npm - @jbrowse/plugin-data-management - Versions diffs - 2.2.2 → 2.3.0 - Mend

@jbrowse/plugin-data-management 2.2.2 → 2.3.0

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.

Files changed (73) hide show

package/esm/AddTrackWidget/components/ConfirmTrack.js CHANGED Viewed

@@ -1,169 +1,36 @@
 import React, { useEffect, useState } from 'react';
-import { Card, CardContent, Checkbox, FormControl, FormControlLabel, IconButton, InputLabel, InputAdornment, ListSubheader, Link, List, ListItem, MenuItem, Paper, TextField, Typography, } from '@mui/material';
+import { Checkbox, FormControl, FormControlLabel, Link, TextField, Typography, } from '@mui/material';
 import { makeStyles } from 'tss-react/mui';
-import { readConfObject } from '@jbrowse/core/configuration';
-import { supportedIndexingAdapters, getSession, getEnv, isElectron, } from '@jbrowse/core/util';
+import { supportedIndexingAdapters, getSession, isElectron, } from '@jbrowse/core/util';
 import { observer } from 'mobx-react';
 import { UNKNOWN } from '@jbrowse/core/util/tracks';
-// icons
-import DeleteIcon from '@mui/icons-material/Delete';
-import AddIcon from '@mui/icons-material//Add';
+import { AssemblySelector } from '@jbrowse/core/ui';
+import TextIndexingConfig from './TextIndexingConfig';
+import TrackTypeSelector from './TrackTypeSelector';
+import TrackAdapterSelector from './TrackAdapterSelector';
 const useStyles = makeStyles()(theme => ({
     spacing: {
         marginBottom: theme.spacing(3),
     },
-    paper: {
-        display: 'flex',
-        flexDirection: 'column',
-        padding: theme.spacing(1),
-    },
-    spacer: {
-        height: theme.spacing(8),
-    },
-    card: {
-        marginTop: theme.spacing(1),
-    },
 }));
 function StatusMessage({ trackAdapter, trackType, }) {
-    var _a;
     const { classes } = useStyles();
-    return trackAdapter.type === 'SNPCoverageAdapter' ? (React.createElement(Typography, { className: classes.spacing },
+    const { type, subadapter } = trackAdapter;
+    return type === 'SNPCoverageAdapter' ? (React.createElement(Typography, { className: classes.spacing },
         "Selected ",
         React.createElement("code", null, trackType),
-        ". Using adapter",
-        ' ',
-        React.createElement("code", null, trackAdapter.type),
-        " with subadapter",
-        ' ',
-        React.createElement("code", null, (_a = trackAdapter.subadapter) === null || _a === void 0 ? void 0 : _a.type),
+        ". Using adapter ",
+        React.createElement("code", null, type),
+        " with subadapter ",
+        React.createElement("code", null, subadapter === null || subadapter === void 0 ? void 0 : subadapter.type),
         ". Please enter a track name and, if necessary, update the track type.")) : (React.createElement(Typography, { className: classes.spacing },
         "Using adapter ",
-        React.createElement("code", null, trackAdapter.type),
+        React.createElement("code", null, type),
         " and guessing track type",
         ' ',
         React.createElement("code", null, trackType),
         ". Please enter a track name and, if necessary, update the track type."));
 }
-/**
- * categorizeAdapters takes a list of adapters and sorts their menu item elements under an appropriate ListSubheader
- *  element. In this way, adapters that are from external plugins can have headers that differentiate them from the
- *  out-of-the-box plugins.
- * @param adaptersList - a list of adapters found in the PluginManager
- * @returns a series of JSX elements that are ListSubheaders followed by the adapters
- *   found under that subheader
- */
-function categorizeAdapters(adaptersList) {
-    let currentCategory = '';
-    // eslint-disable-next-line @typescript-eslint/no-explicit-any
-    const items = [];
-    adaptersList.forEach(adapter => {
-        var _a, _b, _c, _d, _e, _f, _g, _h;
-        if ((_a = adapter.adapterMetadata) === null || _a === void 0 ? void 0 : _a.category) {
-            if (currentCategory !== ((_b = adapter.adapterMetadata) === null || _b === void 0 ? void 0 : _b.category)) {
-                currentCategory = (_c = adapter.adapterMetadata) === null || _c === void 0 ? void 0 : _c.category;
-                items.push(React.createElement(ListSubheader, { key: (_d = adapter.adapterMetadata) === null || _d === void 0 ? void 0 : _d.category, value: (_e = adapter.adapterMetadata) === null || _e === void 0 ? void 0 : _e.category }, (_f = adapter.adapterMetadata) === null || _f === void 0 ? void 0 : _f.category));
-            }
-            items.push(React.createElement(MenuItem, { key: adapter.name, value: adapter.name }, ((_g = adapter.adapterMetadata) === null || _g === void 0 ? void 0 : _g.displayName)
-                ? (_h = adapter.adapterMetadata) === null || _h === void 0 ? void 0 : _h.displayName
-                : adapter.name));
-        }
-    });
-    return items;
-}
-function getAdapterTypes(pluginManager) {
-    return pluginManager.getElementTypesInGroup('adapter');
-}
-function getTrackTypes(pluginManager) {
-    return pluginManager.getElementTypesInGroup('track');
-}
-const TextIndexingConfig = observer(({ model }) => {
-    const { classes } = useStyles();
-    const [value1, setValue1] = useState('');
-    const [value2, setValue2] = useState('');
-    const [attributes, setAttributes] = useState(['Name', 'ID']);
-    const [exclude, setExclude] = useState(['CDS', 'exon']);
-    const sections = [
-        {
-            label: 'Indexing attributes',
-            values: attributes,
-        },
-        {
-            label: 'Feature types to exclude',
-            values: exclude,
-        },
-    ];
-    useEffect(() => {
-        model.setTextIndexingConf({ attributes, exclude });
-    }, [model, attributes, exclude]);
-    return (React.createElement(Paper, { className: classes.paper },
-        React.createElement(InputLabel, null, "Indexing configuration"),
-        sections.map((section, index) => (React.createElement(Card, { raised: true, key: section.label, className: classes.card },
-            React.createElement(CardContent, null,
-                React.createElement(InputLabel, null, section.label),
-                React.createElement(List, { disablePadding: true },
-                    section.values.map((val, idx) => (React.createElement(ListItem, { key: idx, disableGutters: true },
-                        React.createElement(TextField, { value: val, InputProps: {
-                                endAdornment: (React.createElement(InputAdornment, { position: "end" },
-                                    React.createElement(IconButton, { color: "secondary", onClick: () => {
-                                            const newAttr = section.values.filter((a, i) => {
-                                                return i !== idx;
-                                            });
-                                            index === 0
-                                                ? setAttributes(newAttr)
-                                                : setExclude(newAttr);
-                                        } },
-                                        React.createElement(DeleteIcon, null)))),
-                            } })))),
-                    React.createElement(ListItem, { disableGutters: true },
-                        React.createElement(TextField, { value: index === 0 ? value1 : value2, placeholder: "add new", onChange: event => {
-                                index === 0
-                                    ? setValue1(event.target.value)
-                                    : setValue2(event.target.value);
-                            }, InputProps: {
-                                endAdornment: (React.createElement(InputAdornment, { position: "end" },
-                                    React.createElement(IconButton, { onClick: () => {
-                                            if (index === 0) {
-                                                const newAttr = attributes;
-                                                newAttr.push(value1);
-                                                setAttributes(newAttr);
-                                                setValue1('');
-                                            }
-                                            else {
-                                                const newFeat = exclude;
-                                                newFeat.push(value2);
-                                                setExclude(newFeat);
-                                                setValue2('');
-                                            }
-                                        }, disabled: index === 0 ? value1 === '' : value2 === '', color: "secondary", "data-testid": `stringArrayAdd-Feat` },
-                                        React.createElement(AddIcon, null)))),
-                            } })))))))));
-});
-const TrackAdapterSelector = observer(({ model }) => {
-    const { classes } = useStyles();
-    const { trackAdapter } = model;
-    const { pluginManager } = getEnv(model);
-    const adapters = getAdapterTypes(pluginManager);
-    return (React.createElement(TextField, { className: classes.spacing, value: (trackAdapter === null || trackAdapter === void 0 ? void 0 : trackAdapter.type) !== 'UNKNOWN' ? trackAdapter === null || trackAdapter === void 0 ? void 0 : trackAdapter.type : '', label: "adapterType", helperText: "Select an adapter type", select: true, fullWidth: true, onChange: event => model.setAdapterHint(event.target.value), SelectProps: {
-            // @ts-ignore
-            SelectDisplayProps: { 'data-testid': 'adapterTypeSelect' },
-        } },
-        adapters
-            // Excludes any adapter with the 'adapterMetadata.hiddenFromGUI' property, and anything with the 'adapterMetadata.category' property
-            .filter(elt => {
-            var _a, _b;
-            return !((_a = elt.adapterMetadata) === null || _a === void 0 ? void 0 : _a.hiddenFromGUI) &&
-                !((_b = elt.adapterMetadata) === null || _b === void 0 ? void 0 : _b.category);
-        })
-            .map(elt => {
-            var _a, _b;
-            return (React.createElement(MenuItem, { key: elt.name, value: elt.name }, ((_a = elt.adapterMetadata) === null || _a === void 0 ? void 0 : _a.displayName)
-                ? (_b = elt.adapterMetadata) === null || _b === void 0 ? void 0 : _b.displayName
-                : elt.name));
-        }),
-        // adapters with the 'adapterMetadata.category' property are categorized
-        // by the value of the property here
-        categorizeAdapters(adapters.filter(elt => { var _a; return !((_a = elt.adapterMetadata) === null || _a === void 0 ? void 0 : _a.hiddenFromGUI); }))));
-});
 function UnknownAdapterPrompt({ model }) {
     const { classes } = useStyles();
     return (React.createElement(React.Fragment, null,
@@ -179,32 +46,16 @@ function UnknownAdapterPrompt({ model }) {
             "and add a feature request for this data type."),
         React.createElement(TrackAdapterSelector, { model: model })));
 }
-const TrackTypeSelector = observer(({ model }) => {
-    const { classes } = useStyles();
-    const session = getSession(model);
-    const { trackType } = model;
-    const trackTypes = getTrackTypes(getEnv(session).pluginManager);
-    return (React.createElement(TextField, { className: classes.spacing, value: trackType, label: "trackType", helperText: "Select a track type", select: true, fullWidth: true, onChange: event => {
-            model.setTrackType(event.target.value);
-        }, SelectProps: {
-            // @ts-ignore
-            SelectDisplayProps: { 'data-testid': 'trackTypeSelect' },
-        } }, trackTypes.map(({ name }) => (React.createElement(MenuItem, { key: name, value: name }, name)))));
-});
-const TrackAssemblySelector = observer(({ model }) => {
-    const session = getSession(model);
-    const { assembly } = model;
-    return (React.createElement(TextField, { value: assembly, label: "assemblyName", helperText: "Assembly to which the track will be added", select: true, fullWidth: true, onChange: event => model.setAssembly(event.target.value), SelectProps: {
-            // @ts-ignore
-            SelectDisplayProps: { 'data-testid': 'assemblyNameSelect' },
-        } }, session.assemblies
-        .map(conf => readConfObject(conf, 'name'))
-        .map(name => (React.createElement(MenuItem, { key: name, value: name }, name)))));
-});
-function ConfirmTrack({ model }) {
+export default observer(function ConfirmTrack({ model, }) {
     const { classes } = useStyles();
     const [check, setCheck] = useState(true);
+    const session = getSession(model);
     const { trackName, trackAdapter, trackType, warningMessage, adapterHint } = model;
+    useEffect(() => {
+        if (adapterHint === '' && trackAdapter) {
+            model.setAdapterHint(trackAdapter.type);
+        }
+    }, [adapterHint, trackAdapter, trackAdapter === null || trackAdapter === void 0 ? void 0 : trackAdapter.type, model]);
     if (model.unsupported) {
         return (React.createElement(Typography, { className: classes.spacing },
             "This version of JBrowse cannot display data of this type. It is possible, however, that there is a newer version that can display them. You can",
@@ -220,9 +71,6 @@ function ConfirmTrack({ model }) {
     if ((trackAdapter === null || trackAdapter === void 0 ? void 0 : trackAdapter.type) === UNKNOWN) {
         return React.createElement(UnknownAdapterPrompt, { model: model });
     }
-    if (adapterHint === '' && trackAdapter) {
-        model.setAdapterHint(trackAdapter.type);
-    }
     if (!(trackAdapter === null || trackAdapter === void 0 ? void 0 : trackAdapter.type)) {
         return React.createElement(Typography, null, "Could not recognize this data type.");
     }
@@ -233,13 +81,18 @@ function ConfirmTrack({ model }) {
         React.createElement(TextField, { className: classes.spacing, label: "trackName", helperText: "A name for this track", fullWidth: true, value: trackName, onChange: event => model.setTrackName(event.target.value), inputProps: { 'data-testid': 'trackNameInput' } }),
         React.createElement(TrackAdapterSelector, { model: model }),
         React.createElement(TrackTypeSelector, { model: model }),
-        React.createElement(TrackAssemblySelector, { model: model }),
+        React.createElement(AssemblySelector, { session: session, helperText: "Select assembly to add track to", selected: model.assembly, onChange: asm => model.setAssembly(asm), TextFieldProps: {
+                fullWidth: true,
+                SelectProps: {
+                    // @ts-ignore
+                    SelectDisplayProps: { 'data-testid': 'assemblyNameSelect' },
+                },
+            } }),
         isElectron && supportedForIndexing && (React.createElement(FormControl, null,
             React.createElement(FormControlLabel, { label: 'Index track for text searching?', control: React.createElement(Checkbox, { checked: check, onChange: e => {
                         setCheck(e.target.checked);
                         model.setTextIndexTrack(e.target.checked);
                     } }) }))),
         isElectron && check && supportedForIndexing ? (React.createElement(TextIndexingConfig, { model: model })) : null));
-}
-export default observer(ConfirmTrack);
+});
 //# sourceMappingURL=ConfirmTrack.js.map

package/esm/AddTrackWidget/components/ConfirmTrack.js.map CHANGED Viewed

	@@ -1 +1 @@
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package/esm/AddTrackWidget/components/DefaultAddTrackWorkflow.js.map CHANGED Viewed

	@@ -1 +1 @@
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package/esm/AddTrackWidget/components/TextIndexingConfig.d.ts ADDED Viewed

@@ -0,0 +1,6 @@
+/// <reference types="react" />
+import { AddTrackModel } from '../model';
+declare const TextIndexingConfig: ({ model }: {
+    model: AddTrackModel;
+}) => JSX.Element;
+export default TextIndexingConfig;

package/esm/AddTrackWidget/components/TextIndexingConfig.js ADDED Viewed

@@ -0,0 +1,81 @@
+import React, { useEffect, useState } from 'react';
+import { Card, CardContent, IconButton, InputLabel, InputAdornment, List, ListItem, Paper, TextField, } from '@mui/material';
+import { makeStyles } from 'tss-react/mui';
+import { observer } from 'mobx-react';
+// icons
+import DeleteIcon from '@mui/icons-material/Delete';
+import AddIcon from '@mui/icons-material/Add';
+const useStyles = makeStyles()(theme => ({
+    paper: {
+        display: 'flex',
+        flexDirection: 'column',
+        padding: theme.spacing(1),
+    },
+    card: {
+        marginTop: theme.spacing(1),
+    },
+}));
+const TextIndexingConfig = observer(({ model }) => {
+    const { classes } = useStyles();
+    const [value1, setValue1] = useState('');
+    const [value2, setValue2] = useState('');
+    const [attributes, setAttributes] = useState(['Name', 'ID']);
+    const [exclude, setExclude] = useState(['CDS', 'exon']);
+    const sections = [
+        {
+            label: 'Indexing attributes',
+            values: attributes,
+        },
+        {
+            label: 'Feature types to exclude',
+            values: exclude,
+        },
+    ];
+    useEffect(() => {
+        model.setTextIndexingConf({ attributes, exclude });
+    }, [model, attributes, exclude]);
+    return (React.createElement(Paper, { className: classes.paper },
+        React.createElement(InputLabel, null, "Indexing configuration"),
+        sections.map((section, index) => (React.createElement(Card, { raised: true, key: section.label, className: classes.card },
+            React.createElement(CardContent, null,
+                React.createElement(InputLabel, null, section.label),
+                React.createElement(List, { disablePadding: true },
+                    section.values.map((val, idx) => (React.createElement(ListItem, { key: idx, disableGutters: true },
+                        React.createElement(TextField, { value: val, InputProps: {
+                                endAdornment: (React.createElement(InputAdornment, { position: "end" },
+                                    React.createElement(IconButton, { color: "secondary", onClick: () => {
+                                            const newAttr = section.values.filter((a, i) => {
+                                                return i !== idx;
+                                            });
+                                            index === 0
+                                                ? setAttributes(newAttr)
+                                                : setExclude(newAttr);
+                                        } },
+                                        React.createElement(DeleteIcon, null)))),
+                            } })))),
+                    React.createElement(ListItem, { disableGutters: true },
+                        React.createElement(TextField, { value: index === 0 ? value1 : value2, placeholder: "add new", onChange: event => {
+                                index === 0
+                                    ? setValue1(event.target.value)
+                                    : setValue2(event.target.value);
+                            }, InputProps: {
+                                endAdornment: (React.createElement(InputAdornment, { position: "end" },
+                                    React.createElement(IconButton, { onClick: () => {
+                                            if (index === 0) {
+                                                const newAttr = attributes;
+                                                newAttr.push(value1);
+                                                setAttributes(newAttr);
+                                                setValue1('');
+                                            }
+                                            else {
+                                                const newFeat = exclude;
+                                                newFeat.push(value2);
+                                                setExclude(newFeat);
+                                                setValue2('');
+                                            }
+                                        }, disabled: index === 0 ? value1 === '' : value2 === '', color: "secondary", "data-testid": `stringArrayAdd-Feat` },
+                                        React.createElement(AddIcon, null)))),
+                            } })))))))));
+});
+export default TextIndexingConfig;
+//# sourceMappingURL=TextIndexingConfig.js.map

package/esm/AddTrackWidget/components/TextIndexingConfig.js.map ADDED Viewed

@@ -0,0 +1 @@

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package/esm/AddTrackWidget/components/TrackAdapterSelector.d.ts ADDED Viewed

@@ -0,0 +1,6 @@
+/// <reference types="react" />
+import { AddTrackModel } from '../model';
+declare const TrackAdapterSelector: ({ model }: {
+    model: AddTrackModel;
+}) => JSX.Element;
+export default TrackAdapterSelector;

package/esm/AddTrackWidget/components/TrackAdapterSelector.js ADDED Viewed

@@ -0,0 +1,45 @@
+import React from 'react';
+import { ListSubheader, MenuItem, TextField } from '@mui/material';
+import { makeStyles } from 'tss-react/mui';
+import { getEnv } from '@jbrowse/core/util';
+import { observer } from 'mobx-react';
+const useStyles = makeStyles()(theme => ({
+    spacing: {
+        marginBottom: theme.spacing(3),
+    },
+}));
+// collate adapters into a map with
+// key: category
+// value: array of adapters with that category
+function categorizeAdapters(adaptersList) {
+    const map = {};
+    adaptersList.forEach(adapter => {
+        var _a;
+        const key = ((_a = adapter.adapterMetadata) === null || _a === void 0 ? void 0 : _a.category) || 'Default';
+        if (!map[key]) {
+            map[key] = [];
+        }
+        map[key].push(adapter);
+    });
+    return map;
+}
+const TrackAdapterSelector = observer(({ model }) => {
+    const { classes } = useStyles();
+    const { trackAdapter } = model;
+    const { pluginManager } = getEnv(model);
+    return (React.createElement(TextField, { className: classes.spacing, value: (trackAdapter === null || trackAdapter === void 0 ? void 0 : trackAdapter.type) !== 'UNKNOWN' ? trackAdapter === null || trackAdapter === void 0 ? void 0 : trackAdapter.type : '', label: "Adapter type", variant: "outlined", helperText: "Select an adapter type", select: true, fullWidth: true, onChange: event => model.setAdapterHint(event.target.value), SelectProps: {
+            // @ts-ignore
+            SelectDisplayProps: { 'data-testid': 'adapterTypeSelect' },
+        } }, Object.entries(categorizeAdapters(pluginManager
+        .getAdapterElements()
+        .filter(e => { var _a; return !((_a = e.adapterMetadata) === null || _a === void 0 ? void 0 : _a.hiddenFromGUI); }))).map(([key, val]) => {
+        // returning array avoids needing to use a react fragment which
+        // Select/TextField sub-elements disagree with
+        return [
+            React.createElement(ListSubheader, null, key),
+            val.map(elt => (React.createElement(MenuItem, { key: elt.name, value: elt.name }, elt.displayName))),
+        ];
+    })));
+});
+export default TrackAdapterSelector;
+//# sourceMappingURL=TrackAdapterSelector.js.map

package/esm/AddTrackWidget/components/TrackAdapterSelector.js.map ADDED Viewed

@@ -0,0 +1 @@

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package/esm/AddTrackWidget/components/TrackTypeSelector.d.ts ADDED Viewed

@@ -0,0 +1,6 @@
+/// <reference types="react" />
+import { AddTrackModel } from '../model';
+declare const TrackTypeSelector: ({ model }: {
+    model: AddTrackModel;
+}) => JSX.Element;
+export default TrackTypeSelector;

package/esm/AddTrackWidget/components/TrackTypeSelector.js ADDED Viewed

@@ -0,0 +1,22 @@
+import React from 'react';
+import { MenuItem, TextField } from '@mui/material';
+import { getEnv } from '@jbrowse/core/util';
+import { observer } from 'mobx-react';
+import { makeStyles } from 'tss-react/mui';
+const useStyles = makeStyles()(theme => ({
+    spacing: {
+        marginBottom: theme.spacing(3),
+    },
+}));
+const TrackTypeSelector = observer(({ model }) => {
+    const { classes } = useStyles();
+    const { pluginManager } = getEnv(model);
+    const { trackType } = model;
+    const trackTypes = pluginManager.getTrackElements();
+    return (React.createElement(TextField, { className: classes.spacing, value: trackType, variant: "outlined", label: "Track type", helperText: "Select track type", select: true, fullWidth: true, onChange: event => model.setTrackType(event.target.value), SelectProps: {
+            // @ts-ignore
+            SelectDisplayProps: { 'data-testid': 'trackTypeSelect' },
+        } }, trackTypes.map(({ name, displayName }) => (React.createElement(MenuItem, { key: name, value: name }, displayName)))));
+});
+export default TrackTypeSelector;
+//# sourceMappingURL=TrackTypeSelector.js.map

package/esm/AddTrackWidget/components/TrackTypeSelector.js.map ADDED Viewed

@@ -0,0 +1 @@

+ {"version":3,"file":"TrackTypeSelector.js","sourceRoot":"","sources":["../../../src/AddTrackWidget/components/TrackTypeSelector.tsx"],"names":[],"mappings":"AAAA,OAAO,KAAK,MAAM,OAAO,CAAA;AACzB,OAAO,EAAE,QAAQ,EAAE,SAAS,EAAE,MAAM,eAAe,CAAA;AACnD,OAAO,EAAE,MAAM,EAAE,MAAM,oBAAoB,CAAA;AAC3C,OAAO,EAAE,QAAQ,EAAE,MAAM,YAAY,CAAA;AACrC,OAAO,EAAE,UAAU,EAAE,MAAM,eAAe,CAAA;AAK1C,MAAM,SAAS,GAAG,UAAU,EAAE,CAAC,KAAK,CAAC,EAAE,CAAC,CAAC;IACvC,OAAO,EAAE;QACP,YAAY,EAAE,KAAK,CAAC,OAAO,CAAC,CAAC,CAAC;KAC/B;CACF,CAAC,CAAC,CAAA;AAEH,MAAM,iBAAiB,GAAG,QAAQ,CAAC,CAAC,EAAE,KAAK,EAA4B,EAAE,EAAE;IACzE,MAAM,EAAE,OAAO,EAAE,GAAG,SAAS,EAAE,CAAA;IAC/B,MAAM,EAAE,aAAa,EAAE,GAAG,MAAM,CAAC,KAAK,CAAC,CAAA;IACvC,MAAM,EAAE,SAAS,EAAE,GAAG,KAAK,CAAA;IAC3B,MAAM,UAAU,GAAG,aAAa,CAAC,gBAAgB,EAAE,CAAA;IAEnD,OAAO,CACL,oBAAC,SAAS,IACR,SAAS,EAAE,OAAO,CAAC,OAAO,EAC1B,KAAK,EAAE,SAAS,EAChB,OAAO,EAAC,UAAU,EAClB,KAAK,EAAC,YAAY,EAClB,UAAU,EAAC,mBAAmB,EAC9B,MAAM,QACN,SAAS,QACT,QAAQ,EAAE,KAAK,CAAC,EAAE,CAAC,KAAK,CAAC,YAAY,CAAC,KAAK,CAAC,MAAM,CAAC,KAAK,CAAC,EACzD,WAAW,EAAE;YACX,aAAa;YACb,kBAAkB,EAAE,EAAE,aAAa,EAAE,iBAAiB,EAAE;SACzD,IAEA,UAAU,CAAC,GAAG,CAAC,CAAC,EAAE,IAAI,EAAE,WAAW,EAAE,EAAE,EAAE,CAAC,CACzC,oBAAC,QAAQ,IAAC,GAAG,EAAE,IAAI,EAAE,KAAK,EAAE,IAAI,IAC7B,WAAW,CACH,CACZ,CAAC,CACQ,CACb,CAAA;AACH,CAAC,CAAC,CAAA;AAEF,eAAe,iBAAiB,CAAA"}

package/esm/HierarchicalTrackSelectorWidget/components/HierarchicalTrackSelector.js CHANGED Viewed

@@ -1,13 +1,12 @@
 import React, { useCallback, useMemo, useState, useRef, useEffect } from 'react';
 import { Fab, Menu, MenuItem } from '@mui/material';
 import { makeStyles } from 'tss-react/mui';
-// icons
-import AddIcon from '@mui/icons-material/Add';
-// other
-import AutoSizer from 'react-virtualized-auto-sizer';
 import { getSession, isSessionModelWithWidgets, isSessionModelWithConnections, isSessionWithAddTracks, } from '@jbrowse/core/util';
 import { observer } from 'mobx-react';
 import { VariableSizeTree } from 'react-vtree';
+import AutoSizer from 'react-virtualized-auto-sizer';
+// icons
+import AddIcon from '@mui/icons-material/Add';
 import Header from './Header';
 import Node from './Node';
 const useStyles = makeStyles()(theme => ({

package/esm/HierarchicalTrackSelectorWidget/components/HierarchicalTrackSelector.js.map CHANGED Viewed

	@@ -1 +1 @@
1	- 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package/esm/HierarchicalTrackSelectorWidget/components/ToggleConnectionsDialog.js CHANGED Viewed

@@ -32,7 +32,9 @@ function ToggleConnectionDialog({ session, handleClose, breakConnection, }) {
                                 else {
                                     (_a = session.makeConnection) === null || _a === void 0 ? void 0 : _a.call(session, conf);
                                 }
-                            }, color: "primary" }), label: `${name} (${ellipses(assemblyNames.join(','))})` }));
+                            }, color: "primary" }), label: `${name} ${assemblyNames.length
+                            ? '(' + ellipses(assemblyNames.join(',')) + ')'
+                            : ''}` }));
                 }),
                 !connections.length ? (React.createElement(Typography, null, "No connections found")) : null)),
         React.createElement(DialogActions, null,

package/esm/HierarchicalTrackSelectorWidget/components/ToggleConnectionsDialog.js.map CHANGED Viewed

	@@ -1 +1 @@
1	- {"version":3,"file":"ToggleConnectionsDialog.js","sourceRoot":"","sources":["../../../src/HierarchicalTrackSelectorWidget/components/ToggleConnectionsDialog.tsx"],"names":[],"mappings":"AAAA,OAAO,KAAK,MAAM,OAAO,CAAA;AACzB,OAAO,EACL,MAAM,EACN,QAAQ,EACR,aAAa,EACb,aAAa,EACb,gBAAgB,EAChB,UAAU,GACX,MAAM,eAAe,CAAA;AACtB,OAAO,EAAE,MAAM,EAAE,MAAM,kBAAkB,CAAA;AACzC,OAAO,EAAE,UAAU,EAAE,MAAM,eAAe,CAAA;AAC1C,OAAO,EAAE,QAAQ,EAAE,MAAM,YAAY,CAAA;AACrC,OAAO,EAEL,cAAc,GACf,MAAM,6BAA6B,CAAA;AAGpC,MAAM,UAAU,QAAQ,CAAC,IAAY;IACnC,OAAO,IAAI,CAAC,MAAM,GAAG,EAAE,CAAC,CAAC,CAAC,GAAG,IAAI,CAAC,KAAK,CAAC,CAAC,EAAE,EAAE,CAAC,KAAK,CAAC,CAAC,CAAC,IAAI,CAAA;AAC5D,CAAC;AAED,MAAM,SAAS,GAAG,UAAU,EAAE,CAAC,KAAK,CAAC,EAAE,CAAC,CAAC;IACvC,mBAAmB,EAAE;QACnB,KAAK,EAAE,GAAG;QACV,MAAM,EAAE,KAAK,CAAC,OAAO,CAAC,CAAC,CAAC;KACzB;CACF,CAAC,CAAC,CAAA;AAEH,SAAS,sBAAsB,CAAC,EAC9B,OAAO,EACP,WAAW,EACX,eAAe,GAKhB;IACC,MAAM,EAAE,OAAO,EAAE,GAAG,SAAS,EAAE,CAAA;IAC/B,MAAM,EAAE,WAAW,EAAE,mBAAmB,EAAE,SAAS,GAAG,EAAE,EAAE,GAAG,OAAO,CAAA;IACpE,OAAO,CACL,oBAAC,MAAM,IACL,IAAI,QACJ,OAAO,EAAE,WAAW,EACpB,QAAQ,EAAC,IAAI,EACb,KAAK,EAAC,yBAAyB;QAE/B,oBAAC,aAAa;YACZ,oBAAC,UAAU,sDAAyD;YACpE,6BAAK,SAAS,EAAE,OAAO,CAAC,mBAAmB;gBACxC,WAAW,CAAC,GAAG,CAAC,IAAI,CAAC,EAAE;oBACtB,MAAM,IAAI,GAAG,cAAc,CAAC,IAAI,EAAE,MAAM,CAAC,CAAA;oBACzC,MAAM,aAAa,GAAG,cAAc,CAAC,IAAI,EAAE,eAAe,CAAC,CAAA;oBAC3D,MAAM,KAAK,GAAG,SAAS,CAAC,IAAI,CAAC,IAAI,CAAC,EAAE,CAAC,IAAI,KAAK,IAAI,CAAC,IAAI,CAAC,CAAA;oBACxD,OAAO,CACL,oBAAC,gBAAgB,IACf,GAAG,EAAE,IAAI,CAAC,YAAY,EACtB,OAAO,EACL,oBAAC,QAAQ,IACP,OAAO,EAAE,CAAC,CAAC,KAAK,EAChB,QAAQ,EAAE,GAAG,EAAE;;gCACb,IAAI,KAAK,EAAE;oCACT,eAAe,CAAC,IAAI,CAAC,CAAA;iCACtB;qCAAM;oCACL,MAAA,OAAO,CAAC,cAAc,wDAAG,IAAI,CAAC,CAAA;iCAC/B;4BACH,CAAC,EACD,KAAK,EAAC,SAAS,GACf,EAEJ,KAAK,EAAE,GAAG,IAAI,~~KAAK~~,QAAQ,CAAC,aAAa,CAAC,IAAI,CAAC,GAAG,CAAC,CAAC,GAAG,~~GACvD~~,CACH,CAAA;gBACH,CAAC,CAAC;gBACD,CAAC,WAAW,CAAC,MAAM,CAAC,CAAC,CAAC,CACrB,oBAAC,UAAU,+BAAkC,CAC9C,CAAC,CAAC,CAAC,IAAI,CACJ,CACQ;QAChB,oBAAC,aAAa;YACZ,oBAAC,MAAM,IACL,OAAO,EAAE,GAAG,EAAE,CAAC,WAAW,EAAE,EAC5B,OAAO,EAAC,WAAW,EACnB,KAAK,EAAC,SAAS,YAGR,CACK,CACT,CACV,CAAA;AACH,CAAC;AAED,eAAe,QAAQ,CAAC,sBAAsB,CAAC,CAAA"}
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package/esm/HierarchicalTrackSelectorWidget/model.d.ts CHANGED Viewed

@@ -11,7 +11,7 @@ export type TreeNode = {
 };
 export declare function generateHierarchy(model: HierarchicalTrackSelectorModel, trackConfigurations: AnyConfigurationModel[], collapsed: {
     get: (arg: string) => boolean | undefined;
-}): TreeNode[];
+}, extra?: string): TreeNode[];
 export default function stateTreeFactory(pluginManager: PluginManager): import("mobx-state-tree").IModelType<{
     id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
     type: import("mobx-state-tree").ISimpleType<"HierarchicalTrackSelectorWidget">;
@@ -62,6 +62,7 @@ export default function stateTreeFactory(pluginManager: PluginManager): import("
         })[];
     };
     connectionHierarchy(assemblyName: string, connection: {
+        name: string;
         tracks: AnyConfigurationModel[];
     }): TreeNode[];
 }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>;