@jbrowse/plugin-data-management 2.6.3 → 2.7.1

package/esm/PluginStoreWidget/components/InstalledPluginsList.js

@@ -2,7 +2,7 @@ import React from 'react';
 import { observer } from 'mobx-react';
 import { List, Typography } from '@mui/material';
 import InstalledPlugin from './InstalledPlugin';
-export default observer(function InstalledPluginsList({ pluginManager, model, }) {
+const InstalledPluginsList = observer(function InstalledPluginsList({ pluginManager, model, }) {
     const { plugins } = pluginManager;
     const { filterText } = model;
     const externalPlugins = plugins.filter(p => { var _a; return !((_a = pluginManager.pluginMetadata[p.name]) === null || _a === void 0 ? void 0 : _a.isCore); });
@@ -10,3 +10,4 @@ export default observer(function InstalledPluginsList({ pluginManager, model, })
         .filter(p => p.name.toLowerCase().includes(filterText.toLowerCase()))
         .map(p => React.createElement(InstalledPlugin, { key: p.name, plugin: p, model: model }))) : (React.createElement(Typography, null, "No plugins currently installed"))));
 });
+export default InstalledPluginsList;

package/esm/PluginStoreWidget/components/PluginCard.d.ts

@@ -1,9 +1,9 @@
 import React from 'react';
 import { JBrowsePlugin } from '@jbrowse/core/util/types';
 import { PluginStoreModel } from '../model';
-declare const _default: ({ plugin, model, adminMode, }: {
+declare const PluginCard: ({ plugin, model, adminMode, }: {
     plugin: JBrowsePlugin;
     model: PluginStoreModel;
     adminMode: boolean;
 }) => React.JSX.Element;
-export default _default;
+export default PluginCard;

package/esm/PluginStoreWidget/components/PluginCard.js

@@ -25,7 +25,7 @@ const useStyles = makeStyles()({
         alignItems: 'center',
     },
 });
-export default observer(function PluginCard({ plugin, model, adminMode, }) {
+const PluginCard = observer(function PluginCard({ plugin, model, adminMode, }) {
     const { classes } = useStyles();
     const session = getSession(model);
     const { pluginManager } = getEnv(model);
@@ -56,3 +56,4 @@ export default observer(function PluginCard({ plugin, model, adminMode, }) {
                     setTempDisabled(true);
                 } }, isInstalled ? 'Installed' : 'Install'))));
 });
+export default PluginCard;

package/esm/PluginStoreWidget/components/PluginStoreWidget.d.ts

@@ -1,7 +1,6 @@
 import React from 'react';
 import { PluginStoreModel } from '../model';
-declare function PluginStoreWidget({ model }: {
+declare const PluginStoreWidget: ({ model, }: {
     model: PluginStoreModel;
-}): React.JSX.Element;
-declare const _default: typeof PluginStoreWidget;
-export default _default;
+}) => React.JSX.Element;
+export default PluginStoreWidget;

package/esm/PluginStoreWidget/components/PluginStoreWidget.js

@@ -31,7 +31,7 @@ const useStyles = makeStyles()(theme => ({
         display: 'flex',
     },
 }));
-function PluginStoreWidget({ model }) {
+const PluginStoreWidget = observer(function ({ model, }) {
     const { classes } = useStyles();
     const { plugins, error } = useFetchPlugins();
     const [open, setOpen] = useState(false);
@@ -70,5 +70,5 @@ function PluginStoreWidget({ model }) {
                         .includes(model.filterText.toLowerCase()));
             })
                 .map(plugin => (React.createElement(PluginCard, { key: plugin.name, plugin: plugin, model: model, adminMode: !!adminMode })))) : (React.createElement(LoadingEllipses, null)))));
-}
-export default observer(PluginStoreWidget);
+});
+export default PluginStoreWidget;

package/esm/index.d.ts

@@ -1,10 +1,6 @@
 /// <reference types="react" />
 import Plugin from '@jbrowse/core/Plugin';
 import PluginManager from '@jbrowse/core/PluginManager';
-declare const SetDefaultSession: import("react").LazyExoticComponent<({ rootModel, onClose }: {
-    rootModel?: unknown;
-    onClose: () => void;
-}) => import("react").JSX.Element | null>;
 declare const AssemblyManager: import("react").LazyExoticComponent<({ rootModel, onClose, }: {
     rootModel: any;
     onClose: (arg: boolean) => void;
@@ -16,14 +12,10 @@ export default class extends Plugin {
             rootModel: any;
             onClose: (arg: boolean) => void;
         }) => import("react").JSX.Element>;
-        SetDefaultSession: import("react").LazyExoticComponent<({ rootModel, onClose }: {
-            rootModel?: unknown;
-            onClose: () => void;
-        }) => import("react").JSX.Element | null>;
     };
     install(pluginManager: PluginManager): void;
     configure(_pluginManager: PluginManager): void;
 }
-export { AssemblyManager, SetDefaultSession };
+export { AssemblyManager };
 export { type AddTrackModel } from './AddTrackWidget/model';
 export { type HierarchicalTrackSelectorModel } from './HierarchicalTrackSelectorWidget';

package/esm/index.js

@@ -5,7 +5,6 @@ import AddTrackWidgetF from './AddTrackWidget';
 import AddConnectionWidgetF from './AddConnectionWidget';
 import PluginStoreWidgetF from './PluginStoreWidget';
 import HierarchicalTrackSelectorWidgetF from './HierarchicalTrackSelectorWidget';
-const SetDefaultSession = lazy(() => import('./SetDefaultSession'));
 const AssemblyManager = lazy(() => import('./AssemblyManager'));
 export default class extends Plugin {
     constructor() {
@@ -13,7 +12,6 @@ export default class extends Plugin {
         this.name = 'DataManagementPlugin';
         this.exports = {
             AssemblyManager,
-            SetDefaultSession,
         };
     }
     install(pluginManager) {
@@ -25,4 +23,4 @@ export default class extends Plugin {
     }
     configure(_pluginManager) { }
 }
-export { AssemblyManager, SetDefaultSession };
+export { AssemblyManager };

package/esm/ucsc-trackhub/model.js

@@ -12,7 +12,7 @@ export default function UCSCTrackHubConnection(pluginManager) {
     }))
         .actions(self => ({
         async connect() {
-            var _a;
+            var _a, _b;
             const session = getSession(self);
             const notLoadedAssemblies = [];
             try {
@@ -80,7 +80,7 @@ export default function UCSCTrackHubConnection(pluginManager) {
             catch (e) {
                 console.error(e);
                 session.notify(`There was a problem connecting to the UCSC Track Hub "${self.configuration.name}". Please make sure you have entered a valid hub.txt file. The error that was thrown is: "${e}"`, 'error');
-                session.breakConnection(self.configuration);
+                (_b = session.breakConnection) === null || _b === void 0 ? void 0 : _b.call(session, self.configuration);
             }
         },
     }));

package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@jbrowse/plugin-data-management",
-  "version": "2.6.3",
+  "version": "2.7.1",
   "description": "JBrowse 2 linear genome view",
   "keywords": [
     "jbrowse",
@@ -39,7 +39,7 @@
     "@gmod/ucsc-hub": "^0.1.6",
     "@mui/icons-material": "^5.0.1",
     "@mui/x-data-grid": "^6.0.1",
-    "clsx": "^1.1.0",
+    "clsx": "^2.0.0",
     "react-virtualized-auto-sizer": "^1.0.2",
     "react-vtree": "^3.0.0-beta.1",
     "react-window": "^1.8.6"
@@ -47,9 +47,10 @@
   "peerDependencies": {
     "@jbrowse/core": "^2.0.0",
     "@jbrowse/plugin-config": "^2.0.0",
+    "@jbrowse/product-core": "^2.0.0",
     "@mui/material": "^5.0.0",
     "mobx": "^6.0.0",
-    "mobx-react": "^7.0.0",
+    "mobx-react": "^9.0.0",
     "mobx-state-tree": "^5.0.0",
     "react": ">=16.8.0",
     "tss-react": "^4.0.0"
@@ -60,5 +61,5 @@
   "distModule": "esm/index.js",
   "srcModule": "src/index.ts",
   "module": "esm/index.js",
-  "gitHead": "ed402c87efb0904858d602c363bd1757d5742129"
+  "gitHead": "2cda1611eebd12517f2a3cfc1b612face27005d4"
 }

package/dist/SetDefaultSession/SetDefaultSession.d.ts

@@ -1,6 +0,0 @@
-import React from 'react';
-declare const SetDefaultSession: ({ rootModel, onClose }: {
-    rootModel?: unknown;
-    onClose: () => void;
-}) => React.JSX.Element | null;
-export default SetDefaultSession;

package/dist/SetDefaultSession/SetDefaultSession.js

@@ -1,38 +0,0 @@
-"use strict";
-var __importDefault = (this && this.__importDefault) || function (mod) {
-    return (mod && mod.__esModule) ? mod : { "default": mod };
-};
-Object.defineProperty(exports, "__esModule", { value: true });
-const react_1 = __importDefault(require("react"));
-const mobx_react_1 = require("mobx-react");
-const material_1 = require("@mui/material");
-function canSetDefaultSession(obj) {
-    return typeof obj === 'object' && !!obj && 'jbrowse' in obj;
-}
-const SetDefaultSession = (0, mobx_react_1.observer)(({ rootModel, onClose }) => {
-    if (!rootModel) {
-        return null;
-    }
-    if (!canSetDefaultSession(rootModel)) {
-        console.error('Incorrect rootmodel');
-        return null;
-    }
-    const { jbrowse, session } = rootModel;
-    return (react_1.default.createElement(material_1.Dialog, { open: true, onClose: onClose },
-        react_1.default.createElement(material_1.DialogTitle, null, "Set default session"),
-        react_1.default.createElement(material_1.DialogContent, null,
-            react_1.default.createElement(material_1.Typography, null, "Select \"Set current session as default\" to make your current session saved to the config file. You can also hit \"Clear default session\", which would remove the default session from the config.")),
-        react_1.default.createElement(material_1.DialogActions, null,
-            react_1.default.createElement(material_1.Button, { variant: "contained", onClick: () => {
-                    jbrowse.setDefaultSessionConf({
-                        name: `New session`,
-                    });
-                    onClose();
-                } }, "Clear default session"),
-            react_1.default.createElement(material_1.Button, { color: "secondary", variant: "contained", onClick: () => onClose() }, "Cancel"),
-            react_1.default.createElement(material_1.Button, { color: "primary", variant: "contained", onClick: () => {
-                    jbrowse.setDefaultSessionConf(session);
-                    onClose();
-                } }, "Set current session as default"))));
-});
-exports.default = SetDefaultSession;

package/dist/SetDefaultSession/index.d.ts

@@ -1 +0,0 @@
-export { default } from './SetDefaultSession';

package/dist/SetDefaultSession/index.js

@@ -1,8 +0,0 @@
-"use strict";
-var __importDefault = (this && this.__importDefault) || function (mod) {
-    return (mod && mod.__esModule) ? mod : { "default": mod };
-};
-Object.defineProperty(exports, "__esModule", { value: true });
-exports.default = void 0;
-var SetDefaultSession_1 = require("./SetDefaultSession");
-Object.defineProperty(exports, "default", { enumerable: true, get: function () { return __importDefault(SetDefaultSession_1).default; } });

package/esm/SetDefaultSession/SetDefaultSession.d.ts

@@ -1,6 +0,0 @@
-import React from 'react';
-declare const SetDefaultSession: ({ rootModel, onClose }: {
-    rootModel?: unknown;
-    onClose: () => void;
-}) => React.JSX.Element | null;
-export default SetDefaultSession;

package/esm/SetDefaultSession/SetDefaultSession.js

@@ -1,33 +0,0 @@
-import React from 'react';
-import { observer } from 'mobx-react';
-import { Dialog, DialogTitle, DialogContent, DialogActions, Button, Typography, } from '@mui/material';
-function canSetDefaultSession(obj) {
-    return typeof obj === 'object' && !!obj && 'jbrowse' in obj;
-}
-const SetDefaultSession = observer(({ rootModel, onClose }) => {
-    if (!rootModel) {
-        return null;
-    }
-    if (!canSetDefaultSession(rootModel)) {
-        console.error('Incorrect rootmodel');
-        return null;
-    }
-    const { jbrowse, session } = rootModel;
-    return (React.createElement(Dialog, { open: true, onClose: onClose },
-        React.createElement(DialogTitle, null, "Set default session"),
-        React.createElement(DialogContent, null,
-            React.createElement(Typography, null, "Select \"Set current session as default\" to make your current session saved to the config file. You can also hit \"Clear default session\", which would remove the default session from the config.")),
-        React.createElement(DialogActions, null,
-            React.createElement(Button, { variant: "contained", onClick: () => {
-                    jbrowse.setDefaultSessionConf({
-                        name: `New session`,
-                    });
-                    onClose();
-                } }, "Clear default session"),
-            React.createElement(Button, { color: "secondary", variant: "contained", onClick: () => onClose() }, "Cancel"),
-            React.createElement(Button, { color: "primary", variant: "contained", onClick: () => {
-                    jbrowse.setDefaultSessionConf(session);
-                    onClose();
-                } }, "Set current session as default"))));
-});
-export default SetDefaultSession;

package/esm/SetDefaultSession/index.d.ts

@@ -1 +0,0 @@
-export { default } from './SetDefaultSession';

package/esm/SetDefaultSession/index.js

@@ -1 +0,0 @@
-export { default } from './SetDefaultSession';