, number, number>;
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  interRegionPaddingWidth: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<number>, [undefined]>;
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  minimumBlockWidth: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<number>, [undefined]>;
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  }, {
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- features: import("@jbrowse/core/util").Feature[] | undefined;
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+ features: import("@jbrowse/core/util").Feature[] | undefined; /**
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+ * #getter
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+ */
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  volatileWidth: number;
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  } & {
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  setDisplayedRegions(regions: import("@jbrowse/core/util").Region[]): void;
@@ -145,7 +127,7 @@ declare const DotplotHView: import("mobx-state-tree").IModelType<{
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  offset: number;
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  start: number;
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  end: number;
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- reversed: boolean;
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+ reversed?: boolean | undefined;
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  };
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  bpToPx({ refName, coord, regionNumber, }: {
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  refName: string;
@@ -203,24 +185,15 @@ declare const DotplotHView: import("mobx-state-tree").IModelType<{
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  }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>;
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  declare const DotplotVView: import("mobx-state-tree").IModelType<{
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  id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
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- displayedRegions: import("mobx-state-tree").IArrayType<import("mobx-state-tree").IModelType<{
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- refName: import("mobx-state-tree").ISimpleType<string>;
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- start: import("mobx-state-tree").ISimpleType<number>;
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- end: import("mobx-state-tree").ISimpleType<number>;
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- reversed: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<boolean>, [undefined]>;
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- } & {
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- assemblyName: import("mobx-state-tree").ISimpleType<string>; /**
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- * #getter
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- */
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- }, {
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- setRefName(newRefName: string): void;
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- }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
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+ displayedRegions: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").IType<import("@jbrowse/core/util").Region[], import("@jbrowse/core/util").Region[], import("@jbrowse/core/util").Region[]>, [undefined]>;
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  bpPerPx: import("mobx-state-tree").IType<number | undefined, number, number>;
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  offsetPx: import("mobx-state-tree").IType<number | undefined, number, number>;
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  interRegionPaddingWidth: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<number>, [undefined]>;
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  minimumBlockWidth: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<number>, [undefined]>;
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  }, {
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- features: import("@jbrowse/core/util").Feature[] | undefined;
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+ features: import("@jbrowse/core/util").Feature[] | undefined; /**
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+ * #getter
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+ */
224
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  volatileWidth: number;
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  } & {
226
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  setDisplayedRegions(regions: import("@jbrowse/core/util").Region[]): void;
@@ -247,7 +220,7 @@ declare const DotplotVView: import("mobx-state-tree").IModelType<{
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  offset: number;
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  start: number;
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  end: number;
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- reversed: boolean;
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+ reversed?: boolean | undefined;
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  };
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  bpToPx({ refName, coord, regionNumber, }: {
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  refName: string;
package/dist/DotplotView/components/DotplotView.js CHANGED
@@ -31,7 +31,6 @@ const ui_1 = require("@jbrowse/core/ui");
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  const mobx_react_1 = require("mobx-react");
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  const mobx_1 = require("mobx");
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  const mui_1 = require("tss-react/mui");
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- const normalize_wheel_1 = __importDefault(require("normalize-wheel"));
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  const ImportForm_1 = __importDefault(require("./ImportForm"));
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  const Header_1 = __importDefault(require("./Header"));
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  const Grid_1 = __importDefault(require("./Grid"));
@@ -121,11 +120,10 @@ const DotplotViewInternal = (0, mobx_react_1.observer)(function ({ model, }) {
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  (cursorMode === 'crosshair' && !ctrlKeyWasUsed);
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  // use non-React wheel handler to properly prevent body scrolling
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  (0, react_1.useEffect)(() => {
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- function onWheel(origEvent) {
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- const event = (0, normalize_wheel_1.default)(origEvent);
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- origEvent.preventDefault();
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- distanceX.current += event.pixelX;
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- distanceY.current -= event.pixelY;
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+ function onWheel(event) {
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+ event.preventDefault();
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+ distanceX.current += event.deltaX;
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+ distanceY.current -= event.deltaY;
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  if (!scheduled.current) {
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  scheduled.current = true;
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  window.requestAnimationFrame(() => {
package/dist/DotplotView/components/DotplotWarnings.js CHANGED
@@ -31,10 +31,12 @@ const WarningDialog = (0, react_1.lazy)(() => Promise.resolve().then(() => __imp
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  const DotplotWarnings = (0, mobx_react_1.observer)(function ({ model, }) {
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  const trackWarnings = model.tracks.filter(t => { var _a; return (_a = t.displays[0].warnings) === null || _a === void 0 ? void 0 : _a.length; });
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  const [shown, setShown] = (0, react_1.useState)(false);
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- return trackWarnings.length ? (react_1.default.createElement(material_1.Alert, { severity: "warning" },
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+ const [hide, setHide] = (0, react_1.useState)(false);
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+ return trackWarnings.length && !hide ? (react_1.default.createElement(material_1.Alert, { severity: "warning" },
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  "Warnings during render",
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  ' ',
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  react_1.default.createElement(material_1.Button, { onClick: () => setShown(true) }, "More info"),
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- shown ? (react_1.default.createElement(WarningDialog, { trackWarnings: trackWarnings, handleClose: () => setShown(false) })) : null)) : null;
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+ shown ? (react_1.default.createElement(WarningDialog, { trackWarnings: trackWarnings, handleClose: () => setShown(false) })) : null,
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+ react_1.default.createElement(material_1.Button, { variant: "contained", onClick: () => setHide(true) }, "Dismiss"))) : null;
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  });
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  exports.default = DotplotWarnings;
package/dist/DotplotView/model.d.ts CHANGED
@@ -36,16 +36,7 @@ export default function stateModelFactory(pm: PluginManager): import("mobx-state
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  drawCigar: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
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  hview: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").IModelType<{
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  id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
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- displayedRegions: import("mobx-state-tree").IArrayType<import("mobx-state-tree").IModelType<{
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- refName: import("mobx-state-tree").ISimpleType<string>;
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- start: import("mobx-state-tree").ISimpleType<number>;
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- end: import("mobx-state-tree").ISimpleType<number>;
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- reversed: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<boolean>, [undefined]>;
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- } & {
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- assemblyName: import("mobx-state-tree").ISimpleType<string>;
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- }, {
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- setRefName(newRefName: string): void;
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- }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
39
+ displayedRegions: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").IType<import("@jbrowse/core/util").Region[], import("@jbrowse/core/util").Region[], import("@jbrowse/core/util").Region[]>, [undefined]>;
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  bpPerPx: import("mobx-state-tree").IType<number | undefined, number, number>;
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  offsetPx: import("mobx-state-tree").IType<number | undefined, number, number>;
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  interRegionPaddingWidth: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<number>, [undefined]>;
@@ -63,12 +54,7 @@ export default function stateModelFactory(pm: PluginManager): import("mobx-state
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  readonly displayedRegionsTotalPx: number;
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  readonly maxOffset: number;
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  readonly minOffset: number;
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- readonly totalBp: number; /**
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- * #stateModel DotplotView
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- * #category view
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- * extends
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- * - [BaseViewModel](../baseviewmodel)
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- */
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+ readonly totalBp: number;
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  } & {
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  readonly dynamicBlocks: import("@jbrowse/core/util/blockTypes").BlockSet;
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  readonly staticBlocks: import("@jbrowse/core/util/blockTypes").BlockSet;
@@ -77,15 +63,13 @@ export default function stateModelFactory(pm: PluginManager): import("mobx-state
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  pxToBp(px: number): {
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  coord: number;
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  index: number;
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- refName: string; /**
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- * #property
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- */
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+ refName: string;
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  oob: boolean;
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  assemblyName: string;
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  offset: number;
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  start: number;
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  end: number;
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- reversed: boolean;
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+ reversed?: boolean | undefined;
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  };
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  bpToPx({ refName, coord, regionNumber, }: {
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  refName: string;
@@ -93,12 +77,14 @@ export default function stateModelFactory(pm: PluginManager): import("mobx-state
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  regionNumber?: number | undefined;
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  }): number | undefined;
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  } & {
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- setFeatures(features: import("@jbrowse/core/util").Feature[]): void;
80
+ setFeatures(features: import("@jbrowse/core/util").Feature[]): void; /**
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+ * #property
82
+ */
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  showAllRegions(): void;
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- zoomOut(): void; /**
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+ zoomOut(): void;
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+ zoomIn(): void; /**
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  * #property
100
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  */
101
- zoomIn(): void;
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  zoomTo(bpPerPx: number, offset?: number | undefined): number;
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  scrollTo(offsetPx: number): number;
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  centerAt(coord: number, refName: string | undefined, regionNumber: number): void;
@@ -120,16 +106,7 @@ export default function stateModelFactory(pm: PluginManager): import("mobx-state
120
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  }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>, [undefined]>;
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  vview: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").IModelType<{
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  id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
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- displayedRegions: import("mobx-state-tree").IArrayType<import("mobx-state-tree").IModelType<{
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- refName: import("mobx-state-tree").ISimpleType<string>;
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- start: import("mobx-state-tree").ISimpleType<number>;
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- end: import("mobx-state-tree").ISimpleType<number>;
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- reversed: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<boolean>, [undefined]>;
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- } & {
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- assemblyName: import("mobx-state-tree").ISimpleType<string>;
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- }, {
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- setRefName(newRefName: string): void;
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- }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
109
+ displayedRegions: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").IType<import("@jbrowse/core/util").Region[], import("@jbrowse/core/util").Region[], import("@jbrowse/core/util").Region[]>, [undefined]>;
133
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  bpPerPx: import("mobx-state-tree").IType<number | undefined, number, number>;
134
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  offsetPx: import("mobx-state-tree").IType<number | undefined, number, number>;
135
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  interRegionPaddingWidth: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<number>, [undefined]>;
@@ -147,12 +124,7 @@ export default function stateModelFactory(pm: PluginManager): import("mobx-state
147
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  readonly displayedRegionsTotalPx: number;
148
125
  readonly maxOffset: number;
149
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  readonly minOffset: number;
150
- readonly totalBp: number; /**
151
- * #stateModel DotplotView
152
- * #category view
153
- * extends
154
- * - [BaseViewModel](../baseviewmodel)
155
- */
127
+ readonly totalBp: number;
156
128
  } & {
157
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  readonly dynamicBlocks: import("@jbrowse/core/util/blockTypes").BlockSet;
158
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  readonly staticBlocks: import("@jbrowse/core/util/blockTypes").BlockSet;
@@ -161,15 +133,13 @@ export default function stateModelFactory(pm: PluginManager): import("mobx-state
161
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  pxToBp(px: number): {
162
134
  coord: number;
163
135
  index: number;
164
- refName: string; /**
165
- * #property
166
- */
136
+ refName: string;
167
137
  oob: boolean;
168
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  assemblyName: string;
169
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  offset: number;
170
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  start: number;
171
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  end: number;
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- reversed: boolean;
142
+ reversed?: boolean | undefined;
173
143
  };
174
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  bpToPx({ refName, coord, regionNumber, }: {
175
145
  refName: string;
@@ -177,12 +147,14 @@ export default function stateModelFactory(pm: PluginManager): import("mobx-state
177
147
  regionNumber?: number | undefined;
178
148
  }): number | undefined;
179
149
  } & {
180
- setFeatures(features: import("@jbrowse/core/util").Feature[]): void;
150
+ setFeatures(features: import("@jbrowse/core/util").Feature[]): void; /**
151
+ * #property
152
+ */
181
153
  showAllRegions(): void;
182
- zoomOut(): void; /**
154
+ zoomOut(): void;
155
+ zoomIn(): void; /**
183
156
  * #property
184
157
  */
185
- zoomIn(): void;
186
158
  zoomTo(bpPerPx: number, offset?: number | undefined): number;
187
159
  scrollTo(offsetPx: number): number;
188
160
  centerAt(coord: number, refName: string | undefined, regionNumber: number): void;
@@ -307,25 +279,7 @@ export default function stateModelFactory(pm: PluginManager): import("mobx-state
307
279
  */
308
280
  readonly views: ({
309
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  id: string;
310
- displayedRegions: import("mobx-state-tree").IMSTArray<import("mobx-state-tree").IModelType<{
311
- refName: import("mobx-state-tree").ISimpleType<string>;
312
- start: import("mobx-state-tree").ISimpleType<number>;
313
- end: import("mobx-state-tree").ISimpleType<number>;
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- reversed: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<boolean>, [undefined]>;
315
- } & {
316
- assemblyName: import("mobx-state-tree").ISimpleType<string>;
317
- }, {
318
- setRefName(newRefName: string): void;
319
- }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>> & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IArrayType<import("mobx-state-tree").IModelType<{
320
- refName: import("mobx-state-tree").ISimpleType<string>;
321
- start: import("mobx-state-tree").ISimpleType<number>;
322
- end: import("mobx-state-tree").ISimpleType<number>;
323
- reversed: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<boolean>, [undefined]>;
324
- } & {
325
- assemblyName: import("mobx-state-tree").ISimpleType<string>;
326
- }, {
327
- setRefName(newRefName: string): void;
328
- }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>>;
282
+ displayedRegions: import("@jbrowse/core/util").Region[] & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").IType<import("@jbrowse/core/util").Region[], import("@jbrowse/core/util").Region[], import("@jbrowse/core/util").Region[]>, [undefined]>>;
329
283
  bpPerPx: number;
330
284
  offsetPx: number;
331
285
  interRegionPaddingWidth: number;
@@ -343,12 +297,7 @@ export default function stateModelFactory(pm: PluginManager): import("mobx-state
343
297
  readonly displayedRegionsTotalPx: number;
344
298
  readonly maxOffset: number;
345
299
  readonly minOffset: number;
346
- readonly totalBp: number; /**
347
- * #stateModel DotplotView
348
- * #category view
349
- * extends
350
- * - [BaseViewModel](../baseviewmodel)
351
- */
300
+ readonly totalBp: number;
352
301
  } & {
353
302
  readonly dynamicBlocks: import("@jbrowse/core/util/blockTypes").BlockSet;
354
303
  readonly staticBlocks: import("@jbrowse/core/util/blockTypes").BlockSet;
@@ -357,15 +306,13 @@ export default function stateModelFactory(pm: PluginManager): import("mobx-state
357
306
  pxToBp(px: number): {
358
307
  coord: number;
359
308
  index: number;
360
- refName: string; /**
361
- * #property
362
- */
309
+ refName: string;
363
310
  oob: boolean;
364
311
  assemblyName: string;
365
312
  offset: number;
366
313
  start: number;
367
314
  end: number;
368
- reversed: boolean;
315
+ reversed?: boolean | undefined;
369
316
  };
370
317
  bpToPx({ refName, coord, regionNumber, }: {
371
318
  refName: string;
@@ -373,12 +320,14 @@ export default function stateModelFactory(pm: PluginManager): import("mobx-state
373
320
  regionNumber?: number | undefined;
374
321
  }): number | undefined;
375
322
  } & {
376
- setFeatures(features: import("@jbrowse/core/util").Feature[]): void;
323
+ setFeatures(features: import("@jbrowse/core/util").Feature[]): void; /**
324
+ * #property
325
+ */
377
326
  showAllRegions(): void;
378
- zoomOut(): void; /**
327
+ zoomOut(): void;
328
+ zoomIn(): void; /**
379
329
  * #property
380
330
  */
381
- zoomIn(): void;
382
331
  zoomTo(bpPerPx: number, offset?: number | undefined): number;
383
332
  scrollTo(offsetPx: number): number;
384
333
  centerAt(coord: number, refName: string | undefined, regionNumber: number): void;
@@ -399,16 +348,7 @@ export default function stateModelFactory(pm: PluginManager): import("mobx-state
399
348
  readonly width: any;
400
349
  } & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").IModelType<{
401
350
  id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
402
- displayedRegions: import("mobx-state-tree").IArrayType<import("mobx-state-tree").IModelType<{
403
- refName: import("mobx-state-tree").ISimpleType<string>;
404
- start: import("mobx-state-tree").ISimpleType<number>;
405
- end: import("mobx-state-tree").ISimpleType<number>;
406
- reversed: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<boolean>, [undefined]>;
407
- } & {
408
- assemblyName: import("mobx-state-tree").ISimpleType<string>;
409
- }, {
410
- setRefName(newRefName: string): void;
411
- }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
351
+ displayedRegions: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").IType<import("@jbrowse/core/util").Region[], import("@jbrowse/core/util").Region[], import("@jbrowse/core/util").Region[]>, [undefined]>;
412
352
  bpPerPx: import("mobx-state-tree").IType<number | undefined, number, number>;
413
353
  offsetPx: import("mobx-state-tree").IType<number | undefined, number, number>;
414
354
  interRegionPaddingWidth: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<number>, [undefined]>;
@@ -426,12 +366,7 @@ export default function stateModelFactory(pm: PluginManager): import("mobx-state
426
366
  readonly displayedRegionsTotalPx: number;
427
367
  readonly maxOffset: number;
428
368
  readonly minOffset: number;
429
- readonly totalBp: number; /**
430
- * #stateModel DotplotView
431
- * #category view
432
- * extends
433
- * - [BaseViewModel](../baseviewmodel)
434
- */
369
+ readonly totalBp: number;
435
370
  } & {
436
371
  readonly dynamicBlocks: import("@jbrowse/core/util/blockTypes").BlockSet;
437
372
  readonly staticBlocks: import("@jbrowse/core/util/blockTypes").BlockSet;
@@ -440,15 +375,13 @@ export default function stateModelFactory(pm: PluginManager): import("mobx-state
440
375
  pxToBp(px: number): {
441
376
  coord: number;
442
377
  index: number;
443
- refName: string; /**
444
- * #property
445
- */
378
+ refName: string;
446
379
  oob: boolean;
447
380
  assemblyName: string;
448
381
  offset: number;
449
382
  start: number;
450
383
  end: number;
451
- reversed: boolean;
384
+ reversed?: boolean | undefined;
452
385
  };
453
386
  bpToPx({ refName, coord, regionNumber, }: {
454
387
  refName: string;
@@ -456,12 +389,14 @@ export default function stateModelFactory(pm: PluginManager): import("mobx-state
456
389
  regionNumber?: number | undefined;
457
390
  }): number | undefined;
458
391
  } & {
459
- setFeatures(features: import("@jbrowse/core/util").Feature[]): void;
392
+ setFeatures(features: import("@jbrowse/core/util").Feature[]): void; /**
393
+ * #property
394
+ */
460
395
  showAllRegions(): void;
461
- zoomOut(): void; /**
396
+ zoomOut(): void;
397
+ zoomIn(): void; /**
462
398
  * #property
463
399
  */
464
- zoomIn(): void;
465
400
  zoomTo(bpPerPx: number, offset?: number | undefined): number;
466
401
  scrollTo(offsetPx: number): number;
467
402
  centerAt(coord: number, refName: string | undefined, regionNumber: number): void;
@@ -571,15 +506,13 @@ export default function stateModelFactory(pm: PluginManager): import("mobx-state
571
506
  getCoords(mousedown: Coord, mouseup: Coord): {
572
507
  coord: number;
573
508
  index: number;
574
- refName: string; /**
575
- * #property
576
- */
509
+ refName: string;
577
510
  oob: boolean;
578
511
  assemblyName: string;
579
512
  offset: number;
580
513
  start: number;
581
514
  end: number;
582
- reversed: boolean;
515
+ reversed?: boolean | undefined;
583
516
  }[] | undefined;
584
517
  /**
585
518
  * #action
package/esm/DotplotView/1dview.d.ts CHANGED
@@ -1,24 +1,15 @@
1
1
  import { Instance } from 'mobx-state-tree';
2
2
  declare const Dotplot1DView: import("mobx-state-tree").IModelType<{
3
3
  id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
4
- displayedRegions: import("mobx-state-tree").IArrayType<import("mobx-state-tree").IModelType<{
5
- refName: import("mobx-state-tree").ISimpleType<string>;
6
- start: import("mobx-state-tree").ISimpleType<number>;
7
- end: import("mobx-state-tree").ISimpleType<number>;
8
- reversed: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<boolean>, [undefined]>;
9
- } & {
10
- assemblyName: import("mobx-state-tree").ISimpleType<string>; /**
11
- * #getter
12
- */
13
- }, {
14
- setRefName(newRefName: string): void;
15
- }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
4
+ displayedRegions: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").IType<import("@jbrowse/core/util").Region[], import("@jbrowse/core/util").Region[], import("@jbrowse/core/util").Region[]>, [undefined]>;
16
5
  bpPerPx: import("mobx-state-tree").IType<number | undefined, number, number>;
17
6
  offsetPx: import("mobx-state-tree").IType<number | undefined, number, number>;
18
7
  interRegionPaddingWidth: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<number>, [undefined]>;
19
8
  minimumBlockWidth: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<number>, [undefined]>;
20
9
  }, {
21
- features: import("@jbrowse/core/util").Feature[] | undefined;
10
+ features: import("@jbrowse/core/util").Feature[] | undefined; /**
11
+ * #getter
12
+ */
22
13
  volatileWidth: number;
23
14
  } & {
24
15
  setDisplayedRegions(regions: import("@jbrowse/core/util").Region[]): void;
@@ -45,7 +36,7 @@ declare const Dotplot1DView: import("mobx-state-tree").IModelType<{
45
36
  offset: number;
46
37
  start: number;
47
38
  end: number;
48
- reversed: boolean;
39
+ reversed?: boolean | undefined;
49
40
  };
50
41
  bpToPx({ refName, coord, regionNumber, }: {
51
42
  refName: string;
@@ -101,24 +92,15 @@ declare const Dotplot1DView: import("mobx-state-tree").IModelType<{
101
92
  }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>;
102
93
  declare const DotplotHView: import("mobx-state-tree").IModelType<{
103
94
  id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
104
- displayedRegions: import("mobx-state-tree").IArrayType<import("mobx-state-tree").IModelType<{
105
- refName: import("mobx-state-tree").ISimpleType<string>;
106
- start: import("mobx-state-tree").ISimpleType<number>;
107
- end: import("mobx-state-tree").ISimpleType<number>;
108
- reversed: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<boolean>, [undefined]>;
109
- } & {
110
- assemblyName: import("mobx-state-tree").ISimpleType<string>; /**
111
- * #getter
112
- */
113
- }, {
114
- setRefName(newRefName: string): void;
115
- }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
95
+ displayedRegions: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").IType<import("@jbrowse/core/util").Region[], import("@jbrowse/core/util").Region[], import("@jbrowse/core/util").Region[]>, [undefined]>;
116
96
  bpPerPx: import("mobx-state-tree").IType<number | undefined, number, number>;
117
97
  offsetPx: import("mobx-state-tree").IType<number | undefined, number, number>;
118
98
  interRegionPaddingWidth: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<number>, [undefined]>;
119
99
  minimumBlockWidth: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<number>, [undefined]>;
120
100
  }, {
121
- features: import("@jbrowse/core/util").Feature[] | undefined;
101
+ features: import("@jbrowse/core/util").Feature[] | undefined; /**
102
+ * #getter
103
+ */
122
104
  volatileWidth: number;
123
105
  } & {
124
106
  setDisplayedRegions(regions: import("@jbrowse/core/util").Region[]): void;
@@ -145,7 +127,7 @@ declare const DotplotHView: import("mobx-state-tree").IModelType<{
145
127
  offset: number;
146
128
  start: number;
147
129
  end: number;
148
- reversed: boolean;
130
+ reversed?: boolean | undefined;
149
131
  };
150
132
  bpToPx({ refName, coord, regionNumber, }: {
151
133
  refName: string;
@@ -203,24 +185,15 @@ declare const DotplotHView: import("mobx-state-tree").IModelType<{
203
185
  }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>;
204
186
  declare const DotplotVView: import("mobx-state-tree").IModelType<{
205
187
  id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
206
- displayedRegions: import("mobx-state-tree").IArrayType<import("mobx-state-tree").IModelType<{
207
- refName: import("mobx-state-tree").ISimpleType<string>;
208
- start: import("mobx-state-tree").ISimpleType<number>;
209
- end: import("mobx-state-tree").ISimpleType<number>;
210
- reversed: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<boolean>, [undefined]>;
211
- } & {
212
- assemblyName: import("mobx-state-tree").ISimpleType<string>; /**
213
- * #getter
214
- */
215
- }, {
216
- setRefName(newRefName: string): void;
217
- }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
188
+ displayedRegions: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").IType<import("@jbrowse/core/util").Region[], import("@jbrowse/core/util").Region[], import("@jbrowse/core/util").Region[]>, [undefined]>;
218
189
  bpPerPx: import("mobx-state-tree").IType<number | undefined, number, number>;
219
190
  offsetPx: import("mobx-state-tree").IType<number | undefined, number, number>;
220
191
  interRegionPaddingWidth: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<number>, [undefined]>;
221
192
  minimumBlockWidth: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<number>, [undefined]>;
222
193
  }, {
223
- features: import("@jbrowse/core/util").Feature[] | undefined;
194
+ features: import("@jbrowse/core/util").Feature[] | undefined; /**
195
+ * #getter
196
+ */
224
197
  volatileWidth: number;
225
198
  } & {
226
199
  setDisplayedRegions(regions: import("@jbrowse/core/util").Region[]): void;
@@ -247,7 +220,7 @@ declare const DotplotVView: import("mobx-state-tree").IModelType<{
247
220
  offset: number;
248
221
  start: number;
249
222
  end: number;
250
- reversed: boolean;
223
+ reversed?: boolean | undefined;
251
224
  };
252
225
  bpToPx({ refName, coord, regionNumber, }: {
253
226
  refName: string;
package/esm/DotplotView/components/DotplotView.js CHANGED
@@ -3,7 +3,6 @@ import { LoadingEllipses, Menu, ResizeHandle } from '@jbrowse/core/ui';
3
3
  import { observer } from 'mobx-react';
4
4
  import { transaction } from 'mobx';
5
5
  import { makeStyles } from 'tss-react/mui';
6
- import normalizeWheel from 'normalize-wheel';
7
6
  import ImportForm from './ImportForm';
8
7
  import Header from './Header';
9
8
  import Grid from './Grid';
@@ -93,11 +92,10 @@ const DotplotViewInternal = observer(function ({ model, }) {
93
92
  (cursorMode === 'crosshair' && !ctrlKeyWasUsed);
94
93
  // use non-React wheel handler to properly prevent body scrolling
95
94
  useEffect(() => {
96
- function onWheel(origEvent) {
97
- const event = normalizeWheel(origEvent);
98
- origEvent.preventDefault();
99
- distanceX.current += event.pixelX;
100
- distanceY.current -= event.pixelY;
95
+ function onWheel(event) {
96
+ event.preventDefault();
97
+ distanceX.current += event.deltaX;
98
+ distanceY.current -= event.deltaY;
101
99
  if (!scheduled.current) {
102
100
  scheduled.current = true;
103
101
  window.requestAnimationFrame(() => {
package/esm/DotplotView/components/DotplotWarnings.js CHANGED
@@ -6,10 +6,12 @@ const WarningDialog = lazy(() => import('./WarningDialog'));
6
6
  const DotplotWarnings = observer(function ({ model, }) {
7
7
  const trackWarnings = model.tracks.filter(t => { var _a; return (_a = t.displays[0].warnings) === null || _a === void 0 ? void 0 : _a.length; });
8
8
  const [shown, setShown] = useState(false);
9
- return trackWarnings.length ? (React.createElement(Alert, { severity: "warning" },
9
+ const [hide, setHide] = useState(false);
10
+ return trackWarnings.length && !hide ? (React.createElement(Alert, { severity: "warning" },
10
11
  "Warnings during render",
11
12
  ' ',
12
13
  React.createElement(Button, { onClick: () => setShown(true) }, "More info"),
13
- shown ? (React.createElement(WarningDialog, { trackWarnings: trackWarnings, handleClose: () => setShown(false) })) : null)) : null;
14
+ shown ? (React.createElement(WarningDialog, { trackWarnings: trackWarnings, handleClose: () => setShown(false) })) : null,
15
+ React.createElement(Button, { variant: "contained", onClick: () => setHide(true) }, "Dismiss"))) : null;
14
16
  });
15
17
  export default DotplotWarnings;
package/esm/DotplotView/model.d.ts CHANGED
@@ -36,16 +36,7 @@ export default function stateModelFactory(pm: PluginManager): import("mobx-state
36
36
  drawCigar: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
37
37
  hview: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").IModelType<{
38
38
  id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
39
- displayedRegions: import("mobx-state-tree").IArrayType<import("mobx-state-tree").IModelType<{
40
- refName: import("mobx-state-tree").ISimpleType<string>;
41
- start: import("mobx-state-tree").ISimpleType<number>;
42
- end: import("mobx-state-tree").ISimpleType<number>;
43
- reversed: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<boolean>, [undefined]>;
44
- } & {
45
- assemblyName: import("mobx-state-tree").ISimpleType<string>;
46
- }, {
47
- setRefName(newRefName: string): void;
48
- }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
39
+ displayedRegions: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").IType<import("@jbrowse/core/util").Region[], import("@jbrowse/core/util").Region[], import("@jbrowse/core/util").Region[]>, [undefined]>;
49
40
  bpPerPx: import("mobx-state-tree").IType<number | undefined, number, number>;
50
41
  offsetPx: import("mobx-state-tree").IType<number | undefined, number, number>;
51
42
  interRegionPaddingWidth: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<number>, [undefined]>;
@@ -63,12 +54,7 @@ export default function stateModelFactory(pm: PluginManager): import("mobx-state
63
54
  readonly displayedRegionsTotalPx: number;
64
55
  readonly maxOffset: number;
65
56
  readonly minOffset: number;
66
- readonly totalBp: number; /**
67
- * #stateModel DotplotView
68
- * #category view
69
- * extends
70
- * - [BaseViewModel](../baseviewmodel)
71
- */
57
+ readonly totalBp: number;
72
58
  } & {
73
59
  readonly dynamicBlocks: import("@jbrowse/core/util/blockTypes").BlockSet;
74
60
  readonly staticBlocks: import("@jbrowse/core/util/blockTypes").BlockSet;
@@ -77,15 +63,13 @@ export default function stateModelFactory(pm: PluginManager): import("mobx-state
77
63
  pxToBp(px: number): {
78
64
  coord: number;
79
65
  index: number;
80
- refName: string; /**
81
- * #property
82
- */
66
+ refName: string;
83
67
  oob: boolean;
84
68
  assemblyName: string;
85
69
  offset: number;
86
70
  start: number;
87
71
  end: number;
88
- reversed: boolean;
72
+ reversed?: boolean | undefined;
89
73
  };
90
74
  bpToPx({ refName, coord, regionNumber, }: {
91
75
  refName: string;
@@ -93,12 +77,14 @@ export default function stateModelFactory(pm: PluginManager): import("mobx-state
93
77
  regionNumber?: number | undefined;
94
78
  }): number | undefined;
95
79
  } & {
96
- setFeatures(features: import("@jbrowse/core/util").Feature[]): void;
80
+ setFeatures(features: import("@jbrowse/core/util").Feature[]): void; /**
81
+ * #property
82
+ */
97
83
  showAllRegions(): void;
98
- zoomOut(): void; /**
84
+ zoomOut(): void;
85
+ zoomIn(): void; /**
99
86
  * #property
100
87
  */
101
- zoomIn(): void;
102
88
  zoomTo(bpPerPx: number, offset?: number | undefined): number;
103
89
  scrollTo(offsetPx: number): number;
104
90
  centerAt(coord: number, refName: string | undefined, regionNumber: number): void;
@@ -120,16 +106,7 @@ export default function stateModelFactory(pm: PluginManager): import("mobx-state
120
106
  }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>, [undefined]>;
121
107
  vview: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").IModelType<{
122
108
  id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
123
- displayedRegions: import("mobx-state-tree").IArrayType<import("mobx-state-tree").IModelType<{
124
- refName: import("mobx-state-tree").ISimpleType<string>;
125
- start: import("mobx-state-tree").ISimpleType<number>;
126
- end: import("mobx-state-tree").ISimpleType<number>;
127
- reversed: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<boolean>, [undefined]>;
128
- } & {
129
- assemblyName: import("mobx-state-tree").ISimpleType<string>;
130
- }, {
131
- setRefName(newRefName: string): void;
132
- }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
109
+ displayedRegions: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").IType<import("@jbrowse/core/util").Region[], import("@jbrowse/core/util").Region[], import("@jbrowse/core/util").Region[]>, [undefined]>;
133
110
  bpPerPx: import("mobx-state-tree").IType<number | undefined, number, number>;
134
111
  offsetPx: import("mobx-state-tree").IType<number | undefined, number, number>;
135
112
  interRegionPaddingWidth: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<number>, [undefined]>;
@@ -147,12 +124,7 @@ export default function stateModelFactory(pm: PluginManager): import("mobx-state
147
124
  readonly displayedRegionsTotalPx: number;
148
125
  readonly maxOffset: number;
149
126
  readonly minOffset: number;
150
- readonly totalBp: number; /**
151
- * #stateModel DotplotView
152
- * #category view
153
- * extends
154
- * - [BaseViewModel](../baseviewmodel)
155
- */
127
+ readonly totalBp: number;
156
128
  } & {
157
129
  readonly dynamicBlocks: import("@jbrowse/core/util/blockTypes").BlockSet;
158
130
  readonly staticBlocks: import("@jbrowse/core/util/blockTypes").BlockSet;
@@ -161,15 +133,13 @@ export default function stateModelFactory(pm: PluginManager): import("mobx-state
161
133
  pxToBp(px: number): {
162
134
  coord: number;
163
135
  index: number;
164
- refName: string; /**
165
- * #property
166
- */
136
+ refName: string;
167
137
  oob: boolean;
168
138
  assemblyName: string;
169
139
  offset: number;
170
140
  start: number;
171
141
  end: number;
172
- reversed: boolean;
142
+ reversed?: boolean | undefined;
173
143
  };
174
144
  bpToPx({ refName, coord, regionNumber, }: {
175
145
  refName: string;
@@ -177,12 +147,14 @@ export default function stateModelFactory(pm: PluginManager): import("mobx-state
177
147
  regionNumber?: number | undefined;
178
148
  }): number | undefined;
179
149
  } & {
180
- setFeatures(features: import("@jbrowse/core/util").Feature[]): void;
150
+ setFeatures(features: import("@jbrowse/core/util").Feature[]): void; /**
151
+ * #property
152
+ */
181
153
  showAllRegions(): void;
182
- zoomOut(): void; /**
154
+ zoomOut(): void;
155
+ zoomIn(): void; /**
183
156
  * #property
184
157
  */
185
- zoomIn(): void;
186
158
  zoomTo(bpPerPx: number, offset?: number | undefined): number;
187
159
  scrollTo(offsetPx: number): number;
188
160
  centerAt(coord: number, refName: string | undefined, regionNumber: number): void;
@@ -307,25 +279,7 @@ export default function stateModelFactory(pm: PluginManager): import("mobx-state
307
279
  */
308
280
  readonly views: ({
309
281
  id: string;
310
- displayedRegions: import("mobx-state-tree").IMSTArray<import("mobx-state-tree").IModelType<{
311
- refName: import("mobx-state-tree").ISimpleType<string>;
312
- start: import("mobx-state-tree").ISimpleType<number>;
313
- end: import("mobx-state-tree").ISimpleType<number>;
314
- reversed: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<boolean>, [undefined]>;
315
- } & {
316
- assemblyName: import("mobx-state-tree").ISimpleType<string>;
317
- }, {
318
- setRefName(newRefName: string): void;
319
- }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>> & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IArrayType<import("mobx-state-tree").IModelType<{
320
- refName: import("mobx-state-tree").ISimpleType<string>;
321
- start: import("mobx-state-tree").ISimpleType<number>;
322
- end: import("mobx-state-tree").ISimpleType<number>;
323
- reversed: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<boolean>, [undefined]>;
324
- } & {
325
- assemblyName: import("mobx-state-tree").ISimpleType<string>;
326
- }, {
327
- setRefName(newRefName: string): void;
328
- }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>>;
282
+ displayedRegions: import("@jbrowse/core/util").Region[] & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").IType<import("@jbrowse/core/util").Region[], import("@jbrowse/core/util").Region[], import("@jbrowse/core/util").Region[]>, [undefined]>>;
329
283
  bpPerPx: number;
330
284
  offsetPx: number;
331
285
  interRegionPaddingWidth: number;
@@ -343,12 +297,7 @@ export default function stateModelFactory(pm: PluginManager): import("mobx-state
343
297
  readonly displayedRegionsTotalPx: number;
344
298
  readonly maxOffset: number;
345
299
  readonly minOffset: number;
346
- readonly totalBp: number; /**
347
- * #stateModel DotplotView
348
- * #category view
349
- * extends
350
- * - [BaseViewModel](../baseviewmodel)
351
- */
300
+ readonly totalBp: number;
352
301
  } & {
353
302
  readonly dynamicBlocks: import("@jbrowse/core/util/blockTypes").BlockSet;
354
303
  readonly staticBlocks: import("@jbrowse/core/util/blockTypes").BlockSet;
@@ -357,15 +306,13 @@ export default function stateModelFactory(pm: PluginManager): import("mobx-state
357
306
  pxToBp(px: number): {
358
307
  coord: number;
359
308
  index: number;
360
- refName: string; /**
361
- * #property
362
- */
309
+ refName: string;
363
310
  oob: boolean;
364
311
  assemblyName: string;
365
312
  offset: number;
366
313
  start: number;
367
314
  end: number;
368
- reversed: boolean;
315
+ reversed?: boolean | undefined;
369
316
  };
370
317
  bpToPx({ refName, coord, regionNumber, }: {
371
318
  refName: string;
@@ -373,12 +320,14 @@ export default function stateModelFactory(pm: PluginManager): import("mobx-state
373
320
  regionNumber?: number | undefined;
374
321
  }): number | undefined;
375
322
  } & {
376
- setFeatures(features: import("@jbrowse/core/util").Feature[]): void;
323
+ setFeatures(features: import("@jbrowse/core/util").Feature[]): void; /**
324
+ * #property
325
+ */
377
326
  showAllRegions(): void;
378
- zoomOut(): void; /**
327
+ zoomOut(): void;
328
+ zoomIn(): void; /**
379
329
  * #property
380
330
  */
381
- zoomIn(): void;
382
331
  zoomTo(bpPerPx: number, offset?: number | undefined): number;
383
332
  scrollTo(offsetPx: number): number;
384
333
  centerAt(coord: number, refName: string | undefined, regionNumber: number): void;
@@ -399,16 +348,7 @@ export default function stateModelFactory(pm: PluginManager): import("mobx-state
399
348
  readonly width: any;
400
349
  } & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").IModelType<{
401
350
  id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
402
- displayedRegions: import("mobx-state-tree").IArrayType<import("mobx-state-tree").IModelType<{
403
- refName: import("mobx-state-tree").ISimpleType<string>;
404
- start: import("mobx-state-tree").ISimpleType<number>;
405
- end: import("mobx-state-tree").ISimpleType<number>;
406
- reversed: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<boolean>, [undefined]>;
407
- } & {
408
- assemblyName: import("mobx-state-tree").ISimpleType<string>;
409
- }, {
410
- setRefName(newRefName: string): void;
411
- }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
351
+ displayedRegions: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").IType<import("@jbrowse/core/util").Region[], import("@jbrowse/core/util").Region[], import("@jbrowse/core/util").Region[]>, [undefined]>;
412
352
  bpPerPx: import("mobx-state-tree").IType<number | undefined, number, number>;
413
353
  offsetPx: import("mobx-state-tree").IType<number | undefined, number, number>;
414
354
  interRegionPaddingWidth: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<number>, [undefined]>;
@@ -426,12 +366,7 @@ export default function stateModelFactory(pm: PluginManager): import("mobx-state
426
366
  readonly displayedRegionsTotalPx: number;
427
367
  readonly maxOffset: number;
428
368
  readonly minOffset: number;
429
- readonly totalBp: number; /**
430
- * #stateModel DotplotView
431
- * #category view
432
- * extends
433
- * - [BaseViewModel](../baseviewmodel)
434
- */
369
+ readonly totalBp: number;
435
370
  } & {
436
371
  readonly dynamicBlocks: import("@jbrowse/core/util/blockTypes").BlockSet;
437
372
  readonly staticBlocks: import("@jbrowse/core/util/blockTypes").BlockSet;
@@ -440,15 +375,13 @@ export default function stateModelFactory(pm: PluginManager): import("mobx-state
440
375
  pxToBp(px: number): {
441
376
  coord: number;
442
377
  index: number;
443
- refName: string; /**
444
- * #property
445
- */
378
+ refName: string;
446
379
  oob: boolean;
447
380
  assemblyName: string;
448
381
  offset: number;
449
382
  start: number;
450
383
  end: number;
451
- reversed: boolean;
384
+ reversed?: boolean | undefined;
452
385
  };
453
386
  bpToPx({ refName, coord, regionNumber, }: {
454
387
  refName: string;
@@ -456,12 +389,14 @@ export default function stateModelFactory(pm: PluginManager): import("mobx-state
456
389
  regionNumber?: number | undefined;
457
390
  }): number | undefined;
458
391
  } & {
459
- setFeatures(features: import("@jbrowse/core/util").Feature[]): void;
392
+ setFeatures(features: import("@jbrowse/core/util").Feature[]): void; /**
393
+ * #property
394
+ */
460
395
  showAllRegions(): void;
461
- zoomOut(): void; /**
396
+ zoomOut(): void;
397
+ zoomIn(): void; /**
462
398
  * #property
463
399
  */
464
- zoomIn(): void;
465
400
  zoomTo(bpPerPx: number, offset?: number | undefined): number;
466
401
  scrollTo(offsetPx: number): number;
467
402
  centerAt(coord: number, refName: string | undefined, regionNumber: number): void;
@@ -571,15 +506,13 @@ export default function stateModelFactory(pm: PluginManager): import("mobx-state
571
506
  getCoords(mousedown: Coord, mouseup: Coord): {
572
507
  coord: number;
573
508
  index: number;
574
- refName: string; /**
575
- * #property
576
- */
509
+ refName: string;
577
510
  oob: boolean;
578
511
  assemblyName: string;
579
512
  offset: number;
580
513
  start: number;
581
514
  end: number;
582
- reversed: boolean;
515
+ reversed?: boolean | undefined;
583
516
  }[] | undefined;
584
517
  /**
585
518
  * #action
package/package.json CHANGED
@@ -1,6 +1,6 @@
1
1
  {
2
2
  "name": "@jbrowse/plugin-dotplot-view",
3
- "version": "2.11.2",
3
+ "version": "2.12.0",
4
4
  "description": "JBrowse 2 dotplot view",
5
5
  "keywords": [
6
6
  "jbrowse",
@@ -40,10 +40,8 @@
40
40
  "@mui/icons-material": "^5.0.1",
41
41
  "@mui/x-data-grid": "^7.0.0",
42
42
  "@types/file-saver": "^2.0.1",
43
- "@types/normalize-wheel": "^1.0.0",
44
43
  "clone": "^2.1.2",
45
- "file-saver": "^2.0.0",
46
- "normalize-wheel": "^1.0.1"
44
+ "file-saver": "^2.0.0"
47
45
  },
48
46
  "peerDependencies": {
49
47
  "@jbrowse/core": "^2.0.0",
@@ -63,5 +61,5 @@
63
61
  "publishConfig": {
64
62
  "access": "public"
65
63
  },
66
- "gitHead": "511048cb6965f0bf624c96de244e7fd47fce17d6"
64
+ "gitHead": "935f2602d29abc737bb1f493a922b6218d023ae2"
67
65
  }