@jbrowse/plugin-data-management 4.0.4 → 4.1.3

package/esm/AddTrackWidget/components/ConfirmTrack.js

@@ -25,9 +25,9 @@ const useStyles = makeStyles()(theme => ({
 const ConfirmTrack = observer(function ConfirmTrack({ model, }) {
     const { classes } = useStyles();
     const session = getSession(model);
-    const { trackName, unsupported, trackAdapter, trackType, warningMessage, adapterHint, textIndexTrack, } = model;
+    const { trackName, unsupported, trackAdapter, trackType, warningMessage, adapterHint, textIndexTrack, adapterHintNotConfigurable, } = model;
     useEffect(() => {
-        if (adapterHint === '' && trackAdapter) {
+        if (adapterHint === '' && trackAdapter && trackAdapter.type !== UNKNOWN) {
             model.setAdapterHint(trackAdapter.type);
         }
     }, [adapterHint, trackAdapter, model]);
@@ -37,6 +37,9 @@ const ConfirmTrack = observer(function ConfirmTrack({ model, }) {
     else if (trackAdapter?.type === UNKNOWN) {
         return _jsx(UnknownAdapterPrompt, { model: model });
     }
+    else if (adapterHintNotConfigurable) {
+        return (_jsxs(Typography, { color: "error", children: ["The \"", adapterHint, "\" adapter cannot be configured for the provided file. This adapter may require a specific file extension or format. Please check the file or select a different adapter."] }));
+    }
     else if (!trackAdapter?.type) {
         return _jsx(Typography, { children: "Could not recognize this data type." });
     }

package/esm/AddTrackWidget/components/TrackAdapterSelector.js

@@ -4,9 +4,13 @@ import { ListSubheader, MenuItem, TextField } from '@mui/material';
 import { observer } from 'mobx-react';
 import { categorizeAdapters } from "./util.js";
 const TrackAdapterSelector = observer(function ({ model, }) {
-    const { trackAdapter } = model;
+    const { trackAdapter, adapterHintNotConfigurable } = model;
+    const { adapterHint } = model;
     const { pluginManager } = getEnv(model);
-    return (_jsx(TextField, { value: trackAdapter?.type !== 'UNKNOWN' ? trackAdapter?.type : '', label: "Adapter type", variant: "outlined", select: true, fullWidth: true, onChange: event => {
+    const displayValue = adapterHint || (trackAdapter?.type !== 'UNKNOWN' ? trackAdapter?.type : '');
+    return (_jsx(TextField, { value: displayValue, label: "Adapter type", variant: "outlined", select: true, fullWidth: true, error: adapterHintNotConfigurable, helperText: adapterHintNotConfigurable
+            ? `The "${adapterHint}" adapter cannot be configured for the provided file. This adapter may require a specific file extension or additional setup.`
+            : undefined, onChange: event => {
             model.setAdapterHint(event.target.value);
         }, slotProps: {
             select: {

package/esm/AddTrackWidget/components/TrackSourceSelect.js

@@ -15,6 +15,6 @@ const useStyles = makeStyles()(theme => ({
 const TrackSourceSelect = observer(function TrackSourceSelect({ model, }) {
     const { classes } = useStyles();
     const rootModel = getRoot(model);
-    return (_jsxs(Paper, { className: classes.paper, children: [_jsx(FileSelector, { name: "Main file", description: "", location: model.trackData, setLocation: model.setTrackData, setName: model.setTrackName, rootModel: rootModel }), _jsx("div", { className: classes.spacer }), _jsx(FileSelector, { name: "Index file", description: "(Optional) The URL of the index file is automatically inferred from the URL of the main file if it is not supplied.", location: model.indexTrackData, setLocation: model.setIndexTrackData, rootModel: rootModel })] }));
+    return (_jsxs(Paper, { className: classes.paper, children: [_jsx(FileSelector, { name: "Main file", description: "", location: model.trackData, setLocation: model.setTrackData, rootModel: rootModel }), _jsx("div", { className: classes.spacer }), _jsx(FileSelector, { name: "Index file", description: "(Optional) The URL of the index file is automatically inferred from the URL of the main file if it is not supplied.", location: model.indexTrackData, setLocation: model.setIndexTrackData, rootModel: rootModel })] }));
 });
 export default TrackSourceSelect;

package/esm/AddTrackWidget/model.d.ts

@@ -41,6 +41,7 @@ export default function f(pluginManager: PluginManager): import("@jbrowse/mobx-s
     readonly indexHttp: boolean | undefined;
     readonly wrongProtocol: boolean | undefined;
     readonly unsupported: boolean;
+    readonly adapterHintNotConfigurable: boolean;
     readonly assembly: any;
     readonly trackAdapterType: string | undefined;
     readonly trackType: string;

package/esm/AddTrackWidget/model.js

@@ -116,6 +116,14 @@ export default function f(pluginManager) {
         get unsupported() {
             return this.trackAdapter?.type === UNSUPPORTED;
         },
+        get adapterHintNotConfigurable() {
+            const { adapterHint } = self;
+            const adapterType = this.trackAdapter?.type;
+            return !!(adapterHint &&
+                (!adapterType ||
+                    adapterType === 'UNKNOWN' ||
+                    adapterType !== adapterHint));
+        },
         get assembly() {
             return self.altAssemblyName || self.view?.assemblyNames?.[0];
         },

package/package.json

@@ -1,6 +1,7 @@
 {
   "name": "@jbrowse/plugin-data-management",
-  "version": "4.0.4",
+  "version": "4.1.3",
+  "type": "module",
   "description": "JBrowse 2 linear genome view",
   "keywords": [
     "jbrowse",
@@ -22,15 +23,15 @@
   "dependencies": {
     "@gmod/ucsc-hub": "^2.0.3",
     "@jbrowse/mobx-state-tree": "^5.5.0",
-    "@mui/icons-material": "^7.3.6",
-    "@mui/material": "^7.3.6",
-    "@mui/x-data-grid": "^8.25.0",
+    "@mui/icons-material": "^7.3.7",
+    "@mui/material": "^7.3.7",
+    "@mui/x-data-grid": "^8.26.0",
     "deepmerge": "^4.3.1",
     "mobx": "^6.15.0",
     "mobx-react": "^9.2.1",
-    "@jbrowse/product-core": "^4.0.4",
-    "@jbrowse/core": "^4.0.4",
-    "@jbrowse/plugin-config": "^4.0.4"
+    "@jbrowse/core": "^4.1.3",
+    "@jbrowse/plugin-config": "^4.1.3",
+    "@jbrowse/product-core": "^4.1.3"
   },
   "peerDependencies": {
     "react": ">=18.0.0"