@jbrowse/plugin-data-management 3.6.5 → 4.0.0

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (300) hide show
  1. package/esm/AddConnectionWidget/components/AddConnectionWidget.d.ts +1 -1
  2. package/esm/AddConnectionWidget/components/AddConnectionWidget.js +5 -5
  3. package/esm/AddConnectionWidget/components/ConfigureConnection.js +1 -1
  4. package/esm/AddConnectionWidget/index.js +2 -2
  5. package/esm/AddConnectionWidget/model.d.ts +4 -4
  6. package/esm/AddConnectionWidget/model.js +1 -1
  7. package/esm/AddTrackWidget/components/AddTrackStatusMessage.js +2 -2
  8. package/esm/AddTrackWidget/components/AddTrackUnknownAdapterPrompt.d.ts +1 -1
  9. package/esm/AddTrackWidget/components/AddTrackUnknownAdapterPrompt.js +2 -2
  10. package/esm/AddTrackWidget/components/AddTrackWidget.d.ts +1 -1
  11. package/esm/AddTrackWidget/components/AddTrackWidget.js +3 -3
  12. package/esm/AddTrackWidget/components/ConfirmTrack.d.ts +1 -1
  13. package/esm/AddTrackWidget/components/ConfirmTrack.js +10 -10
  14. package/esm/AddTrackWidget/components/DefaultAddTrackWorkflow.d.ts +1 -1
  15. package/esm/AddTrackWidget/components/DefaultAddTrackWorkflow.js +6 -9
  16. package/esm/AddTrackWidget/components/PasteConfigWorkflow.d.ts +2 -2
  17. package/esm/AddTrackWidget/components/PasteConfigWorkflow.js +2 -2
  18. package/esm/AddTrackWidget/components/TextIndexingConfig.d.ts +1 -1
  19. package/esm/AddTrackWidget/components/TextIndexingConfig.js +2 -2
  20. package/esm/AddTrackWidget/components/TrackAdapterSelector.d.ts +2 -2
  21. package/esm/AddTrackWidget/components/TrackAdapterSelector.js +4 -4
  22. package/esm/AddTrackWidget/components/TrackSourceSelect.d.ts +1 -1
  23. package/esm/AddTrackWidget/components/TrackSourceSelect.js +3 -3
  24. package/esm/AddTrackWidget/components/TrackTypeSelector.d.ts +1 -1
  25. package/esm/AddTrackWidget/components/TrackTypeSelector.js +1 -1
  26. package/esm/AddTrackWidget/components/Unsupported.js +1 -1
  27. package/esm/AddTrackWidget/components/doSubmit.d.ts +1 -1
  28. package/esm/AddTrackWidget/components/doSubmit.js +2 -3
  29. package/esm/AddTrackWidget/components/util.js +1 -2
  30. package/esm/AddTrackWidget/index.js +2 -2
  31. package/esm/AddTrackWidget/model.d.ts +8 -11
  32. package/esm/AddTrackWidget/model.js +10 -25
  33. package/esm/AssemblyManager/AssemblyAddForm.js +11 -27
  34. package/esm/AssemblyManager/AssemblyEditor.js +2 -2
  35. package/esm/AssemblyManager/AssemblyManager.js +4 -4
  36. package/esm/AssemblyManager/AssemblyTable.js +1 -1
  37. package/esm/AssemblyManager/index.d.ts +1 -1
  38. package/esm/AssemblyManager/index.js +1 -1
  39. package/esm/HierarchicalTrackSelectorWidget/components/AutoSizer.d.ts +8 -0
  40. package/esm/HierarchicalTrackSelectorWidget/components/AutoSizer.js +24 -0
  41. package/esm/HierarchicalTrackSelectorWidget/components/ClearableSearchField.d.ts +6 -0
  42. package/esm/HierarchicalTrackSelectorWidget/components/ClearableSearchField.js +27 -0
  43. package/esm/HierarchicalTrackSelectorWidget/components/HierarchicalFab.d.ts +1 -1
  44. package/esm/HierarchicalTrackSelectorWidget/components/HierarchicalFab.js +2 -2
  45. package/esm/HierarchicalTrackSelectorWidget/components/HierarchicalTrackSelector.d.ts +1 -1
  46. package/esm/HierarchicalTrackSelectorWidget/components/HierarchicalTrackSelector.js +9 -9
  47. package/esm/HierarchicalTrackSelectorWidget/components/ShoppingCart.js +4 -5
  48. package/esm/HierarchicalTrackSelectorWidget/components/dialogs/CloseConnectionDialog.js +1 -1
  49. package/esm/HierarchicalTrackSelectorWidget/components/dialogs/DeleteConnectionDialog.js +1 -2
  50. package/esm/HierarchicalTrackSelectorWidget/components/dialogs/ManageConnectionsDialog.js +3 -3
  51. package/esm/HierarchicalTrackSelectorWidget/components/dialogs/ToggleConnectionsDialog.js +4 -5
  52. package/esm/HierarchicalTrackSelectorWidget/components/faceted/FacetFilter.d.ts +1 -1
  53. package/esm/HierarchicalTrackSelectorWidget/components/faceted/FacetFilter.js +2 -2
  54. package/esm/HierarchicalTrackSelectorWidget/components/faceted/FacetFilters.d.ts +2 -2
  55. package/esm/HierarchicalTrackSelectorWidget/components/faceted/FacetFilters.js +5 -6
  56. package/esm/HierarchicalTrackSelectorWidget/components/faceted/FacetedDataGrid.d.ts +1 -1
  57. package/esm/HierarchicalTrackSelectorWidget/components/faceted/FacetedDataGrid.js +39 -58
  58. package/esm/HierarchicalTrackSelectorWidget/components/faceted/FacetedDialog.d.ts +1 -1
  59. package/esm/HierarchicalTrackSelectorWidget/components/faceted/FacetedDialog.js +2 -2
  60. package/esm/HierarchicalTrackSelectorWidget/components/faceted/FacetedHeader.d.ts +1 -1
  61. package/esm/HierarchicalTrackSelectorWidget/components/faceted/FacetedHeader.js +6 -12
  62. package/esm/HierarchicalTrackSelectorWidget/components/faceted/FacetedSelector.d.ts +1 -1
  63. package/esm/HierarchicalTrackSelectorWidget/components/faceted/FacetedSelector.js +7 -7
  64. package/esm/HierarchicalTrackSelectorWidget/components/faceted/computeInitialWidths.d.ts +6 -0
  65. package/esm/HierarchicalTrackSelectorWidget/components/faceted/computeInitialWidths.js +18 -0
  66. package/esm/HierarchicalTrackSelectorWidget/components/faceted/util.js +1 -2
  67. package/esm/HierarchicalTrackSelectorWidget/components/tree/DropdownTrackSelector.d.ts +1 -1
  68. package/esm/HierarchicalTrackSelectorWidget/components/tree/DropdownTrackSelector.js +3 -3
  69. package/esm/HierarchicalTrackSelectorWidget/components/tree/FavoriteTracks.d.ts +1 -1
  70. package/esm/HierarchicalTrackSelectorWidget/components/tree/FavoriteTracks.js +13 -32
  71. package/esm/HierarchicalTrackSelectorWidget/components/tree/HamburgerMenu.d.ts +1 -1
  72. package/esm/HierarchicalTrackSelectorWidget/components/tree/HamburgerMenu.js +7 -8
  73. package/esm/HierarchicalTrackSelectorWidget/components/tree/HierarchicalHeader.d.ts +1 -1
  74. package/esm/HierarchicalTrackSelectorWidget/components/tree/HierarchicalHeader.js +11 -22
  75. package/esm/HierarchicalTrackSelectorWidget/components/tree/HierarchicalTree.d.ts +2 -4
  76. package/esm/HierarchicalTrackSelectorWidget/components/tree/HierarchicalTree.js +42 -59
  77. package/esm/HierarchicalTrackSelectorWidget/components/tree/RecentlyUsedTracks.d.ts +1 -1
  78. package/esm/HierarchicalTrackSelectorWidget/components/tree/RecentlyUsedTracks.js +13 -29
  79. package/esm/HierarchicalTrackSelectorWidget/components/tree/TrackCategory.d.ts +7 -6
  80. package/esm/HierarchicalTrackSelectorWidget/components/tree/TrackCategory.js +81 -51
  81. package/esm/HierarchicalTrackSelectorWidget/components/tree/TrackLabel.d.ts +8 -4
  82. package/esm/HierarchicalTrackSelectorWidget/components/tree/TrackLabel.js +28 -15
  83. package/{dist/HierarchicalTrackSelectorWidget/components/tree/TrackLabelMenu.d.ts → esm/HierarchicalTrackSelectorWidget/components/tree/TrackSelectorTrackMenu.d.ts} +3 -4
  84. package/esm/HierarchicalTrackSelectorWidget/components/tree/{TrackLabelMenu.js → TrackSelectorTrackMenu.js} +13 -7
  85. package/esm/HierarchicalTrackSelectorWidget/components/tree/TreeItem.d.ts +9 -0
  86. package/esm/HierarchicalTrackSelectorWidget/components/tree/TreeItem.js +49 -0
  87. package/esm/HierarchicalTrackSelectorWidget/components/tree/trackListStyles.d.ts +21 -0
  88. package/esm/HierarchicalTrackSelectorWidget/components/tree/trackListStyles.js +29 -0
  89. package/esm/HierarchicalTrackSelectorWidget/components/util.d.ts +1 -20
  90. package/esm/HierarchicalTrackSelectorWidget/components/util.js +1 -10
  91. package/esm/HierarchicalTrackSelectorWidget/configSchema.d.ts +1 -1
  92. package/esm/HierarchicalTrackSelectorWidget/facetedModel.d.ts +24 -30
  93. package/esm/HierarchicalTrackSelectorWidget/facetedModel.js +34 -23
  94. package/esm/HierarchicalTrackSelectorWidget/facetedUtil.js +2 -2
  95. package/esm/HierarchicalTrackSelectorWidget/filterTracks.d.ts +3 -7
  96. package/esm/HierarchicalTrackSelectorWidget/filterTracks.js +13 -11
  97. package/esm/HierarchicalTrackSelectorWidget/generateHierarchy.d.ts +2 -28
  98. package/esm/HierarchicalTrackSelectorWidget/generateHierarchy.js +34 -59
  99. package/esm/HierarchicalTrackSelectorWidget/index.d.ts +2 -2
  100. package/esm/HierarchicalTrackSelectorWidget/index.js +5 -5
  101. package/esm/HierarchicalTrackSelectorWidget/model.d.ts +67 -87
  102. package/esm/HierarchicalTrackSelectorWidget/model.js +91 -24
  103. package/esm/HierarchicalTrackSelectorWidget/sortUtils.d.ts +2 -0
  104. package/esm/HierarchicalTrackSelectorWidget/sortUtils.js +28 -0
  105. package/esm/HierarchicalTrackSelectorWidget/types.d.ts +23 -0
  106. package/esm/HierarchicalTrackSelectorWidget/types.js +1 -0
  107. package/esm/HierarchicalTrackSelectorWidget/util.js +1 -1
  108. package/esm/JB2TrackHubConnection/configSchema.d.ts +3 -3
  109. package/esm/JB2TrackHubConnection/doConnect.js +3 -4
  110. package/esm/JB2TrackHubConnection/index.js +2 -2
  111. package/esm/JB2TrackHubConnection/model.d.ts +18 -26
  112. package/esm/JB2TrackHubConnection/model.js +3 -3
  113. package/esm/PluginStoreWidget/components/AddCustomPluginDialog.d.ts +1 -1
  114. package/esm/PluginStoreWidget/components/AddCustomPluginDialog.js +3 -3
  115. package/esm/PluginStoreWidget/components/InstalledPlugin.d.ts +1 -1
  116. package/esm/PluginStoreWidget/components/InstalledPlugin.js +5 -5
  117. package/esm/PluginStoreWidget/components/InstalledPluginsList.d.ts +1 -1
  118. package/esm/PluginStoreWidget/components/InstalledPluginsList.js +2 -2
  119. package/esm/PluginStoreWidget/components/PluginCard.d.ts +1 -1
  120. package/esm/PluginStoreWidget/components/PluginCard.js +1 -5
  121. package/esm/PluginStoreWidget/components/PluginStoreWidget.d.ts +1 -1
  122. package/esm/PluginStoreWidget/components/PluginStoreWidget.js +22 -10
  123. package/esm/PluginStoreWidget/components/util.js +1 -1
  124. package/esm/PluginStoreWidget/index.js +2 -2
  125. package/esm/PluginStoreWidget/model.d.ts +7 -7
  126. package/esm/PluginStoreWidget/model.js +1 -1
  127. package/esm/UCSCTrackHubConnection/configSchema.d.ts +3 -3
  128. package/esm/UCSCTrackHubConnection/doConnect.js +3 -9
  129. package/esm/UCSCTrackHubConnection/index.js +2 -2
  130. package/esm/UCSCTrackHubConnection/model.d.ts +18 -26
  131. package/esm/UCSCTrackHubConnection/model.js +3 -3
  132. package/esm/UCSCTrackHubConnection/ucscTrackHub.d.ts +1 -8
  133. package/esm/UCSCTrackHubConnection/ucscTrackHub.js +6 -10
  134. package/esm/index.d.ts +2 -2
  135. package/esm/index.js +11 -14
  136. package/package.json +28 -37
  137. package/dist/AddConnectionWidget/components/AddConnectionWidget.d.ts +0 -4
  138. package/dist/AddConnectionWidget/components/AddConnectionWidget.js +0 -66
  139. package/dist/AddConnectionWidget/components/ConfigureConnection.d.ts +0 -9
  140. package/dist/AddConnectionWidget/components/ConfigureConnection.js +0 -12
  141. package/dist/AddConnectionWidget/components/ConnectionTypeSelect.d.ts +0 -7
  142. package/dist/AddConnectionWidget/components/ConnectionTypeSelect.js +0 -19
  143. package/dist/AddConnectionWidget/index.d.ts +0 -2
  144. package/dist/AddConnectionWidget/index.js +0 -55
  145. package/dist/AddConnectionWidget/model.d.ts +0 -5
  146. package/dist/AddConnectionWidget/model.js +0 -8
  147. package/dist/AddTrackWidget/components/AddTrackStatusMessage.d.ts +0 -9
  148. package/dist/AddTrackWidget/components/AddTrackStatusMessage.js +0 -16
  149. package/dist/AddTrackWidget/components/AddTrackUnknownAdapterPrompt.d.ts +0 -4
  150. package/dist/AddTrackWidget/components/AddTrackUnknownAdapterPrompt.js +0 -20
  151. package/dist/AddTrackWidget/components/AddTrackWidget.d.ts +0 -5
  152. package/dist/AddTrackWidget/components/AddTrackWidget.js +0 -28
  153. package/dist/AddTrackWidget/components/ConfirmTrack.d.ts +0 -5
  154. package/dist/AddTrackWidget/components/ConfirmTrack.js +0 -73
  155. package/dist/AddTrackWidget/components/DefaultAddTrackWorkflow.d.ts +0 -5
  156. package/dist/AddTrackWidget/components/DefaultAddTrackWorkflow.js +0 -74
  157. package/dist/AddTrackWidget/components/PasteConfigWorkflow.d.ts +0 -5
  158. package/dist/AddTrackWidget/components/PasteConfigWorkflow.js +0 -53
  159. package/dist/AddTrackWidget/components/TextIndexingConfig.d.ts +0 -5
  160. package/dist/AddTrackWidget/components/TextIndexingConfig.js +0 -76
  161. package/dist/AddTrackWidget/components/TrackAdapterSelector.d.ts +0 -5
  162. package/dist/AddTrackWidget/components/TrackAdapterSelector.js +0 -26
  163. package/dist/AddTrackWidget/components/TrackSourceSelect.d.ts +0 -5
  164. package/dist/AddTrackWidget/components/TrackSourceSelect.js +0 -22
  165. package/dist/AddTrackWidget/components/TrackTypeSelector.d.ts +0 -5
  166. package/dist/AddTrackWidget/components/TrackTypeSelector.js +0 -21
  167. package/dist/AddTrackWidget/components/Unsupported.d.ts +0 -1
  168. package/dist/AddTrackWidget/components/Unsupported.js +0 -16
  169. package/dist/AddTrackWidget/components/doSubmit.d.ts +0 -4
  170. package/dist/AddTrackWidget/components/doSubmit.js +0 -55
  171. package/dist/AddTrackWidget/components/util.d.ts +0 -2
  172. package/dist/AddTrackWidget/components/util.js +0 -15
  173. package/dist/AddTrackWidget/index.d.ts +0 -2
  174. package/dist/AddTrackWidget/index.js +0 -55
  175. package/dist/AddTrackWidget/model.d.ts +0 -64
  176. package/dist/AddTrackWidget/model.js +0 -190
  177. package/dist/AssemblyManager/AssemblyAddForm.d.ts +0 -6
  178. package/dist/AssemblyManager/AssemblyAddForm.js +0 -110
  179. package/dist/AssemblyManager/AssemblyEditor.d.ts +0 -6
  180. package/dist/AssemblyManager/AssemblyEditor.js +0 -20
  181. package/dist/AssemblyManager/AssemblyManager.d.ts +0 -6
  182. package/dist/AssemblyManager/AssemblyManager.js +0 -30
  183. package/dist/AssemblyManager/AssemblyTable.d.ts +0 -9
  184. package/dist/AssemblyManager/AssemblyTable.js +0 -53
  185. package/dist/AssemblyManager/index.d.ts +0 -1
  186. package/dist/AssemblyManager/index.js +0 -8
  187. package/dist/HierarchicalTrackSelectorWidget/components/HierarchicalFab.d.ts +0 -5
  188. package/dist/HierarchicalTrackSelectorWidget/components/HierarchicalFab.js +0 -47
  189. package/dist/HierarchicalTrackSelectorWidget/components/HierarchicalTrackSelector.d.ts +0 -10
  190. package/dist/HierarchicalTrackSelectorWidget/components/HierarchicalTrackSelector.js +0 -26
  191. package/dist/HierarchicalTrackSelectorWidget/components/ShoppingCart.d.ts +0 -8
  192. package/dist/HierarchicalTrackSelectorWidget/components/ShoppingCart.js +0 -52
  193. package/dist/HierarchicalTrackSelectorWidget/components/dialogs/CloseConnectionDialog.d.ts +0 -9
  194. package/dist/HierarchicalTrackSelectorWidget/components/dialogs/CloseConnectionDialog.js +0 -16
  195. package/dist/HierarchicalTrackSelectorWidget/components/dialogs/DeleteConnectionDialog.d.ts +0 -11
  196. package/dist/HierarchicalTrackSelectorWidget/components/dialogs/DeleteConnectionDialog.js +0 -17
  197. package/dist/HierarchicalTrackSelectorWidget/components/dialogs/ManageConnectionsDialog.d.ts +0 -8
  198. package/dist/HierarchicalTrackSelectorWidget/components/dialogs/ManageConnectionsDialog.js +0 -34
  199. package/dist/HierarchicalTrackSelectorWidget/components/dialogs/ToggleConnectionsDialog.d.ts +0 -8
  200. package/dist/HierarchicalTrackSelectorWidget/components/dialogs/ToggleConnectionsDialog.js +0 -47
  201. package/dist/HierarchicalTrackSelectorWidget/components/faceted/FacetFilter.d.ts +0 -9
  202. package/dist/HierarchicalTrackSelectorWidget/components/faceted/FacetFilter.js +0 -52
  203. package/dist/HierarchicalTrackSelectorWidget/components/faceted/FacetFilters.d.ts +0 -10
  204. package/dist/HierarchicalTrackSelectorWidget/components/faceted/FacetFilters.js +0 -51
  205. package/dist/HierarchicalTrackSelectorWidget/components/faceted/FacetedDataGrid.d.ts +0 -9
  206. package/dist/HierarchicalTrackSelectorWidget/components/faceted/FacetedDataGrid.js +0 -75
  207. package/dist/HierarchicalTrackSelectorWidget/components/faceted/FacetedDialog.d.ts +0 -6
  208. package/dist/HierarchicalTrackSelectorWidget/components/faceted/FacetedDialog.js +0 -15
  209. package/dist/HierarchicalTrackSelectorWidget/components/faceted/FacetedHeader.d.ts +0 -4
  210. package/dist/HierarchicalTrackSelectorWidget/components/faceted/FacetedHeader.js +0 -67
  211. package/dist/HierarchicalTrackSelectorWidget/components/faceted/FacetedSelector.d.ts +0 -11
  212. package/dist/HierarchicalTrackSelectorWidget/components/faceted/FacetedSelector.js +0 -75
  213. package/dist/HierarchicalTrackSelectorWidget/components/faceted/util.d.ts +0 -6
  214. package/dist/HierarchicalTrackSelectorWidget/components/faceted/util.js +0 -9
  215. package/dist/HierarchicalTrackSelectorWidget/components/tree/DropdownTrackSelector.d.ts +0 -11
  216. package/dist/HierarchicalTrackSelectorWidget/components/tree/DropdownTrackSelector.js +0 -34
  217. package/dist/HierarchicalTrackSelectorWidget/components/tree/FavoriteTracks.d.ts +0 -5
  218. package/dist/HierarchicalTrackSelectorWidget/components/tree/FavoriteTracks.js +0 -45
  219. package/dist/HierarchicalTrackSelectorWidget/components/tree/HamburgerMenu.d.ts +0 -5
  220. package/dist/HierarchicalTrackSelectorWidget/components/tree/HamburgerMenu.js +0 -196
  221. package/dist/HierarchicalTrackSelectorWidget/components/tree/HierarchicalHeader.d.ts +0 -6
  222. package/dist/HierarchicalTrackSelectorWidget/components/tree/HierarchicalHeader.js +0 -38
  223. package/dist/HierarchicalTrackSelectorWidget/components/tree/HierarchicalTree.d.ts +0 -8
  224. package/dist/HierarchicalTrackSelectorWidget/components/tree/HierarchicalTree.js +0 -68
  225. package/dist/HierarchicalTrackSelectorWidget/components/tree/RecentlyUsedTracks.d.ts +0 -5
  226. package/dist/HierarchicalTrackSelectorWidget/components/tree/RecentlyUsedTracks.js +0 -42
  227. package/dist/HierarchicalTrackSelectorWidget/components/tree/TrackCategory.d.ts +0 -6
  228. package/dist/HierarchicalTrackSelectorWidget/components/tree/TrackCategory.js +0 -81
  229. package/dist/HierarchicalTrackSelectorWidget/components/tree/TrackLabel.d.ts +0 -10
  230. package/dist/HierarchicalTrackSelectorWidget/components/tree/TrackLabel.js +0 -49
  231. package/dist/HierarchicalTrackSelectorWidget/components/tree/TrackLabelMenu.js +0 -56
  232. package/dist/HierarchicalTrackSelectorWidget/components/tree/TrackListNode.d.ts +0 -9
  233. package/dist/HierarchicalTrackSelectorWidget/components/tree/TrackListNode.js +0 -42
  234. package/dist/HierarchicalTrackSelectorWidget/components/util.d.ts +0 -23
  235. package/dist/HierarchicalTrackSelectorWidget/components/util.js +0 -22
  236. package/dist/HierarchicalTrackSelectorWidget/configSchema.d.ts +0 -2
  237. package/dist/HierarchicalTrackSelectorWidget/configSchema.js +0 -5
  238. package/dist/HierarchicalTrackSelectorWidget/facetedModel.d.ts +0 -82
  239. package/dist/HierarchicalTrackSelectorWidget/facetedModel.js +0 -114
  240. package/dist/HierarchicalTrackSelectorWidget/facetedUtil.d.ts +0 -2
  241. package/dist/HierarchicalTrackSelectorWidget/facetedUtil.js +0 -12
  242. package/dist/HierarchicalTrackSelectorWidget/filterTracks.d.ts +0 -18
  243. package/dist/HierarchicalTrackSelectorWidget/filterTracks.js +0 -31
  244. package/dist/HierarchicalTrackSelectorWidget/generateHierarchy.d.ts +0 -36
  245. package/dist/HierarchicalTrackSelectorWidget/generateHierarchy.js +0 -90
  246. package/dist/HierarchicalTrackSelectorWidget/index.d.ts +0 -4
  247. package/dist/HierarchicalTrackSelectorWidget/index.js +0 -59
  248. package/dist/HierarchicalTrackSelectorWidget/model.d.ts +0 -244
  249. package/dist/HierarchicalTrackSelectorWidget/model.js +0 -339
  250. package/dist/HierarchicalTrackSelectorWidget/util.d.ts +0 -12
  251. package/dist/HierarchicalTrackSelectorWidget/util.js +0 -50
  252. package/dist/JB2TrackHubConnection/addRelativeUris.d.ts +0 -1
  253. package/dist/JB2TrackHubConnection/addRelativeUris.js +0 -15
  254. package/dist/JB2TrackHubConnection/configSchema.d.ts +0 -27
  255. package/dist/JB2TrackHubConnection/configSchema.js +0 -34
  256. package/dist/JB2TrackHubConnection/doConnect.d.ts +0 -5
  257. package/dist/JB2TrackHubConnection/doConnect.js +0 -34
  258. package/dist/JB2TrackHubConnection/index.d.ts +0 -2
  259. package/dist/JB2TrackHubConnection/index.js +0 -21
  260. package/dist/JB2TrackHubConnection/model.d.ts +0 -75
  261. package/dist/JB2TrackHubConnection/model.js +0 -56
  262. package/dist/JB2TrackHubConnection/util.d.ts +0 -22
  263. package/dist/JB2TrackHubConnection/util.js +0 -41
  264. package/dist/PluginStoreWidget/components/AddCustomPluginDialog.d.ts +0 -6
  265. package/dist/PluginStoreWidget/components/AddCustomPluginDialog.js +0 -65
  266. package/dist/PluginStoreWidget/components/DeletePluginDialog.d.ts +0 -4
  267. package/dist/PluginStoreWidget/components/DeletePluginDialog.js +0 -17
  268. package/dist/PluginStoreWidget/components/InstalledPlugin.d.ts +0 -7
  269. package/dist/PluginStoreWidget/components/InstalledPlugin.js +0 -92
  270. package/dist/PluginStoreWidget/components/InstalledPluginsList.d.ts +0 -7
  271. package/dist/PluginStoreWidget/components/InstalledPluginsList.js +0 -18
  272. package/dist/PluginStoreWidget/components/PluginCard.d.ts +0 -7
  273. package/dist/PluginStoreWidget/components/PluginCard.js +0 -58
  274. package/dist/PluginStoreWidget/components/PluginStoreWidget.d.ts +0 -5
  275. package/dist/PluginStoreWidget/components/PluginStoreWidget.js +0 -104
  276. package/dist/PluginStoreWidget/components/util.d.ts +0 -6
  277. package/dist/PluginStoreWidget/components/util.js +0 -35
  278. package/dist/PluginStoreWidget/index.d.ts +0 -2
  279. package/dist/PluginStoreWidget/index.js +0 -55
  280. package/dist/PluginStoreWidget/model.d.ts +0 -13
  281. package/dist/PluginStoreWidget/model.js +0 -22
  282. package/dist/UCSCTrackHubConnection/configSchema.d.ts +0 -27
  283. package/dist/UCSCTrackHubConnection/configSchema.js +0 -34
  284. package/dist/UCSCTrackHubConnection/doConnect.d.ts +0 -5
  285. package/dist/UCSCTrackHubConnection/doConnect.js +0 -152
  286. package/dist/UCSCTrackHubConnection/index.d.ts +0 -2
  287. package/dist/UCSCTrackHubConnection/index.js +0 -21
  288. package/dist/UCSCTrackHubConnection/model.d.ts +0 -75
  289. package/dist/UCSCTrackHubConnection/model.js +0 -56
  290. package/dist/UCSCTrackHubConnection/ucscAssemblies.d.ts +0 -2
  291. package/dist/UCSCTrackHubConnection/ucscAssemblies.js +0 -199
  292. package/dist/UCSCTrackHubConnection/ucscTrackHub.d.ts +0 -182
  293. package/dist/UCSCTrackHubConnection/ucscTrackHub.js +0 -162
  294. package/dist/UCSCTrackHubConnection/util.d.ts +0 -22
  295. package/dist/UCSCTrackHubConnection/util.js +0 -41
  296. package/dist/index.d.ts +0 -20
  297. package/dist/index.js +0 -68
  298. package/esm/HierarchicalTrackSelectorWidget/components/tree/TrackLabelMenu.d.ts +0 -11
  299. package/esm/HierarchicalTrackSelectorWidget/components/tree/TrackListNode.d.ts +0 -9
  300. package/esm/HierarchicalTrackSelectorWidget/components/tree/TrackListNode.js +0 -36
@@ -1,75 +0,0 @@
1
- "use strict";
2
- Object.defineProperty(exports, "__esModule", { value: true });
3
- const jsx_runtime_1 = require("react/jsx-runtime");
4
- const react_1 = require("react");
5
- const util_1 = require("@jbrowse/core/util");
6
- const x_data_grid_1 = require("@mui/x-data-grid");
7
- const mobx_1 = require("mobx");
8
- const mobx_react_1 = require("mobx-react");
9
- const mobx_state_tree_1 = require("mobx-state-tree");
10
- const FacetedDataGrid = (0, mobx_react_1.observer)(function ({ model, columns, shownTrackIds, selection, }) {
11
- const { pluginManager } = (0, util_1.getEnv)(model);
12
- const { view, faceted } = model;
13
- const { rows, useShoppingCart, showOptions, filteredRows, filteredNonMetadataKeys, filteredMetadataKeys, visible, } = faceted;
14
- const [widths, setWidths] = (0, react_1.useState)({
15
- name: (0, util_1.measureGridWidth)(rows.map(r => r.name), {
16
- maxWidth: 500,
17
- stripHTML: true,
18
- }) + 15,
19
- ...Object.fromEntries(filteredNonMetadataKeys
20
- .filter(f => visible[f])
21
- .map(e => [
22
- e,
23
- (0, util_1.measureGridWidth)(rows.map(r => r[e]), {
24
- maxWidth: 400,
25
- stripHTML: true,
26
- }),
27
- ])),
28
- ...Object.fromEntries(filteredMetadataKeys
29
- .filter(f => visible[`metadata.${f}`])
30
- .map(e => {
31
- return [
32
- `metadata.${e}`,
33
- (0, util_1.measureGridWidth)(rows.map(r => r.metadata[e]), {
34
- maxWidth: 400,
35
- stripHTML: true,
36
- }),
37
- ];
38
- })),
39
- });
40
- return ((0, jsx_runtime_1.jsx)(x_data_grid_1.DataGrid, { rowHeight: 25, columnHeaderHeight: 35, checkboxSelection: true, disableRowSelectionOnClick: true, keepNonExistentRowsSelected: true, rows: filteredRows, columnVisibilityModel: visible, showToolbar: showOptions, onColumnWidthChange: arg => {
41
- setWidths({
42
- ...widths,
43
- [arg.colDef.field]: arg.width,
44
- });
45
- }, onColumnVisibilityModelChange: n => {
46
- model.faceted.setVisible(n);
47
- }, onRowSelectionModelChange: userSelectedIds => {
48
- if (!useShoppingCart) {
49
- const a1 = shownTrackIds;
50
- const a2 = userSelectedIds.ids;
51
- (0, mobx_1.transaction)(() => {
52
- ;
53
- [...a1].filter(x => !a2.has(x)).map(t => view.hideTrack(t));
54
- [...a2]
55
- .filter(x => !a1.has(x))
56
- .map(t => {
57
- view.showTrack(t);
58
- model.addToRecentlyUsed(t);
59
- });
60
- });
61
- }
62
- else {
63
- const root = (0, mobx_state_tree_1.getRoot)(model);
64
- const schema = pluginManager.pluggableConfigSchemaType('track');
65
- model.setSelection([...userSelectedIds.ids].map(id => (0, mobx_state_tree_1.resolveIdentifier)(schema, root, id)));
66
- }
67
- }, rowSelectionModel: {
68
- type: 'include',
69
- ids: new Set(useShoppingCart ? selection.map(s => s.trackId) : [...shownTrackIds]),
70
- }, columns: columns.map(r => ({
71
- ...r,
72
- width: widths[r.field],
73
- })) }));
74
- });
75
- exports.default = FacetedDataGrid;
@@ -1,6 +0,0 @@
1
- import type { HierarchicalTrackSelectorModel } from '../../model';
2
- declare const FacetedTrackSelectorDialog: (props: {
3
- handleClose: () => void;
4
- model: HierarchicalTrackSelectorModel;
5
- }) => import("react/jsx-runtime").JSX.Element;
6
- export default FacetedTrackSelectorDialog;
@@ -1,15 +0,0 @@
1
- "use strict";
2
- var __importDefault = (this && this.__importDefault) || function (mod) {
3
- return (mod && mod.__esModule) ? mod : { "default": mod };
4
- };
5
- Object.defineProperty(exports, "__esModule", { value: true });
6
- const jsx_runtime_1 = require("react/jsx-runtime");
7
- const ui_1 = require("@jbrowse/core/ui");
8
- const material_1 = require("@mui/material");
9
- const mobx_react_1 = require("mobx-react");
10
- const FacetedSelector_1 = __importDefault(require("./FacetedSelector"));
11
- const FacetedTrackSelectorDialog = (0, mobx_react_1.observer)(function (props) {
12
- const { handleClose } = props;
13
- return ((0, jsx_runtime_1.jsx)(ui_1.Dialog, { open: true, onClose: handleClose, maxWidth: "xl", title: "Faceted track selector", children: (0, jsx_runtime_1.jsx)(material_1.DialogContent, { children: (0, jsx_runtime_1.jsx)(FacetedSelector_1.default, { ...props }) }) }));
14
- });
15
- exports.default = FacetedTrackSelectorDialog;
@@ -1,4 +0,0 @@
1
- import type { HierarchicalTrackSelectorModel } from '../../model';
2
- export default function FacetedHeader({ model, }: {
3
- model: HierarchicalTrackSelectorModel;
4
- }): import("react/jsx-runtime").JSX.Element;
@@ -1,67 +0,0 @@
1
- "use strict";
2
- var __importDefault = (this && this.__importDefault) || function (mod) {
3
- return (mod && mod.__esModule) ? mod : { "default": mod };
4
- };
5
- Object.defineProperty(exports, "__esModule", { value: true });
6
- exports.default = FacetedHeader;
7
- const jsx_runtime_1 = require("react/jsx-runtime");
8
- const react_1 = require("react");
9
- const ui_1 = require("@jbrowse/core/ui");
10
- const Clear_1 = __importDefault(require("@mui/icons-material/Clear"));
11
- const MoreVert_1 = __importDefault(require("@mui/icons-material/MoreVert"));
12
- const material_1 = require("@mui/material");
13
- const ShoppingCart_1 = __importDefault(require("../ShoppingCart"));
14
- function FacetedHeader({ model, }) {
15
- const { faceted } = model;
16
- const [anchorEl, setAnchorEl] = (0, react_1.useState)(null);
17
- const { showOptions, showFilters, showSparse, useShoppingCart } = faceted;
18
- return ((0, jsx_runtime_1.jsxs)(jsx_runtime_1.Fragment, { children: [(0, jsx_runtime_1.jsxs)(material_1.Grid, { container: true, spacing: 4, alignItems: "center", children: [(0, jsx_runtime_1.jsx)(material_1.TextField, { label: "Search...", value: faceted.filterText, onChange: event => {
19
- faceted.setFilterText(event.target.value);
20
- }, slotProps: {
21
- input: {
22
- endAdornment: ((0, jsx_runtime_1.jsx)(material_1.InputAdornment, { position: "end", children: (0, jsx_runtime_1.jsx)(material_1.IconButton, { onClick: () => {
23
- faceted.setFilterText('');
24
- }, children: (0, jsx_runtime_1.jsx)(Clear_1.default, {}) }) })),
25
- },
26
- } }), (0, jsx_runtime_1.jsx)(material_1.IconButton, { onClick: event => {
27
- setAnchorEl(event.currentTarget);
28
- }, children: (0, jsx_runtime_1.jsx)(MoreVert_1.default, {}) }), (0, jsx_runtime_1.jsx)(ShoppingCart_1.default, { model: model })] }), (0, jsx_runtime_1.jsx)(ui_1.Menu, { anchorEl: anchorEl, open: !!anchorEl, onClose: () => {
29
- setAnchorEl(null);
30
- }, onMenuItemClick: (_event, callback) => {
31
- callback();
32
- setAnchorEl(null);
33
- }, menuItems: [
34
- {
35
- label: 'Add tracks to selection instead of turning them on/off',
36
- onClick: () => {
37
- faceted.setUseShoppingCart(!useShoppingCart);
38
- },
39
- type: 'checkbox',
40
- checked: useShoppingCart,
41
- },
42
- {
43
- label: 'Show sparse metadata columns',
44
- onClick: () => {
45
- faceted.setShowSparse(!showSparse);
46
- },
47
- checked: showSparse,
48
- type: 'checkbox',
49
- },
50
- {
51
- label: 'Show facet filters',
52
- onClick: () => {
53
- faceted.setShowFilters(!showFilters);
54
- },
55
- checked: showFilters,
56
- type: 'checkbox',
57
- },
58
- {
59
- label: 'Show extra table options',
60
- onClick: () => {
61
- faceted.setShowOptions(!showOptions);
62
- },
63
- checked: showOptions,
64
- type: 'checkbox',
65
- },
66
- ] })] }));
67
- }
@@ -1,11 +0,0 @@
1
- import type { HierarchicalTrackSelectorModel } from '../../model';
2
- import type { AnyConfigurationModel } from '@jbrowse/core/configuration';
3
- export interface InfoArgs {
4
- target: HTMLElement;
5
- id: string;
6
- conf: AnyConfigurationModel;
7
- }
8
- declare const FacetedSelector: ({ model, }: {
9
- model: HierarchicalTrackSelectorModel;
10
- }) => import("react/jsx-runtime").JSX.Element;
11
- export default FacetedSelector;
@@ -1,75 +0,0 @@
1
- "use strict";
2
- var __importDefault = (this && this.__importDefault) || function (mod) {
3
- return (mod && mod.__esModule) ? mod : { "default": mod };
4
- };
5
- Object.defineProperty(exports, "__esModule", { value: true });
6
- const jsx_runtime_1 = require("react/jsx-runtime");
7
- const ui_1 = require("@jbrowse/core/ui");
8
- const SanitizedHTML_1 = __importDefault(require("@jbrowse/core/ui/SanitizedHTML"));
9
- const mobx_react_1 = require("mobx-react");
10
- const mui_1 = require("tss-react/mui");
11
- const FacetFilters_1 = __importDefault(require("./FacetFilters"));
12
- const FacetedDataGrid_1 = __importDefault(require("./FacetedDataGrid"));
13
- const FacetedHeader_1 = __importDefault(require("./FacetedHeader"));
14
- const TrackLabelMenu_1 = __importDefault(require("../tree/TrackLabelMenu"));
15
- const useStyles = (0, mui_1.makeStyles)()({
16
- cell: {
17
- whiteSpace: 'nowrap',
18
- overflow: 'hidden',
19
- textOverflow: 'ellipsis',
20
- },
21
- resizeHandle: {
22
- marginLeft: 5,
23
- background: 'grey',
24
- width: 5,
25
- },
26
- });
27
- const frac = 0.75;
28
- const FacetedSelector = (0, mobx_react_1.observer)(function FacetedSelector({ model, }) {
29
- const { classes } = useStyles();
30
- const { selection, shownTrackIds, faceted } = model;
31
- const { rows, panelWidth, showFilters, filteredNonMetadataKeys, filteredMetadataKeys, } = faceted;
32
- const columns = [
33
- {
34
- field: 'name',
35
- hideable: false,
36
- renderCell: params => {
37
- const { value, row } = params;
38
- const { id, conf } = row;
39
- return ((0, jsx_runtime_1.jsxs)("div", { className: classes.cell, children: [(0, jsx_runtime_1.jsx)(SanitizedHTML_1.default, { html: value }), (0, jsx_runtime_1.jsx)(TrackLabelMenu_1.default, { id: id, conf: conf, trackId: id, model: model })] }));
40
- },
41
- },
42
- ...filteredNonMetadataKeys.map(e => {
43
- return {
44
- field: e,
45
- renderCell: params => {
46
- const val = params.value;
47
- return val ? ((0, jsx_runtime_1.jsx)(SanitizedHTML_1.default, { className: classes.cell, html: val })) : ('');
48
- },
49
- };
50
- }),
51
- ...filteredMetadataKeys.map(e => {
52
- return {
53
- field: `metadata.${e}`,
54
- headerName: ['name', ...filteredNonMetadataKeys].includes(e)
55
- ? `${e} (from metadata)`
56
- : e,
57
- valueGetter: (_, row) => { var _a; return `${(_a = row.metadata[e]) !== null && _a !== void 0 ? _a : ''}`; },
58
- renderCell: params => {
59
- const val = params.value;
60
- return val ? ((0, jsx_runtime_1.jsx)(SanitizedHTML_1.default, { className: classes.cell, html: val })) : ('');
61
- },
62
- };
63
- }),
64
- ];
65
- return ((0, jsx_runtime_1.jsxs)(jsx_runtime_1.Fragment, { children: [(0, jsx_runtime_1.jsx)(FacetedHeader_1.default, { model: model }), (0, jsx_runtime_1.jsxs)("div", { style: {
66
- display: 'flex',
67
- overflow: 'hidden',
68
- height: window.innerHeight * frac,
69
- width: window.innerWidth * frac,
70
- }, children: [(0, jsx_runtime_1.jsx)("div", { style: {
71
- height: window.innerHeight * frac,
72
- width: window.innerWidth * frac - (showFilters ? panelWidth : 0),
73
- }, children: (0, jsx_runtime_1.jsx)(FacetedDataGrid_1.default, { model: model, columns: columns, shownTrackIds: shownTrackIds, selection: selection }) }), showFilters ? ((0, jsx_runtime_1.jsxs)(jsx_runtime_1.Fragment, { children: [(0, jsx_runtime_1.jsx)(ui_1.ResizeHandle, { vertical: true, onDrag: dist => faceted.setPanelWidth(panelWidth - dist), className: classes.resizeHandle }), (0, jsx_runtime_1.jsx)("div", { style: { width: panelWidth, overflow: 'auto' }, children: (0, jsx_runtime_1.jsx)(FacetFilters_1.default, { model: model, rows: rows, columns: columns }) })] })) : null] })] }));
74
- });
75
- exports.default = FacetedSelector;
@@ -1,6 +0,0 @@
1
- export interface Row {
2
- id: string;
3
- metadata?: Record<string, unknown>;
4
- [key: string]: unknown;
5
- }
6
- export declare function getRowStr(facet: string, row: Row): string;
@@ -1,9 +0,0 @@
1
- "use strict";
2
- Object.defineProperty(exports, "__esModule", { value: true });
3
- exports.getRowStr = getRowStr;
4
- function getRowStr(facet, row) {
5
- var _a;
6
- return `${(facet.startsWith('metadata.')
7
- ? (_a = row.metadata) === null || _a === void 0 ? void 0 : _a[facet.replace('metadata.', '')]
8
- : row[facet]) || ''}`;
9
- }
@@ -1,11 +0,0 @@
1
- import type { HierarchicalTrackSelectorModel } from '../../model';
2
- import type { AnyConfigurationModel } from '@jbrowse/core/configuration';
3
- import type { MenuItem } from '@jbrowse/core/ui/Menu';
4
- declare const DropdownTrackSelector: ({ model, tracks, extraMenuItems, children, onClick, }: {
5
- model: HierarchicalTrackSelectorModel;
6
- tracks: AnyConfigurationModel[];
7
- extraMenuItems: MenuItem[];
8
- onClick?: () => void;
9
- children: React.ReactElement;
10
- }) => import("react/jsx-runtime").JSX.Element | null;
11
- export default DropdownTrackSelector;
@@ -1,34 +0,0 @@
1
- "use strict";
2
- var __importDefault = (this && this.__importDefault) || function (mod) {
3
- return (mod && mod.__esModule) ? mod : { "default": mod };
4
- };
5
- Object.defineProperty(exports, "__esModule", { value: true });
6
- const jsx_runtime_1 = require("react/jsx-runtime");
7
- const react_1 = require("react");
8
- const CascadingMenuButton_1 = __importDefault(require("@jbrowse/core/ui/CascadingMenuButton"));
9
- const SanitizedHTML_1 = __importDefault(require("@jbrowse/core/ui/SanitizedHTML"));
10
- const util_1 = require("@jbrowse/core/util");
11
- const tracks_1 = require("@jbrowse/core/util/tracks");
12
- const mobx_react_1 = require("mobx-react");
13
- const TrackLabelMenu_1 = __importDefault(require("./TrackLabelMenu"));
14
- const DropdownTrackSelector = (0, mobx_react_1.observer)(function ({ model, tracks, extraMenuItems, children, onClick, }) {
15
- const { view } = model;
16
- const [open, setOpen] = (0, react_1.useState)(false);
17
- const session = (0, util_1.getSession)(model);
18
- return view ? ((0, jsx_runtime_1.jsx)(CascadingMenuButton_1.default, { closeAfterItemClick: false, onClick: onClick, menuItems: [
19
- ...tracks.map(t => ({
20
- type: 'checkbox',
21
- label: ((0, jsx_runtime_1.jsxs)(jsx_runtime_1.Fragment, { children: [(0, jsx_runtime_1.jsx)(SanitizedHTML_1.default, { html: (0, tracks_1.getTrackName)(t, session) }), ' ', (0, jsx_runtime_1.jsx)(TrackLabelMenu_1.default, { id: t.trackId, trackId: t.trackId, model: model, conf: t, setOpen: setOpen, stopPropagation: true })] })),
22
- checked: view.tracks.some((f) => f.configuration === t),
23
- onClick: () => {
24
- if (!open) {
25
- if (model.view.toggleTrack(t.trackId)) {
26
- model.addToRecentlyUsed(t.trackId);
27
- }
28
- }
29
- },
30
- })),
31
- ...extraMenuItems,
32
- ], children: children })) : null;
33
- });
34
- exports.default = DropdownTrackSelector;
@@ -1,5 +0,0 @@
1
- import type { HierarchicalTrackSelectorModel } from '../../model';
2
- declare const FavoriteTracks: ({ model, }: {
3
- model: HierarchicalTrackSelectorModel;
4
- }) => import("react/jsx-runtime").JSX.Element | null;
5
- export default FavoriteTracks;
@@ -1,45 +0,0 @@
1
- "use strict";
2
- var __importDefault = (this && this.__importDefault) || function (mod) {
3
- return (mod && mod.__esModule) ? mod : { "default": mod };
4
- };
5
- Object.defineProperty(exports, "__esModule", { value: true });
6
- const jsx_runtime_1 = require("react/jsx-runtime");
7
- const Grade_1 = __importDefault(require("@mui/icons-material/Grade"));
8
- const material_1 = require("@mui/material");
9
- const mobx_react_1 = require("mobx-react");
10
- const mui_1 = require("tss-react/mui");
11
- const DropdownTrackSelector_1 = __importDefault(require("./DropdownTrackSelector"));
12
- const useStyles = (0, mui_1.makeStyles)()({
13
- smallBadge: {
14
- height: 14,
15
- },
16
- margin: {
17
- marginRight: 10,
18
- },
19
- });
20
- const FavoriteTracks = (0, mobx_react_1.observer)(function ({ model, }) {
21
- const { classes } = useStyles();
22
- const { view, favoriteTracks } = model;
23
- return view ? ((0, jsx_runtime_1.jsx)(DropdownTrackSelector_1.default, { onClick: () => {
24
- model.setFavoritesCounter(0);
25
- }, tracks: favoriteTracks, model: model, extraMenuItems: favoriteTracks.length
26
- ? [
27
- { type: 'divider' },
28
- {
29
- label: 'Clear favorites',
30
- onClick: () => {
31
- model.clearFavorites();
32
- },
33
- },
34
- ]
35
- : [
36
- {
37
- label: 'No favorite tracks yet',
38
- onClick: () => { },
39
- },
40
- ], children: (0, jsx_runtime_1.jsx)(material_1.Tooltip, { title: "Favorite tracks", children: (0, jsx_runtime_1.jsx)(material_1.Badge, { classes: { badge: classes.smallBadge }, color: "secondary", anchorOrigin: {
41
- vertical: 'bottom',
42
- horizontal: 'right',
43
- }, className: classes.margin, badgeContent: model.favoritesCounter, children: (0, jsx_runtime_1.jsx)(Grade_1.default, {}) }) }) })) : null;
44
- });
45
- exports.default = FavoriteTracks;
@@ -1,5 +0,0 @@
1
- import type { HierarchicalTrackSelectorModel } from '../../model';
2
- declare const HamburgerMenu: ({ model, }: {
3
- model: HierarchicalTrackSelectorModel;
4
- }) => import("react/jsx-runtime").JSX.Element;
5
- export default HamburgerMenu;
@@ -1,196 +0,0 @@
1
- "use strict";
2
- var __createBinding = (this && this.__createBinding) || (Object.create ? (function(o, m, k, k2) {
3
- if (k2 === undefined) k2 = k;
4
- var desc = Object.getOwnPropertyDescriptor(m, k);
5
- if (!desc || ("get" in desc ? !m.__esModule : desc.writable || desc.configurable)) {
6
- desc = { enumerable: true, get: function() { return m[k]; } };
7
- }
8
- Object.defineProperty(o, k2, desc);
9
- }) : (function(o, m, k, k2) {
10
- if (k2 === undefined) k2 = k;
11
- o[k2] = m[k];
12
- }));
13
- var __setModuleDefault = (this && this.__setModuleDefault) || (Object.create ? (function(o, v) {
14
- Object.defineProperty(o, "default", { enumerable: true, value: v });
15
- }) : function(o, v) {
16
- o["default"] = v;
17
- });
18
- var __importStar = (this && this.__importStar) || (function () {
19
- var ownKeys = function(o) {
20
- ownKeys = Object.getOwnPropertyNames || function (o) {
21
- var ar = [];
22
- for (var k in o) if (Object.prototype.hasOwnProperty.call(o, k)) ar[ar.length] = k;
23
- return ar;
24
- };
25
- return ownKeys(o);
26
- };
27
- return function (mod) {
28
- if (mod && mod.__esModule) return mod;
29
- var result = {};
30
- if (mod != null) for (var k = ownKeys(mod), i = 0; i < k.length; i++) if (k[i] !== "default") __createBinding(result, mod, k[i]);
31
- __setModuleDefault(result, mod);
32
- return result;
33
- };
34
- })();
35
- var __importDefault = (this && this.__importDefault) || function (mod) {
36
- return (mod && mod.__esModule) ? mod : { "default": mod };
37
- };
38
- Object.defineProperty(exports, "__esModule", { value: true });
39
- const jsx_runtime_1 = require("react/jsx-runtime");
40
- const react_1 = require("react");
41
- const configuration_1 = require("@jbrowse/core/configuration");
42
- const CascadingMenuButton_1 = __importDefault(require("@jbrowse/core/ui/CascadingMenuButton"));
43
- const util_1 = require("@jbrowse/core/util");
44
- const Menu_1 = __importDefault(require("@mui/icons-material/Menu"));
45
- const mobx_react_1 = require("mobx-react");
46
- const FacetedDialog = (0, react_1.lazy)(() => Promise.resolve().then(() => __importStar(require('../faceted/FacetedDialog'))));
47
- const CloseConnectionDialog = (0, react_1.lazy)(() => Promise.resolve().then(() => __importStar(require('../dialogs/CloseConnectionDialog'))));
48
- const DeleteConnectionDialog = (0, react_1.lazy)(() => Promise.resolve().then(() => __importStar(require('../dialogs/DeleteConnectionDialog'))));
49
- const ManageConnectionsDialog = (0, react_1.lazy)(() => Promise.resolve().then(() => __importStar(require('../dialogs/ManageConnectionsDialog'))));
50
- const ToggleConnectionsDialog = (0, react_1.lazy)(() => Promise.resolve().then(() => __importStar(require('../dialogs/ToggleConnectionsDialog'))));
51
- const HamburgerMenu = (0, mobx_react_1.observer)(function ({ model, }) {
52
- const session = (0, util_1.getSession)(model);
53
- const [modalInfo, setModalInfo] = (0, react_1.useState)();
54
- const [deleteDialogDetails, setDeleteDialogDetails] = (0, react_1.useState)();
55
- const [connectionToggleOpen, setConnectionToggleOpen] = (0, react_1.useState)(false);
56
- const [connectionManagerOpen, setConnectionManagerOpen] = (0, react_1.useState)(false);
57
- const [facetedOpen, setFacetedOpen] = (0, react_1.useState)(false);
58
- function breakConnection(connectionConf, deletingConnection) {
59
- var _a;
60
- const name = (0, configuration_1.readConfObject)(connectionConf, 'name');
61
- const result = (_a = session.prepareToBreakConnection) === null || _a === void 0 ? void 0 : _a.call(session, connectionConf);
62
- if (result) {
63
- const [safelyBreakConnection, dereferenceTypeCount] = result;
64
- if (Object.keys(dereferenceTypeCount).length > 0) {
65
- setModalInfo({
66
- connectionConf,
67
- safelyBreakConnection,
68
- dereferenceTypeCount,
69
- name,
70
- });
71
- }
72
- else {
73
- safelyBreakConnection();
74
- }
75
- }
76
- if (deletingConnection) {
77
- setDeleteDialogDetails({ name, connectionConf });
78
- }
79
- }
80
- return ((0, jsx_runtime_1.jsxs)(jsx_runtime_1.Fragment, { children: [(0, jsx_runtime_1.jsx)(CascadingMenuButton_1.default, { menuItems: [
81
- {
82
- label: 'Open faceted track selector',
83
- onClick: () => {
84
- setFacetedOpen(true);
85
- },
86
- },
87
- ...((0, util_1.isSessionWithAddTracks)(session)
88
- ? [
89
- {
90
- label: 'Add track...',
91
- onClick: () => {
92
- if ((0, util_1.isSessionModelWithWidgets)(session)) {
93
- session.showWidget(session.addWidget('AddTrackWidget', 'addTrackWidget', {
94
- view: model.view.id,
95
- }));
96
- }
97
- },
98
- },
99
- ]
100
- : []),
101
- {
102
- label: 'Connections...',
103
- subMenu: [
104
- ...((0, util_1.isSessionModelWithConnections)(session)
105
- ? [
106
- {
107
- label: 'Turn on/off connections...',
108
- onClick: () => {
109
- setConnectionToggleOpen(true);
110
- },
111
- },
112
- ]
113
- : []),
114
- ...((0, util_1.isSessionModelWithConnectionEditing)(session)
115
- ? [
116
- {
117
- label: 'Add connection...',
118
- onClick: () => {
119
- if ((0, util_1.isSessionModelWithWidgets)(session)) {
120
- session.showWidget(session.addWidget('AddConnectionWidget', 'addConnectionWidget'));
121
- }
122
- },
123
- },
124
- {
125
- label: 'Delete connections...',
126
- onClick: () => {
127
- setConnectionManagerOpen(true);
128
- },
129
- },
130
- ]
131
- : []),
132
- ],
133
- },
134
- {
135
- label: 'Sort...',
136
- type: 'subMenu',
137
- subMenu: [
138
- {
139
- label: 'Sort tracks by name',
140
- type: 'checkbox',
141
- checked: model.activeSortTrackNames,
142
- onClick: () => {
143
- model.setSortTrackNames(!model.activeSortTrackNames);
144
- },
145
- },
146
- {
147
- label: 'Sort categories by name',
148
- type: 'checkbox',
149
- checked: model.activeSortCategories,
150
- onClick: () => {
151
- model.setSortCategories(!model.activeSortCategories);
152
- },
153
- },
154
- ],
155
- },
156
- {
157
- label: 'Collapse...',
158
- type: 'subMenu',
159
- subMenu: [
160
- ...(model.hasAnySubcategories
161
- ? [
162
- {
163
- label: 'Collapse subcategories',
164
- onClick: () => {
165
- model.collapseSubCategories();
166
- },
167
- },
168
- ]
169
- : []),
170
- {
171
- label: 'Collapse top-level categories',
172
- onClick: () => {
173
- model.collapseTopLevelCategories();
174
- },
175
- },
176
- {
177
- label: 'Expand all categories',
178
- onClick: () => {
179
- model.expandAllCategories();
180
- },
181
- },
182
- ],
183
- },
184
- ], children: (0, jsx_runtime_1.jsx)(Menu_1.default, {}) }), (0, jsx_runtime_1.jsxs)(react_1.Suspense, { fallback: null, children: [modalInfo ? ((0, jsx_runtime_1.jsx)(CloseConnectionDialog, { modalInfo: modalInfo, onClose: () => {
185
- setModalInfo(undefined);
186
- } })) : null, deleteDialogDetails ? ((0, jsx_runtime_1.jsx)(DeleteConnectionDialog, { handleClose: () => {
187
- setDeleteDialogDetails(undefined);
188
- }, deleteDialogDetails: deleteDialogDetails, session: session })) : null, connectionManagerOpen ? ((0, jsx_runtime_1.jsx)(ManageConnectionsDialog, { handleClose: () => {
189
- setConnectionManagerOpen(false);
190
- }, breakConnection: breakConnection, session: session })) : null, connectionToggleOpen ? ((0, jsx_runtime_1.jsx)(ToggleConnectionsDialog, { handleClose: () => {
191
- setConnectionToggleOpen(false);
192
- }, session: session, breakConnection: breakConnection })) : null, facetedOpen ? ((0, jsx_runtime_1.jsx)(FacetedDialog, { handleClose: () => {
193
- setFacetedOpen(false);
194
- }, model: model })) : null] })] }));
195
- });
196
- exports.default = HamburgerMenu;
@@ -1,6 +0,0 @@
1
- import type { HierarchicalTrackSelectorModel } from '../../model';
2
- declare const HierarchicalTrackSelectorHeader: ({ model, setHeaderHeight, }: {
3
- model: HierarchicalTrackSelectorModel;
4
- setHeaderHeight: (n: number) => void;
5
- }) => import("react/jsx-runtime").JSX.Element;
6
- export default HierarchicalTrackSelectorHeader;
@@ -1,38 +0,0 @@
1
- "use strict";
2
- var __importDefault = (this && this.__importDefault) || function (mod) {
3
- return (mod && mod.__esModule) ? mod : { "default": mod };
4
- };
5
- Object.defineProperty(exports, "__esModule", { value: true });
6
- const jsx_runtime_1 = require("react/jsx-runtime");
7
- const Clear_1 = __importDefault(require("@mui/icons-material/Clear"));
8
- const material_1 = require("@mui/material");
9
- const mobx_react_1 = require("mobx-react");
10
- const mui_1 = require("tss-react/mui");
11
- const HamburgerMenu_1 = __importDefault(require("./HamburgerMenu"));
12
- const ShoppingCart_1 = __importDefault(require("../ShoppingCart"));
13
- const FavoriteTracks_1 = __importDefault(require("./FavoriteTracks"));
14
- const RecentlyUsedTracks_1 = __importDefault(require("./RecentlyUsedTracks"));
15
- const useStyles = (0, mui_1.makeStyles)()(theme => ({
16
- searchBox: {
17
- margin: theme.spacing(2),
18
- },
19
- }));
20
- const SearchTracksTextField = (0, mobx_react_1.observer)(function ({ model, }) {
21
- const { filterText } = model;
22
- const { classes } = useStyles();
23
- return ((0, jsx_runtime_1.jsx)(material_1.TextField, { className: classes.searchBox, label: "Filter tracks", value: filterText, onChange: event => {
24
- model.setFilterText(event.target.value);
25
- }, fullWidth: true, slotProps: {
26
- input: {
27
- endAdornment: ((0, jsx_runtime_1.jsx)(material_1.InputAdornment, { position: "end", children: (0, jsx_runtime_1.jsx)(material_1.IconButton, { onClick: () => {
28
- model.clearFilterText();
29
- }, children: (0, jsx_runtime_1.jsx)(Clear_1.default, {}) }) })),
30
- },
31
- } }));
32
- });
33
- const HierarchicalTrackSelectorHeader = (0, mobx_react_1.observer)(function ({ model, setHeaderHeight, }) {
34
- return ((0, jsx_runtime_1.jsx)("div", { ref: ref => {
35
- setHeaderHeight((ref === null || ref === void 0 ? void 0 : ref.getBoundingClientRect().height) || 0);
36
- }, "data-testid": "hierarchical_track_selector", children: (0, jsx_runtime_1.jsxs)("div", { style: { display: 'flex' }, children: [(0, jsx_runtime_1.jsx)(HamburgerMenu_1.default, { model: model }), (0, jsx_runtime_1.jsx)(ShoppingCart_1.default, { model: model }), (0, jsx_runtime_1.jsx)(SearchTracksTextField, { model: model }), (0, jsx_runtime_1.jsx)(RecentlyUsedTracks_1.default, { model: model }), (0, jsx_runtime_1.jsx)(FavoriteTracks_1.default, { model: model })] }) }));
37
- });
38
- exports.default = HierarchicalTrackSelectorHeader;
@@ -1,8 +0,0 @@
1
- import type { TreeNode } from '../../generateHierarchy';
2
- import type { HierarchicalTrackSelectorModel } from '../../model';
3
- declare const HierarchicalTree: ({ height, tree, model, }: {
4
- height: number;
5
- tree: TreeNode;
6
- model: HierarchicalTrackSelectorModel;
7
- }) => import("react/jsx-runtime").JSX.Element;
8
- export default HierarchicalTree;