@jbrowse/plugin-data-management 2.17.0 → 2.18.0
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/dist/AddConnectionWidget/components/AddConnectionWidget.js +3 -5
- package/dist/AddConnectionWidget/components/ConfigureConnection.d.ts +3 -3
- package/dist/AddConnectionWidget/components/ConfigureConnection.js +2 -2
- package/dist/AddConnectionWidget/components/ConnectionTypeSelect.d.ts +1 -1
- package/dist/AddConnectionWidget/components/ConnectionTypeSelect.js +1 -2
- package/dist/AddConnectionWidget/index.d.ts +1 -1
- package/dist/AddConnectionWidget/index.js +1 -1
- package/dist/AddConnectionWidget/model.js +1 -1
- package/dist/AddTrackWidget/components/AddTrackWidget.d.ts +1 -1
- package/dist/AddTrackWidget/components/AddTrackWidget.js +2 -3
- package/dist/AddTrackWidget/components/ConfirmTrack.d.ts +1 -1
- package/dist/AddTrackWidget/components/ConfirmTrack.js +5 -6
- package/dist/AddTrackWidget/components/DefaultAddTrackWorkflow.d.ts +1 -1
- package/dist/AddTrackWidget/components/DefaultAddTrackWorkflow.js +4 -5
- package/dist/AddTrackWidget/components/PasteConfigWorkflow.d.ts +1 -1
- package/dist/AddTrackWidget/components/PasteConfigWorkflow.js +2 -2
- package/dist/AddTrackWidget/components/TextIndexingConfig.d.ts +1 -1
- package/dist/AddTrackWidget/components/TextIndexingConfig.js +4 -7
- package/dist/AddTrackWidget/components/TrackAdapterSelector.d.ts +1 -1
- package/dist/AddTrackWidget/components/TrackAdapterSelector.js +2 -8
- package/dist/AddTrackWidget/components/TrackSourceSelect.d.ts +1 -1
- package/dist/AddTrackWidget/components/TrackSourceSelect.js +2 -2
- package/dist/AddTrackWidget/components/TrackTypeSelector.d.ts +1 -1
- package/dist/AddTrackWidget/components/TrackTypeSelector.js +1 -2
- package/dist/AddTrackWidget/index.d.ts +1 -1
- package/dist/AddTrackWidget/index.js +1 -1
- package/dist/AddTrackWidget/model.d.ts +3 -84
- package/dist/AddTrackWidget/model.js +3 -91
- package/dist/AssemblyManager/AssemblyAddForm.d.ts +4 -4
- package/dist/AssemblyManager/AssemblyAddForm.js +100 -99
- package/dist/AssemblyManager/AssemblyEditor.d.ts +3 -2
- package/dist/AssemblyManager/AssemblyEditor.js +10 -3
- package/dist/AssemblyManager/AssemblyManager.d.ts +4 -3
- package/dist/AssemblyManager/AssemblyManager.js +17 -31
- package/dist/AssemblyManager/AssemblyTable.d.ts +7 -10
- package/dist/AssemblyManager/AssemblyTable.js +53 -34
- package/dist/HierarchicalTrackSelectorWidget/components/HierarchicalFab.d.ts +1 -1
- package/dist/HierarchicalTrackSelectorWidget/components/HierarchicalFab.js +3 -4
- package/dist/HierarchicalTrackSelectorWidget/components/HierarchicalTrackSelector.d.ts +1 -1
- package/dist/HierarchicalTrackSelectorWidget/components/HierarchicalTrackSelector.js +1 -3
- package/dist/HierarchicalTrackSelectorWidget/components/ShoppingCart.d.ts +1 -1
- package/dist/HierarchicalTrackSelectorWidget/components/ShoppingCart.js +3 -4
- package/dist/HierarchicalTrackSelectorWidget/components/dialogs/CloseConnectionDialog.js +2 -2
- package/dist/HierarchicalTrackSelectorWidget/components/dialogs/DeleteConnectionDialog.d.ts +2 -2
- package/dist/HierarchicalTrackSelectorWidget/components/dialogs/DeleteConnectionDialog.js +2 -2
- package/dist/HierarchicalTrackSelectorWidget/components/dialogs/ManageConnectionsDialog.d.ts +2 -2
- package/dist/HierarchicalTrackSelectorWidget/components/dialogs/ManageConnectionsDialog.js +4 -5
- package/dist/HierarchicalTrackSelectorWidget/components/dialogs/ToggleConnectionsDialog.d.ts +2 -2
- package/dist/HierarchicalTrackSelectorWidget/components/dialogs/ToggleConnectionsDialog.js +3 -3
- package/dist/HierarchicalTrackSelectorWidget/components/faceted/FacetFilter.d.ts +1 -1
- package/dist/HierarchicalTrackSelectorWidget/components/faceted/FacetFilter.js +5 -8
- package/dist/HierarchicalTrackSelectorWidget/components/faceted/FacetFilters.d.ts +2 -2
- package/dist/HierarchicalTrackSelectorWidget/components/faceted/FacetFilters.js +0 -6
- package/dist/HierarchicalTrackSelectorWidget/components/faceted/FacetedDialog.d.ts +1 -1
- package/dist/HierarchicalTrackSelectorWidget/components/faceted/FacetedDialog.js +1 -1
- package/dist/HierarchicalTrackSelectorWidget/components/faceted/FacetedHeader.d.ts +1 -1
- package/dist/HierarchicalTrackSelectorWidget/components/faceted/FacetedHeader.js +1 -3
- package/dist/HierarchicalTrackSelectorWidget/components/faceted/FacetedSelector.d.ts +2 -2
- package/dist/HierarchicalTrackSelectorWidget/components/faceted/FacetedSelector.js +5 -8
- package/dist/HierarchicalTrackSelectorWidget/components/tree/DropdownTrackSelector.d.ts +3 -3
- package/dist/HierarchicalTrackSelectorWidget/components/tree/DropdownTrackSelector.js +2 -2
- package/dist/HierarchicalTrackSelectorWidget/components/tree/FavoriteTracks.d.ts +1 -1
- package/dist/HierarchicalTrackSelectorWidget/components/tree/FavoriteTracks.js +1 -2
- package/dist/HierarchicalTrackSelectorWidget/components/tree/HamburgerMenu.d.ts +1 -1
- package/dist/HierarchicalTrackSelectorWidget/components/tree/HamburgerMenu.js +2 -5
- package/dist/HierarchicalTrackSelectorWidget/components/tree/HierarchicalHeader.d.ts +1 -1
- package/dist/HierarchicalTrackSelectorWidget/components/tree/HierarchicalHeader.js +2 -3
- package/dist/HierarchicalTrackSelectorWidget/components/tree/HierarchicalTree.d.ts +2 -2
- package/dist/HierarchicalTrackSelectorWidget/components/tree/HierarchicalTree.js +2 -14
- package/dist/HierarchicalTrackSelectorWidget/components/tree/RecentlyUsedTracks.d.ts +1 -1
- package/dist/HierarchicalTrackSelectorWidget/components/tree/RecentlyUsedTracks.js +2 -3
- package/dist/HierarchicalTrackSelectorWidget/components/tree/TrackCategory.d.ts +1 -1
- package/dist/HierarchicalTrackSelectorWidget/components/tree/TrackCategory.js +2 -6
- package/dist/HierarchicalTrackSelectorWidget/components/tree/TrackLabel.d.ts +2 -2
- package/dist/HierarchicalTrackSelectorWidget/components/tree/TrackLabel.js +2 -4
- package/dist/HierarchicalTrackSelectorWidget/components/tree/TrackLabelMenu.d.ts +2 -2
- package/dist/HierarchicalTrackSelectorWidget/components/tree/TrackLabelMenu.js +3 -4
- package/dist/HierarchicalTrackSelectorWidget/components/tree/TrackListNode.d.ts +1 -1
- package/dist/HierarchicalTrackSelectorWidget/components/tree/TrackListNode.js +1 -11
- package/dist/HierarchicalTrackSelectorWidget/components/util.d.ts +4 -4
- package/dist/HierarchicalTrackSelectorWidget/components/util.js +0 -1
- package/dist/HierarchicalTrackSelectorWidget/facetedModel.d.ts +1 -61
- package/dist/HierarchicalTrackSelectorWidget/facetedModel.js +12 -74
- package/dist/HierarchicalTrackSelectorWidget/filterTracks.d.ts +1 -1
- package/dist/HierarchicalTrackSelectorWidget/generateHierarchy.d.ts +2 -2
- package/dist/HierarchicalTrackSelectorWidget/generateHierarchy.js +0 -13
- package/dist/HierarchicalTrackSelectorWidget/index.d.ts +1 -1
- package/dist/HierarchicalTrackSelectorWidget/index.js +3 -3
- package/dist/HierarchicalTrackSelectorWidget/model.d.ts +3 -177
- package/dist/HierarchicalTrackSelectorWidget/model.js +3 -183
- package/dist/HierarchicalTrackSelectorWidget/util.d.ts +2 -2
- package/dist/HierarchicalTrackSelectorWidget/util.js +0 -3
- package/dist/PluginStoreWidget/components/AddCustomPluginDialog.d.ts +1 -1
- package/dist/PluginStoreWidget/components/AddCustomPluginDialog.js +4 -5
- package/dist/PluginStoreWidget/components/DeletePluginDialog.js +1 -2
- package/dist/PluginStoreWidget/components/InstalledPlugin.d.ts +2 -2
- package/dist/PluginStoreWidget/components/InstalledPlugin.js +28 -27
- package/dist/PluginStoreWidget/components/InstalledPluginsList.d.ts +2 -2
- package/dist/PluginStoreWidget/components/InstalledPluginsList.js +1 -1
- package/dist/PluginStoreWidget/components/PluginCard.d.ts +3 -4
- package/dist/PluginStoreWidget/components/PluginCard.js +20 -18
- package/dist/PluginStoreWidget/components/PluginStoreWidget.d.ts +1 -1
- package/dist/PluginStoreWidget/components/PluginStoreWidget.js +24 -20
- package/dist/PluginStoreWidget/components/util.d.ts +1 -1
- package/dist/PluginStoreWidget/components/util.js +0 -1
- package/dist/PluginStoreWidget/index.d.ts +1 -1
- package/dist/PluginStoreWidget/index.js +1 -1
- package/dist/PluginStoreWidget/model.d.ts +2 -8
- package/dist/PluginStoreWidget/model.js +1 -19
- package/dist/{ucsc-trackhub → UCSCTrackHub}/configSchema.d.ts +0 -6
- package/dist/{ucsc-trackhub → UCSCTrackHub}/configSchema.js +2 -14
- package/{esm/ucsc-trackhub → dist/UCSCTrackHub}/doConnect.d.ts +1 -1
- package/dist/{ucsc-trackhub → UCSCTrackHub}/doConnect.js +1 -5
- package/dist/{ucsc-trackhub → UCSCTrackHub}/index.d.ts +1 -1
- package/dist/{ucsc-trackhub → UCSCTrackHub}/index.js +11 -9
- package/dist/{ucsc-trackhub → UCSCTrackHub}/model.d.ts +1 -14
- package/dist/{ucsc-trackhub → UCSCTrackHub}/model.js +1 -16
- package/dist/{ucsc-trackhub → UCSCTrackHub}/ucscAssemblies.js +0 -3
- package/dist/{ucsc-trackhub → UCSCTrackHub}/ucscTrackHub.d.ts +1 -1
- package/dist/{ucsc-trackhub → UCSCTrackHub}/ucscTrackHub.js +1 -15
- package/dist/index.d.ts +9 -9
- package/dist/index.js +4 -4
- package/esm/AddConnectionWidget/components/AddConnectionWidget.js +3 -5
- package/esm/AddConnectionWidget/components/ConfigureConnection.d.ts +3 -3
- package/esm/AddConnectionWidget/components/ConfigureConnection.js +2 -2
- package/esm/AddConnectionWidget/components/ConnectionTypeSelect.d.ts +1 -1
- package/esm/AddConnectionWidget/components/ConnectionTypeSelect.js +1 -2
- package/esm/AddConnectionWidget/index.d.ts +1 -1
- package/esm/AddConnectionWidget/index.js +1 -1
- package/esm/AddConnectionWidget/model.js +1 -1
- package/esm/AddTrackWidget/components/AddTrackWidget.d.ts +1 -1
- package/esm/AddTrackWidget/components/AddTrackWidget.js +2 -3
- package/esm/AddTrackWidget/components/ConfirmTrack.d.ts +1 -1
- package/esm/AddTrackWidget/components/ConfirmTrack.js +5 -6
- package/esm/AddTrackWidget/components/DefaultAddTrackWorkflow.d.ts +1 -1
- package/esm/AddTrackWidget/components/DefaultAddTrackWorkflow.js +4 -5
- package/esm/AddTrackWidget/components/PasteConfigWorkflow.d.ts +1 -1
- package/esm/AddTrackWidget/components/PasteConfigWorkflow.js +2 -2
- package/esm/AddTrackWidget/components/TextIndexingConfig.d.ts +1 -1
- package/esm/AddTrackWidget/components/TextIndexingConfig.js +5 -8
- package/esm/AddTrackWidget/components/TrackAdapterSelector.d.ts +1 -1
- package/esm/AddTrackWidget/components/TrackAdapterSelector.js +2 -8
- package/esm/AddTrackWidget/components/TrackSourceSelect.d.ts +1 -1
- package/esm/AddTrackWidget/components/TrackSourceSelect.js +2 -2
- package/esm/AddTrackWidget/components/TrackTypeSelector.d.ts +1 -1
- package/esm/AddTrackWidget/components/TrackTypeSelector.js +1 -2
- package/esm/AddTrackWidget/index.d.ts +1 -1
- package/esm/AddTrackWidget/index.js +1 -1
- package/esm/AddTrackWidget/model.d.ts +3 -84
- package/esm/AddTrackWidget/model.js +3 -91
- package/esm/AssemblyManager/AssemblyAddForm.d.ts +4 -4
- package/esm/AssemblyManager/AssemblyAddForm.js +100 -96
- package/esm/AssemblyManager/AssemblyEditor.d.ts +3 -2
- package/esm/AssemblyManager/AssemblyEditor.js +10 -3
- package/esm/AssemblyManager/AssemblyManager.d.ts +4 -3
- package/esm/AssemblyManager/AssemblyManager.js +17 -31
- package/esm/AssemblyManager/AssemblyTable.d.ts +7 -10
- package/esm/AssemblyManager/AssemblyTable.js +54 -35
- package/esm/HierarchicalTrackSelectorWidget/components/HierarchicalFab.d.ts +1 -1
- package/esm/HierarchicalTrackSelectorWidget/components/HierarchicalFab.js +3 -4
- package/esm/HierarchicalTrackSelectorWidget/components/HierarchicalTrackSelector.d.ts +1 -1
- package/esm/HierarchicalTrackSelectorWidget/components/HierarchicalTrackSelector.js +1 -3
- package/esm/HierarchicalTrackSelectorWidget/components/ShoppingCart.d.ts +1 -1
- package/esm/HierarchicalTrackSelectorWidget/components/ShoppingCart.js +3 -4
- package/esm/HierarchicalTrackSelectorWidget/components/dialogs/CloseConnectionDialog.js +2 -2
- package/esm/HierarchicalTrackSelectorWidget/components/dialogs/DeleteConnectionDialog.d.ts +2 -2
- package/esm/HierarchicalTrackSelectorWidget/components/dialogs/DeleteConnectionDialog.js +2 -2
- package/esm/HierarchicalTrackSelectorWidget/components/dialogs/ManageConnectionsDialog.d.ts +2 -2
- package/esm/HierarchicalTrackSelectorWidget/components/dialogs/ManageConnectionsDialog.js +4 -5
- package/esm/HierarchicalTrackSelectorWidget/components/dialogs/ToggleConnectionsDialog.d.ts +2 -2
- package/esm/HierarchicalTrackSelectorWidget/components/dialogs/ToggleConnectionsDialog.js +3 -3
- package/esm/HierarchicalTrackSelectorWidget/components/faceted/FacetFilter.d.ts +1 -1
- package/esm/HierarchicalTrackSelectorWidget/components/faceted/FacetFilter.js +5 -8
- package/esm/HierarchicalTrackSelectorWidget/components/faceted/FacetFilters.d.ts +2 -2
- package/esm/HierarchicalTrackSelectorWidget/components/faceted/FacetFilters.js +0 -6
- package/esm/HierarchicalTrackSelectorWidget/components/faceted/FacetedDialog.d.ts +1 -1
- package/esm/HierarchicalTrackSelectorWidget/components/faceted/FacetedDialog.js +1 -1
- package/esm/HierarchicalTrackSelectorWidget/components/faceted/FacetedHeader.d.ts +1 -1
- package/esm/HierarchicalTrackSelectorWidget/components/faceted/FacetedHeader.js +1 -3
- package/esm/HierarchicalTrackSelectorWidget/components/faceted/FacetedSelector.d.ts +2 -2
- package/esm/HierarchicalTrackSelectorWidget/components/faceted/FacetedSelector.js +5 -8
- package/esm/HierarchicalTrackSelectorWidget/components/tree/DropdownTrackSelector.d.ts +3 -3
- package/esm/HierarchicalTrackSelectorWidget/components/tree/DropdownTrackSelector.js +2 -2
- package/esm/HierarchicalTrackSelectorWidget/components/tree/FavoriteTracks.d.ts +1 -1
- package/esm/HierarchicalTrackSelectorWidget/components/tree/FavoriteTracks.js +1 -2
- package/esm/HierarchicalTrackSelectorWidget/components/tree/HamburgerMenu.d.ts +1 -1
- package/esm/HierarchicalTrackSelectorWidget/components/tree/HamburgerMenu.js +3 -6
- package/esm/HierarchicalTrackSelectorWidget/components/tree/HierarchicalHeader.d.ts +1 -1
- package/esm/HierarchicalTrackSelectorWidget/components/tree/HierarchicalHeader.js +2 -3
- package/esm/HierarchicalTrackSelectorWidget/components/tree/HierarchicalTree.d.ts +2 -2
- package/esm/HierarchicalTrackSelectorWidget/components/tree/HierarchicalTree.js +3 -15
- package/esm/HierarchicalTrackSelectorWidget/components/tree/RecentlyUsedTracks.d.ts +1 -1
- package/esm/HierarchicalTrackSelectorWidget/components/tree/RecentlyUsedTracks.js +2 -3
- package/esm/HierarchicalTrackSelectorWidget/components/tree/TrackCategory.d.ts +1 -1
- package/esm/HierarchicalTrackSelectorWidget/components/tree/TrackCategory.js +2 -6
- package/esm/HierarchicalTrackSelectorWidget/components/tree/TrackLabel.d.ts +2 -2
- package/esm/HierarchicalTrackSelectorWidget/components/tree/TrackLabel.js +2 -4
- package/esm/HierarchicalTrackSelectorWidget/components/tree/TrackLabelMenu.d.ts +2 -2
- package/esm/HierarchicalTrackSelectorWidget/components/tree/TrackLabelMenu.js +3 -4
- package/esm/HierarchicalTrackSelectorWidget/components/tree/TrackListNode.d.ts +1 -1
- package/esm/HierarchicalTrackSelectorWidget/components/tree/TrackListNode.js +1 -11
- package/esm/HierarchicalTrackSelectorWidget/components/util.d.ts +4 -4
- package/esm/HierarchicalTrackSelectorWidget/components/util.js +0 -1
- package/esm/HierarchicalTrackSelectorWidget/facetedModel.d.ts +1 -61
- package/esm/HierarchicalTrackSelectorWidget/facetedModel.js +6 -68
- package/esm/HierarchicalTrackSelectorWidget/filterTracks.d.ts +1 -1
- package/esm/HierarchicalTrackSelectorWidget/filterTracks.js +1 -1
- package/esm/HierarchicalTrackSelectorWidget/generateHierarchy.d.ts +2 -2
- package/esm/HierarchicalTrackSelectorWidget/generateHierarchy.js +1 -14
- package/esm/HierarchicalTrackSelectorWidget/index.d.ts +1 -1
- package/esm/HierarchicalTrackSelectorWidget/index.js +3 -3
- package/esm/HierarchicalTrackSelectorWidget/model.d.ts +3 -177
- package/esm/HierarchicalTrackSelectorWidget/model.js +4 -184
- package/esm/HierarchicalTrackSelectorWidget/util.d.ts +2 -2
- package/esm/HierarchicalTrackSelectorWidget/util.js +1 -4
- package/esm/PluginStoreWidget/components/AddCustomPluginDialog.d.ts +1 -1
- package/esm/PluginStoreWidget/components/AddCustomPluginDialog.js +4 -5
- package/esm/PluginStoreWidget/components/DeletePluginDialog.js +1 -2
- package/esm/PluginStoreWidget/components/InstalledPlugin.d.ts +2 -2
- package/esm/PluginStoreWidget/components/InstalledPlugin.js +29 -28
- package/esm/PluginStoreWidget/components/InstalledPluginsList.d.ts +2 -2
- package/esm/PluginStoreWidget/components/InstalledPluginsList.js +1 -1
- package/esm/PluginStoreWidget/components/PluginCard.d.ts +3 -4
- package/esm/PluginStoreWidget/components/PluginCard.js +22 -20
- package/esm/PluginStoreWidget/components/PluginStoreWidget.d.ts +1 -1
- package/esm/PluginStoreWidget/components/PluginStoreWidget.js +25 -21
- package/esm/PluginStoreWidget/components/util.d.ts +1 -1
- package/esm/PluginStoreWidget/components/util.js +1 -2
- package/esm/PluginStoreWidget/index.d.ts +1 -1
- package/esm/PluginStoreWidget/index.js +1 -1
- package/esm/PluginStoreWidget/model.d.ts +2 -8
- package/esm/PluginStoreWidget/model.js +1 -19
- package/esm/{ucsc-trackhub → UCSCTrackHub}/configSchema.d.ts +0 -6
- package/esm/{ucsc-trackhub → UCSCTrackHub}/configSchema.js +2 -14
- package/{dist/ucsc-trackhub → esm/UCSCTrackHub}/doConnect.d.ts +1 -1
- package/esm/{ucsc-trackhub → UCSCTrackHub}/doConnect.js +1 -5
- package/esm/{ucsc-trackhub → UCSCTrackHub}/index.d.ts +1 -1
- package/esm/UCSCTrackHub/index.js +15 -0
- package/esm/{ucsc-trackhub → UCSCTrackHub}/model.d.ts +1 -14
- package/esm/{ucsc-trackhub → UCSCTrackHub}/model.js +1 -16
- package/esm/{ucsc-trackhub → UCSCTrackHub}/ucscAssemblies.js +0 -3
- package/esm/{ucsc-trackhub → UCSCTrackHub}/ucscTrackHub.d.ts +1 -1
- package/esm/{ucsc-trackhub → UCSCTrackHub}/ucscTrackHub.js +2 -16
- package/esm/index.d.ts +9 -9
- package/esm/index.js +3 -3
- package/package.json +2 -2
- package/esm/ucsc-trackhub/index.js +0 -13
- /package/dist/{ucsc-trackhub → UCSCTrackHub}/ucscAssemblies.d.ts +0 -0
- /package/esm/{ucsc-trackhub → UCSCTrackHub}/ucscAssemblies.d.ts +0 -0
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key: `mark-${idx}`, style: { left: idx * width + 4, height: style === null || style === void 0 ? void 0 : style.height }, className: classes.nestingLevelMarker }))),
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new Array(nestingLevel).fill(0).map((_, idx) => (react_1.default.createElement("div", { key: `mark-${idx}`, style: { left: idx * width + 4, height: style === null || style === void 0 ? void 0 : style.height }, className: classes.nestingLevelMarker }))),
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@@ -1,7 +1,7 @@
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import {
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import { HierarchicalTrackSelectorModel } from '../model';
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import { MenuItem } from '@jbrowse/core/ui';
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import type { TreeNode } from '../generateHierarchy';
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import type { HierarchicalTrackSelectorModel } from '../model';
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export interface NodeData {
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@@ -4,7 +4,6 @@ exports.getAllChildren = getAllChildren;
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exports.treeToMap = treeToMap;
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// @ts-expect-error
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? subtree.children
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.map(t => (t.type === 'category' ? getAllChildren(t) : t.conf))
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@@ -1,65 +1,23 @@
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import { Instance } from 'mobx-state-tree';
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/**
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* #stateModel FacetedModel
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*/
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/**
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/**
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* #action
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/**
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*/
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/**
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*/
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setUseShoppingCart(f: boolean): void;
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/**
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* #action
|
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*/
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setFilterText(str: string): void;
|
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/**
|
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* #action
|
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*/
|
|
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17
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setShowSparse(f: boolean): void;
|
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|
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/**
|
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* #action
|
|
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|
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*/
|
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18
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setShowOptions(f: boolean): void;
|
|
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|
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/**
|
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* #action
|
|
57
|
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*/
|
|
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19
|
setShowFilters(f: boolean): void;
|
|
59
20
|
} & {
|
|
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|
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/**
|
|
61
|
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* #getter
|
|
62
|
-
*/
|
|
63
21
|
readonly allTrackConfigurations: ({
|
|
64
22
|
[x: string]: any;
|
|
65
23
|
} & import("mobx-state-tree/dist/internal").NonEmptyObject & {
|
|
@@ -72,9 +30,6 @@ export declare function facetedStateTreeF(): import("mobx-state-tree").IModelTyp
|
|
|
72
30
|
} & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>);
|
|
73
31
|
} & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>)[];
|
|
74
32
|
} & {
|
|
75
|
-
/**
|
|
76
|
-
* #getter
|
|
77
|
-
*/
|
|
78
33
|
readonly rows: {
|
|
79
34
|
readonly id: string;
|
|
80
35
|
readonly conf: {
|
|
@@ -95,22 +50,10 @@ export declare function facetedStateTreeF(): import("mobx-state-tree").IModelTyp
|
|
|
95
50
|
readonly metadata: Record<string, unknown>;
|
|
96
51
|
}[];
|
|
97
52
|
} & {
|
|
98
|
-
/**
|
|
99
|
-
* #getter
|
|
100
|
-
*/
|
|
101
53
|
readonly filteredNonMetadataKeys: string[] | readonly ["category", "adapter", "description"];
|
|
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|
-
/**
|
|
103
|
-
* #getter
|
|
104
|
-
*/
|
|
105
54
|
readonly metadataKeys: string[];
|
|
106
55
|
readonly filteredMetadataKeys: string[];
|
|
107
|
-
/**
|
|
108
|
-
* #getter
|
|
109
|
-
*/
|
|
110
56
|
readonly fields: string[];
|
|
111
|
-
/**
|
|
112
|
-
* #getter
|
|
113
|
-
*/
|
|
114
57
|
readonly filteredRows: {
|
|
115
58
|
readonly id: string;
|
|
116
59
|
readonly conf: {
|
|
@@ -131,9 +74,6 @@ export declare function facetedStateTreeF(): import("mobx-state-tree").IModelTyp
|
|
|
131
74
|
readonly metadata: Record<string, unknown>;
|
|
132
75
|
}[];
|
|
133
76
|
} & {
|
|
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|
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/**
|
|
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|
-
* #action
|
|
136
|
-
*/
|
|
137
77
|
setVisible(args: Record<string, boolean>): void;
|
|
138
78
|
afterAttach(): void;
|
|
139
79
|
}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>;
|
|
@@ -1,41 +1,23 @@
|
|
|
1
1
|
"use strict";
|
|
2
2
|
Object.defineProperty(exports, "__esModule", { value: true });
|
|
3
3
|
exports.facetedStateTreeF = facetedStateTreeF;
|
|
4
|
-
const mobx_state_tree_1 = require("mobx-state-tree");
|
|
5
|
-
const util_1 = require("./util");
|
|
6
4
|
const configuration_1 = require("@jbrowse/core/configuration");
|
|
5
|
+
const util_1 = require("@jbrowse/core/util");
|
|
7
6
|
const tracks_1 = require("@jbrowse/core/util/tracks");
|
|
8
|
-
const util_2 = require("@jbrowse/core/util");
|
|
9
7
|
const mobx_1 = require("mobx");
|
|
8
|
+
const mobx_state_tree_1 = require("mobx-state-tree");
|
|
9
|
+
const util_2 = require("./components/faceted/util");
|
|
10
10
|
const facetedUtil_1 = require("./facetedUtil");
|
|
11
|
-
const util_3 = require("./
|
|
11
|
+
const util_3 = require("./util");
|
|
12
12
|
const nonMetadataKeys = ['category', 'adapter', 'description'];
|
|
13
|
-
/**
|
|
14
|
-
* #stateModel FacetedModel
|
|
15
|
-
*/
|
|
16
13
|
function facetedStateTreeF() {
|
|
17
14
|
return mobx_state_tree_1.types
|
|
18
15
|
.model('FacetedModel', {
|
|
19
|
-
/**
|
|
20
|
-
* #property
|
|
21
|
-
*/
|
|
22
16
|
filterText: mobx_state_tree_1.types.optional(mobx_state_tree_1.types.string, ''),
|
|
23
|
-
|
|
24
|
-
|
|
25
|
-
|
|
26
|
-
|
|
27
|
-
/**
|
|
28
|
-
* #property
|
|
29
|
-
*/
|
|
30
|
-
showFilters: mobx_state_tree_1.types.optional(mobx_state_tree_1.types.boolean, () => JSON.parse((0, util_2.localStorageGetItem)('facet-showFilters') || 'true')),
|
|
31
|
-
/**
|
|
32
|
-
* #property
|
|
33
|
-
*/
|
|
34
|
-
showOptions: mobx_state_tree_1.types.optional(mobx_state_tree_1.types.boolean, () => JSON.parse((0, util_2.localStorageGetItem)('facet-showTableOptions') || 'false')),
|
|
35
|
-
/**
|
|
36
|
-
* #property
|
|
37
|
-
*/
|
|
38
|
-
panelWidth: mobx_state_tree_1.types.optional(mobx_state_tree_1.types.number, () => JSON.parse((0, util_2.localStorageGetItem)('facet-panelWidth') || '400')),
|
|
17
|
+
showSparse: mobx_state_tree_1.types.optional(mobx_state_tree_1.types.boolean, () => JSON.parse((0, util_1.localStorageGetItem)('facet-showSparse') || 'false')),
|
|
18
|
+
showFilters: mobx_state_tree_1.types.optional(mobx_state_tree_1.types.boolean, () => JSON.parse((0, util_1.localStorageGetItem)('facet-showFilters') || 'true')),
|
|
19
|
+
showOptions: mobx_state_tree_1.types.optional(mobx_state_tree_1.types.boolean, () => JSON.parse((0, util_1.localStorageGetItem)('facet-showTableOptions') || 'false')),
|
|
20
|
+
panelWidth: mobx_state_tree_1.types.optional(mobx_state_tree_1.types.number, () => JSON.parse((0, util_1.localStorageGetItem)('facet-panelWidth') || '400')),
|
|
39
21
|
})
|
|
40
22
|
.volatile(() => ({
|
|
41
23
|
visible: {},
|
|
@@ -43,67 +25,40 @@ function facetedStateTreeF() {
|
|
|
43
25
|
filters: mobx_1.observable.map(),
|
|
44
26
|
}))
|
|
45
27
|
.actions(self => ({
|
|
46
|
-
/**
|
|
47
|
-
* #action
|
|
48
|
-
*/
|
|
49
28
|
setFilter(key, value) {
|
|
50
29
|
self.filters.set(key, value);
|
|
51
30
|
},
|
|
52
|
-
/**
|
|
53
|
-
* #action
|
|
54
|
-
*/
|
|
55
31
|
setPanelWidth(width) {
|
|
56
32
|
self.panelWidth = width;
|
|
57
33
|
return self.panelWidth;
|
|
58
34
|
},
|
|
59
|
-
/**
|
|
60
|
-
* #action
|
|
61
|
-
*/
|
|
62
35
|
setUseShoppingCart(f) {
|
|
63
36
|
self.useShoppingCart = f;
|
|
64
37
|
},
|
|
65
|
-
/**
|
|
66
|
-
* #action
|
|
67
|
-
*/
|
|
68
38
|
setFilterText(str) {
|
|
69
39
|
self.filterText = str;
|
|
70
40
|
},
|
|
71
|
-
/**
|
|
72
|
-
* #action
|
|
73
|
-
*/
|
|
74
41
|
setShowSparse(f) {
|
|
75
42
|
self.showSparse = f;
|
|
76
43
|
},
|
|
77
|
-
/**
|
|
78
|
-
* #action
|
|
79
|
-
*/
|
|
80
44
|
setShowOptions(f) {
|
|
81
45
|
self.showOptions = f;
|
|
82
46
|
},
|
|
83
|
-
/**
|
|
84
|
-
* #action
|
|
85
|
-
*/
|
|
86
47
|
setShowFilters(f) {
|
|
87
48
|
self.showFilters = f;
|
|
88
49
|
},
|
|
89
50
|
}))
|
|
90
51
|
.views(self => ({
|
|
91
|
-
/**
|
|
92
|
-
* #getter
|
|
93
|
-
*/
|
|
94
52
|
get allTrackConfigurations() {
|
|
95
53
|
return (0, mobx_state_tree_1.getParent)(self).allTrackConfigurations;
|
|
96
54
|
},
|
|
97
55
|
}))
|
|
98
56
|
.views(self => ({
|
|
99
|
-
/**
|
|
100
|
-
* #getter
|
|
101
|
-
*/
|
|
102
57
|
get rows() {
|
|
103
|
-
const session = (0,
|
|
58
|
+
const session = (0, util_1.getSession)(self);
|
|
104
59
|
const { allTrackConfigurations, filterText } = self;
|
|
105
60
|
return allTrackConfigurations
|
|
106
|
-
.filter(conf => (0,
|
|
61
|
+
.filter(conf => (0, util_3.matches)(filterText, conf, session))
|
|
107
62
|
.map(track => {
|
|
108
63
|
var _a, _b;
|
|
109
64
|
return {
|
|
@@ -119,30 +74,19 @@ function facetedStateTreeF() {
|
|
|
119
74
|
},
|
|
120
75
|
}))
|
|
121
76
|
.views(self => ({
|
|
122
|
-
/**
|
|
123
|
-
* #getter
|
|
124
|
-
*/
|
|
125
77
|
get filteredNonMetadataKeys() {
|
|
126
78
|
return self.showSparse
|
|
127
79
|
? nonMetadataKeys
|
|
128
80
|
: (0, facetedUtil_1.findNonSparseKeys)(nonMetadataKeys, self.rows, (r, f) => r[f]);
|
|
129
81
|
},
|
|
130
|
-
/**
|
|
131
|
-
* #getter
|
|
132
|
-
*/
|
|
133
82
|
get metadataKeys() {
|
|
134
83
|
return [...new Set(self.rows.flatMap(row => (0, facetedUtil_1.getRootKeys)(row.metadata)))];
|
|
135
84
|
},
|
|
136
85
|
get filteredMetadataKeys() {
|
|
137
86
|
return self.showSparse
|
|
138
87
|
? this.metadataKeys
|
|
139
|
-
: (0, facetedUtil_1.findNonSparseKeys)(this.metadataKeys, self.rows,
|
|
140
|
-
// @ts-expect-error
|
|
141
|
-
(r, f) => r.metadata[f]);
|
|
88
|
+
: (0, facetedUtil_1.findNonSparseKeys)(this.metadataKeys, self.rows, (r, f) => r.metadata[f]);
|
|
142
89
|
},
|
|
143
|
-
/**
|
|
144
|
-
* #getter
|
|
145
|
-
*/
|
|
146
90
|
get fields() {
|
|
147
91
|
return [
|
|
148
92
|
'name',
|
|
@@ -150,20 +94,14 @@ function facetedStateTreeF() {
|
|
|
150
94
|
...this.filteredMetadataKeys.map(m => `metadata.${m}`),
|
|
151
95
|
];
|
|
152
96
|
},
|
|
153
|
-
/**
|
|
154
|
-
* #getter
|
|
155
|
-
*/
|
|
156
97
|
get filteredRows() {
|
|
157
98
|
const arrFilters = [...self.filters.entries()]
|
|
158
99
|
.filter(f => f[1].length > 0)
|
|
159
100
|
.map(([key, val]) => [key, new Set(val)]);
|
|
160
|
-
return self.rows.filter(row => arrFilters.every(([key, val]) => val.has((0,
|
|
101
|
+
return self.rows.filter(row => arrFilters.every(([key, val]) => val.has((0, util_2.getRowStr)(key, row))));
|
|
161
102
|
},
|
|
162
103
|
}))
|
|
163
104
|
.actions(self => ({
|
|
164
|
-
/**
|
|
165
|
-
* #action
|
|
166
|
-
*/
|
|
167
105
|
setVisible(args) {
|
|
168
106
|
self.visible = args;
|
|
169
107
|
},
|
|
@@ -1,5 +1,5 @@
|
|
|
1
|
-
import { AnyConfigurationModel } from '@jbrowse/core/configuration';
|
|
2
|
-
import { MenuItem } from '@jbrowse/core/ui';
|
|
1
|
+
import type { AnyConfigurationModel } from '@jbrowse/core/configuration';
|
|
2
|
+
import type { MenuItem } from '@jbrowse/core/ui';
|
|
3
3
|
export interface TreeTrackNode {
|
|
4
4
|
name: string;
|
|
5
5
|
id: string;
|
|
@@ -4,11 +4,8 @@ exports.generateHierarchy = generateHierarchy;
|
|
|
4
4
|
const configuration_1 = require("@jbrowse/core/configuration");
|
|
5
5
|
const util_1 = require("@jbrowse/core/util");
|
|
6
6
|
const tracks_1 = require("@jbrowse/core/util/tracks");
|
|
7
|
-
// locals
|
|
8
7
|
const util_2 = require("./util");
|
|
9
8
|
function sortConfs(confs, sortNames, sortCategories) {
|
|
10
|
-
// uses readConfObject instead of getTrackName so that the undefined
|
|
11
|
-
// reference sequence track is sorted to the top
|
|
12
9
|
const ret = confs.map(c => {
|
|
13
10
|
var _a, _b, _c;
|
|
14
11
|
return [
|
|
@@ -23,8 +20,6 @@ function sortConfs(confs, sortNames, sortCategories) {
|
|
|
23
20
|
ret.sort((a, b) => a[1].localeCompare(b[1]));
|
|
24
21
|
}
|
|
25
22
|
if (sortCategories) {
|
|
26
|
-
// sort up to three sub-category levels, harder to code it to go deeper
|
|
27
|
-
// than this and likely rarely used
|
|
28
23
|
ret.sort((a, b) => {
|
|
29
24
|
if (a[2] !== b[2]) {
|
|
30
25
|
return a[2].localeCompare(b[2]);
|
|
@@ -49,18 +44,13 @@ function generateHierarchy({ model, trackConfs, extra, noCategories, menuItems,
|
|
|
49
44
|
const session = (0, util_1.getSession)(model);
|
|
50
45
|
const viewTracks = view.tracks;
|
|
51
46
|
const confs = trackConfs.filter(conf => (0, util_2.matches)(filterText, conf, session));
|
|
52
|
-
// uses getConf
|
|
53
47
|
for (const conf of sortConfs(confs, activeSortTrackNames, activeSortCategories)) {
|
|
54
|
-
// copy the categories since this array can be mutated downstream
|
|
55
48
|
const categories = [...((0, configuration_1.readConfObject)(conf, 'category') || [])];
|
|
56
|
-
// hack where if trackId ends with sessionTrack, then push it to a
|
|
57
|
-
// category that starts with a space to force sort to the top
|
|
58
49
|
if (conf.trackId.endsWith('sessionTrack')) {
|
|
59
50
|
categories.unshift(' Session tracks');
|
|
60
51
|
}
|
|
61
52
|
let currLevel = hierarchy;
|
|
62
53
|
if (!noCategories) {
|
|
63
|
-
// find existing category to put track into or create it
|
|
64
54
|
for (let i = 0; i < categories.length; i++) {
|
|
65
55
|
const category = categories[i];
|
|
66
56
|
const ret = currLevel.children.find(c => c.name === category);
|
|
@@ -84,9 +74,6 @@ function generateHierarchy({ model, trackConfs, extra, noCategories, menuItems,
|
|
|
84
74
|
}
|
|
85
75
|
}
|
|
86
76
|
}
|
|
87
|
-
// uses splice to try to put all leaf nodes above "category nodes" if you
|
|
88
|
-
// change the splice to a simple push and open
|
|
89
|
-
// test_data/test_order/config.json you will see the weirdness
|
|
90
77
|
const r = currLevel.children.findIndex(elt => elt.children.length);
|
|
91
78
|
const idx = r === -1 ? currLevel.children.length : r;
|
|
92
79
|
currLevel.children.splice(idx, 0, {
|
|
@@ -1,4 +1,4 @@
|
|
|
1
|
-
import PluginManager from '@jbrowse/core/PluginManager';
|
|
1
|
+
import type PluginManager from '@jbrowse/core/PluginManager';
|
|
2
2
|
export default function HierarchicalTrackSelectorWidgetF(pluginManager: PluginManager): void;
|
|
3
3
|
export { type HierarchicalTrackSelectorModel, default as stateModelFactory, } from './model';
|
|
4
4
|
export { default as configSchema } from './configSchema';
|
|
@@ -28,10 +28,10 @@ var __importDefault = (this && this.__importDefault) || function (mod) {
|
|
|
28
28
|
Object.defineProperty(exports, "__esModule", { value: true });
|
|
29
29
|
exports.configSchema = exports.stateModelFactory = void 0;
|
|
30
30
|
exports.default = HierarchicalTrackSelectorWidgetF;
|
|
31
|
-
const model_1 = __importDefault(require("./model"));
|
|
32
|
-
const configSchema_1 = __importDefault(require("./configSchema"));
|
|
33
|
-
const pluggableElementTypes_1 = require("@jbrowse/core/pluggableElementTypes");
|
|
34
31
|
const react_1 = require("react");
|
|
32
|
+
const pluggableElementTypes_1 = require("@jbrowse/core/pluggableElementTypes");
|
|
33
|
+
const configSchema_1 = __importDefault(require("./configSchema"));
|
|
34
|
+
const model_1 = __importDefault(require("./model"));
|
|
35
35
|
function HierarchicalTrackSelectorWidgetF(pluginManager) {
|
|
36
36
|
pluginManager.addWidgetType(() => {
|
|
37
37
|
return new pluggableElementTypes_1.WidgetType({
|