@jbrowse/plugin-data-management 2.5.0 → 2.6.2

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (382) hide show
  1. package/dist/AddConnectionWidget/components/AddConnectionWidget.d.ts +2 -1
  2. package/dist/AddConnectionWidget/components/AddConnectionWidget.js +0 -1
  3. package/dist/AddConnectionWidget/components/ConfigureConnection.d.ts +2 -1
  4. package/dist/AddConnectionWidget/components/ConfigureConnection.js +0 -1
  5. package/dist/AddConnectionWidget/components/ConnectionTypeSelect.d.ts +2 -1
  6. package/dist/AddConnectionWidget/components/ConnectionTypeSelect.js +0 -1
  7. package/dist/AddConnectionWidget/index.js +0 -1
  8. package/dist/AddConnectionWidget/model.js +0 -1
  9. package/dist/AddTrackWidget/components/AddTrackWidget.d.ts +2 -1
  10. package/dist/AddTrackWidget/components/AddTrackWidget.js +0 -1
  11. package/dist/AddTrackWidget/components/ConfirmTrack.d.ts +2 -1
  12. package/dist/AddTrackWidget/components/ConfirmTrack.js +0 -1
  13. package/dist/AddTrackWidget/components/DefaultAddTrackWorkflow.d.ts +2 -1
  14. package/dist/AddTrackWidget/components/DefaultAddTrackWorkflow.js +1 -2
  15. package/dist/AddTrackWidget/components/PasteConfigWorkflow.d.ts +2 -1
  16. package/dist/AddTrackWidget/components/PasteConfigWorkflow.js +1 -1
  17. package/dist/AddTrackWidget/components/TextIndexingConfig.d.ts +2 -1
  18. package/dist/AddTrackWidget/components/TextIndexingConfig.js +0 -1
  19. package/dist/AddTrackWidget/components/TrackAdapterSelector.d.ts +2 -1
  20. package/dist/AddTrackWidget/components/TrackAdapterSelector.js +0 -1
  21. package/dist/AddTrackWidget/components/TrackSourceSelect.d.ts +2 -1
  22. package/dist/AddTrackWidget/components/TrackSourceSelect.js +0 -1
  23. package/dist/AddTrackWidget/components/TrackTypeSelector.d.ts +2 -1
  24. package/dist/AddTrackWidget/components/TrackTypeSelector.js +0 -1
  25. package/dist/AddTrackWidget/index.js +0 -1
  26. package/dist/AddTrackWidget/model.js +0 -1
  27. package/dist/AssemblyManager/AssemblyAddForm.d.ts +2 -1
  28. package/dist/AssemblyManager/AssemblyAddForm.js +0 -1
  29. package/dist/AssemblyManager/AssemblyEditor.d.ts +2 -1
  30. package/dist/AssemblyManager/AssemblyEditor.js +0 -1
  31. package/dist/AssemblyManager/AssemblyManager.d.ts +2 -1
  32. package/dist/AssemblyManager/AssemblyManager.js +0 -1
  33. package/dist/AssemblyManager/AssemblyTable.d.ts +2 -1
  34. package/dist/AssemblyManager/AssemblyTable.js +0 -1
  35. package/dist/AssemblyManager/index.js +0 -1
  36. package/dist/HierarchicalTrackSelectorWidget/components/HierarchicalFab.d.ts +2 -1
  37. package/dist/HierarchicalTrackSelectorWidget/components/HierarchicalFab.js +0 -1
  38. package/dist/HierarchicalTrackSelectorWidget/components/HierarchicalTrackSelector.d.ts +2 -1
  39. package/dist/HierarchicalTrackSelectorWidget/components/HierarchicalTrackSelector.js +4 -10
  40. package/dist/HierarchicalTrackSelectorWidget/components/ShoppingCart.d.ts +2 -1
  41. package/dist/HierarchicalTrackSelectorWidget/components/ShoppingCart.js +0 -1
  42. package/dist/HierarchicalTrackSelectorWidget/components/dialogs/CloseConnectionDialog.d.ts +8 -8
  43. package/dist/HierarchicalTrackSelectorWidget/components/dialogs/CloseConnectionDialog.js +6 -11
  44. package/dist/HierarchicalTrackSelectorWidget/components/dialogs/DeleteConnectionDialog.d.ts +2 -1
  45. package/dist/HierarchicalTrackSelectorWidget/components/dialogs/DeleteConnectionDialog.js +0 -1
  46. package/dist/HierarchicalTrackSelectorWidget/components/dialogs/ManageConnectionsDialog.d.ts +2 -1
  47. package/dist/HierarchicalTrackSelectorWidget/components/dialogs/ManageConnectionsDialog.js +0 -1
  48. package/dist/HierarchicalTrackSelectorWidget/components/dialogs/ToggleConnectionsDialog.d.ts +3 -3
  49. package/dist/HierarchicalTrackSelectorWidget/components/dialogs/ToggleConnectionsDialog.js +27 -23
  50. package/dist/HierarchicalTrackSelectorWidget/components/faceted/FacetFilters.d.ts +2 -1
  51. package/dist/HierarchicalTrackSelectorWidget/components/faceted/FacetFilters.js +0 -1
  52. package/dist/HierarchicalTrackSelectorWidget/components/faceted/FacetedDialog.d.ts +2 -1
  53. package/dist/HierarchicalTrackSelectorWidget/components/faceted/FacetedDialog.js +0 -1
  54. package/dist/HierarchicalTrackSelectorWidget/components/faceted/FacetedHeader.d.ts +2 -1
  55. package/dist/HierarchicalTrackSelectorWidget/components/faceted/FacetedHeader.js +0 -1
  56. package/dist/HierarchicalTrackSelectorWidget/components/faceted/FacetedSelector.d.ts +2 -1
  57. package/dist/HierarchicalTrackSelectorWidget/components/faceted/FacetedSelector.js +32 -32
  58. package/dist/HierarchicalTrackSelectorWidget/components/faceted/util.js +0 -1
  59. package/dist/HierarchicalTrackSelectorWidget/components/tree/HamburgerMenu.d.ts +3 -3
  60. package/dist/HierarchicalTrackSelectorWidget/components/tree/HamburgerMenu.js +36 -42
  61. package/dist/HierarchicalTrackSelectorWidget/components/tree/HierarchicalHeader.d.ts +3 -3
  62. package/dist/HierarchicalTrackSelectorWidget/components/tree/HierarchicalHeader.js +2 -3
  63. package/dist/HierarchicalTrackSelectorWidget/components/tree/HierarchicalTree.d.ts +2 -1
  64. package/dist/HierarchicalTrackSelectorWidget/components/tree/HierarchicalTree.js +0 -1
  65. package/dist/HierarchicalTrackSelectorWidget/components/tree/TrackCategory.d.ts +2 -1
  66. package/dist/HierarchicalTrackSelectorWidget/components/tree/TrackCategory.js +0 -1
  67. package/dist/HierarchicalTrackSelectorWidget/components/tree/TrackLabel.d.ts +2 -1
  68. package/dist/HierarchicalTrackSelectorWidget/components/tree/TrackLabel.js +0 -1
  69. package/dist/HierarchicalTrackSelectorWidget/components/tree/TrackListNode.d.ts +2 -1
  70. package/dist/HierarchicalTrackSelectorWidget/components/tree/TrackListNode.js +0 -1
  71. package/dist/HierarchicalTrackSelectorWidget/components/util.js +0 -1
  72. package/dist/HierarchicalTrackSelectorWidget/configSchema.js +0 -1
  73. package/dist/HierarchicalTrackSelectorWidget/index.js +0 -1
  74. package/dist/HierarchicalTrackSelectorWidget/model.d.ts +69 -5
  75. package/dist/HierarchicalTrackSelectorWidget/model.js +100 -54
  76. package/dist/PluginStoreWidget/components/CustomPluginForm.d.ts +2 -1
  77. package/dist/PluginStoreWidget/components/CustomPluginForm.js +0 -1
  78. package/dist/PluginStoreWidget/components/InstalledPlugin.d.ts +2 -1
  79. package/dist/PluginStoreWidget/components/InstalledPlugin.js +0 -1
  80. package/dist/PluginStoreWidget/components/InstalledPluginsList.d.ts +2 -1
  81. package/dist/PluginStoreWidget/components/InstalledPluginsList.js +0 -1
  82. package/dist/PluginStoreWidget/components/PluginCard.d.ts +2 -1
  83. package/dist/PluginStoreWidget/components/PluginCard.js +0 -1
  84. package/dist/PluginStoreWidget/components/PluginStoreWidget.d.ts +2 -1
  85. package/dist/PluginStoreWidget/components/PluginStoreWidget.js +0 -1
  86. package/dist/PluginStoreWidget/index.js +0 -1
  87. package/dist/PluginStoreWidget/model.js +0 -1
  88. package/dist/SetDefaultSession/SetDefaultSession.d.ts +2 -1
  89. package/dist/SetDefaultSession/SetDefaultSession.js +0 -1
  90. package/dist/SetDefaultSession/index.js +0 -1
  91. package/dist/index.d.ts +4 -4
  92. package/dist/index.js +0 -1
  93. package/dist/ucsc-trackhub/configSchema.js +0 -1
  94. package/dist/ucsc-trackhub/index.js +0 -1
  95. package/dist/ucsc-trackhub/model.d.ts +12 -0
  96. package/dist/ucsc-trackhub/model.js +45 -13
  97. package/dist/ucsc-trackhub/ucscAssemblies.js +0 -1
  98. package/dist/ucsc-trackhub/ucscTrackHub.js +0 -1
  99. package/esm/AddConnectionWidget/components/AddConnectionWidget.d.ts +2 -1
  100. package/esm/AddConnectionWidget/components/AddConnectionWidget.js +0 -1
  101. package/esm/AddConnectionWidget/components/ConfigureConnection.d.ts +2 -1
  102. package/esm/AddConnectionWidget/components/ConfigureConnection.js +0 -1
  103. package/esm/AddConnectionWidget/components/ConnectionTypeSelect.d.ts +2 -1
  104. package/esm/AddConnectionWidget/components/ConnectionTypeSelect.js +0 -1
  105. package/esm/AddConnectionWidget/index.js +0 -1
  106. package/esm/AddConnectionWidget/model.js +0 -1
  107. package/esm/AddTrackWidget/components/AddTrackWidget.d.ts +2 -1
  108. package/esm/AddTrackWidget/components/AddTrackWidget.js +0 -1
  109. package/esm/AddTrackWidget/components/ConfirmTrack.d.ts +2 -1
  110. package/esm/AddTrackWidget/components/ConfirmTrack.js +0 -1
  111. package/esm/AddTrackWidget/components/DefaultAddTrackWorkflow.d.ts +2 -1
  112. package/esm/AddTrackWidget/components/DefaultAddTrackWorkflow.js +1 -2
  113. package/esm/AddTrackWidget/components/PasteConfigWorkflow.d.ts +2 -1
  114. package/esm/AddTrackWidget/components/PasteConfigWorkflow.js +1 -1
  115. package/esm/AddTrackWidget/components/TextIndexingConfig.d.ts +2 -1
  116. package/esm/AddTrackWidget/components/TextIndexingConfig.js +0 -1
  117. package/esm/AddTrackWidget/components/TrackAdapterSelector.d.ts +2 -1
  118. package/esm/AddTrackWidget/components/TrackAdapterSelector.js +0 -1
  119. package/esm/AddTrackWidget/components/TrackSourceSelect.d.ts +2 -1
  120. package/esm/AddTrackWidget/components/TrackSourceSelect.js +0 -1
  121. package/esm/AddTrackWidget/components/TrackTypeSelector.d.ts +2 -1
  122. package/esm/AddTrackWidget/components/TrackTypeSelector.js +0 -1
  123. package/esm/AddTrackWidget/index.js +0 -1
  124. package/esm/AddTrackWidget/model.js +0 -1
  125. package/esm/AssemblyManager/AssemblyAddForm.d.ts +2 -1
  126. package/esm/AssemblyManager/AssemblyAddForm.js +0 -1
  127. package/esm/AssemblyManager/AssemblyEditor.d.ts +2 -1
  128. package/esm/AssemblyManager/AssemblyEditor.js +0 -1
  129. package/esm/AssemblyManager/AssemblyManager.d.ts +2 -1
  130. package/esm/AssemblyManager/AssemblyManager.js +0 -1
  131. package/esm/AssemblyManager/AssemblyTable.d.ts +2 -1
  132. package/esm/AssemblyManager/AssemblyTable.js +0 -1
  133. package/esm/AssemblyManager/index.js +0 -1
  134. package/esm/HierarchicalTrackSelectorWidget/components/HierarchicalFab.d.ts +2 -1
  135. package/esm/HierarchicalTrackSelectorWidget/components/HierarchicalFab.js +0 -1
  136. package/esm/HierarchicalTrackSelectorWidget/components/HierarchicalTrackSelector.d.ts +2 -1
  137. package/esm/HierarchicalTrackSelectorWidget/components/HierarchicalTrackSelector.js +4 -10
  138. package/esm/HierarchicalTrackSelectorWidget/components/ShoppingCart.d.ts +2 -1
  139. package/esm/HierarchicalTrackSelectorWidget/components/ShoppingCart.js +0 -1
  140. package/esm/HierarchicalTrackSelectorWidget/components/dialogs/CloseConnectionDialog.d.ts +8 -8
  141. package/esm/HierarchicalTrackSelectorWidget/components/dialogs/CloseConnectionDialog.js +7 -12
  142. package/esm/HierarchicalTrackSelectorWidget/components/dialogs/DeleteConnectionDialog.d.ts +2 -1
  143. package/esm/HierarchicalTrackSelectorWidget/components/dialogs/DeleteConnectionDialog.js +0 -1
  144. package/esm/HierarchicalTrackSelectorWidget/components/dialogs/ManageConnectionsDialog.d.ts +2 -1
  145. package/esm/HierarchicalTrackSelectorWidget/components/dialogs/ManageConnectionsDialog.js +0 -1
  146. package/esm/HierarchicalTrackSelectorWidget/components/dialogs/ToggleConnectionsDialog.d.ts +3 -3
  147. package/esm/HierarchicalTrackSelectorWidget/components/dialogs/ToggleConnectionsDialog.js +27 -23
  148. package/esm/HierarchicalTrackSelectorWidget/components/faceted/FacetFilters.d.ts +2 -1
  149. package/esm/HierarchicalTrackSelectorWidget/components/faceted/FacetFilters.js +0 -1
  150. package/esm/HierarchicalTrackSelectorWidget/components/faceted/FacetedDialog.d.ts +2 -1
  151. package/esm/HierarchicalTrackSelectorWidget/components/faceted/FacetedDialog.js +0 -1
  152. package/esm/HierarchicalTrackSelectorWidget/components/faceted/FacetedHeader.d.ts +2 -1
  153. package/esm/HierarchicalTrackSelectorWidget/components/faceted/FacetedHeader.js +0 -1
  154. package/esm/HierarchicalTrackSelectorWidget/components/faceted/FacetedSelector.d.ts +2 -1
  155. package/esm/HierarchicalTrackSelectorWidget/components/faceted/FacetedSelector.js +32 -32
  156. package/esm/HierarchicalTrackSelectorWidget/components/faceted/util.js +0 -1
  157. package/esm/HierarchicalTrackSelectorWidget/components/tree/HamburgerMenu.d.ts +3 -3
  158. package/esm/HierarchicalTrackSelectorWidget/components/tree/HamburgerMenu.js +37 -43
  159. package/esm/HierarchicalTrackSelectorWidget/components/tree/HierarchicalHeader.d.ts +3 -3
  160. package/esm/HierarchicalTrackSelectorWidget/components/tree/HierarchicalHeader.js +2 -3
  161. package/esm/HierarchicalTrackSelectorWidget/components/tree/HierarchicalTree.d.ts +2 -1
  162. package/esm/HierarchicalTrackSelectorWidget/components/tree/HierarchicalTree.js +0 -1
  163. package/esm/HierarchicalTrackSelectorWidget/components/tree/TrackCategory.d.ts +2 -1
  164. package/esm/HierarchicalTrackSelectorWidget/components/tree/TrackCategory.js +0 -1
  165. package/esm/HierarchicalTrackSelectorWidget/components/tree/TrackLabel.d.ts +2 -1
  166. package/esm/HierarchicalTrackSelectorWidget/components/tree/TrackLabel.js +0 -1
  167. package/esm/HierarchicalTrackSelectorWidget/components/tree/TrackListNode.d.ts +2 -1
  168. package/esm/HierarchicalTrackSelectorWidget/components/tree/TrackListNode.js +0 -1
  169. package/esm/HierarchicalTrackSelectorWidget/components/util.js +0 -1
  170. package/esm/HierarchicalTrackSelectorWidget/configSchema.js +0 -1
  171. package/esm/HierarchicalTrackSelectorWidget/index.js +0 -1
  172. package/esm/HierarchicalTrackSelectorWidget/model.d.ts +69 -5
  173. package/esm/HierarchicalTrackSelectorWidget/model.js +101 -55
  174. package/esm/PluginStoreWidget/components/CustomPluginForm.d.ts +2 -1
  175. package/esm/PluginStoreWidget/components/CustomPluginForm.js +0 -1
  176. package/esm/PluginStoreWidget/components/InstalledPlugin.d.ts +2 -1
  177. package/esm/PluginStoreWidget/components/InstalledPlugin.js +0 -1
  178. package/esm/PluginStoreWidget/components/InstalledPluginsList.d.ts +2 -1
  179. package/esm/PluginStoreWidget/components/InstalledPluginsList.js +0 -1
  180. package/esm/PluginStoreWidget/components/PluginCard.d.ts +2 -1
  181. package/esm/PluginStoreWidget/components/PluginCard.js +0 -1
  182. package/esm/PluginStoreWidget/components/PluginStoreWidget.d.ts +2 -1
  183. package/esm/PluginStoreWidget/components/PluginStoreWidget.js +0 -1
  184. package/esm/PluginStoreWidget/index.js +0 -1
  185. package/esm/PluginStoreWidget/model.js +0 -1
  186. package/esm/SetDefaultSession/SetDefaultSession.d.ts +2 -1
  187. package/esm/SetDefaultSession/SetDefaultSession.js +0 -1
  188. package/esm/SetDefaultSession/index.js +0 -1
  189. package/esm/index.d.ts +4 -4
  190. package/esm/index.js +0 -1
  191. package/esm/ucsc-trackhub/configSchema.js +0 -1
  192. package/esm/ucsc-trackhub/index.js +0 -1
  193. package/esm/ucsc-trackhub/model.d.ts +12 -0
  194. package/esm/ucsc-trackhub/model.js +20 -11
  195. package/esm/ucsc-trackhub/ucscAssemblies.js +0 -1
  196. package/esm/ucsc-trackhub/ucscTrackHub.js +0 -1
  197. package/package.json +3 -4
  198. package/dist/AddConnectionWidget/components/AddConnectionWidget.js.map +0 -1
  199. package/dist/AddConnectionWidget/components/ConfigureConnection.js.map +0 -1
  200. package/dist/AddConnectionWidget/components/ConnectionTypeSelect.js.map +0 -1
  201. package/dist/AddConnectionWidget/index.js.map +0 -1
  202. package/dist/AddConnectionWidget/model.js.map +0 -1
  203. package/dist/AddTrackWidget/components/AddTrackWidget.js.map +0 -1
  204. package/dist/AddTrackWidget/components/ConfirmTrack.js.map +0 -1
  205. package/dist/AddTrackWidget/components/DefaultAddTrackWorkflow.js.map +0 -1
  206. package/dist/AddTrackWidget/components/PasteConfigWorkflow.js.map +0 -1
  207. package/dist/AddTrackWidget/components/TextIndexingConfig.js.map +0 -1
  208. package/dist/AddTrackWidget/components/TrackAdapterSelector.js.map +0 -1
  209. package/dist/AddTrackWidget/components/TrackSourceSelect.js.map +0 -1
  210. package/dist/AddTrackWidget/components/TrackTypeSelector.js.map +0 -1
  211. package/dist/AddTrackWidget/index.js.map +0 -1
  212. package/dist/AddTrackWidget/model.js.map +0 -1
  213. package/dist/AssemblyManager/AssemblyAddForm.js.map +0 -1
  214. package/dist/AssemblyManager/AssemblyEditor.js.map +0 -1
  215. package/dist/AssemblyManager/AssemblyManager.js.map +0 -1
  216. package/dist/AssemblyManager/AssemblyTable.js.map +0 -1
  217. package/dist/AssemblyManager/index.js.map +0 -1
  218. package/dist/HierarchicalTrackSelectorWidget/components/HierarchicalFab.js.map +0 -1
  219. package/dist/HierarchicalTrackSelectorWidget/components/HierarchicalTrackSelector.js.map +0 -1
  220. package/dist/HierarchicalTrackSelectorWidget/components/ShoppingCart.js.map +0 -1
  221. package/dist/HierarchicalTrackSelectorWidget/components/dialogs/CloseConnectionDialog.js.map +0 -1
  222. package/dist/HierarchicalTrackSelectorWidget/components/dialogs/DeleteConnectionDialog.js.map +0 -1
  223. package/dist/HierarchicalTrackSelectorWidget/components/dialogs/ManageConnectionsDialog.js.map +0 -1
  224. package/dist/HierarchicalTrackSelectorWidget/components/dialogs/ToggleConnectionsDialog.js.map +0 -1
  225. package/dist/HierarchicalTrackSelectorWidget/components/faceted/FacetFilters.js.map +0 -1
  226. package/dist/HierarchicalTrackSelectorWidget/components/faceted/FacetedDialog.js.map +0 -1
  227. package/dist/HierarchicalTrackSelectorWidget/components/faceted/FacetedHeader.js.map +0 -1
  228. package/dist/HierarchicalTrackSelectorWidget/components/faceted/FacetedSelector.js.map +0 -1
  229. package/dist/HierarchicalTrackSelectorWidget/components/faceted/util.js.map +0 -1
  230. package/dist/HierarchicalTrackSelectorWidget/components/tree/HamburgerMenu.js.map +0 -1
  231. package/dist/HierarchicalTrackSelectorWidget/components/tree/HierarchicalHeader.js.map +0 -1
  232. package/dist/HierarchicalTrackSelectorWidget/components/tree/HierarchicalTree.js.map +0 -1
  233. package/dist/HierarchicalTrackSelectorWidget/components/tree/TrackCategory.js.map +0 -1
  234. package/dist/HierarchicalTrackSelectorWidget/components/tree/TrackLabel.js.map +0 -1
  235. package/dist/HierarchicalTrackSelectorWidget/components/tree/TrackListNode.js.map +0 -1
  236. package/dist/HierarchicalTrackSelectorWidget/components/util.js.map +0 -1
  237. package/dist/HierarchicalTrackSelectorWidget/configSchema.js.map +0 -1
  238. package/dist/HierarchicalTrackSelectorWidget/index.js.map +0 -1
  239. package/dist/HierarchicalTrackSelectorWidget/model.js.map +0 -1
  240. package/dist/PluginStoreWidget/components/CustomPluginForm.js.map +0 -1
  241. package/dist/PluginStoreWidget/components/InstalledPlugin.js.map +0 -1
  242. package/dist/PluginStoreWidget/components/InstalledPluginsList.js.map +0 -1
  243. package/dist/PluginStoreWidget/components/PluginCard.js.map +0 -1
  244. package/dist/PluginStoreWidget/components/PluginStoreWidget.js.map +0 -1
  245. package/dist/PluginStoreWidget/index.js.map +0 -1
  246. package/dist/PluginStoreWidget/model.js.map +0 -1
  247. package/dist/SetDefaultSession/SetDefaultSession.js.map +0 -1
  248. package/dist/SetDefaultSession/index.js.map +0 -1
  249. package/dist/index.js.map +0 -1
  250. package/dist/ucsc-trackhub/configSchema.js.map +0 -1
  251. package/dist/ucsc-trackhub/index.js.map +0 -1
  252. package/dist/ucsc-trackhub/model.js.map +0 -1
  253. package/dist/ucsc-trackhub/ucscAssemblies.js.map +0 -1
  254. package/dist/ucsc-trackhub/ucscTrackHub.js.map +0 -1
  255. package/esm/AddConnectionWidget/components/AddConnectionWidget.js.map +0 -1
  256. package/esm/AddConnectionWidget/components/ConfigureConnection.js.map +0 -1
  257. package/esm/AddConnectionWidget/components/ConnectionTypeSelect.js.map +0 -1
  258. package/esm/AddConnectionWidget/index.js.map +0 -1
  259. package/esm/AddConnectionWidget/model.js.map +0 -1
  260. package/esm/AddTrackWidget/components/AddTrackWidget.js.map +0 -1
  261. package/esm/AddTrackWidget/components/ConfirmTrack.js.map +0 -1
  262. package/esm/AddTrackWidget/components/DefaultAddTrackWorkflow.js.map +0 -1
  263. package/esm/AddTrackWidget/components/PasteConfigWorkflow.js.map +0 -1
  264. package/esm/AddTrackWidget/components/TextIndexingConfig.js.map +0 -1
  265. package/esm/AddTrackWidget/components/TrackAdapterSelector.js.map +0 -1
  266. package/esm/AddTrackWidget/components/TrackSourceSelect.js.map +0 -1
  267. package/esm/AddTrackWidget/components/TrackTypeSelector.js.map +0 -1
  268. package/esm/AddTrackWidget/index.js.map +0 -1
  269. package/esm/AddTrackWidget/model.js.map +0 -1
  270. package/esm/AssemblyManager/AssemblyAddForm.js.map +0 -1
  271. package/esm/AssemblyManager/AssemblyEditor.js.map +0 -1
  272. package/esm/AssemblyManager/AssemblyManager.js.map +0 -1
  273. package/esm/AssemblyManager/AssemblyTable.js.map +0 -1
  274. package/esm/AssemblyManager/index.js.map +0 -1
  275. package/esm/HierarchicalTrackSelectorWidget/components/HierarchicalFab.js.map +0 -1
  276. package/esm/HierarchicalTrackSelectorWidget/components/HierarchicalTrackSelector.js.map +0 -1
  277. package/esm/HierarchicalTrackSelectorWidget/components/ShoppingCart.js.map +0 -1
  278. package/esm/HierarchicalTrackSelectorWidget/components/dialogs/CloseConnectionDialog.js.map +0 -1
  279. package/esm/HierarchicalTrackSelectorWidget/components/dialogs/DeleteConnectionDialog.js.map +0 -1
  280. package/esm/HierarchicalTrackSelectorWidget/components/dialogs/ManageConnectionsDialog.js.map +0 -1
  281. package/esm/HierarchicalTrackSelectorWidget/components/dialogs/ToggleConnectionsDialog.js.map +0 -1
  282. package/esm/HierarchicalTrackSelectorWidget/components/faceted/FacetFilters.js.map +0 -1
  283. package/esm/HierarchicalTrackSelectorWidget/components/faceted/FacetedDialog.js.map +0 -1
  284. package/esm/HierarchicalTrackSelectorWidget/components/faceted/FacetedHeader.js.map +0 -1
  285. package/esm/HierarchicalTrackSelectorWidget/components/faceted/FacetedSelector.js.map +0 -1
  286. package/esm/HierarchicalTrackSelectorWidget/components/faceted/util.js.map +0 -1
  287. package/esm/HierarchicalTrackSelectorWidget/components/tree/HamburgerMenu.js.map +0 -1
  288. package/esm/HierarchicalTrackSelectorWidget/components/tree/HierarchicalHeader.js.map +0 -1
  289. package/esm/HierarchicalTrackSelectorWidget/components/tree/HierarchicalTree.js.map +0 -1
  290. package/esm/HierarchicalTrackSelectorWidget/components/tree/TrackCategory.js.map +0 -1
  291. package/esm/HierarchicalTrackSelectorWidget/components/tree/TrackLabel.js.map +0 -1
  292. package/esm/HierarchicalTrackSelectorWidget/components/tree/TrackListNode.js.map +0 -1
  293. package/esm/HierarchicalTrackSelectorWidget/components/util.js.map +0 -1
  294. package/esm/HierarchicalTrackSelectorWidget/configSchema.js.map +0 -1
  295. package/esm/HierarchicalTrackSelectorWidget/index.js.map +0 -1
  296. package/esm/HierarchicalTrackSelectorWidget/model.js.map +0 -1
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  310. package/esm/ucsc-trackhub/ucscAssemblies.js.map +0 -1
  311. package/esm/ucsc-trackhub/ucscTrackHub.js.map +0 -1
  312. package/src/AddConnectionWidget/components/AddConnectionWidget.test.tsx +0 -139
  313. package/src/AddConnectionWidget/components/AddConnectionWidget.tsx +0 -114
  314. package/src/AddConnectionWidget/components/ConfigureConnection.tsx +0 -26
  315. package/src/AddConnectionWidget/components/ConnectionTypeSelect.tsx +0 -64
  316. package/src/AddConnectionWidget/components/__snapshots__/AddConnectionWidget.test.tsx.snap +0 -236
  317. package/src/AddConnectionWidget/index.ts +0 -19
  318. package/src/AddConnectionWidget/model.ts +0 -7
  319. package/src/AddTrackWidget/components/AddTrackWidget.test.tsx +0 -118
  320. package/src/AddTrackWidget/components/AddTrackWidget.tsx +0 -43
  321. package/src/AddTrackWidget/components/ConfirmTrack.tsx +0 -189
  322. package/src/AddTrackWidget/components/DefaultAddTrackWorkflow.tsx +0 -201
  323. package/src/AddTrackWidget/components/PasteConfigWorkflow.tsx +0 -64
  324. package/src/AddTrackWidget/components/TextIndexingConfig.tsx +0 -132
  325. package/src/AddTrackWidget/components/TrackAdapterSelector.tsx +0 -73
  326. package/src/AddTrackWidget/components/TrackSourceSelect.tsx +0 -48
  327. package/src/AddTrackWidget/components/TrackTypeSelector.tsx +0 -46
  328. package/src/AddTrackWidget/index.test.tsx +0 -247
  329. package/src/AddTrackWidget/index.ts +0 -19
  330. package/src/AddTrackWidget/model.ts +0 -179
  331. package/src/AssemblyManager/AssemblyAddForm.tsx +0 -250
  332. package/src/AssemblyManager/AssemblyEditor.tsx +0 -20
  333. package/src/AssemblyManager/AssemblyManager.test.tsx +0 -93
  334. package/src/AssemblyManager/AssemblyManager.tsx +0 -84
  335. package/src/AssemblyManager/AssemblyTable.tsx +0 -88
  336. package/src/AssemblyManager/index.ts +0 -1
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  339. package/src/HierarchicalTrackSelectorWidget/components/HierarchicalTrackSelector.tsx +0 -97
  340. package/src/HierarchicalTrackSelectorWidget/components/ShoppingCart.tsx +0 -73
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  342. package/src/HierarchicalTrackSelectorWidget/components/dialogs/CloseConnectionDialog.tsx +0 -69
  343. package/src/HierarchicalTrackSelectorWidget/components/dialogs/DeleteConnectionDialog.tsx +0 -53
  344. package/src/HierarchicalTrackSelectorWidget/components/dialogs/ManageConnectionsDialog.tsx +0 -84
  345. package/src/HierarchicalTrackSelectorWidget/components/dialogs/ToggleConnectionsDialog.tsx +0 -97
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  350. package/src/HierarchicalTrackSelectorWidget/components/faceted/util.ts +0 -5
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  358. package/src/HierarchicalTrackSelectorWidget/configSchema.ts +0 -3
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  360. package/src/HierarchicalTrackSelectorWidget/model.test.js +0 -24
  361. package/src/HierarchicalTrackSelectorWidget/model.ts +0 -284
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  363. package/src/PluginStoreWidget/components/InstalledPlugin.tsx +0 -167
  364. package/src/PluginStoreWidget/components/InstalledPluginsList.tsx +0 -49
  365. package/src/PluginStoreWidget/components/PluginCard.tsx +0 -106
  366. package/src/PluginStoreWidget/components/PluginStoreWidget.test.tsx +0 -132
  367. package/src/PluginStoreWidget/components/PluginStoreWidget.tsx +0 -181
  368. package/src/PluginStoreWidget/components/__snapshots__/PluginStoreWidget.test.tsx.snap +0 -869
  369. package/src/PluginStoreWidget/index.ts +0 -19
  370. package/src/PluginStoreWidget/model.test.tsx +0 -15
  371. package/src/PluginStoreWidget/model.ts +0 -26
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  374. package/src/SetDefaultSession/index.ts +0 -1
  375. package/src/__snapshots__/index.test.ts.snap +0 -9
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  379. package/src/ucsc-trackhub/index.ts +0 -19
  380. package/src/ucsc-trackhub/model.ts +0 -107
  381. package/src/ucsc-trackhub/ucscAssemblies.ts +0 -201
  382. package/src/ucsc-trackhub/ucscTrackHub.ts +0 -325
@@ -1,64 +0,0 @@
1
- import React, { useEffect } from 'react'
2
- import { IconButton, MenuItem, TextField } from '@mui/material'
3
- import { ConnectionType } from '@jbrowse/core/pluggableElementTypes'
4
- import { observer } from 'mobx-react'
5
-
6
- // icons
7
- import OpenInNewIcon from '@mui/icons-material/OpenInNew'
8
-
9
- export default observer(function ConnectionTypeSelect({
10
- connectionTypeChoices,
11
- connectionType,
12
- setConnectionType,
13
- }: {
14
- connectionTypeChoices: ConnectionType[]
15
- connectionType?: ConnectionType
16
- setConnectionType: (c?: ConnectionType) => void
17
- }) {
18
- useEffect(() => {
19
- if (!connectionType) {
20
- setConnectionType(connectionTypeChoices[0])
21
- }
22
- })
23
-
24
- return (
25
- <form autoComplete="off">
26
- {connectionType ? (
27
- <TextField
28
- value={connectionType.name}
29
- label="connectionType"
30
- helperText={
31
- connectionType.description ? (
32
- <>
33
- {connectionType.description}
34
- {connectionType.url ? (
35
- <IconButton
36
- href={connectionType.url}
37
- rel="noopener noreferrer"
38
- target="_blank"
39
- >
40
- <OpenInNewIcon />
41
- </IconButton>
42
- ) : null}
43
- </>
44
- ) : null
45
- }
46
- select
47
- fullWidth
48
- onChange={event =>
49
- setConnectionType(
50
- connectionTypeChoices.find(c => c.name === event.target.value),
51
- )
52
- }
53
- variant="outlined"
54
- >
55
- {connectionTypeChoices.map(c => (
56
- <MenuItem key={c.name} value={c.name}>
57
- {c.displayName || c.name}
58
- </MenuItem>
59
- ))}
60
- </TextField>
61
- ) : null}
62
- </form>
63
- )
64
- })
@@ -1,236 +0,0 @@
1
- // Jest Snapshot v1, https://goo.gl/fbAQLP
2
-
3
- exports[`<AddConnectionWidget /> renders 1`] = `
4
- <div
5
- class="css-1ohm0fb-root"
6
- >
7
- <div
8
- class="MuiStepper-root MuiStepper-vertical css-1nq3qk0-MuiStepper-root-stepper"
9
- >
10
- <div
11
- class="MuiStep-root MuiStep-vertical css-8wcvy5-MuiStep-root"
12
- >
13
- <span
14
- class="MuiStepLabel-root MuiStepLabel-vertical css-14sza3e-MuiStepLabel-root"
15
- >
16
- <span
17
- class="MuiStepLabel-iconContainer Mui-active css-vnkopk-MuiStepLabel-iconContainer"
18
- >
19
- <svg
20
- aria-hidden="true"
21
- class="MuiSvgIcon-root MuiSvgIcon-fontSizeMedium MuiStepIcon-root Mui-active css-1u4zpwo-MuiSvgIcon-root-MuiStepIcon-root"
22
- focusable="false"
23
- viewBox="0 0 24 24"
24
- >
25
- <circle
26
- cx="12"
27
- cy="12"
28
- r="12"
29
- />
30
- <text
31
- class="MuiStepIcon-text css-117w1su-MuiStepIcon-text"
32
- dominant-baseline="central"
33
- text-anchor="middle"
34
- x="12"
35
- y="12"
36
- >
37
- 1
38
- </text>
39
- </svg>
40
- </span>
41
- <span
42
- class="MuiStepLabel-labelContainer css-1vyamtt-MuiStepLabel-labelContainer"
43
- >
44
- <span
45
- class="MuiStepLabel-label Mui-active css-1hv8oq8-MuiStepLabel-label"
46
- >
47
- Select a Connection Type
48
- </span>
49
- </span>
50
- </span>
51
- <div
52
- class="MuiStepContent-root css-14yr603-MuiStepContent-root"
53
- >
54
- <div
55
- class="MuiCollapse-root MuiCollapse-vertical MuiStepContent-transition MuiCollapse-entered css-1rw7nzj-MuiCollapse-root-MuiStepContent-transition"
56
- style="min-height: 0px;"
57
- >
58
- <div
59
- class="MuiCollapse-wrapper MuiCollapse-vertical css-smkl36-MuiCollapse-wrapper"
60
- >
61
- <div
62
- class="MuiCollapse-wrapperInner MuiCollapse-vertical css-9l5vo-MuiCollapse-wrapperInner"
63
- >
64
- <form
65
- autocomplete="off"
66
- >
67
- <div
68
- class="MuiFormControl-root MuiFormControl-fullWidth MuiTextField-root css-wb57ya-MuiFormControl-root-MuiTextField-root"
69
- >
70
- <label
71
- class="MuiFormLabel-root MuiInputLabel-root MuiInputLabel-formControl MuiInputLabel-animated MuiInputLabel-shrink MuiInputLabel-outlined MuiFormLabel-colorPrimary MuiFormLabel-filled MuiInputLabel-root MuiInputLabel-formControl MuiInputLabel-animated MuiInputLabel-shrink MuiInputLabel-outlined css-1jy569b-MuiFormLabel-root-MuiInputLabel-root"
72
- data-shrink="true"
73
- for="mui-1"
74
- id="mui-1-label"
75
- >
76
- connectionType
77
- </label>
78
- <div
79
- class="MuiInputBase-root MuiOutlinedInput-root MuiInputBase-colorPrimary MuiInputBase-fullWidth MuiInputBase-formControl css-md26zr-MuiInputBase-root-MuiOutlinedInput-root"
80
- >
81
- <div
82
- aria-describedby="mui-1-helper-text"
83
- aria-expanded="false"
84
- aria-haspopup="listbox"
85
- aria-labelledby="mui-1-label mui-1"
86
- class="MuiSelect-select MuiSelect-outlined MuiInputBase-input MuiOutlinedInput-input css-11u53oe-MuiSelect-select-MuiInputBase-input-MuiOutlinedInput-input"
87
- id="mui-1"
88
- role="button"
89
- tabindex="0"
90
- >
91
- UCSC Track Hub
92
- </div>
93
- <input
94
- aria-hidden="true"
95
- aria-invalid="false"
96
- class="MuiSelect-nativeInput css-yf8vq0-MuiSelect-nativeInput"
97
- tabindex="-1"
98
- value="UCSCTrackHubConnection"
99
- />
100
- <svg
101
- aria-hidden="true"
102
- class="MuiSvgIcon-root MuiSvgIcon-fontSizeMedium MuiSelect-icon MuiSelect-iconOutlined css-hfutr2-MuiSvgIcon-root-MuiSelect-icon"
103
- data-testid="ArrowDropDownIcon"
104
- focusable="false"
105
- viewBox="0 0 24 24"
106
- >
107
- <path
108
- d="M7 10l5 5 5-5z"
109
- />
110
- </svg>
111
- <fieldset
112
- aria-hidden="true"
113
- class="MuiOutlinedInput-notchedOutline css-1d3z3hw-MuiOutlinedInput-notchedOutline"
114
- >
115
- <legend
116
- class="css-14lo706"
117
- >
118
- <span>
119
- connectionType
120
- </span>
121
- </legend>
122
- </fieldset>
123
- </div>
124
- <p
125
- class="MuiFormHelperText-root MuiFormHelperText-sizeMedium MuiFormHelperText-contained MuiFormHelperText-filled css-1wc848c-MuiFormHelperText-root"
126
- id="mui-1-helper-text"
127
- >
128
- A track or assembly hub in the Track Hub format
129
- <a
130
- class="MuiButtonBase-root MuiIconButton-root MuiIconButton-sizeMedium css-78trlr-MuiButtonBase-root-MuiIconButton-root"
131
- href="//genome.ucsc.edu/goldenPath/help/hgTrackHubHelp.html#Intro"
132
- rel="noopener noreferrer"
133
- tabindex="0"
134
- target="_blank"
135
- >
136
- <svg
137
- aria-hidden="true"
138
- class="MuiSvgIcon-root MuiSvgIcon-fontSizeMedium css-i4bv87-MuiSvgIcon-root"
139
- data-testid="OpenInNewIcon"
140
- focusable="false"
141
- viewBox="0 0 24 24"
142
- >
143
- <path
144
- d="M19 19H5V5h7V3H5c-1.11 0-2 .9-2 2v14c0 1.1.89 2 2 2h14c1.1 0 2-.9 2-2v-7h-2v7zM14 3v2h3.59l-9.83 9.83 1.41 1.41L19 6.41V10h2V3h-7z"
145
- />
146
- </svg>
147
- <span
148
- class="MuiTouchRipple-root css-8je8zh-MuiTouchRipple-root"
149
- />
150
- </a>
151
- </p>
152
- </div>
153
- </form>
154
- <div
155
- class="css-1spe31o-actionsContainer"
156
- >
157
- <button
158
- class="MuiButtonBase-root MuiButton-root MuiButton-text MuiButton-textPrimary MuiButton-sizeMedium MuiButton-textSizeMedium Mui-disabled MuiButton-root MuiButton-text MuiButton-textPrimary MuiButton-sizeMedium MuiButton-textSizeMedium css-1j3hqkx-MuiButtonBase-root-MuiButton-root-button"
159
- disabled=""
160
- tabindex="-1"
161
- type="button"
162
- >
163
- Back
164
- </button>
165
- <button
166
- class="MuiButtonBase-root MuiButton-root MuiButton-contained MuiButton-containedPrimary MuiButton-sizeMedium MuiButton-containedSizeMedium MuiButton-root MuiButton-contained MuiButton-containedPrimary MuiButton-sizeMedium MuiButton-containedSizeMedium css-1xo5g2a-MuiButtonBase-root-MuiButton-root-button"
167
- data-testid="addConnectionNext"
168
- tabindex="0"
169
- type="button"
170
- >
171
- Next
172
- <span
173
- class="MuiTouchRipple-root css-8je8zh-MuiTouchRipple-root"
174
- />
175
- </button>
176
- </div>
177
- </div>
178
- </div>
179
- </div>
180
- </div>
181
- </div>
182
- <div
183
- class="MuiStepConnector-root MuiStepConnector-vertical Mui-disabled css-1pe7n21-MuiStepConnector-root"
184
- >
185
- <span
186
- class="MuiStepConnector-line MuiStepConnector-lineVertical css-8t49rw-MuiStepConnector-line"
187
- />
188
- </div>
189
- <div
190
- class="MuiStep-root MuiStep-vertical css-8wcvy5-MuiStep-root"
191
- >
192
- <span
193
- class="MuiStepLabel-root MuiStepLabel-vertical Mui-disabled css-14sza3e-MuiStepLabel-root"
194
- >
195
- <span
196
- class="MuiStepLabel-iconContainer Mui-disabled css-vnkopk-MuiStepLabel-iconContainer"
197
- >
198
- <svg
199
- aria-hidden="true"
200
- class="MuiSvgIcon-root MuiSvgIcon-fontSizeMedium MuiStepIcon-root css-1u4zpwo-MuiSvgIcon-root-MuiStepIcon-root"
201
- focusable="false"
202
- viewBox="0 0 24 24"
203
- >
204
- <circle
205
- cx="12"
206
- cy="12"
207
- r="12"
208
- />
209
- <text
210
- class="MuiStepIcon-text css-117w1su-MuiStepIcon-text"
211
- dominant-baseline="central"
212
- text-anchor="middle"
213
- x="12"
214
- y="12"
215
- >
216
- 2
217
- </text>
218
- </svg>
219
- </span>
220
- <span
221
- class="MuiStepLabel-labelContainer css-1vyamtt-MuiStepLabel-labelContainer"
222
- >
223
- <span
224
- class="MuiStepLabel-label Mui-disabled css-1hv8oq8-MuiStepLabel-label"
225
- >
226
- Configure Connection
227
- </span>
228
- </span>
229
- </span>
230
- <div
231
- class="MuiStepContent-root MuiStepContent-last css-1mz1l2x-MuiStepContent-root"
232
- />
233
- </div>
234
- </div>
235
- </div>
236
- `;
@@ -1,19 +0,0 @@
1
- import { ConfigurationSchema } from '@jbrowse/core/configuration'
2
- import { WidgetType } from '@jbrowse/core/pluggableElementTypes'
3
- import PluginManager from '@jbrowse/core/PluginManager'
4
- import { lazy } from 'react'
5
-
6
- import stateModel from './model'
7
- const configSchema = ConfigurationSchema('AddConnectionWidget', {})
8
-
9
- export default (pluginManager: PluginManager) => {
10
- pluginManager.addWidgetType(() => {
11
- return new WidgetType({
12
- name: 'AddConnectionWidget',
13
- heading: 'Add a connection',
14
- configSchema,
15
- stateModel,
16
- ReactComponent: lazy(() => import('./components/AddConnectionWidget')),
17
- })
18
- })
19
- }
@@ -1,7 +0,0 @@
1
- import { types } from 'mobx-state-tree'
2
- import { ElementId } from '@jbrowse/core/util/types/mst'
3
-
4
- export default types.model('AddConnectionModel', {
5
- id: ElementId,
6
- type: types.literal('AddConnectionWidget'),
7
- })
@@ -1,118 +0,0 @@
1
- import React from 'react'
2
- import { render, fireEvent } from '@testing-library/react'
3
- import { createTestSession } from '@jbrowse/web/src/rootModel'
4
- import AddTrackWidget from './AddTrackWidget'
5
- jest.mock('@jbrowse/web/src/makeWorkerInstance', () => () => {})
6
-
7
- function getSession() {
8
- const session = createTestSession()
9
- session.addAssemblyConf({
10
- name: 'volMyt1',
11
- sequence: {
12
- trackId: 'ref0',
13
- type: 'ReferenceSequenceTrack',
14
- adapter: {
15
- type: 'FromConfigSequenceAdapter',
16
- features: [
17
- {
18
- refName: 'ctgA',
19
- uniqueId: 'firstId',
20
- start: 0,
21
- end: 1000,
22
- seq: 'cattgttgcggagttgaacaACGGCATTAGGAACACTTCCGTCTCtcacttttatacgattatgattggttctttagccttggtttagattggtagtagtagcggcgctaatgctacctgaattgagaactcgagcgggggctaggcaaattctgattcagcctgacttctcttggaaccctgcccataaatcaaagggttagtgcggccaaaacgttggacaacggtattagaagaccaacctgaccaccaaaccgtcaattaaccggtatcttctcggaaacggcggttctctcctagatagcgatctgtggtctcaccatgcaatttaaacaggtgagtaaagattgctacaaatacgagactagctgtcaccagatgctgttcatctgttggctccttggtcgctccgttgtacccaggctactttgaaagagcgcagaatacttagacggtatcgatcatggtagcatagcattctgataacatgtatggagttcgaacatccgtctggggccggacggtccgtttgaggttggttgatctgggtgatagtcagcaagatagacgttagataacaaattaaaggattttaccttagattgcgactagtacaacggtacatcggtgattcgcgctctactagatcacgctatgggtaccataaacaaacggtggaccttctcaagctggttgacgcctcagcaacataggcttcctcctccacgcatctcagcataaaaggcttataaactgcttctttgtgccagagcaactcaattaagcccttggtaccgtgggcacgcattctgtcacggtgaccaactgttcatcctgaatcgccgaatgggactatttggtacaggaatcaagcggatggcactactgcagcttatttacgacggtattcttaaagtttttaagacaatgtatttcatgggtagttcggtttgttttattgctacacaggctcttgtagacgacctacttagcactacgg',
23
- },
24
- ],
25
- },
26
- },
27
- })
28
- session.addTrackConf({
29
- trackId: 'i3jUPmrgMOS',
30
- type: 'FeatureTrack',
31
- name: 'Filter Test',
32
- assemblyNames: ['volMyt1'],
33
- adapter: {
34
- type: 'FromConfigAdapter',
35
- features: [
36
- {
37
- uniqueId: 'one',
38
- refName: 'ctgA',
39
- start: 100,
40
- end: 101,
41
- type: 'foo',
42
- name: 'Boris',
43
- note: 'note for boris',
44
- },
45
- {
46
- uniqueId: 'two',
47
- refName: 'ctgA',
48
- start: 110,
49
- end: 111,
50
- type: 'bar',
51
- name: 'Theresa',
52
- note: 'note for theresa',
53
- },
54
- {
55
- uniqueId: 'three',
56
- refName: 'ctgA',
57
- start: 120,
58
- end: 121,
59
- type: 'baz',
60
- name: 'Nigel',
61
- note: 'note for nigel',
62
- },
63
- {
64
- uniqueId: 'four',
65
- refName: 'ctgA',
66
- start: 130,
67
- end: 131,
68
- type: 'quux',
69
- name: 'Geoffray',
70
- note: 'note for geoffray',
71
- },
72
- ],
73
- },
74
- filterAttributes: ['type', 'start', 'end'],
75
- })
76
-
77
- const view = session.addView('LinearGenomeView', {
78
- displayedRegions: [
79
- {
80
- assemblyName: 'volMyt1',
81
- refName: 'ctgA',
82
- start: 0,
83
- end: 1000,
84
- },
85
- ],
86
- })
87
-
88
- const model = session.addWidget('AddTrackWidget', 'addTrackWidget', {
89
- view: view.id,
90
- })
91
- return { session, model }
92
- }
93
-
94
- describe('<AddTrackWidget />', () => {
95
- it('adds a track', async () => {
96
- const { session, model } = getSession()
97
- const { getByTestId, getAllByTestId, findByText, findAllByText } = render(
98
- <AddTrackWidget model={model} />,
99
- )
100
- expect(session.sessionTracks.length).toBe(1)
101
- fireEvent.change(getAllByTestId('urlInput')[0], {
102
- target: { value: 'test.txt' },
103
- })
104
- fireEvent.click(getAllByTestId('addTrackNextButton')[0])
105
- fireEvent.mouseDown(getByTestId('adapterTypeSelect'))
106
- const bamAdapter = await findByText('BAM adapter')
107
- fireEvent.click(bamAdapter)
108
- fireEvent.change(getByTestId('trackNameInput'), {
109
- target: { value: 'Test track name' },
110
- })
111
- fireEvent.mouseDown(getByTestId('trackTypeSelect'))
112
- fireEvent.click(await findByText('Feature track'))
113
- fireEvent.mouseDown(getByTestId('assemblyNameSelect'))
114
- fireEvent.click((await findAllByText('volMyt1'))[1])
115
- fireEvent.click(getAllByTestId('addTrackNextButton')[0])
116
- expect(session.sessionTracks.length).toBe(2)
117
- })
118
- })
@@ -1,43 +0,0 @@
1
- import React, { useState } from 'react'
2
- import { observer } from 'mobx-react'
3
- import { FormControl, FormHelperText, Select, MenuItem } from '@mui/material'
4
- import { getEnv } from '@jbrowse/core/util'
5
-
6
- // locals
7
- import { AddTrackModel } from '../model'
8
- import DefaultAddTrackWorkflow from './DefaultAddTrackWorkflow'
9
- import PasteConfigWorkflow from './PasteConfigWorkflow'
10
-
11
- function AddTrackSelector({ model }: { model: AddTrackModel }) {
12
- const [val, setVal] = useState('Default add track workflow')
13
- const { pluginManager } = getEnv(model)
14
- const widgets = pluginManager.getAddTrackWorkflowElements()
15
- const ComponentMap = {
16
- 'Default add track workflow': DefaultAddTrackWorkflow,
17
- 'Add track JSON': PasteConfigWorkflow,
18
- ...Object.fromEntries(widgets.map(w => [w.name, w.ReactComponent])),
19
- } as { [key: string]: React.FC<{ model: AddTrackModel }> }
20
-
21
- // make sure the selected value is in the list
22
- const val2 = ComponentMap[val] ? val : 'Default add track workflow'
23
- const Component = ComponentMap[val2]
24
- return (
25
- <>
26
- <FormControl>
27
- <Select value={val2} onChange={event => setVal(event.target.value)}>
28
- {Object.keys(ComponentMap).map(e => (
29
- <MenuItem key={e} value={e}>
30
- {e}
31
- </MenuItem>
32
- ))}
33
- </Select>
34
- <FormHelperText>Type of add track workflow</FormHelperText>
35
- </FormControl>
36
-
37
- <br />
38
- <Component model={model} />
39
- </>
40
- )
41
- }
42
-
43
- export default observer(AddTrackSelector)
@@ -1,189 +0,0 @@
1
- import React, { useEffect, useState } from 'react'
2
- import {
3
- Checkbox,
4
- FormControl,
5
- FormControlLabel,
6
- Link,
7
- TextField,
8
- Typography,
9
- } from '@mui/material'
10
- import { makeStyles } from 'tss-react/mui'
11
- import {
12
- supportedIndexingAdapters,
13
- getSession,
14
- isElectron,
15
- } from '@jbrowse/core/util'
16
- import { observer } from 'mobx-react'
17
- import { UNKNOWN } from '@jbrowse/core/util/tracks'
18
- import { AssemblySelector } from '@jbrowse/core/ui'
19
-
20
- // locals
21
- import { AddTrackModel } from '../model'
22
- import TextIndexingConfig from './TextIndexingConfig'
23
- import TrackTypeSelector from './TrackTypeSelector'
24
- import TrackAdapterSelector from './TrackAdapterSelector'
25
-
26
- const useStyles = makeStyles()(theme => ({
27
- spacing: {
28
- marginBottom: theme.spacing(3),
29
- },
30
- }))
31
-
32
- function StatusMessage({
33
- trackAdapter,
34
- trackType,
35
- }: {
36
- trackAdapter: { type: string; subadapter?: { type: string } }
37
- trackType: string
38
- }) {
39
- const { classes } = useStyles()
40
- const { type, subadapter } = trackAdapter
41
- return type === 'SNPCoverageAdapter' ? (
42
- <Typography className={classes.spacing}>
43
- Selected <code>{trackType}</code>. Using adapter <code>{type}</code> with
44
- subadapter <code>{subadapter?.type}</code>. Please enter a track name and,
45
- if necessary, update the track type.
46
- </Typography>
47
- ) : (
48
- <Typography className={classes.spacing}>
49
- Using adapter <code>{type}</code> and guessing track type{' '}
50
- <code>{trackType}</code>. Please enter a track name and, if necessary,
51
- update the track type.
52
- </Typography>
53
- )
54
- }
55
-
56
- function UnknownAdapterPrompt({ model }: { model: AddTrackModel }) {
57
- const { classes } = useStyles()
58
- return (
59
- <>
60
- <Typography className={classes.spacing}>
61
- JBrowse was not able to guess the adapter type for this data, but it may
62
- be in the list below. If not, you can{' '}
63
- <Link
64
- href="https://github.com/GMOD/jbrowse-components/releases"
65
- target="_blank"
66
- rel="noopener noreferrer"
67
- >
68
- check for new releases
69
- </Link>{' '}
70
- of JBrowse to see if they support this data type or{' '}
71
- <Link
72
- href="https://github.com/GMOD/jbrowse-components/issues/new"
73
- target="_blank"
74
- rel="noopener noreferrer"
75
- >
76
- file an issue
77
- </Link>{' '}
78
- and add a feature request for this data type.
79
- </Typography>
80
- <TrackAdapterSelector model={model} />
81
- </>
82
- )
83
- }
84
-
85
- export default observer(function ConfirmTrack({
86
- model,
87
- }: {
88
- model: AddTrackModel
89
- }) {
90
- const { classes } = useStyles()
91
- const [check, setCheck] = useState(true)
92
- const session = getSession(model)
93
- const { trackName, trackAdapter, trackType, warningMessage, adapterHint } =
94
- model
95
-
96
- useEffect(() => {
97
- if (adapterHint === '' && trackAdapter) {
98
- model.setAdapterHint(trackAdapter.type)
99
- }
100
- }, [adapterHint, trackAdapter, trackAdapter?.type, model])
101
-
102
- if (model.unsupported) {
103
- return (
104
- <Typography className={classes.spacing}>
105
- This version of JBrowse cannot display data of this type. It is
106
- possible, however, that there is a newer version that can display them.
107
- You can{' '}
108
- <Link
109
- href="https://github.com/GMOD/jbrowse-components/releases"
110
- target="_blank"
111
- rel="noopener noreferrer"
112
- >
113
- check for new releases
114
- </Link>{' '}
115
- of JBrowse or{' '}
116
- <Link
117
- href="https://github.com/GMOD/jbrowse-components/issues/new"
118
- target="_blank"
119
- rel="noopener noreferrer"
120
- >
121
- file an issue
122
- </Link>{' '}
123
- and add a feature request for this data type.
124
- </Typography>
125
- )
126
- }
127
- if (trackAdapter?.type === UNKNOWN) {
128
- return <UnknownAdapterPrompt model={model} />
129
- }
130
-
131
- if (!trackAdapter?.type) {
132
- return <Typography>Could not recognize this data type.</Typography>
133
- }
134
-
135
- const supportedForIndexing = supportedIndexingAdapters(trackAdapter?.type)
136
- return (
137
- <div>
138
- {trackAdapter ? (
139
- <StatusMessage trackAdapter={trackAdapter} trackType={trackType} />
140
- ) : null}
141
- {warningMessage ? (
142
- <Typography style={{ color: 'orange' }}>{warningMessage}</Typography>
143
- ) : null}
144
- <TextField
145
- className={classes.spacing}
146
- label="trackName"
147
- helperText="A name for this track"
148
- fullWidth
149
- value={trackName}
150
- onChange={event => model.setTrackName(event.target.value)}
151
- inputProps={{ 'data-testid': 'trackNameInput' }}
152
- />
153
- <TrackAdapterSelector model={model} />
154
- <TrackTypeSelector model={model} />
155
- <AssemblySelector
156
- session={session}
157
- helperText="Select assembly to add track to"
158
- selected={model.assembly}
159
- onChange={asm => model.setAssembly(asm)}
160
- TextFieldProps={{
161
- fullWidth: true,
162
- SelectProps: {
163
- // @ts-expect-error
164
- SelectDisplayProps: { 'data-testid': 'assemblyNameSelect' },
165
- },
166
- }}
167
- />
168
- {isElectron && supportedForIndexing && (
169
- <FormControl>
170
- <FormControlLabel
171
- label={'Index track for text searching?'}
172
- control={
173
- <Checkbox
174
- checked={check}
175
- onChange={e => {
176
- setCheck(e.target.checked)
177
- model.setTextIndexTrack(e.target.checked)
178
- }}
179
- />
180
- }
181
- />
182
- </FormControl>
183
- )}
184
- {isElectron && check && supportedForIndexing ? (
185
- <TextIndexingConfig model={model} />
186
- ) : null}
187
- </div>
188
- )
189
- })