@jbrowse/plugin-data-management 2.2.0 → 2.2.2

package/dist/AddTrackWidget/components/AddTrackWidget.js

@@ -8,12 +8,14 @@ const mobx_react_1 = require("mobx-react");
 const material_1 = require("@mui/material");
 const util_1 = require("@jbrowse/core/util");
 const DefaultAddTrackWorkflow_1 = __importDefault(require("./DefaultAddTrackWorkflow"));
+const PasteConfigWorkflow_1 = __importDefault(require("./PasteConfigWorkflow"));
 function AddTrackSelector({ model }) {
     const [val, setVal] = (0, util_1.useLocalStorage)('trackSelector-choice', 'Default');
     const { pluginManager } = (0, util_1.getEnv)(model);
     const widgets = pluginManager.getElementTypesInGroup('add track workflow');
     const ComponentMap = {
         Default: DefaultAddTrackWorkflow_1.default,
+        'Add track JSON': PasteConfigWorkflow_1.default,
         ...Object.fromEntries(widgets.map(w => [w.name, w.ReactComponent])),
     };
     // make sure the selected value is in the list

package/dist/AddTrackWidget/components/AddTrackWidget.js.map

@@ -1 +1 @@
-{"version":3,"file":"AddTrackWidget.js","sourceRoot":"","sources":["../../../src/AddTrackWidget/components/AddTrackWidget.tsx"],"names":[],"mappings":";;;;;AAAA,kDAAyB;AACzB,2CAAqC;AACrC,4CAA6E;AAE7E,6CAA4D;AAI5D,wFAA+D;AAE/D,SAAS,gBAAgB,CAAC,EAAE,KAAK,EAA4B;IAC3D,MAAM,CAAC,GAAG,EAAE,MAAM,CAAC,GAAG,IAAA,sBAAe,EAAC,sBAAsB,EAAE,SAAS,CAAC,CAAA;IACxE,MAAM,EAAE,aAAa,EAAE,GAAG,IAAA,aAAM,EAAC,KAAK,CAAC,CAAA;IACvC,MAAM,OAAO,GAAG,aAAa,CAAC,sBAAsB,CAClD,oBAAoB,CACK,CAAA;IAC3B,MAAM,YAAY,GAAG;QACnB,OAAO,EAAE,iCAAuB;QAChC,GAAG,MAAM,CAAC,WAAW,CAAC,OAAO,CAAC,GAAG,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,CAAC,IAAI,EAAE,CAAC,CAAC,cAAc,CAAC,CAAC,CAAC;KACX,CAAA;IAE1D,8CAA8C;IAC9C,MAAM,IAAI,GAAG,YAAY,CAAC,GAAG,CAAC,CAAC,CAAC,CAAC,GAAG,CAAC,CAAC,CAAC,SAAS,CAAA;IAChD,MAAM,SAAS,GAAG,YAAY,CAAC,IAAI,CAAC,CAAA;IACpC,OAAO,CACL;QACE,8BAAC,sBAAW;YACV,8BAAC,iBAAM,IAAC,KAAK,EAAE,IAAI,EAAE,QAAQ,EAAE,KAAK,CAAC,EAAE,CAAC,MAAM,CAAC,KAAK,CAAC,MAAM,CAAC,KAAK,CAAC,IAC/D,MAAM,CAAC,IAAI,CAAC,YAAY,CAAC,CAAC,GAAG,CAAC,CAAC,CAAC,EAAE,CAAC,CAClC,8BAAC,mBAAQ,IAAC,GAAG,EAAE,CAAC,EAAE,KAAK,EAAE,CAAC,IACvB,CAAC,CACO,CACZ,CAAC,CACK;YACT,8BAAC,yBAAc,qCAA4C,CAC/C;QAEd,yCAAM;QACN,8BAAC,SAAS,IAAC,KAAK,EAAE,KAAK,GAAI,CAC1B,CACJ,CAAA;AACH,CAAC;AAED,kBAAe,IAAA,qBAAQ,EAAC,gBAAgB,CAAC,CAAA"}
+{"version":3,"file":"AddTrackWidget.js","sourceRoot":"","sources":["../../../src/AddTrackWidget/components/AddTrackWidget.tsx"],"names":[],"mappings":";;;;;AAAA,kDAAyB;AACzB,2CAAqC;AACrC,4CAA6E;AAE7E,6CAA4D;AAI5D,wFAA+D;AAC/D,gFAAuD;AAEvD,SAAS,gBAAgB,CAAC,EAAE,KAAK,EAA4B;IAC3D,MAAM,CAAC,GAAG,EAAE,MAAM,CAAC,GAAG,IAAA,sBAAe,EAAC,sBAAsB,EAAE,SAAS,CAAC,CAAA;IACxE,MAAM,EAAE,aAAa,EAAE,GAAG,IAAA,aAAM,EAAC,KAAK,CAAC,CAAA;IACvC,MAAM,OAAO,GAAG,aAAa,CAAC,sBAAsB,CAClD,oBAAoB,CACK,CAAA;IAC3B,MAAM,YAAY,GAAG;QACnB,OAAO,EAAE,iCAAuB;QAChC,gBAAgB,EAAE,6BAAmB;QACrC,GAAG,MAAM,CAAC,WAAW,CAAC,OAAO,CAAC,GAAG,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,CAAC,IAAI,EAAE,CAAC,CAAC,cAAc,CAAC,CAAC,CAAC;KACX,CAAA;IAE1D,8CAA8C;IAC9C,MAAM,IAAI,GAAG,YAAY,CAAC,GAAG,CAAC,CAAC,CAAC,CAAC,GAAG,CAAC,CAAC,CAAC,SAAS,CAAA;IAChD,MAAM,SAAS,GAAG,YAAY,CAAC,IAAI,CAAC,CAAA;IACpC,OAAO,CACL;QACE,8BAAC,sBAAW;YACV,8BAAC,iBAAM,IAAC,KAAK,EAAE,IAAI,EAAE,QAAQ,EAAE,KAAK,CAAC,EAAE,CAAC,MAAM,CAAC,KAAK,CAAC,MAAM,CAAC,KAAK,CAAC,IAC/D,MAAM,CAAC,IAAI,CAAC,YAAY,CAAC,CAAC,GAAG,CAAC,CAAC,CAAC,EAAE,CAAC,CAClC,8BAAC,mBAAQ,IAAC,GAAG,EAAE,CAAC,EAAE,KAAK,EAAE,CAAC,IACvB,CAAC,CACO,CACZ,CAAC,CACK;YACT,8BAAC,yBAAc,qCAA4C,CAC/C;QAEd,yCAAM;QACN,8BAAC,SAAS,IAAC,KAAK,EAAE,KAAK,GAAI,CAC1B,CACJ,CAAA;AACH,CAAC;AAED,kBAAe,IAAA,qBAAQ,EAAC,gBAAgB,CAAC,CAAA"}

package/dist/AddTrackWidget/components/PasteConfigWorkflow.d.ts

@@ -0,0 +1,7 @@
+/// <reference types="react" />
+import { AddTrackModel } from '../model';
+declare function AddTrackWorkflow({ model }: {
+    model: AddTrackModel;
+}): JSX.Element;
+declare const _default: typeof AddTrackWorkflow;
+export default _default;

package/dist/AddTrackWidget/components/PasteConfigWorkflow.js

@@ -0,0 +1,66 @@
+"use strict";
+var __createBinding = (this && this.__createBinding) || (Object.create ? (function(o, m, k, k2) {
+    if (k2 === undefined) k2 = k;
+    var desc = Object.getOwnPropertyDescriptor(m, k);
+    if (!desc || ("get" in desc ? !m.__esModule : desc.writable || desc.configurable)) {
+      desc = { enumerable: true, get: function() { return m[k]; } };
+    }
+    Object.defineProperty(o, k2, desc);
+}) : (function(o, m, k, k2) {
+    if (k2 === undefined) k2 = k;
+    o[k2] = m[k];
+}));
+var __setModuleDefault = (this && this.__setModuleDefault) || (Object.create ? (function(o, v) {
+    Object.defineProperty(o, "default", { enumerable: true, value: v });
+}) : function(o, v) {
+    o["default"] = v;
+});
+var __importStar = (this && this.__importStar) || function (mod) {
+    if (mod && mod.__esModule) return mod;
+    var result = {};
+    if (mod != null) for (var k in mod) if (k !== "default" && Object.prototype.hasOwnProperty.call(mod, k)) __createBinding(result, mod, k);
+    __setModuleDefault(result, mod);
+    return result;
+};
+Object.defineProperty(exports, "__esModule", { value: true });
+const react_1 = __importStar(require("react"));
+const material_1 = require("@mui/material");
+const ui_1 = require("@jbrowse/core/ui");
+const mui_1 = require("tss-react/mui");
+const util_1 = require("@jbrowse/core/util");
+const mobx_react_1 = require("mobx-react");
+const useStyles = (0, mui_1.makeStyles)()({
+    textbox: {
+        width: '100%',
+    },
+    submit: {
+        marginTop: 25,
+        marginBottom: 100,
+        display: 'block',
+    },
+});
+function AddTrackWorkflow({ model }) {
+    const { classes } = useStyles();
+    const [val, setVal] = (0, react_1.useState)('');
+    const [error, setError] = (0, react_1.useState)();
+    return (react_1.default.createElement("div", null,
+        error ? react_1.default.createElement(ui_1.ErrorMessage, { error: error }) : null,
+        react_1.default.createElement(material_1.TextField, { multiline: true, rows: 10, value: val, onChange: event => setVal(event.target.value), placeholder: 'Paste track config or array of track configs in JSON format', variant: "outlined", className: classes.textbox }),
+        react_1.default.createElement(material_1.Button, { variant: "contained", className: classes.submit, onClick: () => {
+                try {
+                    setError(undefined);
+                    const session = (0, util_1.getSession)(model);
+                    const conf = JSON.parse(val);
+                    const confs = Array.isArray(conf) ? conf : [conf];
+                    confs.forEach(c => session.addTrackConf(c));
+                    confs.forEach(c => c.trackId);
+                    model.clearData();
+                    session.hideWidget(model);
+                }
+                catch (e) {
+                    setError(e);
+                }
+            } }, "Submit")));
+}
+exports.default = (0, mobx_react_1.observer)(AddTrackWorkflow);
+//# sourceMappingURL=PasteConfigWorkflow.js.map

package/dist/AddTrackWidget/components/PasteConfigWorkflow.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"PasteConfigWorkflow.js","sourceRoot":"","sources":["../../../src/AddTrackWidget/components/PasteConfigWorkflow.tsx"],"names":[],"mappings":";;;;;;;;;;;;;;;;;;;;;;;;;AAAA,+CAAuC;AACvC,4CAAiD;AACjD,yCAA+C;AAC/C,uCAA0C;AAC1C,6CAA+C;AAC/C,2CAAqC;AAKrC,MAAM,SAAS,GAAG,IAAA,gBAAU,GAAE,CAAC;IAC7B,OAAO,EAAE;QACP,KAAK,EAAE,MAAM;KACd;IACD,MAAM,EAAE;QACN,SAAS,EAAE,EAAE;QACb,YAAY,EAAE,GAAG;QACjB,OAAO,EAAE,OAAO;KACjB;CACF,CAAC,CAAA;AAEF,SAAS,gBAAgB,CAAC,EAAE,KAAK,EAA4B;IAC3D,MAAM,EAAE,OAAO,EAAE,GAAG,SAAS,EAAE,CAAA;IAC/B,MAAM,CAAC,GAAG,EAAE,MAAM,CAAC,GAAG,IAAA,gBAAQ,EAAC,EAAE,CAAC,CAAA;IAClC,MAAM,CAAC,KAAK,EAAE,QAAQ,CAAC,GAAG,IAAA,gBAAQ,GAAW,CAAA;IAE7C,OAAO,CACL;QACG,KAAK,CAAC,CAAC,CAAC,8BAAC,iBAAY,IAAC,KAAK,EAAE,KAAK,GAAI,CAAC,CAAC,CAAC,IAAI;QAC9C,8BAAC,oBAAS,IACR,SAAS,QACT,IAAI,EAAE,EAAE,EACR,KAAK,EAAE,GAAG,EACV,QAAQ,EAAE,KAAK,CAAC,EAAE,CAAC,MAAM,CAAC,KAAK,CAAC,MAAM,CAAC,KAAK,CAAC,EAC7C,WAAW,EACT,6DAA6D,EAE/D,OAAO,EAAC,UAAU,EAClB,SAAS,EAAE,OAAO,CAAC,OAAO,GAC1B;QACF,8BAAC,iBAAM,IACL,OAAO,EAAC,WAAW,EACnB,SAAS,EAAE,OAAO,CAAC,MAAM,EACzB,OAAO,EAAE,GAAG,EAAE;gBACZ,IAAI;oBACF,QAAQ,CAAC,SAAS,CAAC,CAAA;oBACnB,MAAM,OAAO,GAAG,IAAA,iBAAU,EAAC,KAAK,CAAC,CAAA;oBACjC,MAAM,IAAI,GAAG,IAAI,CAAC,KAAK,CAAC,GAAG,CAAC,CAAA;oBAC5B,MAAM,KAAK,GAAG,KAAK,CAAC,OAAO,CAAC,IAAI,CAAC,CAAC,CAAC,CAAC,IAAI,CAAC,CAAC,CAAC,CAAC,IAAI,CAAC,CAAA;oBACjD,KAAK,CAAC,OAAO,CAAC,CAAC,CAAC,EAAE,CAAC,OAAO,CAAC,YAAY,CAAC,CAAC,CAAC,CAAC,CAAA;oBAC3C,KAAK,CAAC,OAAO,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,OAAO,CAAC,CAAA;oBAC7B,KAAK,CAAC,SAAS,EAAE,CAAA;oBACjB,OAAO,CAAC,UAAU,CAAC,KAAK,CAAC,CAAA;iBAC1B;gBAAC,OAAO,CAAC,EAAE;oBACV,QAAQ,CAAC,CAAC,CAAC,CAAA;iBACZ;YACH,CAAC,aAGM,CACL,CACP,CAAA;AACH,CAAC;AACD,kBAAe,IAAA,qBAAQ,EAAC,gBAAgB,CAAC,CAAA"}

package/dist/AddTrackWidget/model.d.ts

@@ -46,6 +46,6 @@ export default function f(pluginManager: PluginManager): import("mobx-state-tree
 } & {
     readonly warningMessage: "" | "Warning: JBrowse cannot access files using the ftp protocol" | "Warning: one or more of your files do not provide the protocol e.g.\n          https://, please provide an absolute URL unless you are sure a\n          relative URL is intended." | "Warning: You entered a http:// resources but we cannot access HTTP\n          resources from JBrowse when it is running on https. Please use an\n          https URL for your track, or access the JBrowse app from the http\n          protocol";
 }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>;
-export declare type AddTrackStateModel = ReturnType<typeof f>;
-export declare type AddTrackModel = Instance<AddTrackStateModel>;
+export type AddTrackStateModel = ReturnType<typeof f>;
+export type AddTrackModel = Instance<AddTrackStateModel>;
 export {};

package/dist/AssemblyManager/AssemblyAddForm.js

@@ -28,59 +28,35 @@ var __importDefault = (this && this.__importDefault) || function (mod) {
 Object.defineProperty(exports, "__esModule", { value: true });
 const react_1 = __importStar(require("react"));
 const mobx_react_1 = require("mobx-react");
-const FileSelector_1 = __importDefault(require("@jbrowse/core/ui/FileSelector"));
 const material_1 = require("@mui/material");
-const mui_1 = require("tss-react/mui");
+const ui_1 = require("@jbrowse/core/ui");
+// icons
 const Add_1 = __importDefault(require("@mui/icons-material/Add"));
-const useStyles = (0, mui_1.makeStyles)()(theme => ({
-    root: {
-        flexGrow: 1,
-        overflow: 'hidden',
-        padding: theme.spacing(0, 3),
-    },
-    paper: {
-        margin: `${theme.spacing(1)}px auto`,
-        padding: theme.spacing(2),
-    },
-    createButton: {
-        marginTop: '1em',
-        justifyContent: 'center',
-    },
-    paperContent: {
-        flex: 'auto',
-        margin: `${theme.spacing(1)}px auto`,
-        padding: theme.spacing(1),
-        overflow: 'auto',
-    },
-}));
-const AdapterSelector = (0, mobx_react_1.observer)(({ adapterSelection, setAdapterSelection, adapterTypes, }) => {
-    return (react_1.default.createElement(material_1.TextField, { value: adapterSelection, label: "Type", select: true, helperText: "Type of adapter to use", fullWidth: true, onChange: event => {
-            setAdapterSelection(event.target.value);
-        } }, adapterTypes.map(str => (react_1.default.createElement(material_1.MenuItem, { key: str, value: str }, str)))));
+const AdapterSelector = (0, mobx_react_1.observer)(function ({ adapterSelection, setAdapterSelection, adapterTypes, }) {
+    return (react_1.default.createElement(material_1.TextField, { value: adapterSelection, label: "Type", select: true, helperText: "Type of adapter to use", fullWidth: true, onChange: event => setAdapterSelection(event.target.value) }, adapterTypes.map(str => (react_1.default.createElement(material_1.MenuItem, { key: str, value: str }, str)))));
 });
 const AdapterInput = (0, mobx_react_1.observer)(({ adapterSelection, fastaLocation, setFastaLocation, faiLocation, setFaiLocation, gziLocation, setGziLocation, twoBitLocation, setTwoBitLocation, chromSizesLocation, setChromSizesLocation, }) => {
     if (adapterSelection === 'IndexedFastaAdapter' ||
         adapterSelection === 'BgzipFastaAdapter') {
         return (react_1.default.createElement(material_1.Grid, { container: true, spacing: 2 },
             react_1.default.createElement(material_1.Grid, { item: true },
-                react_1.default.createElement(FileSelector_1.default, { name: "fastaLocation", location: fastaLocation, setLocation: loc => setFastaLocation(loc) })),
+                react_1.default.createElement(ui_1.FileSelector, { name: "fastaLocation", location: fastaLocation, setLocation: loc => setFastaLocation(loc) })),
             react_1.default.createElement(material_1.Grid, { item: true },
-                react_1.default.createElement(FileSelector_1.default, { name: "faiLocation", location: faiLocation, setLocation: loc => setFaiLocation(loc) })),
+                react_1.default.createElement(ui_1.FileSelector, { name: "faiLocation", location: faiLocation, setLocation: loc => setFaiLocation(loc) })),
             adapterSelection === 'BgzipFastaAdapter' ? (react_1.default.createElement(material_1.Grid, { item: true },
-                react_1.default.createElement(FileSelector_1.default, { name: "gziLocation", location: gziLocation, setLocation: loc => setGziLocation(loc) }))) : null));
+                react_1.default.createElement(ui_1.FileSelector, { name: "gziLocation", location: gziLocation, setLocation: loc => setGziLocation(loc) }))) : null));
     }
     if (adapterSelection === 'TwoBitAdapter') {
         return (react_1.default.createElement(material_1.Grid, { container: true, spacing: 2 },
             react_1.default.createElement(material_1.Grid, { item: true },
-                react_1.default.createElement(FileSelector_1.default, { name: "twoBitLocation", location: twoBitLocation, setLocation: loc => setTwoBitLocation(loc) })),
+                react_1.default.createElement(ui_1.FileSelector, { name: "twoBitLocation", location: twoBitLocation, setLocation: loc => setTwoBitLocation(loc) })),
             react_1.default.createElement(material_1.Grid, { item: true },
-                react_1.default.createElement(FileSelector_1.default, { name: "chromSizesLocation (optional, can be added to speed up loading 2bit files with many contigs)", location: chromSizesLocation, setLocation: loc => setChromSizesLocation(loc) }))));
+                react_1.default.createElement(ui_1.FileSelector, { name: "chromSizesLocation (optional, can be added to speed up loading 2bit files with many contigs)", location: chromSizesLocation, setLocation: loc => setChromSizesLocation(loc) }))));
     }
     return null;
 });
 const blank = { uri: '' };
-const AssemblyAddForm = (0, mobx_react_1.observer)(({ rootModel, setFormOpen, }) => {
-    const { classes } = useStyles();
+const AssemblyAddForm = (0, mobx_react_1.observer)(function ({ rootModel, setFormOpen, }) {
     const adapterTypes = [
         'IndexedFastaAdapter',
         'BgzipFastaAdapter',
@@ -145,16 +121,13 @@ const AssemblyAddForm = (0, mobx_react_1.observer)(({ rootModel, setFormOpen, })
             rootModel.session.notify(`Successfully added ${assemblyName} assembly to JBrowse 2`, 'success');
         }
     }
-    return (react_1.default.createElement("div", { className: classes.root },
-        react_1.default.createElement(material_1.Paper, { className: classes.paper },
+    return (react_1.default.createElement("div", null,
+        react_1.default.createElement(material_1.Paper, null,
             react_1.default.createElement(material_1.TextField, { id: "assembly-name", inputProps: { 'data-testid': 'assembly-name' }, label: "Assembly name", helperText: "The assembly name e.g. hg38", variant: "outlined", value: assemblyName, onChange: event => setAssemblyName(event.target.value) }),
             react_1.default.createElement(material_1.TextField, { id: "assembly-name", inputProps: { 'data-testid': 'assembly-display-name' }, label: "Assembly display name", helperText: 'A human readable display name for the assembly e.g. "Homo sapiens (hg38)"', variant: "outlined", value: assemblyDisplayName, onChange: event => setAssemblyDisplayName(event.target.value) }),
             react_1.default.createElement(AdapterSelector, { adapterSelection: adapterSelection, setAdapterSelection: setAdapterSelection, adapterTypes: adapterTypes }),
-            react_1.default.createElement("div", { className: classes.paperContent },
-                react_1.default.createElement(AdapterInput, { adapterSelection: adapterSelection, fastaLocation: fastaLocation, setFastaLocation: setFastaLocation, faiLocation: faiLocation, setFaiLocation: setFaiLocation, gziLocation: gziLocation, setGziLocation: setGziLocation, twoBitLocation: twoBitLocation, setTwoBitLocation: setTwoBitLocation, chromSizesLocation: chromSizesLocation, setChromSizesLocation: setChromSizesLocation }))),
-        react_1.default.createElement(material_1.Grid, { container: true, className: classes.createButton },
-            react_1.default.createElement(material_1.Grid, { item: true },
-                react_1.default.createElement(material_1.Button, { variant: "contained", color: "secondary", startIcon: react_1.default.createElement(Add_1.default, null), onClick: createAssembly }, "Create new assembly")))));
+            react_1.default.createElement(AdapterInput, { adapterSelection: adapterSelection, fastaLocation: fastaLocation, setFastaLocation: setFastaLocation, faiLocation: faiLocation, setFaiLocation: setFaiLocation, gziLocation: gziLocation, setGziLocation: setGziLocation, twoBitLocation: twoBitLocation, setTwoBitLocation: setTwoBitLocation, chromSizesLocation: chromSizesLocation, setChromSizesLocation: setChromSizesLocation })),
+        react_1.default.createElement(material_1.Button, { variant: "contained", color: "secondary", startIcon: react_1.default.createElement(Add_1.default, null), onClick: createAssembly }, "Create new assembly")));
 });
 exports.default = AssemblyAddForm;
 //# sourceMappingURL=AssemblyAddForm.js.map

package/dist/AssemblyManager/AssemblyAddForm.js.map

@@ -1 +1 @@
-{"version":3,"file":"AssemblyAddForm.js","sourceRoot":"","sources":["../../src/AssemblyManager/AssemblyAddForm.tsx"],"names":[],"mappings":";;;;;;;;;;;;;;;;;;;;;;;;;;;;AAAA,+CAAuC;AACvC,2CAAqC;AACrC,iFAAwD;AAExD,4CAAwE;AACxE,uCAA0C;AAC1C,kEAA6C;AAE7C,MAAM,SAAS,GAAG,IAAA,gBAAU,GAAE,CAAC,KAAK,CAAC,EAAE,CAAC,CAAC;IACvC,IAAI,EAAE;QACJ,QAAQ,EAAE,CAAC;QACX,QAAQ,EAAE,QAAQ;QAClB,OAAO,EAAE,KAAK,CAAC,OAAO,CAAC,CAAC,EAAE,CAAC,CAAC;KAC7B;IACD,KAAK,EAAE;QACL,MAAM,EAAE,GAAG,KAAK,CAAC,OAAO,CAAC,CAAC,CAAC,SAAS;QACpC,OAAO,EAAE,KAAK,CAAC,OAAO,CAAC,CAAC,CAAC;KAC1B;IACD,YAAY,EAAE;QACZ,SAAS,EAAE,KAAK;QAChB,cAAc,EAAE,QAAQ;KACzB;IACD,YAAY,EAAE;QACZ,IAAI,EAAE,MAAM;QACZ,MAAM,EAAE,GAAG,KAAK,CAAC,OAAO,CAAC,CAAC,CAAC,SAAS;QACpC,OAAO,EAAE,KAAK,CAAC,OAAO,CAAC,CAAC,CAAC;QACzB,QAAQ,EAAE,MAAM;KACjB;CACF,CAAC,CAAC,CAAA;AAEH,MAAM,eAAe,GAAG,IAAA,qBAAQ,EAC9B,CAAC,EACC,gBAAgB,EAChB,mBAAmB,EACnB,YAAY,GAKb,EAAE,EAAE;IACH,OAAO,CACL,8BAAC,oBAAS,IACR,KAAK,EAAE,gBAAgB,EACvB,KAAK,EAAC,MAAM,EACZ,MAAM,QACN,UAAU,EAAC,wBAAwB,EACnC,SAAS,QACT,QAAQ,EAAE,KAAK,CAAC,EAAE;YAChB,mBAAmB,CAAC,KAAK,CAAC,MAAM,CAAC,KAAK,CAAC,CAAA;QACzC,CAAC,IAEA,YAAY,CAAC,GAAG,CAAC,GAAG,CAAC,EAAE,CAAC,CACvB,8BAAC,mBAAQ,IAAC,GAAG,EAAE,GAAG,EAAE,KAAK,EAAE,GAAG,IAC3B,GAAG,CACK,CACZ,CAAC,CACQ,CACb,CAAA;AACH,CAAC,CACF,CAAA;AAED,MAAM,YAAY,GAAG,IAAA,qBAAQ,EAC3B,CAAC,EACC,gBAAgB,EAChB,aAAa,EACb,gBAAgB,EAChB,WAAW,EACX,cAAc,EACd,WAAW,EACX,cAAc,EACd,cAAc,EACd,iBAAiB,EACjB,kBAAkB,EAClB,qBAAqB,GAatB,EAAE,EAAE;IACH,IACE,gBAAgB,KAAK,qBAAqB;QAC1C,gBAAgB,KAAK,mBAAmB,EACxC;QACA,OAAO,CACL,8BAAC,eAAI,IAAC,SAAS,QAAC,OAAO,EAAE,CAAC;YACxB,8BAAC,eAAI,IAAC,IAAI;gBACR,8BAAC,sBAAY,IACX,IAAI,EAAC,eAAe,EACpB,QAAQ,EAAE,aAAa,EACvB,WAAW,EAAE,GAAG,CAAC,EAAE,CAAC,gBAAgB,CAAC,GAAG,CAAC,GACzC,CACG;YACP,8BAAC,eAAI,IAAC,IAAI;gBACR,8BAAC,sBAAY,IACX,IAAI,EAAC,aAAa,EAClB,QAAQ,EAAE,WAAW,EACrB,WAAW,EAAE,GAAG,CAAC,EAAE,CAAC,cAAc,CAAC,GAAG,CAAC,GACvC,CACG;YACN,gBAAgB,KAAK,mBAAmB,CAAC,CAAC,CAAC,CAC1C,8BAAC,eAAI,IAAC,IAAI;gBACR,8BAAC,sBAAY,IACX,IAAI,EAAC,aAAa,EAClB,QAAQ,EAAE,WAAW,EACrB,WAAW,EAAE,GAAG,CAAC,EAAE,CAAC,cAAc,CAAC,GAAG,CAAC,GACvC,CACG,CACR,CAAC,CAAC,CAAC,IAAI,CACH,CACR,CAAA;KACF;IAED,IAAI,gBAAgB,KAAK,eAAe,EAAE;QACxC,OAAO,CACL,8BAAC,eAAI,IAAC,SAAS,QAAC,OAAO,EAAE,CAAC;YACxB,8BAAC,eAAI,IAAC,IAAI;gBACR,8BAAC,sBAAY,IACX,IAAI,EAAC,gBAAgB,EACrB,QAAQ,EAAE,cAAc,EACxB,WAAW,EAAE,GAAG,CAAC,EAAE,CAAC,iBAAiB,CAAC,GAAG,CAAC,GAC1C,CACG;YACP,8BAAC,eAAI,IAAC,IAAI;gBACR,8BAAC,sBAAY,IACX,IAAI,EAAC,8FAA8F,EACnG,QAAQ,EAAE,kBAAkB,EAC5B,WAAW,EAAE,GAAG,CAAC,EAAE,CAAC,qBAAqB,CAAC,GAAG,CAAC,GAC9C,CACG,CACF,CACR,CAAA;KACF;IAED,OAAO,IAAI,CAAA;AACb,CAAC,CACF,CAAA;AAED,MAAM,KAAK,GAAG,EAAE,GAAG,EAAE,EAAE,EAAkB,CAAA;AAEzC,MAAM,eAAe,GAAG,IAAA,qBAAQ,EAC9B,CAAC,EACC,SAAS,EACT,WAAW,GAKZ,EAAE,EAAE;IACH,MAAM,EAAE,OAAO,EAAE,GAAG,SAAS,EAAE,CAAA;IAE/B,MAAM,YAAY,GAAG;QACnB,qBAAqB;QACrB,mBAAmB;QACnB,eAAe;KAChB,CAAA;IAED,MAAM,CAAC,YAAY,EAAE,eAAe,CAAC,GAAG,IAAA,gBAAQ,EAAC,EAAE,CAAC,CAAA;IACpD,MAAM,CAAC,mBAAmB,EAAE,sBAAsB,CAAC,GAAG,IAAA,gBAAQ,EAAC,EAAE,CAAC,CAAA;IAClE,MAAM,CAAC,gBAAgB,EAAE,mBAAmB,CAAC,GAAG,IAAA,gBAAQ,EAAC,YAAY,CAAC,CAAC,CAAC,CAAC,CAAA;IACzE,MAAM,CAAC,aAAa,EAAE,gBAAgB,CAAC,GAAG,IAAA,gBAAQ,EAAC,KAAK,CAAC,CAAA;IACzD,MAAM,CAAC,WAAW,EAAE,cAAc,CAAC,GAAG,IAAA,gBAAQ,EAAC,KAAK,CAAC,CAAA;IACrD,MAAM,CAAC,WAAW,EAAE,cAAc,CAAC,GAAG,IAAA,gBAAQ,EAAC,KAAK,CAAC,CAAA;IACrD,MAAM,CAAC,cAAc,EAAE,iBAAiB,CAAC,GAAG,IAAA,gBAAQ,EAAC,KAAK,CAAC,CAAA;IAC3D,MAAM,CAAC,kBAAkB,EAAE,qBAAqB,CAAC,GAAG,IAAA,gBAAQ,EAAC,KAAK,CAAC,CAAA;IAEnE,SAAS,cAAc;QACrB,IAAI,YAAY,KAAK,EAAE,EAAE;YACvB,SAAS,CAAC,OAAO,CAAC,MAAM,CAAC,yCAAyC,CAAC,CAAA;SACpE;aAAM;YACL,WAAW,CAAC,KAAK,CAAC,CAAA;YAClB,IAAI,WAAW,CAAA;YACf,IAAI,gBAAgB,KAAK,qBAAqB,EAAE;gBAC9C,WAAW,GAAG;oBACZ,IAAI,EAAE,YAAY;oBAClB,WAAW,EAAE,mBAAmB;oBAChC,QAAQ,EAAE;wBACR,OAAO,EAAE;4BACP,IAAI,EAAE,qBAAqB;4BAC3B,aAAa;4BACb,WAAW;yBACZ;qBACF;iBACF,CAAA;aACF;iBAAM,IAAI,gBAAgB,KAAK,mBAAmB,EAAE;gBACnD,WAAW,GAAG;oBACZ,IAAI,EAAE,YAAY;oBAClB,WAAW,EAAE,mBAAmB;oBAChC,QAAQ,EAAE;wBACR,OAAO,EAAE;4BACP,IAAI,EAAE,mBAAmB;4BACzB,aAAa;4BACb,WAAW;4BACX,WAAW;yBACZ;qBACF;iBACF,CAAA;aACF;iBAAM,IAAI,gBAAgB,KAAK,eAAe,EAAE;gBAC/C,WAAW,GAAG;oBACZ,IAAI,EAAE,YAAY;oBAClB,WAAW,EAAE,mBAAmB;oBAChC,QAAQ,EAAE;wBACR,OAAO,EAAE;4BACP,IAAI,EAAE,eAAe;4BACrB,cAAc;4BACd,kBAAkB;yBACnB;qBACF;iBACF,CAAA;aACF;YACD,SAAS,CAAC,OAAO,CAAC,eAAe,CAAC,WAAW,CAAC,CAAA;YAC9C,SAAS,CAAC,OAAO,CAAC,MAAM,CACtB,sBAAsB,YAAY,wBAAwB,EAC1D,SAAS,CACV,CAAA;SACF;IACH,CAAC;IAED,OAAO,CACL,uCAAK,SAAS,EAAE,OAAO,CAAC,IAAI;QAC1B,8BAAC,gBAAK,IAAC,SAAS,EAAE,OAAO,CAAC,KAAK;YAC7B,8BAAC,oBAAS,IACR,EAAE,EAAC,eAAe,EAClB,UAAU,EAAE,EAAE,aAAa,EAAE,eAAe,EAAE,EAC9C,KAAK,EAAC,eAAe,EACrB,UAAU,EAAC,6BAA6B,EACxC,OAAO,EAAC,UAAU,EAClB,KAAK,EAAE,YAAY,EACnB,QAAQ,EAAE,KAAK,CAAC,EAAE,CAAC,eAAe,CAAC,KAAK,CAAC,MAAM,CAAC,KAAK,CAAC,GACtD;YACF,8BAAC,oBAAS,IACR,EAAE,EAAC,eAAe,EAClB,UAAU,EAAE,EAAE,aAAa,EAAE,uBAAuB,EAAE,EACtD,KAAK,EAAC,uBAAuB,EAC7B,UAAU,EAAC,2EAA2E,EACtF,OAAO,EAAC,UAAU,EAClB,KAAK,EAAE,mBAAmB,EAC1B,QAAQ,EAAE,KAAK,CAAC,EAAE,CAAC,sBAAsB,CAAC,KAAK,CAAC,MAAM,CAAC,KAAK,CAAC,GAC7D;YACF,8BAAC,eAAe,IACd,gBAAgB,EAAE,gBAAgB,EAClC,mBAAmB,EAAE,mBAAmB,EACxC,YAAY,EAAE,YAAY,GAC1B;YACF,uCAAK,SAAS,EAAE,OAAO,CAAC,YAAY;gBAClC,8BAAC,YAAY,IACX,gBAAgB,EAAE,gBAAgB,EAClC,aAAa,EAAE,aAAa,EAC5B,gBAAgB,EAAE,gBAAgB,EAClC,WAAW,EAAE,WAAW,EACxB,cAAc,EAAE,cAAc,EAC9B,WAAW,EAAE,WAAW,EACxB,cAAc,EAAE,cAAc,EAC9B,cAAc,EAAE,cAAc,EAC9B,iBAAiB,EAAE,iBAAiB,EACpC,kBAAkB,EAAE,kBAAkB,EACtC,qBAAqB,EAAE,qBAAqB,GAC5C,CACE,CACA;QACR,8BAAC,eAAI,IAAC,SAAS,QAAC,SAAS,EAAE,OAAO,CAAC,YAAY;YAC7C,8BAAC,eAAI,IAAC,IAAI;gBACR,8BAAC,iBAAM,IACL,OAAO,EAAC,WAAW,EACnB,KAAK,EAAC,WAAW,EACjB,SAAS,EAAE,8BAAC,aAAO,OAAG,EACtB,OAAO,EAAE,cAAc,0BAGhB,CACJ,CACF,CACH,CACP,CAAA;AACH,CAAC,CACF,CAAA;AAED,kBAAe,eAAe,CAAA"}
+{"version":3,"file":"AssemblyAddForm.js","sourceRoot":"","sources":["../../src/AssemblyManager/AssemblyAddForm.tsx"],"names":[],"mappings":";;;;;;;;;;;;;;;;;;;;;;;;;;;;AAAA,+CAAuC;AACvC,2CAAqC;AACrC,4CAAwE;AACxE,yCAA+C;AAG/C,QAAQ;AACR,kEAA6C;AAE7C,MAAM,eAAe,GAAG,IAAA,qBAAQ,EAAC,UAAU,EACzC,gBAAgB,EAChB,mBAAmB,EACnB,YAAY,GAKb;IACC,OAAO,CACL,8BAAC,oBAAS,IACR,KAAK,EAAE,gBAAgB,EACvB,KAAK,EAAC,MAAM,EACZ,MAAM,QACN,UAAU,EAAC,wBAAwB,EACnC,SAAS,QACT,QAAQ,EAAE,KAAK,CAAC,EAAE,CAAC,mBAAmB,CAAC,KAAK,CAAC,MAAM,CAAC,KAAK,CAAC,IAEzD,YAAY,CAAC,GAAG,CAAC,GAAG,CAAC,EAAE,CAAC,CACvB,8BAAC,mBAAQ,IAAC,GAAG,EAAE,GAAG,EAAE,KAAK,EAAE,GAAG,IAC3B,GAAG,CACK,CACZ,CAAC,CACQ,CACb,CAAA;AACH,CAAC,CAAC,CAAA;AAEF,MAAM,YAAY,GAAG,IAAA,qBAAQ,EAC3B,CAAC,EACC,gBAAgB,EAChB,aAAa,EACb,gBAAgB,EAChB,WAAW,EACX,cAAc,EACd,WAAW,EACX,cAAc,EACd,cAAc,EACd,iBAAiB,EACjB,kBAAkB,EAClB,qBAAqB,GAatB,EAAE,EAAE;IACH,IACE,gBAAgB,KAAK,qBAAqB;QAC1C,gBAAgB,KAAK,mBAAmB,EACxC;QACA,OAAO,CACL,8BAAC,eAAI,IAAC,SAAS,QAAC,OAAO,EAAE,CAAC;YACxB,8BAAC,eAAI,IAAC,IAAI;gBACR,8BAAC,iBAAY,IACX,IAAI,EAAC,eAAe,EACpB,QAAQ,EAAE,aAAa,EACvB,WAAW,EAAE,GAAG,CAAC,EAAE,CAAC,gBAAgB,CAAC,GAAG,CAAC,GACzC,CACG;YACP,8BAAC,eAAI,IAAC,IAAI;gBACR,8BAAC,iBAAY,IACX,IAAI,EAAC,aAAa,EAClB,QAAQ,EAAE,WAAW,EACrB,WAAW,EAAE,GAAG,CAAC,EAAE,CAAC,cAAc,CAAC,GAAG,CAAC,GACvC,CACG;YACN,gBAAgB,KAAK,mBAAmB,CAAC,CAAC,CAAC,CAC1C,8BAAC,eAAI,IAAC,IAAI;gBACR,8BAAC,iBAAY,IACX,IAAI,EAAC,aAAa,EAClB,QAAQ,EAAE,WAAW,EACrB,WAAW,EAAE,GAAG,CAAC,EAAE,CAAC,cAAc,CAAC,GAAG,CAAC,GACvC,CACG,CACR,CAAC,CAAC,CAAC,IAAI,CACH,CACR,CAAA;KACF;IAED,IAAI,gBAAgB,KAAK,eAAe,EAAE;QACxC,OAAO,CACL,8BAAC,eAAI,IAAC,SAAS,QAAC,OAAO,EAAE,CAAC;YACxB,8BAAC,eAAI,IAAC,IAAI;gBACR,8BAAC,iBAAY,IACX,IAAI,EAAC,gBAAgB,EACrB,QAAQ,EAAE,cAAc,EACxB,WAAW,EAAE,GAAG,CAAC,EAAE,CAAC,iBAAiB,CAAC,GAAG,CAAC,GAC1C,CACG;YACP,8BAAC,eAAI,IAAC,IAAI;gBACR,8BAAC,iBAAY,IACX,IAAI,EAAC,8FAA8F,EACnG,QAAQ,EAAE,kBAAkB,EAC5B,WAAW,EAAE,GAAG,CAAC,EAAE,CAAC,qBAAqB,CAAC,GAAG,CAAC,GAC9C,CACG,CACF,CACR,CAAA;KACF;IAED,OAAO,IAAI,CAAA;AACb,CAAC,CACF,CAAA;AAED,MAAM,KAAK,GAAG,EAAE,GAAG,EAAE,EAAE,EAAkB,CAAA;AAEzC,MAAM,eAAe,GAAG,IAAA,qBAAQ,EAAC,UAAU,EACzC,SAAS,EACT,WAAW,GAKZ;IACC,MAAM,YAAY,GAAG;QACnB,qBAAqB;QACrB,mBAAmB;QACnB,eAAe;KAChB,CAAA;IAED,MAAM,CAAC,YAAY,EAAE,eAAe,CAAC,GAAG,IAAA,gBAAQ,EAAC,EAAE,CAAC,CAAA;IACpD,MAAM,CAAC,mBAAmB,EAAE,sBAAsB,CAAC,GAAG,IAAA,gBAAQ,EAAC,EAAE,CAAC,CAAA;IAClE,MAAM,CAAC,gBAAgB,EAAE,mBAAmB,CAAC,GAAG,IAAA,gBAAQ,EAAC,YAAY,CAAC,CAAC,CAAC,CAAC,CAAA;IACzE,MAAM,CAAC,aAAa,EAAE,gBAAgB,CAAC,GAAG,IAAA,gBAAQ,EAAC,KAAK,CAAC,CAAA;IACzD,MAAM,CAAC,WAAW,EAAE,cAAc,CAAC,GAAG,IAAA,gBAAQ,EAAC,KAAK,CAAC,CAAA;IACrD,MAAM,CAAC,WAAW,EAAE,cAAc,CAAC,GAAG,IAAA,gBAAQ,EAAC,KAAK,CAAC,CAAA;IACrD,MAAM,CAAC,cAAc,EAAE,iBAAiB,CAAC,GAAG,IAAA,gBAAQ,EAAC,KAAK,CAAC,CAAA;IAC3D,MAAM,CAAC,kBAAkB,EAAE,qBAAqB,CAAC,GAAG,IAAA,gBAAQ,EAAC,KAAK,CAAC,CAAA;IAEnE,SAAS,cAAc;QACrB,IAAI,YAAY,KAAK,EAAE,EAAE;YACvB,SAAS,CAAC,OAAO,CAAC,MAAM,CAAC,yCAAyC,CAAC,CAAA;SACpE;aAAM;YACL,WAAW,CAAC,KAAK,CAAC,CAAA;YAClB,IAAI,WAAW,CAAA;YACf,IAAI,gBAAgB,KAAK,qBAAqB,EAAE;gBAC9C,WAAW,GAAG;oBACZ,IAAI,EAAE,YAAY;oBAClB,WAAW,EAAE,mBAAmB;oBAChC,QAAQ,EAAE;wBACR,OAAO,EAAE;4BACP,IAAI,EAAE,qBAAqB;4BAC3B,aAAa;4BACb,WAAW;yBACZ;qBACF;iBACF,CAAA;aACF;iBAAM,IAAI,gBAAgB,KAAK,mBAAmB,EAAE;gBACnD,WAAW,GAAG;oBACZ,IAAI,EAAE,YAAY;oBAClB,WAAW,EAAE,mBAAmB;oBAChC,QAAQ,EAAE;wBACR,OAAO,EAAE;4BACP,IAAI,EAAE,mBAAmB;4BACzB,aAAa;4BACb,WAAW;4BACX,WAAW;yBACZ;qBACF;iBACF,CAAA;aACF;iBAAM,IAAI,gBAAgB,KAAK,eAAe,EAAE;gBAC/C,WAAW,GAAG;oBACZ,IAAI,EAAE,YAAY;oBAClB,WAAW,EAAE,mBAAmB;oBAChC,QAAQ,EAAE;wBACR,OAAO,EAAE;4BACP,IAAI,EAAE,eAAe;4BACrB,cAAc;4BACd,kBAAkB;yBACnB;qBACF;iBACF,CAAA;aACF;YACD,SAAS,CAAC,OAAO,CAAC,eAAe,CAAC,WAAW,CAAC,CAAA;YAC9C,SAAS,CAAC,OAAO,CAAC,MAAM,CACtB,sBAAsB,YAAY,wBAAwB,EAC1D,SAAS,CACV,CAAA;SACF;IACH,CAAC;IAED,OAAO,CACL;QACE,8BAAC,gBAAK;YACJ,8BAAC,oBAAS,IACR,EAAE,EAAC,eAAe,EAClB,UAAU,EAAE,EAAE,aAAa,EAAE,eAAe,EAAE,EAC9C,KAAK,EAAC,eAAe,EACrB,UAAU,EAAC,6BAA6B,EACxC,OAAO,EAAC,UAAU,EAClB,KAAK,EAAE,YAAY,EACnB,QAAQ,EAAE,KAAK,CAAC,EAAE,CAAC,eAAe,CAAC,KAAK,CAAC,MAAM,CAAC,KAAK,CAAC,GACtD;YACF,8BAAC,oBAAS,IACR,EAAE,EAAC,eAAe,EAClB,UAAU,EAAE,EAAE,aAAa,EAAE,uBAAuB,EAAE,EACtD,KAAK,EAAC,uBAAuB,EAC7B,UAAU,EAAC,2EAA2E,EACtF,OAAO,EAAC,UAAU,EAClB,KAAK,EAAE,mBAAmB,EAC1B,QAAQ,EAAE,KAAK,CAAC,EAAE,CAAC,sBAAsB,CAAC,KAAK,CAAC,MAAM,CAAC,KAAK,CAAC,GAC7D;YACF,8BAAC,eAAe,IACd,gBAAgB,EAAE,gBAAgB,EAClC,mBAAmB,EAAE,mBAAmB,EACxC,YAAY,EAAE,YAAY,GAC1B;YACF,8BAAC,YAAY,IACX,gBAAgB,EAAE,gBAAgB,EAClC,aAAa,EAAE,aAAa,EAC5B,gBAAgB,EAAE,gBAAgB,EAClC,WAAW,EAAE,WAAW,EACxB,cAAc,EAAE,cAAc,EAC9B,WAAW,EAAE,WAAW,EACxB,cAAc,EAAE,cAAc,EAC9B,cAAc,EAAE,cAAc,EAC9B,iBAAiB,EAAE,iBAAiB,EACpC,kBAAkB,EAAE,kBAAkB,EACtC,qBAAqB,EAAE,qBAAqB,GAC5C,CACI;QACR,8BAAC,iBAAM,IACL,OAAO,EAAC,WAAW,EACnB,KAAK,EAAC,WAAW,EACjB,SAAS,EAAE,8BAAC,aAAO,OAAG,EACtB,OAAO,EAAE,cAAc,0BAGhB,CACL,CACP,CAAA;AACH,CAAC,CAAC,CAAA;AAEF,kBAAe,eAAe,CAAA"}

package/dist/AssemblyManager/AssemblyEditor.js

@@ -7,7 +7,8 @@ const react_1 = __importDefault(require("react"));
 const mobx_react_1 = require("mobx-react");
 const plugin_config_1 = require("@jbrowse/plugin-config");
 const AssemblyEditor = (0, mobx_react_1.observer)(({ assembly, }) => {
-    return react_1.default.createElement(plugin_config_1.ConfigurationEditor, { model: { target: assembly } });
+    return (react_1.default.createElement("div", { style: { maxHeight: 600, overflow: 'auto' } },
+        react_1.default.createElement(plugin_config_1.ConfigurationEditor, { model: { target: assembly } })));
 });
 exports.default = AssemblyEditor;
 //# sourceMappingURL=AssemblyEditor.js.map

package/dist/AssemblyManager/AssemblyEditor.js.map

@@ -1 +1 @@
-{"version":3,"file":"AssemblyEditor.js","sourceRoot":"","sources":["../../src/AssemblyManager/AssemblyEditor.tsx"],"names":[],"mappings":";;;;;AAAA,kDAAyB;AACzB,2CAAqC;AACrC,0DAA4D;AAE5D,MAAM,cAAc,GAAG,IAAA,qBAAQ,EAC7B,CAAC,EACC,QAAQ,GAIT,EAAE,EAAE;IACH,OAAO,8BAAC,mCAAmB,IAAC,KAAK,EAAE,EAAE,MAAM,EAAE,QAAQ,EAAE,GAAI,CAAA;AAC7D,CAAC,CACF,CAAA;AAED,kBAAe,cAAc,CAAA"}
+{"version":3,"file":"AssemblyEditor.js","sourceRoot":"","sources":["../../src/AssemblyManager/AssemblyEditor.tsx"],"names":[],"mappings":";;;;;AAAA,kDAAyB;AACzB,2CAAqC;AACrC,0DAA4D;AAE5D,MAAM,cAAc,GAAG,IAAA,qBAAQ,EAC7B,CAAC,EACC,QAAQ,GAIT,EAAE,EAAE;IACH,OAAO,CACL,uCAAK,KAAK,EAAE,EAAE,SAAS,EAAE,GAAG,EAAE,QAAQ,EAAE,MAAM,EAAE;QAC9C,8BAAC,mCAAmB,IAAC,KAAK,EAAE,EAAE,MAAM,EAAE,QAAQ,EAAE,GAAI,CAChD,CACP,CAAA;AACH,CAAC,CACF,CAAA;AAED,kBAAe,cAAc,CAAA"}

package/dist/AssemblyManager/AssemblyManager.js

@@ -28,70 +28,30 @@ var __importDefault = (this && this.__importDefault) || function (mod) {
 Object.defineProperty(exports, "__esModule", { value: true });
 const react_1 = __importStar(require("react"));
 const mobx_react_1 = require("mobx-react");
-const mui_1 = require("tss-react/mui");
 const material_1 = require("@mui/material");
-const ArrowBackIos_1 = __importDefault(require("@mui/icons-material/ArrowBackIos"));
-const Close_1 = __importDefault(require("@mui/icons-material/Close"));
+const ui_1 = require("@jbrowse/core/ui");
+// icons
 const Add_1 = __importDefault(require("@mui/icons-material/Add"));
+// locals
 const AssemblyTable_1 = __importDefault(require("./AssemblyTable"));
 const AssemblyAddForm_1 = __importDefault(require("./AssemblyAddForm"));
 const AssemblyEditor_1 = __importDefault(require("./AssemblyEditor"));
-const useStyles = (0, mui_1.makeStyles)()(theme => ({
-    titleBox: {
-        color: '#fff',
-        backgroundColor: theme.palette.primary.main,
-        textAlign: 'center',
-    },
-    dialogContent: {
-        width: '100%',
-    },
-    backButton: {
-        color: '#fff',
-        position: 'absolute',
-        left: theme.spacing(4),
-        top: theme.spacing(4),
-    },
-    closeButton: {
-        position: 'absolute',
-        right: theme.spacing(1),
-        top: theme.spacing(1),
-        color: theme.palette.grey[500],
-    },
-}));
-const AssemblyManager = (0, mobx_react_1.observer)(({ rootModel, onClose, }) => {
-    const { classes } = useStyles();
+const AssemblyManager = (0, mobx_react_1.observer)(function ({ rootModel, onClose, }) {
     const [isFormOpen, setFormOpen] = (0, react_1.useState)(false);
     const [isAssemblyBeingEdited, setIsAssemblyBeingEdited] = (0, react_1.useState)(false);
     const [assemblyBeingEdited, setAssemblyBeingEdited] = (0, react_1.useState)();
     const showAssemblyTable = !isFormOpen && !isAssemblyBeingEdited;
-    return (react_1.default.createElement(material_1.Dialog, { open: true, onClose: () => onClose(false) },
-        react_1.default.createElement(material_1.DialogTitle, { className: classes.titleBox },
-            showAssemblyTable ? 'Assembly manager' : null,
-            isFormOpen ? (react_1.default.createElement(react_1.default.Fragment, null,
-                react_1.default.createElement(material_1.IconButton, { "aria-label": "back", className: classes.backButton, onClick: () => setFormOpen(false) },
-                    react_1.default.createElement(ArrowBackIos_1.default, null)),
-                "Add new assembly")) : null,
-            isAssemblyBeingEdited ? (react_1.default.createElement(react_1.default.Fragment, null,
-                react_1.default.createElement(material_1.IconButton, { "aria-label": "back", className: classes.backButton, onClick: () => setIsAssemblyBeingEdited(false) },
-                    react_1.default.createElement(ArrowBackIos_1.default, null)),
-                returnAssemblyName(assemblyBeingEdited))) : null,
-            react_1.default.createElement(material_1.IconButton, { "aria-label": "close", className: classes.closeButton, onClick: () => onClose(false) },
-                react_1.default.createElement(Close_1.default, null))),
+    return (react_1.default.createElement(ui_1.Dialog, { open: true, onClose: () => onClose(false), title: "Assembly manager" },
         react_1.default.createElement(material_1.DialogContent, null,
-            react_1.default.createElement("div", { className: classes.dialogContent },
-                showAssemblyTable ? (react_1.default.createElement(AssemblyTable_1.default, { rootModel: rootModel, setIsAssemblyBeingEdited: setIsAssemblyBeingEdited, setAssemblyBeingEdited: setAssemblyBeingEdited })) : null,
-                isAssemblyBeingEdited ? (react_1.default.createElement(AssemblyEditor_1.default, { assembly: assemblyBeingEdited })) : null,
-                isFormOpen ? (react_1.default.createElement(AssemblyAddForm_1.default, { rootModel: rootModel, setFormOpen: setFormOpen })) : null)),
-        react_1.default.createElement(material_1.DialogActions, null, showAssemblyTable ? (react_1.default.createElement(react_1.default.Fragment, null,
-            react_1.default.createElement(material_1.Button, { color: "secondary", variant: "contained", onClick: () => onClose(false) }, "Close"),
-            react_1.default.createElement(material_1.Button, { variant: "contained", color: "secondary", startIcon: react_1.default.createElement(Add_1.default, null), onClick: () => setFormOpen(true) }, "Add new assembly"))) : null)));
+            showAssemblyTable ? (react_1.default.createElement(AssemblyTable_1.default, { rootModel: rootModel, setIsAssemblyBeingEdited: setIsAssemblyBeingEdited, setAssemblyBeingEdited: setAssemblyBeingEdited })) : null,
+            isAssemblyBeingEdited ? (react_1.default.createElement(AssemblyEditor_1.default, { assembly: assemblyBeingEdited })) : null,
+            isFormOpen ? (react_1.default.createElement(AssemblyAddForm_1.default, { rootModel: rootModel, setFormOpen: setFormOpen })) : null),
+        react_1.default.createElement(material_1.DialogActions, null,
+            isFormOpen ? (react_1.default.createElement(material_1.Button, { variant: "contained", onClick: () => setFormOpen(false) }, "Back")) : null,
+            isAssemblyBeingEdited ? (react_1.default.createElement(material_1.Button, { variant: "contained", onClick: () => setIsAssemblyBeingEdited(false) }, "Back")) : null,
+            showAssemblyTable ? (react_1.default.createElement(react_1.default.Fragment, null,
+                react_1.default.createElement(material_1.Button, { color: "secondary", variant: "contained", onClick: () => onClose(false) }, "Close"),
+                react_1.default.createElement(material_1.Button, { variant: "contained", startIcon: react_1.default.createElement(Add_1.default, null), onClick: () => setFormOpen(true) }, "Add new assembly"))) : null)));
 });
-// eslint-disable-next-line @typescript-eslint/no-explicit-any
-function returnAssemblyName(assembly) {
-    if (assembly !== undefined) {
-        return assembly.name;
-    }
-    return null;
-}
 exports.default = AssemblyManager;
 //# sourceMappingURL=AssemblyManager.js.map

package/dist/AssemblyManager/AssemblyManager.js.map

@@ -1 +1 @@
-{"version":3,"file":"AssemblyManager.js","sourceRoot":"","sources":["../../src/AssemblyManager/AssemblyManager.tsx"],"names":[],"mappings":";;;;;;;;;;;;;;;;;;;;;;;;;;;;AAAA,+CAAuC;AACvC,2CAAqC;AACrC,uCAA0C;AAE1C,4CAOsB;AACtB,oFAA+D;AAC/D,sEAAiD;AACjD,kEAA6C;AAE7C,oEAA2C;AAC3C,wEAA+C;AAC/C,sEAA6C;AAE7C,MAAM,SAAS,GAAG,IAAA,gBAAU,GAAE,CAAC,KAAK,CAAC,EAAE,CAAC,CAAC;IACvC,QAAQ,EAAE;QACR,KAAK,EAAE,MAAM;QACb,eAAe,EAAE,KAAK,CAAC,OAAO,CAAC,OAAO,CAAC,IAAI;QAC3C,SAAS,EAAE,QAAQ;KACpB;IACD,aAAa,EAAE;QACb,KAAK,EAAE,MAAM;KACd;IACD,UAAU,EAAE;QACV,KAAK,EAAE,MAAM;QACb,QAAQ,EAAE,UAAU;QACpB,IAAI,EAAE,KAAK,CAAC,OAAO,CAAC,CAAC,CAAC;QACtB,GAAG,EAAE,KAAK,CAAC,OAAO,CAAC,CAAC,CAAC;KACtB;IACD,WAAW,EAAE;QACX,QAAQ,EAAE,UAAU;QACpB,KAAK,EAAE,KAAK,CAAC,OAAO,CAAC,CAAC,CAAC;QACvB,GAAG,EAAE,KAAK,CAAC,OAAO,CAAC,CAAC,CAAC;QACrB,KAAK,EAAE,KAAK,CAAC,OAAO,CAAC,IAAI,CAAC,GAAG,CAAC;KAC/B;CACF,CAAC,CAAC,CAAA;AAEH,MAAM,eAAe,GAAG,IAAA,qBAAQ,EAC9B,CAAC,EACC,SAAS,EACT,OAAO,GAKR,EAAE,EAAE;IACH,MAAM,EAAE,OAAO,EAAE,GAAG,SAAS,EAAE,CAAA;IAC/B,MAAM,CAAC,UAAU,EAAE,WAAW,CAAC,GAAG,IAAA,gBAAQ,EAAC,KAAK,CAAC,CAAA;IACjD,MAAM,CAAC,qBAAqB,EAAE,wBAAwB,CAAC,GAAG,IAAA,gBAAQ,EAAC,KAAK,CAAC,CAAA;IACzE,MAAM,CAAC,mBAAmB,EAAE,sBAAsB,CAAC,GACjD,IAAA,gBAAQ,GAAyB,CAAA;IAEnC,MAAM,iBAAiB,GAAG,CAAC,UAAU,IAAI,CAAC,qBAAqB,CAAA;IAE/D,OAAO,CACL,8BAAC,iBAAM,IAAC,IAAI,QAAC,OAAO,EAAE,GAAG,EAAE,CAAC,OAAO,CAAC,KAAK,CAAC;QACxC,8BAAC,sBAAW,IAAC,SAAS,EAAE,OAAO,CAAC,QAAQ;YACrC,iBAAiB,CAAC,CAAC,CAAC,kBAAkB,CAAC,CAAC,CAAC,IAAI;YAC7C,UAAU,CAAC,CAAC,CAAC,CACZ;gBACE,8BAAC,qBAAU,kBACE,MAAM,EACjB,SAAS,EAAE,OAAO,CAAC,UAAU,EAC7B,OAAO,EAAE,GAAG,EAAE,CAAC,WAAW,CAAC,KAAK,CAAC;oBAEjC,8BAAC,sBAAgB,OAAG,CACT;mCAEZ,CACJ,CAAC,CAAC,CAAC,IAAI;YACP,qBAAqB,CAAC,CAAC,CAAC,CACvB;gBACE,8BAAC,qBAAU,kBACE,MAAM,EACjB,SAAS,EAAE,OAAO,CAAC,UAAU,EAC7B,OAAO,EAAE,GAAG,EAAE,CAAC,wBAAwB,CAAC,KAAK,CAAC;oBAE9C,8BAAC,sBAAgB,OAAG,CACT;gBACZ,kBAAkB,CAAC,mBAAmB,CAAC,CACvC,CACJ,CAAC,CAAC,CAAC,IAAI;YACR,8BAAC,qBAAU,kBACE,OAAO,EAClB,SAAS,EAAE,OAAO,CAAC,WAAW,EAC9B,OAAO,EAAE,GAAG,EAAE,CAAC,OAAO,CAAC,KAAK,CAAC;gBAE7B,8BAAC,eAAS,OAAG,CACF,CACD;QACd,8BAAC,wBAAa;YACZ,uCAAK,SAAS,EAAE,OAAO,CAAC,aAAa;gBAClC,iBAAiB,CAAC,CAAC,CAAC,CACnB,8BAAC,uBAAa,IACZ,SAAS,EAAE,SAAS,EACpB,wBAAwB,EAAE,wBAAwB,EAClD,sBAAsB,EAAE,sBAAsB,GAC9C,CACH,CAAC,CAAC,CAAC,IAAI;gBACP,qBAAqB,CAAC,CAAC,CAAC,CACvB,8BAAC,wBAAc,IAAC,QAAQ,EAAE,mBAAmB,GAAI,CAClD,CAAC,CAAC,CAAC,IAAI;gBACP,UAAU,CAAC,CAAC,CAAC,CACZ,8BAAC,yBAAe,IACd,SAAS,EAAE,SAAS,EACpB,WAAW,EAAE,WAAW,GACxB,CACH,CAAC,CAAC,CAAC,IAAI,CACJ,CACQ;QAChB,8BAAC,wBAAa,QACX,iBAAiB,CAAC,CAAC,CAAC,CACnB;YACE,8BAAC,iBAAM,IACL,KAAK,EAAC,WAAW,EACjB,OAAO,EAAC,WAAW,EACnB,OAAO,EAAE,GAAG,EAAE,CAAC,OAAO,CAAC,KAAK,CAAC,YAGtB;YACT,8BAAC,iBAAM,IACL,OAAO,EAAC,WAAW,EACnB,KAAK,EAAC,WAAW,EACjB,SAAS,EAAE,8BAAC,aAAO,OAAG,EACtB,OAAO,EAAE,GAAG,EAAE,CAAC,WAAW,CAAC,IAAI,CAAC,uBAGzB,CACR,CACJ,CAAC,CAAC,CAAC,IAAI,CACM,CACT,CACV,CAAA;AACH,CAAC,CACF,CAAA;AAED,8DAA8D;AAC9D,SAAS,kBAAkB,CAAC,QAAa;IACvC,IAAI,QAAQ,KAAK,SAAS,EAAE;QAC1B,OAAO,QAAQ,CAAC,IAAI,CAAA;KACrB;IACD,OAAO,IAAI,CAAA;AACb,CAAC;AAED,kBAAe,eAAe,CAAA"}
+{"version":3,"file":"AssemblyManager.js","sourceRoot":"","sources":["../../src/AssemblyManager/AssemblyManager.tsx"],"names":[],"mappings":";;;;;;;;;;;;;;;;;;;;;;;;;;;;AAAA,+CAAuC;AACvC,2CAAqC;AAErC,4CAAoE;AACpE,yCAAyC;AAEzC,QAAQ;AACR,kEAA6C;AAE7C,SAAS;AACT,oEAA2C;AAC3C,wEAA+C;AAC/C,sEAA6C;AAE7C,MAAM,eAAe,GAAG,IAAA,qBAAQ,EAAC,UAAU,EACzC,SAAS,EACT,OAAO,GAKR;IACC,MAAM,CAAC,UAAU,EAAE,WAAW,CAAC,GAAG,IAAA,gBAAQ,EAAC,KAAK,CAAC,CAAA;IACjD,MAAM,CAAC,qBAAqB,EAAE,wBAAwB,CAAC,GAAG,IAAA,gBAAQ,EAAC,KAAK,CAAC,CAAA;IACzE,MAAM,CAAC,mBAAmB,EAAE,sBAAsB,CAAC,GACjD,IAAA,gBAAQ,GAAyB,CAAA;IAEnC,MAAM,iBAAiB,GAAG,CAAC,UAAU,IAAI,CAAC,qBAAqB,CAAA;IAE/D,OAAO,CACL,8BAAC,WAAM,IAAC,IAAI,QAAC,OAAO,EAAE,GAAG,EAAE,CAAC,OAAO,CAAC,KAAK,CAAC,EAAE,KAAK,EAAC,kBAAkB;QAClE,8BAAC,wBAAa;YACX,iBAAiB,CAAC,CAAC,CAAC,CACnB,8BAAC,uBAAa,IACZ,SAAS,EAAE,SAAS,EACpB,wBAAwB,EAAE,wBAAwB,EAClD,sBAAsB,EAAE,sBAAsB,GAC9C,CACH,CAAC,CAAC,CAAC,IAAI;YACP,qBAAqB,CAAC,CAAC,CAAC,CACvB,8BAAC,wBAAc,IAAC,QAAQ,EAAE,mBAAmB,GAAI,CAClD,CAAC,CAAC,CAAC,IAAI;YACP,UAAU,CAAC,CAAC,CAAC,CACZ,8BAAC,yBAAe,IAAC,SAAS,EAAE,SAAS,EAAE,WAAW,EAAE,WAAW,GAAI,CACpE,CAAC,CAAC,CAAC,IAAI,CACM;QAChB,8BAAC,wBAAa;YACX,UAAU,CAAC,CAAC,CAAC,CACZ,8BAAC,iBAAM,IAAC,OAAO,EAAC,WAAW,EAAC,OAAO,EAAE,GAAG,EAAE,CAAC,WAAW,CAAC,KAAK,CAAC,WAEpD,CACV,CAAC,CAAC,CAAC,IAAI;YACP,qBAAqB,CAAC,CAAC,CAAC,CACvB,8BAAC,iBAAM,IACL,OAAO,EAAC,WAAW,EACnB,OAAO,EAAE,GAAG,EAAE,CAAC,wBAAwB,CAAC,KAAK,CAAC,WAGvC,CACV,CAAC,CAAC,CAAC,IAAI;YACP,iBAAiB,CAAC,CAAC,CAAC,CACnB;gBACE,8BAAC,iBAAM,IACL,KAAK,EAAC,WAAW,EACjB,OAAO,EAAC,WAAW,EACnB,OAAO,EAAE,GAAG,EAAE,CAAC,OAAO,CAAC,KAAK,CAAC,YAGtB;gBACT,8BAAC,iBAAM,IACL,OAAO,EAAC,WAAW,EACnB,SAAS,EAAE,8BAAC,aAAO,OAAG,EACtB,OAAO,EAAE,GAAG,EAAE,CAAC,WAAW,CAAC,IAAI,CAAC,uBAGzB,CACR,CACJ,CAAC,CAAC,CAAC,IAAI,CACM,CACT,CACV,CAAA;AACH,CAAC,CAAC,CAAA;AAEF,kBAAe,eAAe,CAAA"}

package/dist/AssemblyManager/AssemblyTable.js

@@ -6,62 +6,39 @@ Object.defineProperty(exports, "__esModule", { value: true });
 const react_1 = __importDefault(require("react"));
 const mobx_react_1 = require("mobx-react");
 const material_1 = require("@mui/material");
-const mui_1 = require("tss-react/mui");
+const configuration_1 = require("@jbrowse/core/configuration");
 const Create_1 = __importDefault(require("@mui/icons-material/Create"));
 const Delete_1 = __importDefault(require("@mui/icons-material/Delete"));
-const configuration_1 = require("@jbrowse/core/configuration");
-const useStyles = (0, mui_1.makeStyles)()(() => ({
-    table: {
-        minWidth: 500,
-        minHeight: 150,
-    },
-    buttonCell: {
-        padding: 3,
-    },
-    button: {
-        display: 'inline-block',
-        padding: 3,
-        minHeight: 0,
-        minWidth: 0,
-    },
-}));
-const AssemblyTable = (0, mobx_react_1.observer)(({ rootModel, setIsAssemblyBeingEdited, setAssemblyBeingEdited, }) => {
-    const { classes } = useStyles();
+const AssemblyTable = (0, mobx_react_1.observer)(function ({ rootModel, setIsAssemblyBeingEdited, setAssemblyBeingEdited, }) {
     function removeAssembly(name) {
         rootModel.jbrowse.removeAssemblyConf(name);
     }
-    const rows = rootModel.jbrowse.assemblies.map(assembly => {
-        const name = (0, configuration_1.readConfObject)(assembly, 'name');
-        const displayName = (0, configuration_1.readConfObject)(assembly, 'displayName');
-        const aliases = (0, configuration_1.readConfObject)(assembly, 'aliases');
-        return (react_1.default.createElement(material_1.TableRow, { key: name },
-            react_1.default.createElement(material_1.TableCell, null, name),
-            react_1.default.createElement(material_1.TableCell, null, displayName),
-            react_1.default.createElement(material_1.TableCell, null, aliases ? aliases.toString() : ''),
-            react_1.default.createElement(material_1.TableCell, { className: classes.buttonCell },
-                react_1.default.createElement(material_1.IconButton, { "data-testid": `${name}-edit`, className: classes.button, onClick: () => {
-                        setIsAssemblyBeingEdited(true);
-                        setAssemblyBeingEdited(assembly);
-                    } },
-                    react_1.default.createElement(Create_1.default, { color: "primary" })),
-                react_1.default.createElement(material_1.IconButton, { "data-testid": `${name}-delete`, className: classes.button, onClick: () => {
-                        removeAssembly(name);
-                    } },
-                    react_1.default.createElement(Delete_1.default, { color: "error" })))));
-    });
+    const { assemblies } = rootModel.jbrowse;
     return (react_1.default.createElement(material_1.TableContainer, { component: material_1.Paper },
-        react_1.default.createElement(material_1.Table, { className: classes.table },
+        react_1.default.createElement(material_1.Table, null,
             react_1.default.createElement(material_1.TableHead, null,
                 react_1.default.createElement(material_1.TableRow, null,
+                    react_1.default.createElement(material_1.TableCell, null, "Name"),
+                    react_1.default.createElement(material_1.TableCell, null, "Display name"),
+                    react_1.default.createElement(material_1.TableCell, null, "Aliases"),
+                    react_1.default.createElement(material_1.TableCell, null, "Actions"))),
+            react_1.default.createElement(material_1.TableBody, null, assemblies.map(assembly => {
+                const name = (0, configuration_1.readConfObject)(assembly, 'name');
+                const displayName = (0, configuration_1.readConfObject)(assembly, 'displayName');
+                const aliases = (0, configuration_1.readConfObject)(assembly, 'aliases');
+                return (react_1.default.createElement(material_1.TableRow, { key: name },
+                    react_1.default.createElement(material_1.TableCell, null, name),
+                    react_1.default.createElement(material_1.TableCell, null, displayName),
+                    react_1.default.createElement(material_1.TableCell, null, aliases ? aliases.toString() : ''),
                     react_1.default.createElement(material_1.TableCell, null,
-                        react_1.default.createElement(material_1.Typography, { variant: "h5" }, "Name")),
-                    react_1.default.createElement(material_1.TableCell, null,
-                        react_1.default.createElement(material_1.Typography, { variant: "h5" }, "Display name")),
-                    react_1.default.createElement(material_1.TableCell, null,
-                        react_1.default.createElement(material_1.Typography, { variant: "h5" }, "Aliases")),
-                    react_1.default.createElement(material_1.TableCell, null,
-                        react_1.default.createElement(material_1.Typography, { variant: "h5" }, "Actions")))),
-            react_1.default.createElement(material_1.TableBody, null, rows))));
+                        react_1.default.createElement(material_1.IconButton, { "data-testid": `${name}-edit`, onClick: () => {
+                                setIsAssemblyBeingEdited(true);
+                                setAssemblyBeingEdited(assembly);
+                            } },
+                            react_1.default.createElement(Create_1.default, { color: "primary" })),
+                        react_1.default.createElement(material_1.IconButton, { "data-testid": `${name}-delete`, onClick: () => removeAssembly(name) },
+                            react_1.default.createElement(Delete_1.default, { color: "error" })))));
+            })))));
 });
 exports.default = AssemblyTable;
 //# sourceMappingURL=AssemblyTable.js.map

package/dist/AssemblyManager/AssemblyTable.js.map

@@ -1 +1 @@
-{"version":3,"file":"AssemblyTable.js","sourceRoot":"","sources":["../../src/AssemblyManager/AssemblyTable.tsx"],"names":[],"mappings":";;;;;AAAA,kDAAyB;AACzB,2CAAqC;AACrC,4CAUsB;AACtB,uCAA0C;AAE1C,wEAAmD;AACnD,wEAAmD;AACnD,+DAGoC;AAEpC,MAAM,SAAS,GAAG,IAAA,gBAAU,GAAE,CAAC,GAAG,EAAE,CAAC,CAAC;IACpC,KAAK,EAAE;QACL,QAAQ,EAAE,GAAG;QACb,SAAS,EAAE,GAAG;KACf;IACD,UAAU,EAAE;QACV,OAAO,EAAE,CAAC;KACX;IACD,MAAM,EAAE;QACN,OAAO,EAAE,cAAc;QACvB,OAAO,EAAE,CAAC;QACV,SAAS,EAAE,CAAC;QACZ,QAAQ,EAAE,CAAC;KACZ;CACF,CAAC,CAAC,CAAA;AAEH,MAAM,aAAa,GAAG,IAAA,qBAAQ,EAC5B,CAAC,EACC,SAAS,EACT,wBAAwB,EACxB,sBAAsB,GAUvB,EAAE,EAAE;IACH,MAAM,EAAE,OAAO,EAAE,GAAG,SAAS,EAAE,CAAA;IAE/B,SAAS,cAAc,CAAC,IAAY;QAClC,SAAS,CAAC,OAAO,CAAC,kBAAkB,CAAC,IAAI,CAAC,CAAA;IAC5C,CAAC;IAED,MAAM,IAAI,GAAG,SAAS,CAAC,OAAO,CAAC,UAAU,CAAC,GAAG,CAAC,QAAQ,CAAC,EAAE;QACvD,MAAM,IAAI,GAAG,IAAA,8BAAc,EAAC,QAAQ,EAAE,MAAM,CAAC,CAAA;QAC7C,MAAM,WAAW,GAAG,IAAA,8BAAc,EAAC,QAAQ,EAAE,aAAa,CAAC,CAAA;QAC3D,MAAM,OAAO,GAAG,IAAA,8BAAc,EAAC,QAAQ,EAAE,SAAS,CAAC,CAAA;QACnD,OAAO,CACL,8BAAC,mBAAQ,IAAC,GAAG,EAAE,IAAI;YACjB,8BAAC,oBAAS,QAAE,IAAI,CAAa;YAC7B,8BAAC,oBAAS,QAAE,WAAW,CAAa;YACpC,8BAAC,oBAAS,QAAE,OAAO,CAAC,CAAC,CAAC,OAAO,CAAC,QAAQ,EAAE,CAAC,CAAC,CAAC,EAAE,CAAa;YAC1D,8BAAC,oBAAS,IAAC,SAAS,EAAE,OAAO,CAAC,UAAU;gBACtC,8BAAC,qBAAU,mBACI,GAAG,IAAI,OAAO,EAC3B,SAAS,EAAE,OAAO,CAAC,MAAM,EACzB,OAAO,EAAE,GAAG,EAAE;wBACZ,wBAAwB,CAAC,IAAI,CAAC,CAAA;wBAC9B,sBAAsB,CAAC,QAAQ,CAAC,CAAA;oBAClC,CAAC;oBAED,8BAAC,gBAAU,IAAC,KAAK,EAAC,SAAS,GAAG,CACnB;gBACb,8BAAC,qBAAU,mBACI,GAAG,IAAI,SAAS,EAC7B,SAAS,EAAE,OAAO,CAAC,MAAM,EACzB,OAAO,EAAE,GAAG,EAAE;wBACZ,cAAc,CAAC,IAAI,CAAC,CAAA;oBACtB,CAAC;oBAED,8BAAC,gBAAU,IAAC,KAAK,EAAC,OAAO,GAAG,CACjB,CACH,CACH,CACZ,CAAA;IACH,CAAC,CAAC,CAAA;IAEF,OAAO,CACL,8BAAC,yBAAc,IAAC,SAAS,EAAE,gBAAK;QAC9B,8BAAC,gBAAK,IAAC,SAAS,EAAE,OAAO,CAAC,KAAK;YAC7B,8BAAC,oBAAS;gBACR,8BAAC,mBAAQ;oBACP,8BAAC,oBAAS;wBACR,8BAAC,qBAAU,IAAC,OAAO,EAAC,IAAI,WAAkB,CAChC;oBACZ,8BAAC,oBAAS;wBACR,8BAAC,qBAAU,IAAC,OAAO,EAAC,IAAI,mBAA0B,CACxC;oBACZ,8BAAC,oBAAS;wBACR,8BAAC,qBAAU,IAAC,OAAO,EAAC,IAAI,cAAqB,CACnC;oBACZ,8BAAC,oBAAS;wBACR,8BAAC,qBAAU,IAAC,OAAO,EAAC,IAAI,cAAqB,CACnC,CACH,CACD;YACZ,8BAAC,oBAAS,QAAE,IAAI,CAAa,CACvB,CACO,CAClB,CAAA;AACH,CAAC,CACF,CAAA;AAED,kBAAe,aAAa,CAAA"}
+{"version":3,"file":"AssemblyTable.js","sourceRoot":"","sources":["../../src/AssemblyManager/AssemblyTable.tsx"],"names":[],"mappings":";;;;;AAAA,kDAAyB;AACzB,2CAAqC;AACrC,4CASsB;AACtB,+DAGoC;AAEpC,wEAAmD;AACnD,wEAAmD;AAEnD,MAAM,aAAa,GAAG,IAAA,qBAAQ,EAAC,UAAU,EACvC,SAAS,EACT,wBAAwB,EACxB,sBAAsB,GAUvB;IACC,SAAS,cAAc,CAAC,IAAY;QAClC,SAAS,CAAC,OAAO,CAAC,kBAAkB,CAAC,IAAI,CAAC,CAAA;IAC5C,CAAC;IAED,MAAM,EAAE,UAAU,EAAE,GAAG,SAAS,CAAC,OAAO,CAAA;IAExC,OAAO,CACL,8BAAC,yBAAc,IAAC,SAAS,EAAE,gBAAK;QAC9B,8BAAC,gBAAK;YACJ,8BAAC,oBAAS;gBACR,8BAAC,mBAAQ;oBACP,8BAAC,oBAAS,eAAiB;oBAC3B,8BAAC,oBAAS,uBAAyB;oBACnC,8BAAC,oBAAS,kBAAoB;oBAC9B,8BAAC,oBAAS,kBAAoB,CACrB,CACD;YACZ,8BAAC,oBAAS,QACP,UAAU,CAAC,GAAG,CAAC,QAAQ,CAAC,EAAE;gBACzB,MAAM,IAAI,GAAG,IAAA,8BAAc,EAAC,QAAQ,EAAE,MAAM,CAAC,CAAA;gBAC7C,MAAM,WAAW,GAAG,IAAA,8BAAc,EAAC,QAAQ,EAAE,aAAa,CAAC,CAAA;gBAC3D,MAAM,OAAO,GAAG,IAAA,8BAAc,EAAC,QAAQ,EAAE,SAAS,CAAC,CAAA;gBACnD,OAAO,CACL,8BAAC,mBAAQ,IAAC,GAAG,EAAE,IAAI;oBACjB,8BAAC,oBAAS,QAAE,IAAI,CAAa;oBAC7B,8BAAC,oBAAS,QAAE,WAAW,CAAa;oBACpC,8BAAC,oBAAS,QAAE,OAAO,CAAC,CAAC,CAAC,OAAO,CAAC,QAAQ,EAAE,CAAC,CAAC,CAAC,EAAE,CAAa;oBAC1D,8BAAC,oBAAS;wBACR,8BAAC,qBAAU,mBACI,GAAG,IAAI,OAAO,EAC3B,OAAO,EAAE,GAAG,EAAE;gCACZ,wBAAwB,CAAC,IAAI,CAAC,CAAA;gCAC9B,sBAAsB,CAAC,QAAQ,CAAC,CAAA;4BAClC,CAAC;4BAED,8BAAC,gBAAU,IAAC,KAAK,EAAC,SAAS,GAAG,CACnB;wBACb,8BAAC,qBAAU,mBACI,GAAG,IAAI,SAAS,EAC7B,OAAO,EAAE,GAAG,EAAE,CAAC,cAAc,CAAC,IAAI,CAAC;4BAEnC,8BAAC,gBAAU,IAAC,KAAK,EAAC,OAAO,GAAG,CACjB,CACH,CACH,CACZ,CAAA;YACH,CAAC,CAAC,CACQ,CACN,CACO,CAClB,CAAA;AACH,CAAC,CAAC,CAAA;AAEF,kBAAe,aAAa,CAAA"}

package/dist/HierarchicalTrackSelectorWidget/components/ManageConnectionsDialog.js

@@ -5,17 +5,13 @@ var __importDefault = (this && this.__importDefault) || function (mod) {
 Object.defineProperty(exports, "__esModule", { value: true });
 const react_1 = __importDefault(require("react"));
 const material_1 = require("@mui/material");
+const ui_1 = require("@jbrowse/core/ui");
 const mui_1 = require("tss-react/mui");
-const Close_1 = __importDefault(require("@mui/icons-material/Close"));
 const mobx_react_1 = require("mobx-react");
 const configuration_1 = require("@jbrowse/core/configuration");
+// icons
+const Close_1 = __importDefault(require("@mui/icons-material/Close"));
 const useStyles = (0, mui_1.makeStyles)()(theme => ({
-    closeButton: {
-        position: 'absolute',
-        right: theme.spacing(1),
-        top: theme.spacing(1),
-        color: theme.palette.grey[500],
-    },
     connectionContainer: {
         margin: theme.spacing(4),
         width: 500,
@@ -24,11 +20,7 @@ const useStyles = (0, mui_1.makeStyles)()(theme => ({
 function ManageConnectionsDlg({ session, handleClose, breakConnection, }) {
     const { classes } = useStyles();
     const { adminMode, connections, sessionConnections } = session;
-    return (react_1.default.createElement(material_1.Dialog, { open: true, onClose: handleClose, maxWidth: "lg" },
-        react_1.default.createElement(material_1.DialogTitle, null,
-            "Delete connections",
-            react_1.default.createElement(material_1.IconButton, { className: classes.closeButton, onClick: () => handleClose() },
-                react_1.default.createElement(Close_1.default, null))),
+    return (react_1.default.createElement(ui_1.Dialog, { open: true, onClose: handleClose, maxWidth: "lg", title: "Delete connections" },
         react_1.default.createElement(material_1.DialogContent, null,
             react_1.default.createElement(material_1.Typography, null, "Click the X icon to delete the connection from your config completely"),
             react_1.default.createElement("div", { className: classes.connectionContainer },

package/dist/HierarchicalTrackSelectorWidget/components/ManageConnectionsDialog.js.map

@@ -1 +1 @@
-{"version":3,"file":"ManageConnectionsDialog.js","sourceRoot":"","sources":["../../../src/HierarchicalTrackSelectorWidget/components/ManageConnectionsDialog.tsx"],"names":[],"mappings":";;;;;AAAA,kDAAyB;AACzB,4CASsB;AACtB,uCAA0C;AAC1C,sEAAiD;AACjD,2CAAqC;AACrC,+DAGoC;AAGpC,MAAM,SAAS,GAAG,IAAA,gBAAU,GAAE,CAAC,KAAK,CAAC,EAAE,CAAC,CAAC;IACvC,WAAW,EAAE;QACX,QAAQ,EAAE,UAAU;QACpB,KAAK,EAAE,KAAK,CAAC,OAAO,CAAC,CAAC,CAAC;QACvB,GAAG,EAAE,KAAK,CAAC,OAAO,CAAC,CAAC,CAAC;QACrB,KAAK,EAAE,KAAK,CAAC,OAAO,CAAC,IAAI,CAAC,GAAG,CAAC;KAC/B;IAED,mBAAmB,EAAE;QACnB,MAAM,EAAE,KAAK,CAAC,OAAO,CAAC,CAAC,CAAC;QACxB,KAAK,EAAE,GAAG;KACX;CACF,CAAC,CAAC,CAAA;AAEH,SAAS,oBAAoB,CAAC,EAC5B,OAAO,EACP,WAAW,EACX,eAAe,GAKhB;IACC,MAAM,EAAE,OAAO,EAAE,GAAG,SAAS,EAAE,CAAA;IAC/B,MAAM,EAAE,SAAS,EAAE,WAAW,EAAE,kBAAkB,EAAE,GAAG,OAAO,CAAA;IAC9D,OAAO,CACL,8BAAC,iBAAM,IAAC,IAAI,QAAC,OAAO,EAAE,WAAW,EAAE,QAAQ,EAAC,IAAI;QAC9C,8BAAC,sBAAW;;YAEV,8BAAC,qBAAU,IACT,SAAS,EAAE,OAAO,CAAC,WAAW,EAC9B,OAAO,EAAE,GAAG,EAAE,CAAC,WAAW,EAAE;gBAE5B,8BAAC,eAAS,OAAG,CACF,CACD;QACd,8BAAC,wBAAa;YACZ,8BAAC,qBAAU,gFAEE;YACb,uCAAK,SAAS,EAAE,OAAO,CAAC,mBAAmB;gBACxC,WAAW,CAAC,GAAG,CAAC,IAAI,CAAC,EAAE;oBACtB,MAAM,IAAI,GAAG,IAAA,8BAAc,EAAC,IAAI,EAAE,MAAM,CAAC,CAAA;oBACzC,OAAO,CACL,8BAAC,qBAAU,IAAC,GAAG,EAAE,QAAQ,IAAI,EAAE;wBAC5B,SAAS,KAAI,kBAAkB,aAAlB,kBAAkB,uBAAlB,kBAAkB,CAAE,QAAQ,CAAC,IAAI,CAAC,CAAA,CAAC,CAAC,CAAC,CACjD,8BAAC,qBAAU,IAAC,OAAO,EAAE,GAAG,EAAE,CAAC,eAAe,CAAC,IAAI,EAAE,IAAI,CAAC;4BACpD,8BAAC,eAAS,IAAC,KAAK,EAAC,OAAO,GAAG,CAChB,CACd,CAAC,CAAC,CAAC,CACF,8BAAC,kBAAO,IAAC,KAAK,EAAC,8DAA8D;4BAC3E,8BAAC,qBAAU;gCACT,8BAAC,eAAS,IAAC,KAAK,EAAC,UAAU,GAAG,CACnB,CACL,CACX;wBACA,IAAI,CACM,CACd,CAAA;gBACH,CAAC,CAAC;gBACD,CAAC,WAAW,CAAC,MAAM,CAAC,CAAC,CAAC,CACrB,8BAAC,qBAAU,+BAAkC,CAC9C,CAAC,CAAC,CAAC,IAAI,CACJ,CACQ;QAChB,8BAAC,wBAAa;YACZ,8BAAC,iBAAM,IACL,OAAO,EAAE,GAAG,EAAE,CAAC,WAAW,EAAE,EAC5B,OAAO,EAAC,WAAW,EACnB,KAAK,EAAC,SAAS,YAGR,CACK,CACT,CACV,CAAA;AACH,CAAC;AAED,kBAAe,IAAA,qBAAQ,EAAC,oBAAoB,CAAC,CAAA"}
+{"version":3,"file":"ManageConnectionsDialog.js","sourceRoot":"","sources":["../../../src/HierarchicalTrackSelectorWidget/components/ManageConnectionsDialog.tsx"],"names":[],"mappings":";;;;;AAAA,kDAAyB;AACzB,4CAOsB;AACtB,yCAAyC;AACzC,uCAA0C;AAC1C,2CAAqC;AACrC,+DAGoC;AAGpC,QAAQ;AACR,sEAAiD;AAEjD,MAAM,SAAS,GAAG,IAAA,gBAAU,GAAE,CAAC,KAAK,CAAC,EAAE,CAAC,CAAC;IACvC,mBAAmB,EAAE;QACnB,MAAM,EAAE,KAAK,CAAC,OAAO,CAAC,CAAC,CAAC;QACxB,KAAK,EAAE,GAAG;KACX;CACF,CAAC,CAAC,CAAA;AAEH,SAAS,oBAAoB,CAAC,EAC5B,OAAO,EACP,WAAW,EACX,eAAe,GAKhB;IACC,MAAM,EAAE,OAAO,EAAE,GAAG,SAAS,EAAE,CAAA;IAC/B,MAAM,EAAE,SAAS,EAAE,WAAW,EAAE,kBAAkB,EAAE,GAAG,OAAO,CAAA;IAC9D,OAAO,CACL,8BAAC,WAAM,IAAC,IAAI,QAAC,OAAO,EAAE,WAAW,EAAE,QAAQ,EAAC,IAAI,EAAC,KAAK,EAAC,oBAAoB;QACzE,8BAAC,wBAAa;YACZ,8BAAC,qBAAU,gFAEE;YACb,uCAAK,SAAS,EAAE,OAAO,CAAC,mBAAmB;gBACxC,WAAW,CAAC,GAAG,CAAC,IAAI,CAAC,EAAE;oBACtB,MAAM,IAAI,GAAG,IAAA,8BAAc,EAAC,IAAI,EAAE,MAAM,CAAC,CAAA;oBACzC,OAAO,CACL,8BAAC,qBAAU,IAAC,GAAG,EAAE,QAAQ,IAAI,EAAE;wBAC5B,SAAS,KAAI,kBAAkB,aAAlB,kBAAkB,uBAAlB,kBAAkB,CAAE,QAAQ,CAAC,IAAI,CAAC,CAAA,CAAC,CAAC,CAAC,CACjD,8BAAC,qBAAU,IAAC,OAAO,EAAE,GAAG,EAAE,CAAC,eAAe,CAAC,IAAI,EAAE,IAAI,CAAC;4BACpD,8BAAC,eAAS,IAAC,KAAK,EAAC,OAAO,GAAG,CAChB,CACd,CAAC,CAAC,CAAC,CACF,8BAAC,kBAAO,IAAC,KAAK,EAAC,8DAA8D;4BAC3E,8BAAC,qBAAU;gCACT,8BAAC,eAAS,IAAC,KAAK,EAAC,UAAU,GAAG,CACnB,CACL,CACX;wBACA,IAAI,CACM,CACd,CAAA;gBACH,CAAC,CAAC;gBACD,CAAC,WAAW,CAAC,MAAM,CAAC,CAAC,CAAC,CACrB,8BAAC,qBAAU,+BAAkC,CAC9C,CAAC,CAAC,CAAC,IAAI,CACJ,CACQ;QAChB,8BAAC,wBAAa;YACZ,8BAAC,iBAAM,IACL,OAAO,EAAE,GAAG,EAAE,CAAC,WAAW,EAAE,EAC5B,OAAO,EAAC,WAAW,EACnB,KAAK,EAAC,SAAS,YAGR,CACK,CACT,CACV,CAAA;AACH,CAAC;AAED,kBAAe,IAAA,qBAAQ,EAAC,oBAAoB,CAAC,CAAA"}

package/dist/HierarchicalTrackSelectorWidget/components/ToggleConnectionsDialog.js

@@ -6,8 +6,8 @@ Object.defineProperty(exports, "__esModule", { value: true });
 exports.ellipses = void 0;
 const react_1 = __importDefault(require("react"));
 const material_1 = require("@mui/material");
+const ui_1 = require("@jbrowse/core/ui");
 const mui_1 = require("tss-react/mui");
-const Close_1 = __importDefault(require("@mui/icons-material/Close"));
 const mobx_react_1 = require("mobx-react");
 const configuration_1 = require("@jbrowse/core/configuration");
 function ellipses(slug) {
@@ -15,12 +15,6 @@ function ellipses(slug) {
 }
 exports.ellipses = ellipses;
 const useStyles = (0, mui_1.makeStyles)()(theme => ({
-    closeButton: {
-        position: 'absolute',
-        right: theme.spacing(1),
-        top: theme.spacing(1),
-        color: theme.palette.grey[500],
-    },
     connectionContainer: {
         width: 500,
         margin: theme.spacing(4),
@@ -29,11 +23,7 @@ const useStyles = (0, mui_1.makeStyles)()(theme => ({
 function ToggleConnectionDialog({ session, handleClose, breakConnection, }) {
     const { classes } = useStyles();
     const { connections, connectionInstances: instances = [] } = session;
-    return (react_1.default.createElement(material_1.Dialog, { open: true, onClose: handleClose, maxWidth: "lg" },
-        react_1.default.createElement(material_1.DialogTitle, null,
-            "Turn on/off connections",
-            react_1.default.createElement(material_1.IconButton, { className: classes.closeButton, onClick: () => handleClose() },
-                react_1.default.createElement(Close_1.default, null))),
+    return (react_1.default.createElement(ui_1.Dialog, { open: true, onClose: handleClose, maxWidth: "lg", title: "Turn on/off connections" },
         react_1.default.createElement(material_1.DialogContent, null,
             react_1.default.createElement(material_1.Typography, null, "Use the checkbox to turn on/off connections"),
             react_1.default.createElement("div", { className: classes.connectionContainer },

package/dist/HierarchicalTrackSelectorWidget/components/ToggleConnectionsDialog.js.map

@@ -1 +1 @@
-{"version":3,"file":"ToggleConnectionsDialog.js","sourceRoot":"","sources":["../../../src/HierarchicalTrackSelectorWidget/components/ToggleConnectionsDialog.tsx"],"names":[],"mappings":";;;;;;AAAA,kDAAyB;AACzB,4CAUsB;AACtB,uCAA0C;AAC1C,sEAAiD;AACjD,2CAAqC;AACrC,+DAGoC;AAGpC,SAAgB,QAAQ,CAAC,IAAY;IACnC,OAAO,IAAI,CAAC,MAAM,GAAG,EAAE,CAAC,CAAC,CAAC,GAAG,IAAI,CAAC,KAAK,CAAC,CAAC,EAAE,EAAE,CAAC,KAAK,CAAC,CAAC,CAAC,IAAI,CAAA;AAC5D,CAAC;AAFD,4BAEC;AAED,MAAM,SAAS,GAAG,IAAA,gBAAU,GAAE,CAAC,KAAK,CAAC,EAAE,CAAC,CAAC;IACvC,WAAW,EAAE;QACX,QAAQ,EAAE,UAAU;QACpB,KAAK,EAAE,KAAK,CAAC,OAAO,CAAC,CAAC,CAAC;QACvB,GAAG,EAAE,KAAK,CAAC,OAAO,CAAC,CAAC,CAAC;QACrB,KAAK,EAAE,KAAK,CAAC,OAAO,CAAC,IAAI,CAAC,GAAG,CAAC;KAC/B;IAED,mBAAmB,EAAE;QACnB,KAAK,EAAE,GAAG;QACV,MAAM,EAAE,KAAK,CAAC,OAAO,CAAC,CAAC,CAAC;KACzB;CACF,CAAC,CAAC,CAAA;AAEH,SAAS,sBAAsB,CAAC,EAC9B,OAAO,EACP,WAAW,EACX,eAAe,GAKhB;IACC,MAAM,EAAE,OAAO,EAAE,GAAG,SAAS,EAAE,CAAA;IAC/B,MAAM,EAAE,WAAW,EAAE,mBAAmB,EAAE,SAAS,GAAG,EAAE,EAAE,GAAG,OAAO,CAAA;IACpE,OAAO,CACL,8BAAC,iBAAM,IAAC,IAAI,QAAC,OAAO,EAAE,WAAW,EAAE,QAAQ,EAAC,IAAI;QAC9C,8BAAC,sBAAW;;YAEV,8BAAC,qBAAU,IACT,SAAS,EAAE,OAAO,CAAC,WAAW,EAC9B,OAAO,EAAE,GAAG,EAAE,CAAC,WAAW,EAAE;gBAE5B,8BAAC,eAAS,OAAG,CACF,CACD;QACd,8BAAC,wBAAa;YACZ,8BAAC,qBAAU,sDAAyD;YACpE,uCAAK,SAAS,EAAE,OAAO,CAAC,mBAAmB;gBACxC,WAAW,CAAC,GAAG,CAAC,IAAI,CAAC,EAAE;oBACtB,MAAM,IAAI,GAAG,IAAA,8BAAc,EAAC,IAAI,EAAE,MAAM,CAAC,CAAA;oBACzC,MAAM,aAAa,GAAG,IAAA,8BAAc,EAAC,IAAI,EAAE,eAAe,CAAC,CAAA;oBAC3D,MAAM,KAAK,GAAG,SAAS,CAAC,IAAI,CAAC,IAAI,CAAC,EAAE,CAAC,IAAI,KAAK,IAAI,CAAC,IAAI,CAAC,CAAA;oBACxD,OAAO,CACL,8BAAC,2BAAgB,IACf,GAAG,EAAE,IAAI,CAAC,YAAY,EACtB,OAAO,EACL,8BAAC,mBAAQ,IACP,OAAO,EAAE,CAAC,CAAC,KAAK,EAChB,QAAQ,EAAE,GAAG,EAAE;;gCACb,IAAI,KAAK,EAAE;oCACT,eAAe,CAAC,IAAI,CAAC,CAAA;iCACtB;qCAAM;oCACL,MAAA,OAAO,CAAC,cAAc,wDAAG,IAAI,CAAC,CAAA;iCAC/B;4BACH,CAAC,EACD,KAAK,EAAC,SAAS,GACf,EAEJ,KAAK,EAAE,GAAG,IAAI,KAAK,QAAQ,CAAC,aAAa,CAAC,IAAI,CAAC,GAAG,CAAC,CAAC,GAAG,GACvD,CACH,CAAA;gBACH,CAAC,CAAC;gBACD,CAAC,WAAW,CAAC,MAAM,CAAC,CAAC,CAAC,CACrB,8BAAC,qBAAU,+BAAkC,CAC9C,CAAC,CAAC,CAAC,IAAI,CACJ,CACQ;QAChB,8BAAC,wBAAa;YACZ,8BAAC,iBAAM,IACL,OAAO,EAAE,GAAG,EAAE,CAAC,WAAW,EAAE,EAC5B,OAAO,EAAC,WAAW,EACnB,KAAK,EAAC,SAAS,YAGR,CACK,CACT,CACV,CAAA;AACH,CAAC;AAED,kBAAe,IAAA,qBAAQ,EAAC,sBAAsB,CAAC,CAAA"}
+{"version":3,"file":"ToggleConnectionsDialog.js","sourceRoot":"","sources":["../../../src/HierarchicalTrackSelectorWidget/components/ToggleConnectionsDialog.tsx"],"names":[],"mappings":";;;;;;AAAA,kDAAyB;AACzB,4CAOsB;AACtB,yCAAyC;AACzC,uCAA0C;AAC1C,2CAAqC;AACrC,+DAGoC;AAGpC,SAAgB,QAAQ,CAAC,IAAY;IACnC,OAAO,IAAI,CAAC,MAAM,GAAG,EAAE,CAAC,CAAC,CAAC,GAAG,IAAI,CAAC,KAAK,CAAC,CAAC,EAAE,EAAE,CAAC,KAAK,CAAC,CAAC,CAAC,IAAI,CAAA;AAC5D,CAAC;AAFD,4BAEC;AAED,MAAM,SAAS,GAAG,IAAA,gBAAU,GAAE,CAAC,KAAK,CAAC,EAAE,CAAC,CAAC;IACvC,mBAAmB,EAAE;QACnB,KAAK,EAAE,GAAG;QACV,MAAM,EAAE,KAAK,CAAC,OAAO,CAAC,CAAC,CAAC;KACzB;CACF,CAAC,CAAC,CAAA;AAEH,SAAS,sBAAsB,CAAC,EAC9B,OAAO,EACP,WAAW,EACX,eAAe,GAKhB;IACC,MAAM,EAAE,OAAO,EAAE,GAAG,SAAS,EAAE,CAAA;IAC/B,MAAM,EAAE,WAAW,EAAE,mBAAmB,EAAE,SAAS,GAAG,EAAE,EAAE,GAAG,OAAO,CAAA;IACpE,OAAO,CACL,8BAAC,WAAM,IACL,IAAI,QACJ,OAAO,EAAE,WAAW,EACpB,QAAQ,EAAC,IAAI,EACb,KAAK,EAAC,yBAAyB;QAE/B,8BAAC,wBAAa;YACZ,8BAAC,qBAAU,sDAAyD;YACpE,uCAAK,SAAS,EAAE,OAAO,CAAC,mBAAmB;gBACxC,WAAW,CAAC,GAAG,CAAC,IAAI,CAAC,EAAE;oBACtB,MAAM,IAAI,GAAG,IAAA,8BAAc,EAAC,IAAI,EAAE,MAAM,CAAC,CAAA;oBACzC,MAAM,aAAa,GAAG,IAAA,8BAAc,EAAC,IAAI,EAAE,eAAe,CAAC,CAAA;oBAC3D,MAAM,KAAK,GAAG,SAAS,CAAC,IAAI,CAAC,IAAI,CAAC,EAAE,CAAC,IAAI,KAAK,IAAI,CAAC,IAAI,CAAC,CAAA;oBACxD,OAAO,CACL,8BAAC,2BAAgB,IACf,GAAG,EAAE,IAAI,CAAC,YAAY,EACtB,OAAO,EACL,8BAAC,mBAAQ,IACP,OAAO,EAAE,CAAC,CAAC,KAAK,EAChB,QAAQ,EAAE,GAAG,EAAE;;gCACb,IAAI,KAAK,EAAE;oCACT,eAAe,CAAC,IAAI,CAAC,CAAA;iCACtB;qCAAM;oCACL,MAAA,OAAO,CAAC,cAAc,wDAAG,IAAI,CAAC,CAAA;iCAC/B;4BACH,CAAC,EACD,KAAK,EAAC,SAAS,GACf,EAEJ,KAAK,EAAE,GAAG,IAAI,KAAK,QAAQ,CAAC,aAAa,CAAC,IAAI,CAAC,GAAG,CAAC,CAAC,GAAG,GACvD,CACH,CAAA;gBACH,CAAC,CAAC;gBACD,CAAC,WAAW,CAAC,MAAM,CAAC,CAAC,CAAC,CACrB,8BAAC,qBAAU,+BAAkC,CAC9C,CAAC,CAAC,CAAC,IAAI,CACJ,CACQ;QAChB,8BAAC,wBAAa;YACZ,8BAAC,iBAAM,IACL,OAAO,EAAE,GAAG,EAAE,CAAC,WAAW,EAAE,EAC5B,OAAO,EAAC,WAAW,EACnB,KAAK,EAAC,SAAS,YAGR,CACK,CACT,CACV,CAAA;AACH,CAAC;AAED,kBAAe,IAAA,qBAAQ,EAAC,sBAAsB,CAAC,CAAA"}

package/dist/HierarchicalTrackSelectorWidget/model.d.ts

@@ -1,7 +1,7 @@
 import { Instance } from 'mobx-state-tree';
 import { AnyConfigurationModel } from '@jbrowse/core/configuration';
 import PluginManager from '@jbrowse/core/PluginManager';
-export declare type TreeNode = {
+export type TreeNode = {
     name: string;
     id: string;
     conf?: AnyConfigurationModel;
@@ -65,5 +65,5 @@ export default function stateTreeFactory(pluginManager: PluginManager): import("
         tracks: AnyConfigurationModel[];
     }): TreeNode[];
 }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>;
-export declare type HierarchicalTrackSelectorStateModel = ReturnType<typeof stateTreeFactory>;
-export declare type HierarchicalTrackSelectorModel = Instance<HierarchicalTrackSelectorStateModel>;
+export type HierarchicalTrackSelectorStateModel = ReturnType<typeof stateTreeFactory>;
+export type HierarchicalTrackSelectorModel = Instance<HierarchicalTrackSelectorStateModel>;

package/dist/HierarchicalTrackSelectorWidget/model.js

@@ -94,7 +94,7 @@ function stateTreeFactory(pluginManager) {
     }))
         .actions(self => ({
         addToSelection(elt) {
-            self.selection = [...self.selection, ...elt];
+            self.selection = (0, util_1.dedupe)([...self.selection, ...elt], e => e.trackId);
         },
         removeFromSelection(elt) {
             self.selection = self.selection.filter(f => !elt.includes(f));