npm - @jbrowse/plugin-data-management - Versions diffs - 2.3.4 → 2.4.1 - Mend

@jbrowse/plugin-data-management 2.3.4 → 2.4.1

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.

Files changed (121) hide show

package/esm/HierarchicalTrackSelectorWidget/components/faceted/FacetFilters.js CHANGED Viewed

@@ -28,7 +28,7 @@ function FacetFilter({ column, vals, width, dispatch, filters, }) {
             React.createElement(Tooltip, { title: "Minimize/expand this facet filter" },
                 React.createElement(IconButton, { onClick: () => setVisible(!visible), size: "small" }, visible ? React.createElement(MinimizeIcon, null) : React.createElement(AddIcon, null)))),
         visible ? (React.createElement(Select, { multiple: true, native: true, className: classes.select, value: filters[column.field], onChange: event => {
-                // @ts-ignore
+                // @ts-expect-error
                 const { options } = event.target;
                 const val = [];
                 const len = options.length;
@@ -49,22 +49,22 @@ function FacetFilter({ column, vals, width, dispatch, filters, }) {
 export default function FacetFilters({ rows, columns, dispatch, filters, width, }) {
     const facets = columns.slice(1);
     const uniqs = facets.map(() => new Map());
-    rows.forEach(row => {
-        facets.forEach((column, index) => {
+    for (const row of rows) {
+        for (const [index, column] of facets.entries()) {
             const elt = uniqs[index];
             const key = `${row[column.field] || ''}`;
             const val = elt.get(key);
             // we don't allow filtering on empty yet
             if (key) {
-                if (val !== undefined) {
-                    elt.set(key, val + 1);
+                if (val === undefined) {
+                    elt.set(key, 1);
                 }
                 else {
-                    elt.set(key, 1);
+                    elt.set(key, val + 1);
                 }
             }
-        });
-    });
-    return (React.createElement("div", null, facets.map((column, index) => (React.createElement(FacetFilter, { key: column.field, vals: Array.from(uniqs[index]), column: column, width: width, dispatch: dispatch, filters: filters })))));
+        }
+    }
+    return (React.createElement("div", null, facets.map((column, index) => (React.createElement(FacetFilter, { key: column.field, vals: [...uniqs[index]], column: column, width: width, dispatch: dispatch, filters: filters })))));
 }
 //# sourceMappingURL=FacetFilters.js.map

package/esm/HierarchicalTrackSelectorWidget/components/faceted/FacetFilters.js.map CHANGED Viewed

	@@ -1 +1 @@
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1	+ {"version":3,"file":"FacetFilters.js","sourceRoot":"","sources":["../../../../src/HierarchicalTrackSelectorWidget/components/faceted/FacetFilters.tsx"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAE,EAAE,QAAQ,EAAE,MAAM,OAAO,CAAA;AACvC,OAAO,EACL,UAAU,EACV,WAAW,EACX,MAAM,EACN,UAAU,EACV,OAAO,GACR,MAAM,eAAe,CAAA;AACtB,OAAO,EAAE,UAAU,EAAE,MAAM,eAAe,CAAA;AAE1C,OAAO;AACP,OAAO,SAAS,MAAM,2BAA2B,CAAA;AACjD,OAAO,YAAY,MAAM,8BAA8B,CAAA;AACvD,OAAO,OAAO,MAAM,yBAAyB,CAAA;AAE7C,MAAM,SAAS,GAAG,UAAU,EAAE,CAAC,KAAK,CAAC,EAAE,CAAC,CAAC;IACvC,KAAK,EAAE;QACL,MAAM,EAAE,CAAC;QACT,UAAU,EAAE,KAAK,CAAC,OAAO,CAAC,CAAC,CAAC;KAC7B;IACD,MAAM,EAAE;QACN,YAAY,EAAE,KAAK,CAAC,OAAO,CAAC,CAAC,CAAC;KAC/B;CACF,CAAC,CAAC,CAAA;AAEH,SAAS,WAAW,CAAC,EACnB,MAAM,EACN,IAAI,EACJ,KAAK,EACL,QAAQ,EACR,OAAO,GAOR;IACC,MAAM,EAAE,OAAO,EAAE,GAAG,SAAS,EAAE,CAAA;IAC/B,MAAM,CAAC,OAAO,EAAE,UAAU,CAAC,GAAG,QAAQ,CAAC,IAAI,CAAC,CAAA;IAC5C,OAAO,CACL,oBAAC,WAAW,IAAC,GAAG,EAAE,MAAM,CAAC,KAAK,EAAE,SAAS,EAAE,OAAO,CAAC,KAAK,EAAE,KAAK,EAAE,EAAE,KAAK,EAAE;QACxE,6BAAK,KAAK,EAAE,EAAE,OAAO,EAAE,MAAM,EAAE;YAC7B,oBAAC,UAAU,QAAE,MAAM,CAAC,KAAK,CAAc;YACvC,oBAAC,OAAO,IAAC,KAAK,EAAC,sCAAsC;gBACnD,oBAAC,UAAU,IACT,OAAO,EAAE,GAAG,EAAE;wBACZ,QAAQ,CAAC,EAAE,GAAG,EAAE,MAAM,CAAC,KAAK,EAAE,GAAG,EAAE,EAAE,EAAE,CAAC,CAAA;oBAC1C,CAAC,EACD,IAAI,EAAC,OAAO;oBAEZ,oBAAC,SAAS,OAAG,CACF,CACL;YACV,oBAAC,OAAO,IAAC,KAAK,EAAC,mCAAmC;gBAChD,oBAAC,UAAU,IAAC,OAAO,EAAE,GAAG,EAAE,CAAC,UAAU,CAAC,CAAC,OAAO,CAAC,EAAE,IAAI,EAAC,OAAO,IAC1D,OAAO,CAAC,CAAC,CAAC,oBAAC,YAAY,OAAG,CAAC,CAAC,CAAC,oBAAC,OAAO,OAAG,CAC9B,CACL,CACN;QACL,OAAO,CAAC,CAAC,CAAC,CACT,oBAAC,MAAM,IACL,QAAQ,QACR,MAAM,QACN,SAAS,EAAE,OAAO,CAAC,MAAM,EACzB,KAAK,EAAE,OAAO,CAAC,MAAM,CAAC,KAAK,CAAC,EAC5B,QAAQ,EAAE,KAAK,CAAC,EAAE;gBAChB,mBAAmB;gBACnB,MAAM,EAAE,OAAO,EAAE,GAAG,KAAK,CAAC,MAAM,CAAA;gBAChC,MAAM,GAAG,GAAa,EAAE,CAAA;gBACxB,MAAM,GAAG,GAAG,OAAO,CAAC,MAAM,CAAA;gBAC1B,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,GAAG,EAAE,CAAC,EAAE,EAAE;oBAC5B,IAAI,OAAO,CAAC,CAAC,CAAC,CAAC,QAAQ,EAAE;wBACvB,GAAG,CAAC,IAAI,CAAC,OAAO,CAAC,CAAC,CAAC,CAAC,KAAK,CAAC,CAAA;qBAC3B;iBACF;gBACD,QAAQ,CAAC,EAAE,GAAG,EAAE,MAAM,CAAC,KAAK,EAAE,GAAG,EAAE,CAAC,CAAA;YACtC,CAAC,IAEA,IAAI;aACF,IAAI,CAAC,CAAC,CAAC,EAAE,CAAC,EAAE,EAAE,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,aAAa,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC;aACxC,GAAG,CAAC,CAAC,CAAC,IAAI,EAAE,KAAK,CAAC,EAAE,EAAE,CAAC,CACtB,gCAAQ,GAAG,EAAE,IAAI,EAAE,KAAK,EAAE,IAAI;YAC3B,IAAI;;YAAI,KAAK;gBACP,CACV,CAAC,CACG,CACV,CAAC,CAAC,CAAC,IAAI,CACI,CACf,CAAA;AACH,CAAC;AAED,MAAM,CAAC,OAAO,UAAU,YAAY,CAAC,EACnC,IAAI,EACJ,OAAO,EACP,QAAQ,EACR,OAAO,EACP,KAAK,GAON;IACC,MAAM,MAAM,GAAG,OAAO,CAAC,KAAK,CAAC,CAAC,CAAC,CAAA;IAC/B,MAAM,KAAK,GAAG,MAAM,CAAC,GAAG,CAAC,GAAG,EAAE,CAAC,IAAI,GAAG,EAAkB,CAAC,CAAA;IACzD,KAAK,MAAM,GAAG,IAAI,IAAI,EAAE;QACtB,KAAK,MAAM,CAAC,KAAK,EAAE,MAAM,CAAC,IAAI,MAAM,CAAC,OAAO,EAAE,EAAE;YAC9C,MAAM,GAAG,GAAG,KAAK,CAAC,KAAK,CAAC,CAAA;YACxB,MAAM,GAAG,GAAG,GAAG,GAAG,CAAC,MAAM,CAAC,KAAK,CAAC,IAAI,EAAE,EAAE,CAAA;YACxC,MAAM,GAAG,GAAG,GAAG,CAAC,GAAG,CAAC,GAAG,CAAC,CAAA;YACxB,wCAAwC;YACxC,IAAI,GAAG,EAAE;gBACP,IAAI,GAAG,KAAK,SAAS,EAAE;oBACrB,GAAG,CAAC,GAAG,CAAC,GAAG,EAAE,CAAC,CAAC,CAAA;iBAChB;qBAAM;oBACL,GAAG,CAAC,GAAG,CAAC,GAAG,EAAE,GAAG,GAAG,CAAC,CAAC,CAAA;iBACtB;aACF;SACF;KACF;IAED,OAAO,CACL,iCACG,MAAM,CAAC,GAAG,CAAC,CAAC,MAAM,EAAE,KAAK,EAAE,EAAE,CAAC,CAC7B,oBAAC,WAAW,IACV,GAAG,EAAE,MAAM,CAAC,KAAK,EACjB,IAAI,EAAE,CAAC,GAAG,KAAK,CAAC,KAAK,CAAC,CAAC,EACvB,MAAM,EAAE,MAAM,EACd,KAAK,EAAE,KAAK,EACZ,QAAQ,EAAE,QAAQ,EAClB,OAAO,EAAE,OAAO,GAChB,CACH,CAAC,CACE,CACP,CAAA;AACH,CAAC"}

package/esm/HierarchicalTrackSelectorWidget/components/faceted/FacetedSelector.js CHANGED Viewed

@@ -58,7 +58,7 @@ export default observer(function FacetedSelector({ model, }) {
         });
     }, [assemblyName, model, filterDebounced, session]);
     const filteredNonMetadataKeys = useMemo(() => nonMetadataKeys.filter(f => !hideSparse ? true : rows.map(r => r[f]).filter(f => !!f).length > 5), [hideSparse, rows]);
-    const filteredMetadataKeys = useMemo(() => [...new Set(rows.map(row => getRootKeys(row.metadata)).flat())].filter(f => !hideSparse
+    const filteredMetadataKeys = useMemo(() => [...new Set(rows.flatMap(row => getRootKeys(row.metadata)))].filter(f => !hideSparse
         ? true
         : rows.map(r => r.metadata[f]).filter(f => !!f).length > 5), [hideSparse, rows]);
     const fields = useMemo(() => {

package/esm/HierarchicalTrackSelectorWidget/components/faceted/FacetedSelector.js.map CHANGED Viewed

	@@ -1 +1 @@
1	- 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package/esm/HierarchicalTrackSelectorWidget/components/tree/HamburgerMenu.js CHANGED Viewed

@@ -29,7 +29,6 @@ export default observer(function HamburgerMenu({ model, setAssemblyIdx, }) {
     const { assemblyNames } = model;
     function breakConnection(connectionConf, deletingConnection) {
         const name = readConfObject(connectionConf, 'name');
-        // @ts-ignore
         const result = session.prepareToBreakConnection(connectionConf);
         if (result) {
             const [safelyBreakConnection, dereferenceTypeCount] = result;

package/esm/HierarchicalTrackSelectorWidget/components/tree/HamburgerMenu.js.map CHANGED Viewed

	@@ -1 +1 @@
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package/esm/HierarchicalTrackSelectorWidget/components/tree/HierarchicalHeader.js CHANGED Viewed

@@ -27,7 +27,7 @@ function HierarchicalTrackSelectorHeader({ model, setHeaderHeight, setAssemblyId
             React.createElement(ShoppingCart, { model: model }),
             React.createElement(TextField, { className: classes.searchBox, label: "Filter tracks", value: filterText, onChange: event => model.setFilterText(event.target.value), fullWidth: true, InputProps: {
                     endAdornment: (React.createElement(InputAdornment, { position: "end" },
-                        React.createElement(IconButton, { color: "secondary", onClick: () => model.clearFilterText() },
+                        React.createElement(IconButton, { onClick: () => model.clearFilterText() },
                             React.createElement(ClearIcon, null)))),
                 } }),
             React.createElement(Button, { className: classes.menuIcon, onClick: () => setFacetedOpen(true) }, "Open faceted selector")),

package/esm/HierarchicalTrackSelectorWidget/components/tree/HierarchicalHeader.js.map CHANGED Viewed

	@@ -1 +1 @@
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package/esm/HierarchicalTrackSelectorWidget/components/tree/HierarchicalTree.js CHANGED Viewed

@@ -42,7 +42,7 @@ export default observer(function HierarchicalTree({ height, tree, model, }) {
             yield getNodeData(r, 0, extra, obj);
         }
         while (true) {
-            // @ts-ignore
+            // @ts-expect-error
             const parentMeta = yield;
             for (let i = 0; i < parentMeta.node.children.length; i++) {
                 const curr = parentMeta.node.children[i];
@@ -51,7 +51,7 @@ export default observer(function HierarchicalTree({ height, tree, model, }) {
         }
     }, [tree, extra, obj]);
     useEffect(() => {
-        // @ts-ignore
+        // @ts-expect-error
         treeRef.current.recomputeTree({
             refreshNodes: true,
             useDefaultHeight: true,

package/esm/HierarchicalTrackSelectorWidget/components/tree/HierarchicalTree.js.map CHANGED Viewed

	@@ -1 +1 @@
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package/esm/HierarchicalTrackSelectorWidget/components/tree/TrackCategory.js CHANGED Viewed

@@ -10,7 +10,7 @@ import MoreHorizIcon from '@mui/icons-material/MoreHoriz';
 import { getAllChildren, treeToMap } from '../util';
 const useStyles = makeStyles()(theme => ({
     contrastColor: {
-        color: theme.palette.secondary.contrastText,
+        color: theme.palette.tertiary.contrastText,
     },
     // margin:auto 0 to center text vertically
     accordionText: {

package/esm/HierarchicalTrackSelectorWidget/components/tree/TrackCategory.js.map CHANGED Viewed

	@@ -1 +1 @@
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package/esm/HierarchicalTrackSelectorWidget/components/tree/TrackLabel.js CHANGED Viewed

@@ -9,17 +9,17 @@ import MoreHorizIcon from '@mui/icons-material/MoreHoriz';
 // locals
 import { isUnsupported } from '../util';
 import { SanitizedHTML } from '@jbrowse/core/ui';
-const useStyles = makeStyles()({
+const useStyles = makeStyles()(theme => ({
     compactCheckbox: {
         padding: 0,
     },
     checkboxLabel: {
         marginRight: 0,
         '&:hover': {
-            backgroundColor: '#eee',
+            backgroundColor: theme.palette.action.selected,
         },
     },
-});
+}));
 export default function TrackLabel({ data }) {
     var _a, _b;
     const { classes } = useStyles();
@@ -29,11 +29,11 @@ export default function TrackLabel({ data }) {
     return (React.createElement(React.Fragment, null,
         React.createElement(Tooltip, { title: description + (selected ? ' (in selection)' : ''), placement: drawerPosition === 'left' ? 'right' : 'left' },
             React.createElement(FormControlLabel, { className: classes.checkboxLabel, control: React.createElement(Checkbox, { className: classes.compactCheckbox, checked: checked, onChange: () => onChange(id), disabled: isUnsupported(name), inputProps: {
-                        // @ts-ignore
+                        // @ts-expect-error
                         'data-testid': `htsTrackEntry-${id}`,
                     } }), label: React.createElement("div", { style: { background: selected ? '#cccc' : undefined } },
                     React.createElement(SanitizedHTML, { html: name })) })),
-        React.createElement(IconButton, { onClick: e => setInfo({ target: e.currentTarget, id, conf }), style: { padding: 0 }, color: "secondary", "data-testid": `htsTrackEntryMenu-${id}` },
+        React.createElement(IconButton, { onClick: e => setInfo({ target: e.currentTarget, id, conf }), style: { padding: 0 }, "data-testid": `htsTrackEntryMenu-${id}` },
             React.createElement(MoreHorizIcon, null)),
         info ? (React.createElement(JBrowseMenu, { anchorEl: info === null || info === void 0 ? void 0 : info.target, menuItems: [
                 ...(((_b = (_a = getSession(model)).getTrackActionMenuItems) === null || _b === void 0 ? void 0 : _b.call(_a, info.conf)) || []),

package/esm/HierarchicalTrackSelectorWidget/components/tree/TrackLabel.js.map CHANGED Viewed

	@@ -1 +1 @@
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1	+ {"version":3,"file":"TrackLabel.js","sourceRoot":"","sources":["../../../../src/HierarchicalTrackSelectorWidget/components/tree/TrackLabel.tsx"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAE,EAAE,QAAQ,EAAE,MAAM,OAAO,CAAA;AACvC,OAAO,EAAE,QAAQ,EAAE,gBAAgB,EAAE,UAAU,EAAE,OAAO,EAAE,MAAM,eAAe,CAAA;AAC/E,OAAO,EAAE,UAAU,EAAE,MAAM,eAAe,CAAA;AAC1C,OAAO,WAAW,MAAM,uBAAuB,CAAA;AAC/C,OAAO,EAAE,UAAU,EAAE,MAAM,oBAAoB,CAAA;AAC/C,OAAO,EAEL,cAAc,GACf,MAAM,6BAA6B,CAAA;AAEpC,QAAQ;AACR,OAAO,aAAa,MAAM,+BAA+B,CAAA;AAEzD,SAAS;AACT,OAAO,EAAE,aAAa,EAAY,MAAM,SAAS,CAAA;AACjD,OAAO,EAAE,aAAa,EAAE,MAAM,kBAAkB,CAAA;AAEhD,MAAM,SAAS,GAAG,UAAU,EAAE,CAAC,KAAK,CAAC,EAAE,CAAC,CAAC;IACvC,eAAe,EAAE;QACf,OAAO,EAAE,CAAC;KACX;IAED,aAAa,EAAE;QACb,WAAW,EAAE,CAAC;QACd,SAAS,EAAE;YACT,eAAe,EAAE,KAAK,CAAC,OAAO,CAAC,MAAM,CAAC,QAAQ;SAC/C;KACF;CACF,CAAC,CAAC,CAAA;AAQH,MAAM,CAAC,OAAO,UAAU,UAAU,CAAC,EAAE,IAAI,EAAsB;;IAC7D,MAAM,EAAE,OAAO,EAAE,GAAG,SAAS,EAAE,CAAA;IAC/B,MAAM,EAAE,OAAO,EAAE,IAAI,EAAE,KAAK,EAAE,cAAc,EAAE,EAAE,EAAE,IAAI,EAAE,QAAQ,EAAE,QAAQ,EAAE,GAC1E,IAAI,CAAA;IACN,MAAM,CAAC,IAAI,EAAE,OAAO,CAAC,GAAG,QAAQ,EAAY,CAAA;IAC5C,MAAM,WAAW,GAAG,CAAC,IAAI,IAAI,cAAc,CAAC,IAAI,EAAE,CAAC,aAAa,CAAC,CAAC,CAAC,IAAI,EAAE,CAAA;IACzE,OAAO,CACL;QACE,oBAAC,OAAO,IACN,KAAK,EAAE,WAAW,GAAG,CAAC,QAAQ,CAAC,CAAC,CAAC,iBAAiB,CAAC,CAAC,CAAC,EAAE,CAAC,EACxD,SAAS,EAAE,cAAc,KAAK,MAAM,CAAC,CAAC,CAAC,OAAO,CAAC,CAAC,CAAC,MAAM;YAEvD,oBAAC,gBAAgB,IACf,SAAS,EAAE,OAAO,CAAC,aAAa,EAChC,OAAO,EACL,oBAAC,QAAQ,IACP,SAAS,EAAE,OAAO,CAAC,eAAe,EAClC,OAAO,EAAE,OAAO,EAChB,QAAQ,EAAE,GAAG,EAAE,CAAC,QAAQ,CAAC,EAAE,CAAC,EAC5B,QAAQ,EAAE,aAAa,CAAC,IAAI,CAAC,EAC7B,UAAU,EAAE;wBACV,mBAAmB;wBACnB,aAAa,EAAE,iBAAiB,EAAE,EAAE;qBACrC,GACD,EAEJ,KAAK,EACH,6BAAK,KAAK,EAAE,EAAE,UAAU,EAAE,QAAQ,CAAC,CAAC,CAAC,OAAO,CAAC,CAAC,CAAC,SAAS,EAAE;oBACxD,oBAAC,aAAa,IAAC,IAAI,EAAE,IAAI,GAAI,CACzB,GAER,CACM;QACV,oBAAC,UAAU,IACT,OAAO,EAAE,CAAC,CAAC,EAAE,CAAC,OAAO,CAAC,EAAE,MAAM,EAAE,CAAC,CAAC,aAAa,EAAE,EAAE,EAAE,IAAI,EAAE,CAAC,EAC5D,KAAK,EAAE,EAAE,OAAO,EAAE,CAAC,EAAE,iBACR,qBAAqB,EAAE,EAAE;YAEtC,oBAAC,aAAa,OAAG,CACN;QAEZ,IAAI,CAAC,CAAC,CAAC,CACN,oBAAC,WAAW,IACV,QAAQ,EAAE,IAAI,aAAJ,IAAI,uBAAJ,IAAI,CAAE,MAAM,EACtB,SAAS,EAAE;gBACT,GAAG,CAAC,CAAA,MAAA,MAAA,UAAU,CAAC,KAAK,CAAC,EAAC,uBAAuB,mDAAG,IAAI,CAAC,IAAI,CAAC,KAAI,EAAE,CAAC;gBACjE;oBACE,KAAK,EAAE,kBAAkB;oBACzB,OAAO,EAAE,GAAG,EAAE,CAAC,KAAK,CAAC,cAAc,CAAC,CAAC,IAAI,CAAC,IAAI,CAAC,CAAC;iBACjD;gBACD,GAAG,CAAC,QAAQ;oBACV,CAAC,CAAC;wBACE;4BACE,KAAK,EAAE,uBAAuB;4BAC9B,OAAO,EAAE,GAAG,EAAE,CAAC,KAAK,CAAC,mBAAmB,CAAC,CAAC,IAAI,CAAC,IAAI,CAAC,CAAC;yBACtD;qBACF;oBACH,CAAC,CAAC,EAAE,CAAC;aACR,EACD,eAAe,EAAE,CAAC,MAAM,EAAE,QAAQ,EAAE,EAAE;gBACpC,QAAQ,EAAE,CAAA;gBACV,OAAO,CAAC,SAAS,CAAC,CAAA;YACpB,CAAC,EACD,IAAI,EAAE,OAAO,CAAC,IAAI,CAAC,EACnB,OAAO,EAAE,GAAG,EAAE,CAAC,OAAO,CAAC,SAAS,CAAC,GACjC,CACH,CAAC,CAAC,CAAC,IAAI,CACP,CACJ,CAAA;AACH,CAAC"}

package/esm/HierarchicalTrackSelectorWidget/components/util.js CHANGED Viewed

@@ -1,5 +1,5 @@
 export function getAllChildren(subtree) {
-    // @ts-ignore
+    // @ts-expect-error
     return ((subtree === null || subtree === void 0 ? void 0 : subtree.children.map(t => t.children.length ? getAllChildren(t) : t.conf)) || []).flat(Infinity);
 }
 export function treeToMap(tree, map = new Map()) {

package/esm/HierarchicalTrackSelectorWidget/components/util.js.map CHANGED Viewed

	@@ -1 +1 @@
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package/esm/HierarchicalTrackSelectorWidget/index.d.ts CHANGED Viewed

@@ -1,7 +1,5 @@
-import stateModelFactory, { HierarchicalTrackSelectorModel } from './model';
-import configSchema from './configSchema';
 import PluginManager from '@jbrowse/core/PluginManager';
-export { stateModelFactory, configSchema };
-export type { HierarchicalTrackSelectorModel };
 declare const _default: (pluginManager: PluginManager) => void;
 export default _default;
+export { type HierarchicalTrackSelectorModel, default as stateModelFactory, } from './model';
+export { default as configSchema } from './configSchema';

package/esm/HierarchicalTrackSelectorWidget/index.js CHANGED Viewed

@@ -2,7 +2,6 @@ import stateModelFactory from './model';
 import configSchema from './configSchema';
 import { WidgetType } from '@jbrowse/core/pluggableElementTypes';
 import { lazy } from 'react';
-export { stateModelFactory, configSchema };
 export default (pluginManager) => {
     pluginManager.addWidgetType(() => {
         return new WidgetType({
@@ -14,4 +13,6 @@ export default (pluginManager) => {
         });
     });
 };
+export { default as stateModelFactory, } from './model';
+export { default as configSchema } from './configSchema';
 //# sourceMappingURL=index.js.map

package/esm/HierarchicalTrackSelectorWidget/index.js.map CHANGED Viewed

	@@ -1 +1 @@
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package/esm/HierarchicalTrackSelectorWidget/model.d.ts CHANGED Viewed

@@ -2,7 +2,7 @@ import { Instance } from 'mobx-state-tree';
 import { AnyConfigurationModel } from '@jbrowse/core/configuration';
 import { AbstractSessionModel } from '@jbrowse/core/util';
 import PluginManager from '@jbrowse/core/PluginManager';
-export declare function matches(query: string, conf: AnyConfigurationModel, session: AbstractSessionModel): any;
+export declare function matches(query: string, conf: AnyConfigurationModel, session: AbstractSessionModel): boolean;
 export type TreeNode = {
     name: string;
     id: string;

package/esm/HierarchicalTrackSelectorWidget/model.js CHANGED Viewed

@@ -4,7 +4,15 @@ import { dedupe, getSession, getEnv, } from '@jbrowse/core/util';
 import { getTrackName } from '@jbrowse/core/util/tracks';
 import { ElementId } from '@jbrowse/core/util/types/mst';
 function hasAnyOverlap(a1 = [], a2 = []) {
-    return !!a1.find(value => a2.includes(value));
+    // shortcut case is that arrays are single entries, and are equal
+    // long case is that we use a set
+    if (a1[0] === a2[0]) {
+        return true;
+    }
+    else {
+        const s1 = new Set(a1);
+        return a2.some(a => s1.has(a));
+    }
 }
 export function matches(query, conf, session) {
     const categories = readConfObject(conf, 'category');
@@ -70,7 +78,7 @@ export function generateHierarchy(model, trackConfigurations, collapsed, extra)
             id: conf.trackId,
             name: getTrackName(conf, session),
             conf,
-            checked: !!tracks.find(f => f.configuration === conf),
+            checked: tracks.some(f => f.configuration === conf),
             children: [],
         });
     });
@@ -124,7 +132,7 @@ export default function stateTreeFactory(pluginManager) {
                 return undefined;
             }
             for (const display of trackConf.displays) {
-                if (viewType.displayTypes.find(d => d.name === display.type)) {
+                if (viewType.displayTypes.some(d => d.name === display.type)) {
                     return trackConf;
                 }
             }
@@ -143,9 +151,10 @@ export default function stateTreeFactory(pluginManager) {
             const refseq = self.getRefSeqTrackConf(assemblyName);
             // filter out tracks that don't match the current assembly (check all
             // assembly aliases) and display types
-            return (refseq ? [refseq] : []).concat([
+            return [
+                ...(refseq ? [refseq] : []),
                 ...filterTracks(tracks, self, assemblyName),
-            ]);
+            ];
         },
         get assemblyNames() {
             var _a;
@@ -170,7 +179,7 @@ export default function stateTreeFactory(pluginManager) {
             const assembly = assemblyManager.get(assemblyName);
             const conns = (assembly &&
                 (connectionInstances === null || connectionInstances === void 0 ? void 0 : connectionInstances.map(c => ({
-                    // @ts-ignore
+                    // @ts-expect-error
                     id: getSnapshot(c).configuration,
                     name: getConf(c, 'name'),
                     children: this.connectionHierarchy(assemblyName, c),

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1	+ 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package/esm/PluginStoreWidget/components/InstalledPluginsList.js CHANGED Viewed

@@ -4,11 +4,11 @@ import { List, Typography } from '@mui/material';
 import InstalledPlugin from './InstalledPlugin';
 function InstalledPluginsList({ pluginManager, model, }) {
     const { plugins } = pluginManager;
-    const corePlugins = plugins
+    const corePlugins = new Set(plugins
         .filter(p => { var _a; return (_a = pluginManager.pluginMetadata[p.name]) === null || _a === void 0 ? void 0 : _a.isCore; })
-        .map(p => p.name);
-    const externalPlugins = plugins.filter(plugin => !corePlugins.includes(plugin.name));
-    return (React.createElement(List, null, externalPlugins.length ? (externalPlugins
+        .map(p => p.name));
+    const externalPlugins = plugins.filter(plugin => !corePlugins.has(plugin.name));
+    return (React.createElement(List, null, externalPlugins.length > 0 ? (externalPlugins
         .filter(plugin => plugin.name.toLowerCase().includes(model.filterText.toLowerCase()))
         .map(plugin => (React.createElement(InstalledPlugin, { key: plugin.name, plugin: plugin, model: model, pluginManager: pluginManager })))) : (React.createElement(Typography, null, "No plugins currently installed"))));
 }

package/esm/PluginStoreWidget/components/InstalledPluginsList.js.map CHANGED Viewed

	@@ -1 +1 @@
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1	+ {"version":3,"file":"InstalledPluginsList.js","sourceRoot":"","sources":["../../../src/PluginStoreWidget/components/InstalledPluginsList.tsx"],"names":[],"mappings":"AAAA,OAAO,KAAK,MAAM,OAAO,CAAA;AACzB,OAAO,EAAE,QAAQ,EAAE,MAAM,YAAY,CAAA;AACrC,OAAO,EAAE,IAAI,EAAE,UAAU,EAAE,MAAM,eAAe,CAAA;AAGhD,OAAO,eAAe,MAAM,mBAAmB,CAAA;AAE/C,SAAS,oBAAoB,CAAC,EAC5B,aAAa,EACb,KAAK,GAIN;IACC,MAAM,EAAE,OAAO,EAAE,GAAG,aAAa,CAAA;IAEjC,MAAM,WAAW,GAAG,IAAI,GAAG,CACzB,OAAO;SACJ,MAAM,CAAC,CAAC,CAAC,EAAE,WAAC,OAAA,MAAA,aAAa,CAAC,cAAc,CAAC,CAAC,CAAC,IAAI,CAAC,0CAAE,MAAM,CAAA,EAAA,CAAC;SACzD,GAAG,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,IAAI,CAAC,CACpB,CAAA;IAED,MAAM,eAAe,GAAG,OAAO,CAAC,MAAM,CACpC,MAAM,CAAC,EAAE,CAAC,CAAC,WAAW,CAAC,GAAG,CAAC,MAAM,CAAC,IAAI,CAAC,CACxC,CAAA;IAED,OAAO,CACL,oBAAC,IAAI,QACF,eAAe,CAAC,MAAM,GAAG,CAAC,CAAC,CAAC,CAAC,CAC5B,eAAe;SACZ,MAAM,CAAC,MAAM,CAAC,EAAE,CACf,MAAM,CAAC,IAAI,CAAC,WAAW,EAAE,CAAC,QAAQ,CAAC,KAAK,CAAC,UAAU,CAAC,WAAW,EAAE,CAAC,CACnE;SACA,GAAG,CAAC,MAAM,CAAC,EAAE,CAAC,CACb,oBAAC,eAAe,IACd,GAAG,EAAE,MAAM,CAAC,IAAI,EAChB,MAAM,EAAE,MAAM,EACd,KAAK,EAAE,KAAK,EACZ,aAAa,EAAE,aAAa,GAC5B,CACH,CAAC,CACL,CAAC,CAAC,CAAC,CACF,oBAAC,UAAU,yCAA4C,CACxD,CACI,CACR,CAAA;AACH,CAAC;AAED,eAAe,QAAQ,CAAC,oBAAoB,CAAC,CAAA"}

package/esm/PluginStoreWidget/components/PluginCard.d.ts CHANGED Viewed

@@ -1,10 +1,9 @@
 /// <reference types="react" />
 import { JBrowsePlugin } from '@jbrowse/core/util/types';
 import { PluginStoreModel } from '../model';
-declare function PluginCard({ plugin, model, adminMode, }: {
+declare const _default: ({ plugin, model, adminMode, }: {
     plugin: JBrowsePlugin;
     model: PluginStoreModel;
     adminMode: boolean;
-}): JSX.Element;
-declare const _default: typeof PluginCard;
+}) => JSX.Element;
 export default _default;

package/esm/PluginStoreWidget/components/PluginCard.js CHANGED Viewed

@@ -9,7 +9,7 @@ import { makeStyles } from 'tss-react/mui';
 import PersonIcon from '@mui/icons-material/Person';
 import AddIcon from '@mui/icons-material/Add';
 import CheckIcon from '@mui/icons-material/Check';
-const useStyles = makeStyles()(() => ({
+const useStyles = makeStyles()({
     card: {
         margin: '1em',
     },
@@ -25,12 +25,13 @@ const useStyles = makeStyles()(() => ({
         alignItems: 'center',
         margin: '0.4em 0em',
     },
-}));
-function PluginCard({ plugin, model, adminMode, }) {
+});
+export default observer(function PluginCard({ plugin, model, adminMode, }) {
     const { classes } = useStyles();
     const session = getSession(model);
     const { pluginManager } = getEnv(model);
-    const isInstalled = Boolean(pluginManager.runtimePluginDefinitions.find(def => def.url === plugin.url));
+    const { runtimePluginDefinitions } = pluginManager;
+    const isInstalled = runtimePluginDefinitions.some(d => d.url === plugin.url);
     const [tempDisabled, setTempDisabled] = useState(false);
     const disableButton = isInstalled || tempDisabled;
     // eslint-disable-next-line @typescript-eslint/no-explicit-any
@@ -47,7 +48,7 @@ function PluginCard({ plugin, model, adminMode, }) {
             React.createElement(Typography, { className: classes.bold }, "Description:"),
             React.createElement(Typography, null, plugin.description)),
         React.createElement(CardActions, null,
-            React.createElement(Button, { variant: "contained", color: "primary", disabled: disableButton, startIcon: isInstalled ? React.createElement(CheckIcon, null) : React.createElement(AddIcon, null), onClick: () => {
+            React.createElement(Button, { variant: "contained", disabled: disableButton, startIcon: isInstalled ? React.createElement(CheckIcon, null) : React.createElement(AddIcon, null), onClick: () => {
                     if (adminMode) {
                         jbrowse.addPlugin({ name: plugin.name, url: plugin.url });
                     }
@@ -56,6 +57,5 @@ function PluginCard({ plugin, model, adminMode, }) {
                     }
                     setTempDisabled(true);
                 } }, isInstalled ? 'Installed' : 'Install'))));
-}
-export default observer(PluginCard);
+});
 //# sourceMappingURL=PluginCard.js.map

package/esm/PluginStoreWidget/components/PluginCard.js.map CHANGED Viewed

	@@ -1 +1 @@
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package/esm/PluginStoreWidget/components/PluginStoreWidget.js CHANGED Viewed

@@ -18,7 +18,7 @@ const useStyles = makeStyles()(theme => ({
         margin: theme.spacing(1),
     },
     expandIcon: {
-        color: '#fff',
+        color: theme.palette.tertiary.contrastText,
     },
     adminBadge: {
         margin: '0.5em',
@@ -74,11 +74,11 @@ function PluginStoreWidget({ model }) {
                     React.createElement("code", null, "admin-server"),
                     ". Any changes you make will be saved to your configuration file. You also have the ability to add custom plugins that are not in the store."))),
             React.createElement("div", { className: classes.customPluginButton },
-                React.createElement(Button, { variant: "contained", color: "primary", onClick: () => setCustomPluginFormOpen(true) }, "Add custom plugin")),
+                React.createElement(Button, { variant: "contained", onClick: () => setCustomPluginFormOpen(true) }, "Add custom plugin")),
             React.createElement(CustomPluginForm, { open: customPluginFormOpen, onClose: () => setCustomPluginFormOpen(false), model: model }))),
         React.createElement(TextField, { label: "Filter plugins", value: model.filterText, onChange: event => model.setFilterText(event.target.value), fullWidth: true, InputProps: {
                 endAdornment: (React.createElement(InputAdornment, { position: "end" },
-                    React.createElement(IconButton, { color: "secondary", onClick: () => model.clearFilterText() },
+                    React.createElement(IconButton, { onClick: () => model.clearFilterText() },
                         React.createElement(ClearIcon, null)))),
             } }),
         React.createElement(Accordion, { defaultExpanded: true },

package/esm/PluginStoreWidget/components/PluginStoreWidget.js.map CHANGED Viewed

	@@ -1 +1 @@
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